Multiple sequence alignment - TraesCS7B01G261100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G261100 chr7B 100.000 2529 0 0 1 2529 481659653 481662181 0.000000e+00 4671
1 TraesCS7B01G261100 chr7B 87.500 184 19 4 1957 2138 662746135 662746316 2.550000e-50 209
2 TraesCS7B01G261100 chr7B 79.602 201 36 5 2141 2339 491918755 491918952 3.390000e-29 139
3 TraesCS7B01G261100 chr7D 90.746 1005 50 20 663 1644 459475200 459476184 0.000000e+00 1301
4 TraesCS7B01G261100 chr7D 93.696 349 18 4 3 351 404379513 404379857 1.040000e-143 520
5 TraesCS7B01G261100 chr7D 92.537 268 15 1 1672 1939 459476182 459476444 1.840000e-101 379
6 TraesCS7B01G261100 chr7D 78.713 202 36 6 2141 2339 468510000 468510197 7.340000e-26 128
7 TraesCS7B01G261100 chr1D 94.872 351 15 3 1 351 3534249 3534596 1.710000e-151 545
8 TraesCS7B01G261100 chr1D 86.316 190 20 6 1952 2138 51823020 51823206 4.270000e-48 202
9 TraesCS7B01G261100 chr1D 76.991 339 58 11 2156 2493 35572709 35573028 2.590000e-40 176
10 TraesCS7B01G261100 chr5B 94.302 351 17 3 1 351 87292791 87292444 3.700000e-148 534
11 TraesCS7B01G261100 chr2D 93.258 356 16 4 1 351 45840696 45840344 3.730000e-143 518
12 TraesCS7B01G261100 chrUn 96.633 297 8 2 370 664 237311663 237311367 2.260000e-135 492
13 TraesCS7B01G261100 chrUn 96.633 297 8 2 370 664 274341328 274341624 2.260000e-135 492
14 TraesCS7B01G261100 chrUn 96.633 297 8 2 370 664 402024241 402023945 2.260000e-135 492
15 TraesCS7B01G261100 chrUn 96.633 297 8 2 370 664 407160671 407160967 2.260000e-135 492
16 TraesCS7B01G261100 chrUn 96.633 297 8 2 370 664 412979639 412979343 2.260000e-135 492
17 TraesCS7B01G261100 chrUn 96.633 297 8 2 370 664 425356378 425356674 2.260000e-135 492
18 TraesCS7B01G261100 chrUn 96.633 297 8 2 370 664 428235779 428235483 2.260000e-135 492
19 TraesCS7B01G261100 chrUn 96.633 297 8 2 370 664 451804189 451804485 2.260000e-135 492
20 TraesCS7B01G261100 chrUn 96.633 297 8 2 370 664 452501701 452501405 2.260000e-135 492
21 TraesCS7B01G261100 chrUn 87.500 184 19 4 1957 2138 359775509 359775328 2.550000e-50 209
22 TraesCS7B01G261100 chrUn 86.772 189 21 4 1952 2138 357609651 357609837 9.170000e-50 207
23 TraesCS7B01G261100 chr6B 93.195 338 15 1 1 338 148831799 148831470 8.130000e-135 490
24 TraesCS7B01G261100 chr6B 86.726 113 11 4 2192 2304 68415741 68415849 3.420000e-24 122
25 TraesCS7B01G261100 chr7A 85.598 493 40 11 709 1183 540748964 540748485 2.920000e-134 488
26 TraesCS7B01G261100 chr7A 89.674 368 18 5 1 351 18058471 18058835 3.840000e-123 451
27 TraesCS7B01G261100 chr7A 82.834 367 39 14 2153 2515 540747229 540746883 8.790000e-80 307
28 TraesCS7B01G261100 chr7A 90.476 231 17 1 1696 1926 540748152 540747927 1.470000e-77 300
29 TraesCS7B01G261100 chr7A 86.702 188 20 5 1953 2138 426773726 426773910 1.190000e-48 204
30 TraesCS7B01G261100 chr7A 92.473 93 7 0 994 1086 540753755 540753663 1.580000e-27 134
31 TraesCS7B01G261100 chr7A 90.625 96 9 0 998 1093 540766704 540766609 7.340000e-26 128
32 TraesCS7B01G261100 chr1B 94.276 297 17 0 1 297 671609206 671609502 2.970000e-124 455
33 TraesCS7B01G261100 chr1B 89.807 363 20 2 1 346 280702183 280701821 1.380000e-122 449
34 TraesCS7B01G261100 chr4B 89.807 363 20 4 1 346 76623974 76624336 1.380000e-122 449
35 TraesCS7B01G261100 chr5D 86.772 189 21 4 1952 2138 503322435 503322249 9.170000e-50 207
36 TraesCS7B01G261100 chr5D 85.714 189 23 4 1952 2138 6244334 6244520 1.980000e-46 196
37 TraesCS7B01G261100 chr3D 86.772 189 21 4 1952 2138 545160265 545160451 9.170000e-50 207
38 TraesCS7B01G261100 chr3D 76.880 359 54 14 2139 2493 549489091 549488758 2.590000e-40 176
39 TraesCS7B01G261100 chr2A 86.772 189 21 4 1952 2138 226684393 226684207 9.170000e-50 207
40 TraesCS7B01G261100 chr2A 74.148 352 58 23 2142 2491 5907814 5907494 5.720000e-22 115
41 TraesCS7B01G261100 chr3B 75.843 356 59 19 2139 2493 174455560 174455889 3.370000e-34 156
42 TraesCS7B01G261100 chr5A 79.348 184 37 1 2135 2318 609294190 609294008 7.340000e-26 128
43 TraesCS7B01G261100 chr2B 80.795 151 14 13 2137 2282 212109961 212110101 1.240000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G261100 chr7B 481659653 481662181 2528 False 4671 4671 100.000000 1 2529 1 chr7B.!!$F1 2528
1 TraesCS7B01G261100 chr7D 459475200 459476444 1244 False 840 1301 91.641500 663 1939 2 chr7D.!!$F3 1276
2 TraesCS7B01G261100 chr7A 540746883 540748964 2081 True 365 488 86.302667 709 2515 3 chr7A.!!$R3 1806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
572 573 0.033601 TCAAAATGGGTCGGATGGGG 60.034 55.0 0.0 0.0 0.0 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2012 2083 0.036858 GTGCTCCTCTTCCTGGACAC 60.037 60.0 0.0 0.0 32.78 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 2.372688 CCTCCAGCCCTTCCCCTA 59.627 66.667 0.00 0.00 0.00 3.53
80 81 1.073397 CCTCCAGCCCTTCCCCTAT 60.073 63.158 0.00 0.00 0.00 2.57
81 82 1.130678 CCTCCAGCCCTTCCCCTATC 61.131 65.000 0.00 0.00 0.00 2.08
82 83 1.459539 TCCAGCCCTTCCCCTATCG 60.460 63.158 0.00 0.00 0.00 2.92
83 84 2.520536 CCAGCCCTTCCCCTATCGG 61.521 68.421 0.00 0.00 0.00 4.18
84 85 1.766461 CAGCCCTTCCCCTATCGGT 60.766 63.158 0.00 0.00 0.00 4.69
85 86 1.766461 AGCCCTTCCCCTATCGGTG 60.766 63.158 0.00 0.00 0.00 4.94
86 87 2.829592 CCCTTCCCCTATCGGTGC 59.170 66.667 0.00 0.00 0.00 5.01
87 88 1.766461 CCCTTCCCCTATCGGTGCT 60.766 63.158 0.00 0.00 0.00 4.40
88 89 1.749033 CCTTCCCCTATCGGTGCTC 59.251 63.158 0.00 0.00 0.00 4.26
89 90 1.749033 CTTCCCCTATCGGTGCTCC 59.251 63.158 0.00 0.00 0.00 4.70
90 91 1.759459 CTTCCCCTATCGGTGCTCCC 61.759 65.000 0.00 0.00 0.00 4.30
91 92 3.242291 CCCCTATCGGTGCTCCCC 61.242 72.222 0.00 0.00 0.00 4.81
128 129 4.821589 CGGGAGGTGCTCTTCGGC 62.822 72.222 0.00 0.00 0.00 5.54
129 130 4.821589 GGGAGGTGCTCTTCGGCG 62.822 72.222 0.00 0.00 34.52 6.46
130 131 4.821589 GGAGGTGCTCTTCGGCGG 62.822 72.222 7.21 0.00 34.52 6.13
169 170 4.286320 GAGATCCCGATGCGGCGT 62.286 66.667 9.37 0.00 46.86 5.68
170 171 4.592192 AGATCCCGATGCGGCGTG 62.592 66.667 9.37 0.00 46.86 5.34
177 178 4.856801 GATGCGGCGTGGGTGGAT 62.857 66.667 9.37 0.00 0.00 3.41
181 182 4.082523 CGGCGTGGGTGGATGACT 62.083 66.667 0.00 0.00 0.00 3.41
182 183 2.436646 GGCGTGGGTGGATGACTG 60.437 66.667 0.00 0.00 0.00 3.51
183 184 2.436646 GCGTGGGTGGATGACTGG 60.437 66.667 0.00 0.00 0.00 4.00
184 185 2.268920 CGTGGGTGGATGACTGGG 59.731 66.667 0.00 0.00 0.00 4.45
185 186 2.044946 GTGGGTGGATGACTGGGC 60.045 66.667 0.00 0.00 0.00 5.36
186 187 3.716195 TGGGTGGATGACTGGGCG 61.716 66.667 0.00 0.00 0.00 6.13
187 188 3.399181 GGGTGGATGACTGGGCGA 61.399 66.667 0.00 0.00 0.00 5.54
188 189 2.125106 GGTGGATGACTGGGCGAC 60.125 66.667 0.00 0.00 0.00 5.19
189 190 2.509336 GTGGATGACTGGGCGACG 60.509 66.667 0.00 0.00 0.00 5.12
190 191 3.770040 TGGATGACTGGGCGACGG 61.770 66.667 0.00 0.00 0.00 4.79
236 237 3.726517 CGGCGTGGCTTGAACCAG 61.727 66.667 0.00 0.00 41.46 4.00
237 238 4.043200 GGCGTGGCTTGAACCAGC 62.043 66.667 0.00 0.00 41.46 4.85
243 244 3.435186 GCTTGAACCAGCCCGCTC 61.435 66.667 0.00 0.00 33.21 5.03
244 245 3.121030 CTTGAACCAGCCCGCTCG 61.121 66.667 0.00 0.00 0.00 5.03
245 246 4.697756 TTGAACCAGCCCGCTCGG 62.698 66.667 0.48 0.48 0.00 4.63
255 256 4.598894 CCGCTCGGCCCAGATCTG 62.599 72.222 16.24 16.24 0.00 2.90
264 265 4.672251 CCAGATCTGGGCCCTTTG 57.328 61.111 31.14 13.48 46.81 2.77
265 266 1.076485 CCAGATCTGGGCCCTTTGG 60.076 63.158 31.14 18.29 46.81 3.28
266 267 2.578586 CCAGATCTGGGCCCTTTGGG 62.579 65.000 31.14 13.16 46.81 4.12
275 276 2.042639 CCCTTTGGGCCCCATCTG 60.043 66.667 22.27 3.64 35.35 2.90
276 277 2.042639 CCTTTGGGCCCCATCTGG 60.043 66.667 22.27 10.70 31.53 3.86
286 287 2.755469 CCATCTGGGTTTGGGCGG 60.755 66.667 0.00 0.00 0.00 6.13
287 288 2.755469 CATCTGGGTTTGGGCGGG 60.755 66.667 0.00 0.00 0.00 6.13
288 289 4.759205 ATCTGGGTTTGGGCGGGC 62.759 66.667 0.00 0.00 0.00 6.13
380 381 4.569023 CGCGGTCGCTCAGGCATA 62.569 66.667 13.51 0.00 39.32 3.14
381 382 2.659897 GCGGTCGCTCAGGCATAG 60.660 66.667 8.20 0.00 38.60 2.23
382 383 2.808315 CGGTCGCTCAGGCATAGT 59.192 61.111 0.00 0.00 38.60 2.12
383 384 1.141881 CGGTCGCTCAGGCATAGTT 59.858 57.895 0.00 0.00 38.60 2.24
384 385 0.872021 CGGTCGCTCAGGCATAGTTC 60.872 60.000 0.00 0.00 38.60 3.01
385 386 0.175760 GGTCGCTCAGGCATAGTTCA 59.824 55.000 0.00 0.00 38.60 3.18
386 387 1.281899 GTCGCTCAGGCATAGTTCAC 58.718 55.000 0.00 0.00 38.60 3.18
387 388 0.175760 TCGCTCAGGCATAGTTCACC 59.824 55.000 0.00 0.00 38.60 4.02
388 389 0.108186 CGCTCAGGCATAGTTCACCA 60.108 55.000 0.00 0.00 38.60 4.17
389 390 1.473965 CGCTCAGGCATAGTTCACCAT 60.474 52.381 0.00 0.00 38.60 3.55
390 391 2.216898 GCTCAGGCATAGTTCACCATC 58.783 52.381 0.00 0.00 38.54 3.51
391 392 2.158842 GCTCAGGCATAGTTCACCATCT 60.159 50.000 0.00 0.00 38.54 2.90
392 393 3.683847 GCTCAGGCATAGTTCACCATCTT 60.684 47.826 0.00 0.00 38.54 2.40
393 394 4.521146 CTCAGGCATAGTTCACCATCTTT 58.479 43.478 0.00 0.00 0.00 2.52
394 395 4.517285 TCAGGCATAGTTCACCATCTTTC 58.483 43.478 0.00 0.00 0.00 2.62
395 396 4.225942 TCAGGCATAGTTCACCATCTTTCT 59.774 41.667 0.00 0.00 0.00 2.52
396 397 4.334759 CAGGCATAGTTCACCATCTTTCTG 59.665 45.833 0.00 0.00 0.00 3.02
397 398 3.629398 GGCATAGTTCACCATCTTTCTGG 59.371 47.826 0.00 0.00 42.35 3.86
399 400 4.333926 GCATAGTTCACCATCTTTCTGGTC 59.666 45.833 0.00 0.00 46.79 4.02
400 401 3.425162 AGTTCACCATCTTTCTGGTCC 57.575 47.619 0.00 0.00 46.79 4.46
401 402 2.040412 AGTTCACCATCTTTCTGGTCCC 59.960 50.000 0.00 0.00 46.79 4.46
402 403 0.613260 TCACCATCTTTCTGGTCCCG 59.387 55.000 0.00 0.00 46.79 5.14
403 404 0.613260 CACCATCTTTCTGGTCCCGA 59.387 55.000 0.00 0.00 46.79 5.14
404 405 0.613777 ACCATCTTTCTGGTCCCGAC 59.386 55.000 0.00 0.00 46.79 4.79
405 406 0.613260 CCATCTTTCTGGTCCCGACA 59.387 55.000 0.00 0.00 0.00 4.35
406 407 1.406069 CCATCTTTCTGGTCCCGACAG 60.406 57.143 0.00 0.00 37.30 3.51
407 408 0.905357 ATCTTTCTGGTCCCGACAGG 59.095 55.000 0.00 0.00 36.62 4.00
408 409 1.376037 CTTTCTGGTCCCGACAGGC 60.376 63.158 0.00 0.00 36.62 4.85
409 410 3.234630 TTTCTGGTCCCGACAGGCG 62.235 63.158 0.00 0.00 36.62 5.52
410 411 4.988716 TCTGGTCCCGACAGGCGT 62.989 66.667 0.00 0.00 38.67 5.68
411 412 4.742201 CTGGTCCCGACAGGCGTG 62.742 72.222 4.53 4.53 38.67 5.34
417 418 4.680237 CCGACAGGCGTGCTCCAA 62.680 66.667 6.26 0.00 38.67 3.53
418 419 3.414700 CGACAGGCGTGCTCCAAC 61.415 66.667 6.26 0.00 34.64 3.77
419 420 2.031163 GACAGGCGTGCTCCAACT 59.969 61.111 6.26 0.00 0.00 3.16
420 421 2.029844 GACAGGCGTGCTCCAACTC 61.030 63.158 6.26 0.00 0.00 3.01
421 422 3.114616 CAGGCGTGCTCCAACTCG 61.115 66.667 0.00 0.00 0.00 4.18
422 423 3.303135 AGGCGTGCTCCAACTCGA 61.303 61.111 0.00 0.00 0.00 4.04
423 424 2.357034 GGCGTGCTCCAACTCGAA 60.357 61.111 0.00 0.00 0.00 3.71
424 425 2.668280 GGCGTGCTCCAACTCGAAC 61.668 63.158 0.00 0.00 0.00 3.95
425 426 2.668280 GCGTGCTCCAACTCGAACC 61.668 63.158 0.00 0.00 0.00 3.62
426 427 2.027625 CGTGCTCCAACTCGAACCC 61.028 63.158 0.00 0.00 0.00 4.11
427 428 1.371558 GTGCTCCAACTCGAACCCT 59.628 57.895 0.00 0.00 0.00 4.34
428 429 0.250338 GTGCTCCAACTCGAACCCTT 60.250 55.000 0.00 0.00 0.00 3.95
429 430 0.034896 TGCTCCAACTCGAACCCTTC 59.965 55.000 0.00 0.00 0.00 3.46
430 431 0.034896 GCTCCAACTCGAACCCTTCA 59.965 55.000 0.00 0.00 0.00 3.02
431 432 1.542547 GCTCCAACTCGAACCCTTCAA 60.543 52.381 0.00 0.00 0.00 2.69
432 433 2.846193 CTCCAACTCGAACCCTTCAAA 58.154 47.619 0.00 0.00 0.00 2.69
433 434 2.808543 CTCCAACTCGAACCCTTCAAAG 59.191 50.000 0.00 0.00 0.00 2.77
434 435 2.436542 TCCAACTCGAACCCTTCAAAGA 59.563 45.455 0.00 0.00 0.00 2.52
435 436 3.118186 TCCAACTCGAACCCTTCAAAGAA 60.118 43.478 0.00 0.00 0.00 2.52
436 437 3.251004 CCAACTCGAACCCTTCAAAGAAG 59.749 47.826 0.00 0.00 0.00 2.85
437 438 4.127171 CAACTCGAACCCTTCAAAGAAGA 58.873 43.478 8.26 0.00 0.00 2.87
438 439 4.625607 ACTCGAACCCTTCAAAGAAGAT 57.374 40.909 8.26 0.00 0.00 2.40
439 440 4.570930 ACTCGAACCCTTCAAAGAAGATC 58.429 43.478 8.26 3.55 0.00 2.75
440 441 4.284746 ACTCGAACCCTTCAAAGAAGATCT 59.715 41.667 8.26 0.00 0.00 2.75
441 442 4.569943 TCGAACCCTTCAAAGAAGATCTG 58.430 43.478 8.26 0.00 0.00 2.90
442 443 3.686726 CGAACCCTTCAAAGAAGATCTGG 59.313 47.826 8.26 3.79 0.00 3.86
443 444 3.728385 ACCCTTCAAAGAAGATCTGGG 57.272 47.619 8.26 8.58 39.26 4.45
444 445 2.989571 ACCCTTCAAAGAAGATCTGGGT 59.010 45.455 9.74 9.74 41.39 4.51
445 446 3.009584 ACCCTTCAAAGAAGATCTGGGTC 59.990 47.826 9.74 0.00 42.42 4.46
446 447 3.265791 CCTTCAAAGAAGATCTGGGTCG 58.734 50.000 8.26 0.00 0.00 4.79
447 448 3.265791 CTTCAAAGAAGATCTGGGTCGG 58.734 50.000 0.00 0.00 0.00 4.79
448 449 1.066143 TCAAAGAAGATCTGGGTCGGC 60.066 52.381 0.00 0.00 0.00 5.54
449 450 0.253327 AAAGAAGATCTGGGTCGGCC 59.747 55.000 0.00 0.00 0.00 6.13
450 451 0.909610 AAGAAGATCTGGGTCGGCCA 60.910 55.000 9.07 0.00 36.17 5.36
451 452 1.144936 GAAGATCTGGGTCGGCCAG 59.855 63.158 9.07 3.46 36.17 4.85
452 453 2.932130 GAAGATCTGGGTCGGCCAGC 62.932 65.000 9.07 0.00 35.48 4.85
453 454 4.899239 GATCTGGGTCGGCCAGCG 62.899 72.222 9.07 0.00 35.48 5.18
487 488 3.764466 CCTCCCGCTCGTCAGCTT 61.764 66.667 0.00 0.00 44.40 3.74
488 489 2.202676 CTCCCGCTCGTCAGCTTC 60.203 66.667 0.00 0.00 44.40 3.86
489 490 3.708220 CTCCCGCTCGTCAGCTTCC 62.708 68.421 0.00 0.00 44.40 3.46
490 491 3.764466 CCCGCTCGTCAGCTTCCT 61.764 66.667 0.00 0.00 44.40 3.36
491 492 2.262915 CCGCTCGTCAGCTTCCTT 59.737 61.111 0.00 0.00 44.40 3.36
492 493 2.097038 CCGCTCGTCAGCTTCCTTG 61.097 63.158 0.00 0.00 44.40 3.61
493 494 2.734673 CGCTCGTCAGCTTCCTTGC 61.735 63.158 0.00 0.00 44.40 4.01
494 495 2.734673 GCTCGTCAGCTTCCTTGCG 61.735 63.158 0.00 0.00 43.09 4.85
495 496 2.734673 CTCGTCAGCTTCCTTGCGC 61.735 63.158 0.00 0.00 38.13 6.09
496 497 3.043713 CGTCAGCTTCCTTGCGCA 61.044 61.111 5.66 5.66 38.13 6.09
497 498 2.393768 CGTCAGCTTCCTTGCGCAT 61.394 57.895 12.75 0.00 38.13 4.73
498 499 1.427020 GTCAGCTTCCTTGCGCATC 59.573 57.895 12.75 0.00 38.13 3.91
499 500 1.746615 TCAGCTTCCTTGCGCATCC 60.747 57.895 12.75 0.00 38.13 3.51
500 501 2.439156 AGCTTCCTTGCGCATCCC 60.439 61.111 12.75 0.00 38.13 3.85
501 502 2.751436 GCTTCCTTGCGCATCCCA 60.751 61.111 12.75 0.00 0.00 4.37
502 503 2.768492 GCTTCCTTGCGCATCCCAG 61.768 63.158 12.75 5.15 0.00 4.45
503 504 2.045045 TTCCTTGCGCATCCCAGG 60.045 61.111 18.01 18.01 0.00 4.45
504 505 2.826777 CTTCCTTGCGCATCCCAGGT 62.827 60.000 22.01 0.00 0.00 4.00
505 506 2.361610 CCTTGCGCATCCCAGGTT 60.362 61.111 12.75 0.00 0.00 3.50
506 507 1.978617 CCTTGCGCATCCCAGGTTT 60.979 57.895 12.75 0.00 0.00 3.27
507 508 1.535204 CCTTGCGCATCCCAGGTTTT 61.535 55.000 12.75 0.00 0.00 2.43
508 509 1.173043 CTTGCGCATCCCAGGTTTTA 58.827 50.000 12.75 0.00 0.00 1.52
509 510 1.133025 CTTGCGCATCCCAGGTTTTAG 59.867 52.381 12.75 0.00 0.00 1.85
510 511 0.326595 TGCGCATCCCAGGTTTTAGA 59.673 50.000 5.66 0.00 0.00 2.10
511 512 1.271652 TGCGCATCCCAGGTTTTAGAA 60.272 47.619 5.66 0.00 0.00 2.10
512 513 1.132453 GCGCATCCCAGGTTTTAGAAC 59.868 52.381 0.30 0.00 34.96 3.01
523 524 1.981533 GTTTTAGAACCCGTCGACTCG 59.018 52.381 14.70 5.58 0.00 4.18
524 525 0.109597 TTTAGAACCCGTCGACTCGC 60.110 55.000 14.70 0.00 0.00 5.03
525 526 1.236616 TTAGAACCCGTCGACTCGCA 61.237 55.000 14.70 0.00 0.00 5.10
526 527 1.915614 TAGAACCCGTCGACTCGCAC 61.916 60.000 14.70 2.61 0.00 5.34
527 528 4.695231 AACCCGTCGACTCGCACG 62.695 66.667 14.70 13.22 35.72 5.34
544 545 2.832931 CGCAAGTCAGACTCCTTGG 58.167 57.895 2.72 0.00 38.76 3.61
545 546 0.034059 CGCAAGTCAGACTCCTTGGT 59.966 55.000 2.72 0.00 38.76 3.67
546 547 1.802069 GCAAGTCAGACTCCTTGGTC 58.198 55.000 2.72 0.00 38.76 4.02
547 548 1.609320 GCAAGTCAGACTCCTTGGTCC 60.609 57.143 2.72 0.00 38.76 4.46
548 549 0.969894 AAGTCAGACTCCTTGGTCCG 59.030 55.000 2.72 0.00 36.95 4.79
549 550 0.178958 AGTCAGACTCCTTGGTCCGT 60.179 55.000 0.00 0.00 36.95 4.69
550 551 0.038159 GTCAGACTCCTTGGTCCGTG 60.038 60.000 0.00 0.00 36.95 4.94
551 552 0.469331 TCAGACTCCTTGGTCCGTGT 60.469 55.000 0.00 0.00 36.95 4.49
552 553 0.393077 CAGACTCCTTGGTCCGTGTT 59.607 55.000 0.00 0.00 36.95 3.32
553 554 1.129058 AGACTCCTTGGTCCGTGTTT 58.871 50.000 0.00 0.00 36.95 2.83
554 555 1.070289 AGACTCCTTGGTCCGTGTTTC 59.930 52.381 0.00 0.00 36.95 2.78
555 556 0.834612 ACTCCTTGGTCCGTGTTTCA 59.165 50.000 0.00 0.00 0.00 2.69
556 557 1.210967 ACTCCTTGGTCCGTGTTTCAA 59.789 47.619 0.00 0.00 0.00 2.69
557 558 2.294074 CTCCTTGGTCCGTGTTTCAAA 58.706 47.619 0.00 0.00 0.00 2.69
558 559 2.685897 CTCCTTGGTCCGTGTTTCAAAA 59.314 45.455 0.00 0.00 0.00 2.44
559 560 3.292460 TCCTTGGTCCGTGTTTCAAAAT 58.708 40.909 0.00 0.00 0.00 1.82
560 561 3.067461 TCCTTGGTCCGTGTTTCAAAATG 59.933 43.478 0.00 0.00 0.00 2.32
561 562 3.380142 CTTGGTCCGTGTTTCAAAATGG 58.620 45.455 0.00 0.00 0.00 3.16
562 563 1.683917 TGGTCCGTGTTTCAAAATGGG 59.316 47.619 0.00 0.00 0.00 4.00
563 564 1.684450 GGTCCGTGTTTCAAAATGGGT 59.316 47.619 0.00 0.00 0.00 4.51
564 565 2.287970 GGTCCGTGTTTCAAAATGGGTC 60.288 50.000 0.00 0.00 0.00 4.46
565 566 1.604755 TCCGTGTTTCAAAATGGGTCG 59.395 47.619 0.00 0.00 0.00 4.79
566 567 1.335506 CCGTGTTTCAAAATGGGTCGG 60.336 52.381 0.00 0.00 0.00 4.79
567 568 1.604755 CGTGTTTCAAAATGGGTCGGA 59.395 47.619 0.00 0.00 0.00 4.55
568 569 2.227865 CGTGTTTCAAAATGGGTCGGAT 59.772 45.455 0.00 0.00 0.00 4.18
569 570 3.574614 GTGTTTCAAAATGGGTCGGATG 58.425 45.455 0.00 0.00 0.00 3.51
570 571 2.560542 TGTTTCAAAATGGGTCGGATGG 59.439 45.455 0.00 0.00 0.00 3.51
571 572 1.846007 TTCAAAATGGGTCGGATGGG 58.154 50.000 0.00 0.00 0.00 4.00
572 573 0.033601 TCAAAATGGGTCGGATGGGG 60.034 55.000 0.00 0.00 0.00 4.96
573 574 0.033601 CAAAATGGGTCGGATGGGGA 60.034 55.000 0.00 0.00 0.00 4.81
574 575 0.258774 AAAATGGGTCGGATGGGGAG 59.741 55.000 0.00 0.00 0.00 4.30
575 576 2.284515 AAATGGGTCGGATGGGGAGC 62.285 60.000 0.00 0.00 0.00 4.70
617 618 4.016706 CCCGAGGGACACGCCTTT 62.017 66.667 0.84 0.00 42.01 3.11
618 619 2.434359 CCGAGGGACACGCCTTTC 60.434 66.667 0.00 0.00 42.01 2.62
619 620 2.809601 CGAGGGACACGCCTTTCG 60.810 66.667 0.00 0.00 45.38 3.46
620 621 2.434359 GAGGGACACGCCTTTCGG 60.434 66.667 0.00 0.00 43.86 4.30
678 679 1.185618 ACCTACGCTGAACCTGCTCA 61.186 55.000 0.00 0.00 0.00 4.26
685 686 0.321122 CTGAACCTGCTCACTGGGAC 60.321 60.000 0.00 0.00 39.16 4.46
697 698 4.626287 GCTCACTGGGACCAAGATATTTGA 60.626 45.833 1.72 0.00 0.00 2.69
706 707 4.265073 ACCAAGATATTTGACACCTCTGC 58.735 43.478 0.84 0.00 0.00 4.26
834 842 7.147915 ACACATGCCTTAATTTCATACGGAATT 60.148 33.333 0.00 0.00 34.91 2.17
838 846 6.183360 TGCCTTAATTTCATACGGAATTGTCC 60.183 38.462 0.00 0.00 41.01 4.02
873 890 3.458163 GGATCTGGACGGACGCCA 61.458 66.667 7.44 7.44 0.00 5.69
914 931 7.679783 TCACACTGCAGGTTATATATAGCATT 58.320 34.615 19.93 0.16 0.00 3.56
915 932 8.156820 TCACACTGCAGGTTATATATAGCATTT 58.843 33.333 19.93 0.00 0.00 2.32
925 944 7.338710 GTTATATATAGCATTTGAGGGAGGCA 58.661 38.462 1.99 0.00 0.00 4.75
931 950 0.034670 ATTTGAGGGAGGCAGTGAGC 60.035 55.000 0.00 0.00 44.65 4.26
952 971 2.223203 CCATCACAGATCAGCTTTTCGC 60.223 50.000 0.00 0.00 39.57 4.70
1027 1053 3.066233 GCTCCCCGGTCGTCTCTTC 62.066 68.421 0.00 0.00 0.00 2.87
1154 1186 2.106332 CGGTGATAGTCCGGCCAC 59.894 66.667 2.24 0.00 43.68 5.01
1234 1266 2.291465 TGTTTGTGCTGTTGATCTCTGC 59.709 45.455 11.17 11.17 0.00 4.26
1279 1311 2.258591 GCAGCTTCGTCGTCTGGA 59.741 61.111 11.58 0.00 0.00 3.86
1297 1329 0.527385 GATCTGGCTCGACTCACAGC 60.527 60.000 0.00 0.00 34.65 4.40
1306 1338 3.655810 GACTCACAGCGCCCCTCTG 62.656 68.421 2.29 0.00 37.56 3.35
1341 1373 6.939163 AGCAGAAGATTTAGACATGTTGAACT 59.061 34.615 0.00 0.00 0.00 3.01
1352 1384 5.066505 AGACATGTTGAACTTGAACCTGAAC 59.933 40.000 16.73 0.00 0.00 3.18
1360 1392 0.110486 TTGAACCTGAACCTGAGGGC 59.890 55.000 2.38 0.00 34.56 5.19
1365 1397 1.273838 ACCTGAACCTGAGGGCTCATA 60.274 52.381 2.38 0.00 37.13 2.15
1372 1404 1.764723 CCTGAGGGCTCATATCACACA 59.235 52.381 0.00 0.00 39.13 3.72
1397 1429 5.947228 TGGACATGAAACTGACAAGATTC 57.053 39.130 0.00 0.00 36.13 2.52
1477 1509 1.407618 CAACCTGTATCGGACGATCCA 59.592 52.381 10.82 5.13 35.91 3.41
1508 1540 2.281484 GCAAAGACCCGAGGCACA 60.281 61.111 0.00 0.00 0.00 4.57
1543 1575 4.175337 TAGGGCCTGTGCGATGCC 62.175 66.667 18.53 0.00 44.59 4.40
1568 1600 5.917447 GGAGAAGTTGAGATTTTTCTTGTGC 59.083 40.000 0.00 0.00 30.49 4.57
1627 1659 7.201696 CGTTAATTGTAATTGGCTCCTACACAT 60.202 37.037 0.27 0.00 0.00 3.21
1651 1683 6.862209 TCATGTATTCCCAAATTGTTAGCAC 58.138 36.000 0.00 0.00 0.00 4.40
1653 1685 4.464597 TGTATTCCCAAATTGTTAGCACCC 59.535 41.667 0.00 0.00 0.00 4.61
1661 1693 0.988832 TTGTTAGCACCCGATCCCTT 59.011 50.000 0.00 0.00 0.00 3.95
1662 1694 1.868713 TGTTAGCACCCGATCCCTTA 58.131 50.000 0.00 0.00 0.00 2.69
1667 1699 0.250901 GCACCCGATCCCTTATGCAT 60.251 55.000 3.79 3.79 33.27 3.96
1668 1700 1.813513 CACCCGATCCCTTATGCATC 58.186 55.000 0.19 0.00 0.00 3.91
1669 1701 1.349026 CACCCGATCCCTTATGCATCT 59.651 52.381 0.19 0.00 0.00 2.90
1670 1702 2.057922 ACCCGATCCCTTATGCATCTT 58.942 47.619 0.19 0.00 0.00 2.40
1735 1767 0.663269 CTTTCGCGGAAAGGCCAAAC 60.663 55.000 17.72 0.00 43.50 2.93
1819 1851 2.671396 CCAGTCTTTGGGTAAATCGACG 59.329 50.000 0.00 0.00 43.75 5.12
1820 1852 3.581755 CAGTCTTTGGGTAAATCGACGA 58.418 45.455 0.00 0.00 30.50 4.20
1821 1853 4.181578 CAGTCTTTGGGTAAATCGACGAT 58.818 43.478 4.05 4.05 30.50 3.73
1822 1854 5.345702 CAGTCTTTGGGTAAATCGACGATA 58.654 41.667 11.42 0.00 30.50 2.92
1879 1911 1.156736 AAGTTCGATGCCGTCTTTGG 58.843 50.000 0.00 0.00 37.05 3.28
1882 1914 1.136057 GTTCGATGCCGTCTTTGGAAC 60.136 52.381 0.00 0.00 37.05 3.62
1905 1937 4.711399 TCTGAAATACCATCAGAGCCATG 58.289 43.478 2.27 0.00 46.23 3.66
1910 1942 2.134789 ACCATCAGAGCCATGGAAAC 57.865 50.000 18.40 5.49 43.32 2.78
1911 1943 1.355381 ACCATCAGAGCCATGGAAACA 59.645 47.619 18.40 0.00 43.32 2.83
1926 1958 0.660488 AAACATTGTTGACGCAGCGA 59.340 45.000 24.65 0.00 0.00 4.93
1931 1963 2.506217 GTTGACGCAGCGATCGGA 60.506 61.111 24.65 5.59 0.00 4.55
1934 1966 0.946700 TTGACGCAGCGATCGGAAAA 60.947 50.000 24.65 3.10 0.00 2.29
1943 2013 3.489416 CAGCGATCGGAAAATTATGTCGA 59.511 43.478 18.30 0.00 0.00 4.20
1944 2014 4.026062 CAGCGATCGGAAAATTATGTCGAA 60.026 41.667 18.30 0.00 33.53 3.71
1998 2069 3.200918 AAAAAGACAGTTGGCGGGT 57.799 47.368 0.00 0.00 0.00 5.28
1999 2070 1.029681 AAAAAGACAGTTGGCGGGTC 58.970 50.000 0.00 0.00 0.00 4.46
2000 2071 0.182775 AAAAGACAGTTGGCGGGTCT 59.817 50.000 0.00 0.00 43.35 3.85
2001 2072 0.250338 AAAGACAGTTGGCGGGTCTC 60.250 55.000 0.00 0.00 40.80 3.36
2002 2073 1.122019 AAGACAGTTGGCGGGTCTCT 61.122 55.000 0.00 0.00 40.80 3.10
2003 2074 1.122019 AGACAGTTGGCGGGTCTCTT 61.122 55.000 0.00 0.00 37.31 2.85
2004 2075 0.250338 GACAGTTGGCGGGTCTCTTT 60.250 55.000 0.00 0.00 0.00 2.52
2005 2076 0.535102 ACAGTTGGCGGGTCTCTTTG 60.535 55.000 0.00 0.00 0.00 2.77
2006 2077 0.535102 CAGTTGGCGGGTCTCTTTGT 60.535 55.000 0.00 0.00 0.00 2.83
2007 2078 1.053424 AGTTGGCGGGTCTCTTTGTA 58.947 50.000 0.00 0.00 0.00 2.41
2008 2079 1.628846 AGTTGGCGGGTCTCTTTGTAT 59.371 47.619 0.00 0.00 0.00 2.29
2009 2080 1.737793 GTTGGCGGGTCTCTTTGTATG 59.262 52.381 0.00 0.00 0.00 2.39
2010 2081 0.981183 TGGCGGGTCTCTTTGTATGT 59.019 50.000 0.00 0.00 0.00 2.29
2011 2082 1.066430 TGGCGGGTCTCTTTGTATGTC 60.066 52.381 0.00 0.00 0.00 3.06
2012 2083 1.278238 GCGGGTCTCTTTGTATGTCG 58.722 55.000 0.00 0.00 0.00 4.35
2013 2084 1.403780 GCGGGTCTCTTTGTATGTCGT 60.404 52.381 0.00 0.00 0.00 4.34
2014 2085 2.259618 CGGGTCTCTTTGTATGTCGTG 58.740 52.381 0.00 0.00 0.00 4.35
2015 2086 2.352421 CGGGTCTCTTTGTATGTCGTGT 60.352 50.000 0.00 0.00 0.00 4.49
2016 2087 3.251571 GGGTCTCTTTGTATGTCGTGTC 58.748 50.000 0.00 0.00 0.00 3.67
2017 2088 3.251571 GGTCTCTTTGTATGTCGTGTCC 58.748 50.000 0.00 0.00 0.00 4.02
2018 2089 3.305813 GGTCTCTTTGTATGTCGTGTCCA 60.306 47.826 0.00 0.00 0.00 4.02
2019 2090 3.921021 GTCTCTTTGTATGTCGTGTCCAG 59.079 47.826 0.00 0.00 0.00 3.86
2020 2091 3.056821 TCTCTTTGTATGTCGTGTCCAGG 60.057 47.826 0.00 0.00 0.00 4.45
2021 2092 2.894765 TCTTTGTATGTCGTGTCCAGGA 59.105 45.455 0.00 0.00 0.00 3.86
2022 2093 3.322541 TCTTTGTATGTCGTGTCCAGGAA 59.677 43.478 0.00 0.00 0.00 3.36
2023 2094 3.313012 TTGTATGTCGTGTCCAGGAAG 57.687 47.619 0.00 0.00 0.00 3.46
2024 2095 2.521126 TGTATGTCGTGTCCAGGAAGA 58.479 47.619 0.00 0.00 0.00 2.87
2025 2096 2.492088 TGTATGTCGTGTCCAGGAAGAG 59.508 50.000 0.00 0.00 0.00 2.85
2026 2097 0.898320 ATGTCGTGTCCAGGAAGAGG 59.102 55.000 0.00 0.00 0.00 3.69
2027 2098 0.178973 TGTCGTGTCCAGGAAGAGGA 60.179 55.000 0.00 0.00 0.00 3.71
2028 2099 0.528470 GTCGTGTCCAGGAAGAGGAG 59.472 60.000 0.00 0.00 35.42 3.69
2029 2100 1.216710 CGTGTCCAGGAAGAGGAGC 59.783 63.158 0.00 0.00 35.42 4.70
2030 2101 1.536073 CGTGTCCAGGAAGAGGAGCA 61.536 60.000 0.00 0.00 35.42 4.26
2031 2102 0.036858 GTGTCCAGGAAGAGGAGCAC 60.037 60.000 0.00 0.00 35.42 4.40
2032 2103 0.178921 TGTCCAGGAAGAGGAGCACT 60.179 55.000 0.00 0.00 35.42 4.40
2033 2104 0.980423 GTCCAGGAAGAGGAGCACTT 59.020 55.000 0.00 0.00 35.42 3.16
2034 2105 0.979665 TCCAGGAAGAGGAGCACTTG 59.020 55.000 0.00 0.00 0.00 3.16
2046 2117 6.656902 AGAGGAGCACTTGATGATTTATTCA 58.343 36.000 0.00 0.00 39.12 2.57
2050 2121 7.778853 AGGAGCACTTGATGATTTATTCATTCT 59.221 33.333 0.00 0.00 45.29 2.40
2076 2147 8.429641 TCTGGAACTAGAAGTAGAAATTGTTGT 58.570 33.333 0.00 0.00 0.00 3.32
2113 2186 8.928733 CATGTAAAAACATCTTTTGAGGAATGG 58.071 33.333 0.00 0.00 33.91 3.16
2115 2188 6.499106 AAAAACATCTTTTGAGGAATGGGT 57.501 33.333 0.00 0.00 33.91 4.51
2122 2195 3.652057 TTTGAGGAATGGGTCAGATCC 57.348 47.619 0.00 0.00 0.00 3.36
2135 2208 3.452474 GTCAGATCCGACCATTTCTCAG 58.548 50.000 0.00 0.00 0.00 3.35
2142 2215 2.419297 CCGACCATTTCTCAGAAGGGAG 60.419 54.545 12.82 7.12 34.67 4.30
2159 2700 8.624776 CAGAAGGGAGAATATCACATAAAAACC 58.375 37.037 0.00 0.00 31.63 3.27
2189 2730 8.568732 TTCAATTAAAACTTCGTGGAAATCAC 57.431 30.769 0.00 0.00 42.74 3.06
2253 2794 8.213518 TGTTAAGAAGATGATGTTCTATTGCC 57.786 34.615 5.19 0.00 32.93 4.52
2258 2799 4.466827 AGATGATGTTCTATTGCCATGCA 58.533 39.130 0.00 0.00 36.47 3.96
2282 2823 7.850492 GCAAAATTCCAAGTTGAAACACATTAC 59.150 33.333 3.87 0.00 0.00 1.89
2283 2824 8.877779 CAAAATTCCAAGTTGAAACACATTACA 58.122 29.630 3.87 0.00 0.00 2.41
2284 2825 9.612066 AAAATTCCAAGTTGAAACACATTACAT 57.388 25.926 3.87 0.00 0.00 2.29
2312 2855 7.359595 TGTGAGTTATGAGAAAACCAAATTCG 58.640 34.615 0.00 0.00 32.04 3.34
2327 2870 5.995282 ACCAAATTCGACAATACAGAGTGAA 59.005 36.000 0.00 0.00 0.00 3.18
2328 2871 6.655003 ACCAAATTCGACAATACAGAGTGAAT 59.345 34.615 0.00 0.00 0.00 2.57
2329 2872 6.963242 CCAAATTCGACAATACAGAGTGAATG 59.037 38.462 0.00 0.00 0.00 2.67
2330 2873 7.361201 CCAAATTCGACAATACAGAGTGAATGT 60.361 37.037 0.00 0.00 34.62 2.71
2331 2874 7.672983 AATTCGACAATACAGAGTGAATGTT 57.327 32.000 0.00 0.00 32.02 2.71
2332 2875 8.771920 AATTCGACAATACAGAGTGAATGTTA 57.228 30.769 0.00 0.00 32.02 2.41
2333 2876 8.948631 ATTCGACAATACAGAGTGAATGTTAT 57.051 30.769 0.00 0.00 32.02 1.89
2334 2877 8.771920 TTCGACAATACAGAGTGAATGTTATT 57.228 30.769 0.00 0.00 32.02 1.40
2335 2878 8.185003 TCGACAATACAGAGTGAATGTTATTG 57.815 34.615 0.00 0.00 33.15 1.90
2336 2879 7.817478 TCGACAATACAGAGTGAATGTTATTGT 59.183 33.333 4.82 4.82 37.45 2.71
2337 2880 8.443160 CGACAATACAGAGTGAATGTTATTGTT 58.557 33.333 6.31 0.00 36.34 2.83
2338 2881 9.760660 GACAATACAGAGTGAATGTTATTGTTC 57.239 33.333 6.31 0.00 36.34 3.18
2339 2882 9.507329 ACAATACAGAGTGAATGTTATTGTTCT 57.493 29.630 0.00 0.00 34.69 3.01
2340 2883 9.764870 CAATACAGAGTGAATGTTATTGTTCTG 57.235 33.333 0.00 0.00 37.43 3.02
2341 2884 9.507329 AATACAGAGTGAATGTTATTGTTCTGT 57.493 29.630 8.60 8.60 44.27 3.41
2362 2905 8.456904 TCTGTATTGTTATTGTTCGACACTAC 57.543 34.615 0.00 0.00 32.98 2.73
2363 2906 8.301720 TCTGTATTGTTATTGTTCGACACTACT 58.698 33.333 0.00 0.00 33.32 2.57
2366 2909 7.956420 ATTGTTATTGTTCGACACTACTCAA 57.044 32.000 0.00 0.00 0.00 3.02
2369 2912 6.926826 TGTTATTGTTCGACACTACTCAATGT 59.073 34.615 0.00 0.00 0.00 2.71
2377 2920 6.887368 TCGACACTACTCAATGTTGATTTTG 58.113 36.000 0.00 0.00 34.86 2.44
2405 2948 5.862678 TTCATAGATCACATCCCGTAACA 57.137 39.130 0.00 0.00 0.00 2.41
2408 2951 7.718334 TCATAGATCACATCCCGTAACATAT 57.282 36.000 0.00 0.00 0.00 1.78
2412 2955 6.341316 AGATCACATCCCGTAACATATATGC 58.659 40.000 12.79 0.00 0.00 3.14
2424 2967 9.169468 CCGTAACATATATGCACTTGAAATTTC 57.831 33.333 12.79 11.41 0.00 2.17
2434 2977 4.376311 GCACTTGAAATTTCGCATGGAAAC 60.376 41.667 13.34 1.97 46.81 2.78
2443 2986 4.672542 ATTTCGCATGGAAACAGAACATCG 60.673 41.667 10.37 0.00 46.81 3.84
2446 2990 2.941210 TGGAAACAGAACATCGCCC 58.059 52.632 0.00 0.00 35.01 6.13
2448 2992 1.087501 GGAAACAGAACATCGCCCTC 58.912 55.000 0.00 0.00 0.00 4.30
2456 3000 3.941483 CAGAACATCGCCCTCTTAACATT 59.059 43.478 0.00 0.00 0.00 2.71
2457 3001 4.034510 CAGAACATCGCCCTCTTAACATTC 59.965 45.833 0.00 0.00 0.00 2.67
2458 3002 3.914426 ACATCGCCCTCTTAACATTCT 57.086 42.857 0.00 0.00 0.00 2.40
2515 3059 8.402798 ACACCATTTTGACATGTATTTCACTA 57.597 30.769 0.00 0.00 0.00 2.74
2516 3060 8.855110 ACACCATTTTGACATGTATTTCACTAA 58.145 29.630 0.00 0.00 0.00 2.24
2517 3061 9.859427 CACCATTTTGACATGTATTTCACTAAT 57.141 29.630 0.00 0.00 0.00 1.73
2523 3067 9.689976 TTTGACATGTATTTCACTAATTGTTGG 57.310 29.630 0.00 0.00 0.00 3.77
2524 3068 8.402798 TGACATGTATTTCACTAATTGTTGGT 57.597 30.769 0.00 0.00 0.00 3.67
2525 3069 8.855110 TGACATGTATTTCACTAATTGTTGGTT 58.145 29.630 0.00 0.00 0.00 3.67
2526 3070 9.691362 GACATGTATTTCACTAATTGTTGGTTT 57.309 29.630 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 1.073397 ATAGGGGAAGGGCTGGAGG 60.073 63.158 0.00 0.00 0.00 4.30
63 64 1.476007 CGATAGGGGAAGGGCTGGAG 61.476 65.000 0.00 0.00 0.00 3.86
64 65 1.459539 CGATAGGGGAAGGGCTGGA 60.460 63.158 0.00 0.00 0.00 3.86
65 66 3.151906 CGATAGGGGAAGGGCTGG 58.848 66.667 0.00 0.00 0.00 4.85
108 109 4.821589 GAAGAGCACCTCCCGGCG 62.822 72.222 0.00 0.00 34.54 6.46
109 110 4.821589 CGAAGAGCACCTCCCGGC 62.822 72.222 0.00 0.00 0.00 6.13
110 111 4.148825 CCGAAGAGCACCTCCCGG 62.149 72.222 0.00 0.00 39.44 5.73
111 112 4.821589 GCCGAAGAGCACCTCCCG 62.822 72.222 0.00 0.00 0.00 5.14
112 113 4.821589 CGCCGAAGAGCACCTCCC 62.822 72.222 0.00 0.00 0.00 4.30
113 114 4.821589 CCGCCGAAGAGCACCTCC 62.822 72.222 0.00 0.00 0.00 4.30
160 161 4.856801 ATCCACCCACGCCGCATC 62.857 66.667 0.00 0.00 0.00 3.91
164 165 4.082523 AGTCATCCACCCACGCCG 62.083 66.667 0.00 0.00 0.00 6.46
165 166 2.436646 CAGTCATCCACCCACGCC 60.437 66.667 0.00 0.00 0.00 5.68
166 167 2.436646 CCAGTCATCCACCCACGC 60.437 66.667 0.00 0.00 0.00 5.34
167 168 2.268920 CCCAGTCATCCACCCACG 59.731 66.667 0.00 0.00 0.00 4.94
168 169 2.044946 GCCCAGTCATCCACCCAC 60.045 66.667 0.00 0.00 0.00 4.61
169 170 3.716195 CGCCCAGTCATCCACCCA 61.716 66.667 0.00 0.00 0.00 4.51
170 171 3.399181 TCGCCCAGTCATCCACCC 61.399 66.667 0.00 0.00 0.00 4.61
171 172 2.125106 GTCGCCCAGTCATCCACC 60.125 66.667 0.00 0.00 0.00 4.61
172 173 2.509336 CGTCGCCCAGTCATCCAC 60.509 66.667 0.00 0.00 0.00 4.02
173 174 3.770040 CCGTCGCCCAGTCATCCA 61.770 66.667 0.00 0.00 0.00 3.41
219 220 3.726517 CTGGTTCAAGCCACGCCG 61.727 66.667 0.00 0.00 34.36 6.46
220 221 4.043200 GCTGGTTCAAGCCACGCC 62.043 66.667 0.00 0.00 37.20 5.68
226 227 3.435186 GAGCGGGCTGGTTCAAGC 61.435 66.667 0.00 0.00 42.75 4.01
227 228 3.121030 CGAGCGGGCTGGTTCAAG 61.121 66.667 0.00 0.00 0.00 3.02
228 229 4.697756 CCGAGCGGGCTGGTTCAA 62.698 66.667 0.00 0.00 0.00 2.69
238 239 4.598894 CAGATCTGGGCCGAGCGG 62.599 72.222 15.38 4.20 38.57 5.52
239 240 4.598894 CCAGATCTGGGCCGAGCG 62.599 72.222 31.14 5.44 46.81 5.03
247 248 2.578586 CCCAAAGGGCCCAGATCTGG 62.579 65.000 31.69 31.69 41.54 3.86
248 249 1.076485 CCCAAAGGGCCCAGATCTG 60.076 63.158 27.56 16.24 35.35 2.90
249 250 3.431658 CCCAAAGGGCCCAGATCT 58.568 61.111 27.56 0.00 35.35 2.75
259 260 2.042639 CCAGATGGGGCCCAAAGG 60.043 66.667 32.57 26.26 36.95 3.11
269 270 2.755469 CCGCCCAAACCCAGATGG 60.755 66.667 0.00 0.00 41.37 3.51
270 271 2.755469 CCCGCCCAAACCCAGATG 60.755 66.667 0.00 0.00 0.00 2.90
271 272 4.759205 GCCCGCCCAAACCCAGAT 62.759 66.667 0.00 0.00 0.00 2.90
364 365 2.659897 CTATGCCTGAGCGACCGC 60.660 66.667 6.25 6.25 44.31 5.68
365 366 0.872021 GAACTATGCCTGAGCGACCG 60.872 60.000 0.00 0.00 44.31 4.79
366 367 0.175760 TGAACTATGCCTGAGCGACC 59.824 55.000 0.00 0.00 44.31 4.79
367 368 1.281899 GTGAACTATGCCTGAGCGAC 58.718 55.000 0.00 0.00 44.31 5.19
368 369 0.175760 GGTGAACTATGCCTGAGCGA 59.824 55.000 0.00 0.00 44.31 4.93
369 370 0.108186 TGGTGAACTATGCCTGAGCG 60.108 55.000 0.00 0.00 44.31 5.03
370 371 2.158842 AGATGGTGAACTATGCCTGAGC 60.159 50.000 0.00 0.00 40.48 4.26
371 372 3.834489 AGATGGTGAACTATGCCTGAG 57.166 47.619 0.00 0.00 0.00 3.35
372 373 4.225942 AGAAAGATGGTGAACTATGCCTGA 59.774 41.667 0.00 0.00 0.00 3.86
373 374 4.334759 CAGAAAGATGGTGAACTATGCCTG 59.665 45.833 0.00 0.00 0.00 4.85
374 375 4.521146 CAGAAAGATGGTGAACTATGCCT 58.479 43.478 0.00 0.00 0.00 4.75
375 376 3.629398 CCAGAAAGATGGTGAACTATGCC 59.371 47.826 0.00 0.00 35.47 4.40
376 377 4.889832 CCAGAAAGATGGTGAACTATGC 57.110 45.455 0.00 0.00 35.47 3.14
386 387 0.613260 TGTCGGGACCAGAAAGATGG 59.387 55.000 0.00 0.00 46.47 3.51
387 388 1.406069 CCTGTCGGGACCAGAAAGATG 60.406 57.143 13.04 0.00 37.23 2.90
388 389 0.905357 CCTGTCGGGACCAGAAAGAT 59.095 55.000 13.04 0.00 37.23 2.40
389 390 1.827399 GCCTGTCGGGACCAGAAAGA 61.827 60.000 13.04 0.00 37.23 2.52
390 391 1.376037 GCCTGTCGGGACCAGAAAG 60.376 63.158 0.31 4.88 37.23 2.62
391 392 2.747686 GCCTGTCGGGACCAGAAA 59.252 61.111 0.31 0.00 37.23 2.52
392 393 3.691342 CGCCTGTCGGGACCAGAA 61.691 66.667 0.31 0.00 37.23 3.02
393 394 4.988716 ACGCCTGTCGGGACCAGA 62.989 66.667 0.31 0.00 43.86 3.86
394 395 4.742201 CACGCCTGTCGGGACCAG 62.742 72.222 0.31 0.00 46.58 4.00
400 401 4.680237 TTGGAGCACGCCTGTCGG 62.680 66.667 0.00 0.00 43.86 4.79
401 402 3.414700 GTTGGAGCACGCCTGTCG 61.415 66.667 0.00 0.00 45.38 4.35
402 403 2.029844 GAGTTGGAGCACGCCTGTC 61.030 63.158 0.00 0.00 0.00 3.51
403 404 2.031163 GAGTTGGAGCACGCCTGT 59.969 61.111 0.00 0.00 0.00 4.00
404 405 3.114616 CGAGTTGGAGCACGCCTG 61.115 66.667 0.00 0.00 0.00 4.85
405 406 2.867855 TTCGAGTTGGAGCACGCCT 61.868 57.895 0.00 0.00 0.00 5.52
406 407 2.357034 TTCGAGTTGGAGCACGCC 60.357 61.111 0.00 0.00 0.00 5.68
407 408 2.668280 GGTTCGAGTTGGAGCACGC 61.668 63.158 0.00 0.00 0.00 5.34
408 409 2.027625 GGGTTCGAGTTGGAGCACG 61.028 63.158 0.00 0.00 0.00 5.34
409 410 0.250338 AAGGGTTCGAGTTGGAGCAC 60.250 55.000 0.00 0.00 0.00 4.40
410 411 0.034896 GAAGGGTTCGAGTTGGAGCA 59.965 55.000 0.00 0.00 0.00 4.26
411 412 0.034896 TGAAGGGTTCGAGTTGGAGC 59.965 55.000 0.00 0.00 0.00 4.70
412 413 2.543777 TTGAAGGGTTCGAGTTGGAG 57.456 50.000 0.00 0.00 0.00 3.86
413 414 2.436542 TCTTTGAAGGGTTCGAGTTGGA 59.563 45.455 0.00 0.00 0.00 3.53
414 415 2.846193 TCTTTGAAGGGTTCGAGTTGG 58.154 47.619 0.00 0.00 0.00 3.77
415 416 4.127171 TCTTCTTTGAAGGGTTCGAGTTG 58.873 43.478 7.37 0.00 0.00 3.16
416 417 4.417426 TCTTCTTTGAAGGGTTCGAGTT 57.583 40.909 7.37 0.00 0.00 3.01
417 418 4.284746 AGATCTTCTTTGAAGGGTTCGAGT 59.715 41.667 7.37 0.00 0.00 4.18
418 419 4.629200 CAGATCTTCTTTGAAGGGTTCGAG 59.371 45.833 7.37 0.00 0.00 4.04
419 420 4.563580 CCAGATCTTCTTTGAAGGGTTCGA 60.564 45.833 7.37 0.00 0.00 3.71
420 421 3.686726 CCAGATCTTCTTTGAAGGGTTCG 59.313 47.826 7.37 0.00 0.00 3.95
421 422 4.013050 CCCAGATCTTCTTTGAAGGGTTC 58.987 47.826 7.37 3.62 0.00 3.62
422 423 3.399305 ACCCAGATCTTCTTTGAAGGGTT 59.601 43.478 9.74 0.00 45.61 4.11
423 424 2.989571 ACCCAGATCTTCTTTGAAGGGT 59.010 45.455 9.74 9.74 43.19 4.34
424 425 3.615155 GACCCAGATCTTCTTTGAAGGG 58.385 50.000 8.58 8.58 40.88 3.95
425 426 3.265791 CGACCCAGATCTTCTTTGAAGG 58.734 50.000 7.37 0.00 0.00 3.46
426 427 3.265791 CCGACCCAGATCTTCTTTGAAG 58.734 50.000 0.00 1.23 0.00 3.02
427 428 2.615493 GCCGACCCAGATCTTCTTTGAA 60.615 50.000 0.00 0.00 0.00 2.69
428 429 1.066143 GCCGACCCAGATCTTCTTTGA 60.066 52.381 0.00 0.00 0.00 2.69
429 430 1.373570 GCCGACCCAGATCTTCTTTG 58.626 55.000 0.00 0.00 0.00 2.77
430 431 0.253327 GGCCGACCCAGATCTTCTTT 59.747 55.000 0.00 0.00 0.00 2.52
431 432 0.909610 TGGCCGACCCAGATCTTCTT 60.910 55.000 0.00 0.00 39.18 2.52
432 433 1.306141 TGGCCGACCCAGATCTTCT 60.306 57.895 0.00 0.00 39.18 2.85
433 434 3.309582 TGGCCGACCCAGATCTTC 58.690 61.111 0.00 0.00 39.18 2.87
476 477 2.734673 CGCAAGGAAGCTGACGAGC 61.735 63.158 0.00 0.00 46.64 5.03
477 478 2.734673 GCGCAAGGAAGCTGACGAG 61.735 63.158 0.30 0.00 38.28 4.18
478 479 2.738521 GCGCAAGGAAGCTGACGA 60.739 61.111 0.30 0.00 38.28 4.20
479 480 2.301902 GATGCGCAAGGAAGCTGACG 62.302 60.000 17.11 0.00 45.01 4.35
480 481 1.427020 GATGCGCAAGGAAGCTGAC 59.573 57.895 17.11 0.00 45.01 3.51
481 482 1.746615 GGATGCGCAAGGAAGCTGA 60.747 57.895 17.11 0.00 45.01 4.26
482 483 2.768492 GGGATGCGCAAGGAAGCTG 61.768 63.158 17.11 0.00 45.01 4.24
483 484 2.439156 GGGATGCGCAAGGAAGCT 60.439 61.111 17.11 0.00 45.01 3.74
484 485 2.751436 TGGGATGCGCAAGGAAGC 60.751 61.111 17.11 0.00 45.01 3.86
485 486 2.117156 CCTGGGATGCGCAAGGAAG 61.117 63.158 19.10 12.36 45.01 3.46
486 487 2.045045 CCTGGGATGCGCAAGGAA 60.045 61.111 19.10 3.17 45.01 3.36
487 488 2.424842 AAACCTGGGATGCGCAAGGA 62.425 55.000 28.17 7.17 46.91 3.36
488 489 1.535204 AAAACCTGGGATGCGCAAGG 61.535 55.000 21.55 21.55 38.28 3.61
489 490 1.133025 CTAAAACCTGGGATGCGCAAG 59.867 52.381 17.11 7.09 43.44 4.01
490 491 1.173043 CTAAAACCTGGGATGCGCAA 58.827 50.000 17.11 0.00 0.00 4.85
491 492 0.326595 TCTAAAACCTGGGATGCGCA 59.673 50.000 14.96 14.96 0.00 6.09
492 493 1.132453 GTTCTAAAACCTGGGATGCGC 59.868 52.381 0.00 0.00 0.00 6.09
503 504 1.981533 CGAGTCGACGGGTTCTAAAAC 59.018 52.381 6.73 0.00 34.46 2.43
504 505 1.666888 GCGAGTCGACGGGTTCTAAAA 60.667 52.381 18.61 0.00 0.00 1.52
505 506 0.109597 GCGAGTCGACGGGTTCTAAA 60.110 55.000 18.61 0.00 0.00 1.85
506 507 1.236616 TGCGAGTCGACGGGTTCTAA 61.237 55.000 18.61 0.00 0.00 2.10
507 508 1.672030 TGCGAGTCGACGGGTTCTA 60.672 57.895 18.61 0.00 0.00 2.10
508 509 2.981909 TGCGAGTCGACGGGTTCT 60.982 61.111 18.61 0.00 0.00 3.01
509 510 2.804090 GTGCGAGTCGACGGGTTC 60.804 66.667 18.61 0.81 0.00 3.62
510 511 4.695231 CGTGCGAGTCGACGGGTT 62.695 66.667 18.61 0.00 31.16 4.11
514 515 3.816920 CTTGCGTGCGAGTCGACG 61.817 66.667 23.81 23.81 35.11 5.12
515 516 2.708059 GACTTGCGTGCGAGTCGAC 61.708 63.158 22.63 7.70 44.52 4.20
516 517 2.428569 GACTTGCGTGCGAGTCGA 60.429 61.111 22.63 0.00 44.52 4.20
519 520 1.661821 GTCTGACTTGCGTGCGAGT 60.662 57.895 14.43 14.43 42.90 4.18
520 521 1.340657 GAGTCTGACTTGCGTGCGAG 61.341 60.000 12.27 7.56 0.00 5.03
521 522 1.371758 GAGTCTGACTTGCGTGCGA 60.372 57.895 12.27 0.00 0.00 5.10
522 523 2.375766 GGAGTCTGACTTGCGTGCG 61.376 63.158 12.27 0.00 0.00 5.34
523 524 0.601311 AAGGAGTCTGACTTGCGTGC 60.601 55.000 12.27 0.00 0.00 5.34
524 525 1.143305 CAAGGAGTCTGACTTGCGTG 58.857 55.000 12.27 6.12 37.82 5.34
525 526 0.034059 CCAAGGAGTCTGACTTGCGT 59.966 55.000 12.27 0.00 42.01 5.24
526 527 0.034059 ACCAAGGAGTCTGACTTGCG 59.966 55.000 12.27 3.88 42.01 4.85
527 528 1.609320 GGACCAAGGAGTCTGACTTGC 60.609 57.143 12.27 0.00 42.01 4.01
528 529 1.337260 CGGACCAAGGAGTCTGACTTG 60.337 57.143 12.27 6.39 44.52 3.16
529 530 0.969894 CGGACCAAGGAGTCTGACTT 59.030 55.000 12.27 0.00 44.52 3.01
530 531 0.178958 ACGGACCAAGGAGTCTGACT 60.179 55.000 10.66 10.66 44.52 3.41
531 532 0.038159 CACGGACCAAGGAGTCTGAC 60.038 60.000 7.47 0.00 44.52 3.51
532 533 0.469331 ACACGGACCAAGGAGTCTGA 60.469 55.000 7.47 0.00 44.52 3.27
533 534 0.393077 AACACGGACCAAGGAGTCTG 59.607 55.000 0.00 0.00 46.66 3.51
534 535 1.070289 GAAACACGGACCAAGGAGTCT 59.930 52.381 0.00 0.00 36.95 3.24
535 536 1.202604 TGAAACACGGACCAAGGAGTC 60.203 52.381 0.00 0.00 35.95 3.36
536 537 0.834612 TGAAACACGGACCAAGGAGT 59.165 50.000 0.00 0.00 0.00 3.85
537 538 1.961793 TTGAAACACGGACCAAGGAG 58.038 50.000 0.00 0.00 0.00 3.69
538 539 2.421751 TTTGAAACACGGACCAAGGA 57.578 45.000 0.00 0.00 0.00 3.36
539 540 3.380142 CATTTTGAAACACGGACCAAGG 58.620 45.455 0.00 0.00 0.00 3.61
540 541 3.380142 CCATTTTGAAACACGGACCAAG 58.620 45.455 0.00 0.00 0.00 3.61
541 542 2.101582 CCCATTTTGAAACACGGACCAA 59.898 45.455 0.00 0.00 0.00 3.67
542 543 1.683917 CCCATTTTGAAACACGGACCA 59.316 47.619 0.00 0.00 0.00 4.02
543 544 1.684450 ACCCATTTTGAAACACGGACC 59.316 47.619 0.00 0.00 0.00 4.46
544 545 2.603652 CGACCCATTTTGAAACACGGAC 60.604 50.000 0.00 0.00 0.00 4.79
545 546 1.604755 CGACCCATTTTGAAACACGGA 59.395 47.619 0.00 0.00 0.00 4.69
546 547 1.335506 CCGACCCATTTTGAAACACGG 60.336 52.381 0.00 0.00 0.00 4.94
547 548 1.604755 TCCGACCCATTTTGAAACACG 59.395 47.619 0.00 0.00 0.00 4.49
548 549 3.574614 CATCCGACCCATTTTGAAACAC 58.425 45.455 0.00 0.00 0.00 3.32
549 550 2.560542 CCATCCGACCCATTTTGAAACA 59.439 45.455 0.00 0.00 0.00 2.83
550 551 2.094234 CCCATCCGACCCATTTTGAAAC 60.094 50.000 0.00 0.00 0.00 2.78
551 552 2.175202 CCCATCCGACCCATTTTGAAA 58.825 47.619 0.00 0.00 0.00 2.69
552 553 1.618345 CCCCATCCGACCCATTTTGAA 60.618 52.381 0.00 0.00 0.00 2.69
553 554 0.033601 CCCCATCCGACCCATTTTGA 60.034 55.000 0.00 0.00 0.00 2.69
554 555 0.033601 TCCCCATCCGACCCATTTTG 60.034 55.000 0.00 0.00 0.00 2.44
555 556 0.258774 CTCCCCATCCGACCCATTTT 59.741 55.000 0.00 0.00 0.00 1.82
556 557 1.922821 CTCCCCATCCGACCCATTT 59.077 57.895 0.00 0.00 0.00 2.32
557 558 2.757124 GCTCCCCATCCGACCCATT 61.757 63.158 0.00 0.00 0.00 3.16
558 559 3.171388 GCTCCCCATCCGACCCAT 61.171 66.667 0.00 0.00 0.00 4.00
600 601 3.952628 GAAAGGCGTGTCCCTCGGG 62.953 68.421 0.00 0.00 32.93 5.14
601 602 2.434359 GAAAGGCGTGTCCCTCGG 60.434 66.667 0.00 0.00 32.93 4.63
602 603 2.809601 CGAAAGGCGTGTCCCTCG 60.810 66.667 0.00 0.00 35.30 4.63
614 615 3.484547 GGTACCGCGTGCCGAAAG 61.485 66.667 4.92 0.00 40.02 2.62
659 660 1.185618 TGAGCAGGTTCAGCGTAGGT 61.186 55.000 0.00 0.00 41.48 3.08
660 661 0.737715 GTGAGCAGGTTCAGCGTAGG 60.738 60.000 0.00 0.00 37.01 3.18
661 662 0.244994 AGTGAGCAGGTTCAGCGTAG 59.755 55.000 0.00 0.00 37.01 3.51
678 679 4.567747 GGTGTCAAATATCTTGGTCCCAGT 60.568 45.833 0.00 0.00 0.00 4.00
685 686 4.521146 AGCAGAGGTGTCAAATATCTTGG 58.479 43.478 0.00 0.00 0.00 3.61
697 698 2.717639 ACAAGTCAAAGCAGAGGTGT 57.282 45.000 0.00 0.00 0.00 4.16
706 707 7.189693 TGTTTCTATGCAGTACAAGTCAAAG 57.810 36.000 0.00 0.00 0.00 2.77
834 842 1.536907 TGCCTAACCTTCCCGGACA 60.537 57.895 0.73 0.00 36.31 4.02
879 896 2.273449 CAGTGTGATGCCCTCCCC 59.727 66.667 0.00 0.00 0.00 4.81
914 931 3.072476 GCTCACTGCCTCCCTCAA 58.928 61.111 0.00 0.00 35.15 3.02
931 950 2.223203 GCGAAAAGCTGATCTGTGATGG 60.223 50.000 1.27 0.00 44.04 3.51
952 971 2.084546 GTTGGTCGGGGAATTTCTCAG 58.915 52.381 0.00 0.00 0.00 3.35
1077 1103 4.388499 GTGGCGGCGGAGGAGAAA 62.388 66.667 9.78 0.00 0.00 2.52
1201 1233 0.031178 CACAAACAACAGCAGGGAGC 59.969 55.000 0.00 0.00 46.19 4.70
1259 1291 2.091112 CAGACGACGAAGCTGCAGG 61.091 63.158 17.12 0.31 0.00 4.85
1279 1311 1.515020 GCTGTGAGTCGAGCCAGAT 59.485 57.895 3.10 0.00 0.00 2.90
1297 1329 4.883354 GGGCATTCCAGAGGGGCG 62.883 72.222 0.00 0.00 36.21 6.13
1323 1355 7.805071 CAGGTTCAAGTTCAACATGTCTAAATC 59.195 37.037 0.00 0.00 32.21 2.17
1328 1360 4.780815 TCAGGTTCAAGTTCAACATGTCT 58.219 39.130 4.22 0.00 36.97 3.41
1341 1373 0.110486 GCCCTCAGGTTCAGGTTCAA 59.890 55.000 0.00 0.00 34.57 2.69
1352 1384 1.764723 TGTGTGATATGAGCCCTCAGG 59.235 52.381 4.16 0.00 43.61 3.86
1360 1392 5.422145 TCATGTCCAAGTGTGTGATATGAG 58.578 41.667 0.00 0.00 32.69 2.90
1365 1397 4.276678 CAGTTTCATGTCCAAGTGTGTGAT 59.723 41.667 0.00 0.00 0.00 3.06
1372 1404 4.780815 TCTTGTCAGTTTCATGTCCAAGT 58.219 39.130 0.00 0.00 34.64 3.16
1477 1509 2.738213 CTTTGCGAGGTCCAGGCTGT 62.738 60.000 14.43 0.00 0.00 4.40
1508 1540 2.448453 CTACGGGTCTTCAGGAACTCT 58.552 52.381 0.00 0.00 34.60 3.24
1543 1575 6.138761 CACAAGAAAAATCTCAACTTCTCCG 58.861 40.000 0.00 0.00 0.00 4.63
1568 1600 8.693625 TCTATTGCTATATCTGGATGTGATGAG 58.306 37.037 0.00 0.00 0.00 2.90
1602 1634 7.385778 TGTGTAGGAGCCAATTACAATTAAC 57.614 36.000 0.00 0.00 0.00 2.01
1612 1644 3.939740 ACATGATGTGTAGGAGCCAAT 57.060 42.857 0.00 0.00 39.91 3.16
1617 1649 5.551305 TGGGAATACATGATGTGTAGGAG 57.449 43.478 8.61 0.00 45.94 3.69
1627 1659 6.127479 GGTGCTAACAATTTGGGAATACATGA 60.127 38.462 0.00 0.00 0.00 3.07
1681 1713 6.042093 TCGGGAGATTGAGCTAAAGTATCAAT 59.958 38.462 10.45 10.45 44.26 2.57
1735 1767 7.169308 AGAGTTGGTCGATTTAAACATATAGCG 59.831 37.037 0.00 0.00 0.00 4.26
1787 1819 4.220602 ACCCAAAGACTGGTGCATAATTTC 59.779 41.667 0.00 0.00 44.76 2.17
1794 1826 2.738587 TTTACCCAAAGACTGGTGCA 57.261 45.000 0.00 0.00 44.76 4.57
1905 1937 1.408422 GCTGCGTCAACAATGTTTCC 58.592 50.000 0.00 0.00 0.00 3.13
1910 1942 0.584785 CGATCGCTGCGTCAACAATG 60.585 55.000 22.48 1.12 0.00 2.82
1911 1943 1.695893 CCGATCGCTGCGTCAACAAT 61.696 55.000 22.48 6.65 0.00 2.71
1926 1958 9.931210 GATTAGTTTTCGACATAATTTTCCGAT 57.069 29.630 0.00 0.00 0.00 4.18
1987 2058 0.535102 ACAAAGAGACCCGCCAACTG 60.535 55.000 0.00 0.00 0.00 3.16
1988 2059 1.053424 TACAAAGAGACCCGCCAACT 58.947 50.000 0.00 0.00 0.00 3.16
1990 2061 1.349688 ACATACAAAGAGACCCGCCAA 59.650 47.619 0.00 0.00 0.00 4.52
1991 2062 0.981183 ACATACAAAGAGACCCGCCA 59.019 50.000 0.00 0.00 0.00 5.69
1992 2063 1.653151 GACATACAAAGAGACCCGCC 58.347 55.000 0.00 0.00 0.00 6.13
1993 2064 1.278238 CGACATACAAAGAGACCCGC 58.722 55.000 0.00 0.00 0.00 6.13
1994 2065 2.259618 CACGACATACAAAGAGACCCG 58.740 52.381 0.00 0.00 0.00 5.28
1995 2066 3.251571 GACACGACATACAAAGAGACCC 58.748 50.000 0.00 0.00 0.00 4.46
1996 2067 3.251571 GGACACGACATACAAAGAGACC 58.748 50.000 0.00 0.00 0.00 3.85
1997 2068 3.909430 TGGACACGACATACAAAGAGAC 58.091 45.455 0.00 0.00 0.00 3.36
1998 2069 3.056821 CCTGGACACGACATACAAAGAGA 60.057 47.826 0.00 0.00 0.00 3.10
1999 2070 3.056821 TCCTGGACACGACATACAAAGAG 60.057 47.826 0.00 0.00 0.00 2.85
2000 2071 2.894765 TCCTGGACACGACATACAAAGA 59.105 45.455 0.00 0.00 0.00 2.52
2001 2072 3.313012 TCCTGGACACGACATACAAAG 57.687 47.619 0.00 0.00 0.00 2.77
2002 2073 3.322541 TCTTCCTGGACACGACATACAAA 59.677 43.478 0.00 0.00 0.00 2.83
2003 2074 2.894765 TCTTCCTGGACACGACATACAA 59.105 45.455 0.00 0.00 0.00 2.41
2004 2075 2.492088 CTCTTCCTGGACACGACATACA 59.508 50.000 0.00 0.00 0.00 2.29
2005 2076 2.159226 CCTCTTCCTGGACACGACATAC 60.159 54.545 0.00 0.00 0.00 2.39
2006 2077 2.100197 CCTCTTCCTGGACACGACATA 58.900 52.381 0.00 0.00 0.00 2.29
2007 2078 0.898320 CCTCTTCCTGGACACGACAT 59.102 55.000 0.00 0.00 0.00 3.06
2008 2079 0.178973 TCCTCTTCCTGGACACGACA 60.179 55.000 0.00 0.00 0.00 4.35
2009 2080 0.528470 CTCCTCTTCCTGGACACGAC 59.472 60.000 0.00 0.00 0.00 4.34
2010 2081 1.251527 GCTCCTCTTCCTGGACACGA 61.252 60.000 0.00 0.00 0.00 4.35
2011 2082 1.216710 GCTCCTCTTCCTGGACACG 59.783 63.158 0.00 0.00 0.00 4.49
2012 2083 0.036858 GTGCTCCTCTTCCTGGACAC 60.037 60.000 0.00 0.00 32.78 3.67
2013 2084 0.178921 AGTGCTCCTCTTCCTGGACA 60.179 55.000 0.00 0.00 0.00 4.02
2014 2085 0.980423 AAGTGCTCCTCTTCCTGGAC 59.020 55.000 0.00 0.00 0.00 4.02
2015 2086 0.979665 CAAGTGCTCCTCTTCCTGGA 59.020 55.000 0.00 0.00 0.00 3.86
2016 2087 0.979665 TCAAGTGCTCCTCTTCCTGG 59.020 55.000 0.00 0.00 0.00 4.45
2017 2088 2.235650 TCATCAAGTGCTCCTCTTCCTG 59.764 50.000 0.00 0.00 0.00 3.86
2018 2089 2.544721 TCATCAAGTGCTCCTCTTCCT 58.455 47.619 0.00 0.00 0.00 3.36
2019 2090 3.557228 ATCATCAAGTGCTCCTCTTCC 57.443 47.619 0.00 0.00 0.00 3.46
2020 2091 7.281774 TGAATAAATCATCAAGTGCTCCTCTTC 59.718 37.037 0.00 0.00 31.50 2.87
2021 2092 7.114754 TGAATAAATCATCAAGTGCTCCTCTT 58.885 34.615 0.00 0.00 31.50 2.85
2022 2093 6.656902 TGAATAAATCATCAAGTGCTCCTCT 58.343 36.000 0.00 0.00 31.50 3.69
2023 2094 6.932356 TGAATAAATCATCAAGTGCTCCTC 57.068 37.500 0.00 0.00 31.50 3.71
2046 2117 9.883142 CAATTTCTACTTCTAGTTCCAGAGAAT 57.117 33.333 0.00 0.00 33.67 2.40
2050 2121 8.429641 ACAACAATTTCTACTTCTAGTTCCAGA 58.570 33.333 0.00 0.00 0.00 3.86
2095 2168 4.739793 TGACCCATTCCTCAAAAGATGTT 58.260 39.130 0.00 0.00 0.00 2.71
2099 2172 4.324563 GGATCTGACCCATTCCTCAAAAGA 60.325 45.833 0.00 0.00 0.00 2.52
2115 2188 3.365472 TCTGAGAAATGGTCGGATCTGA 58.635 45.455 0.00 0.00 0.00 3.27
2122 2195 2.497675 TCTCCCTTCTGAGAAATGGTCG 59.502 50.000 9.46 4.25 38.41 4.79
2135 2208 8.519799 TGGTTTTTATGTGATATTCTCCCTTC 57.480 34.615 0.00 0.00 0.00 3.46
2159 2700 7.922505 TCCACGAAGTTTTAATTGAATGTTG 57.077 32.000 0.00 0.00 41.61 3.33
2219 2760 9.872684 AACATCATCTTCTTAACATCCCATATT 57.127 29.630 0.00 0.00 0.00 1.28
2253 2794 6.183360 TGTGTTTCAACTTGGAATTTTGCATG 60.183 34.615 0.00 0.00 0.00 4.06
2258 2799 9.612066 ATGTAATGTGTTTCAACTTGGAATTTT 57.388 25.926 0.00 0.00 0.00 1.82
2285 2826 9.696917 GAATTTGGTTTTCTCATAACTCACATT 57.303 29.630 0.00 0.00 0.00 2.71
2293 2834 9.834628 GTATTGTCGAATTTGGTTTTCTCATAA 57.165 29.630 0.00 0.00 0.00 1.90
2299 2840 7.323656 CACTCTGTATTGTCGAATTTGGTTTTC 59.676 37.037 0.00 0.00 0.00 2.29
2304 2847 6.480524 TTCACTCTGTATTGTCGAATTTGG 57.519 37.500 0.00 0.00 0.00 3.28
2312 2855 9.760660 GAACAATAACATTCACTCTGTATTGTC 57.239 33.333 7.18 0.26 34.05 3.18
2332 2875 8.779303 TGTCGAACAATAACAATACAGAACAAT 58.221 29.630 0.00 0.00 0.00 2.71
2333 2876 8.065407 GTGTCGAACAATAACAATACAGAACAA 58.935 33.333 0.00 0.00 0.00 2.83
2334 2877 7.439955 AGTGTCGAACAATAACAATACAGAACA 59.560 33.333 0.00 0.00 0.00 3.18
2335 2878 7.793902 AGTGTCGAACAATAACAATACAGAAC 58.206 34.615 0.00 0.00 0.00 3.01
2336 2879 7.956420 AGTGTCGAACAATAACAATACAGAA 57.044 32.000 0.00 0.00 0.00 3.02
2337 2880 8.301720 AGTAGTGTCGAACAATAACAATACAGA 58.698 33.333 12.84 0.00 43.30 3.41
2338 2881 8.462143 AGTAGTGTCGAACAATAACAATACAG 57.538 34.615 12.84 0.00 43.30 2.74
2339 2882 8.083462 TGAGTAGTGTCGAACAATAACAATACA 58.917 33.333 12.84 0.00 43.30 2.29
2340 2883 8.456904 TGAGTAGTGTCGAACAATAACAATAC 57.543 34.615 4.66 4.66 41.99 1.89
2341 2884 9.647797 ATTGAGTAGTGTCGAACAATAACAATA 57.352 29.630 16.63 2.70 36.82 1.90
2342 2885 7.956420 TTGAGTAGTGTCGAACAATAACAAT 57.044 32.000 0.00 0.00 29.99 2.71
2343 2886 7.439955 ACATTGAGTAGTGTCGAACAATAACAA 59.560 33.333 0.00 3.41 34.54 2.83
2349 2892 5.353111 TCAACATTGAGTAGTGTCGAACAA 58.647 37.500 0.00 0.00 32.50 2.83
2350 2893 4.939271 TCAACATTGAGTAGTGTCGAACA 58.061 39.130 0.00 0.00 32.50 3.18
2354 2897 6.658831 ACAAAATCAACATTGAGTAGTGTCG 58.341 36.000 0.23 0.00 41.08 4.35
2377 2920 7.730364 ACGGGATGTGATCTATGAAAATAAC 57.270 36.000 0.00 0.00 0.00 1.89
2387 2930 7.123547 TGCATATATGTTACGGGATGTGATCTA 59.876 37.037 14.14 0.00 0.00 1.98
2405 2948 6.864685 CCATGCGAAATTTCAAGTGCATATAT 59.135 34.615 22.62 7.16 40.77 0.86
2408 2951 4.157472 TCCATGCGAAATTTCAAGTGCATA 59.843 37.500 22.62 11.64 40.77 3.14
2412 2955 4.744137 TGTTTCCATGCGAAATTTCAAGTG 59.256 37.500 17.99 11.61 42.38 3.16
2424 2967 1.791555 GCGATGTTCTGTTTCCATGCG 60.792 52.381 0.00 0.00 0.00 4.73
2434 2977 2.972625 TGTTAAGAGGGCGATGTTCTG 58.027 47.619 0.00 0.00 0.00 3.02
2477 3021 9.273016 TGTCAAAATGGTGTTTTGAAGTTTAAA 57.727 25.926 15.14 0.00 46.16 1.52
2479 3023 8.877779 CATGTCAAAATGGTGTTTTGAAGTTTA 58.122 29.630 15.14 3.88 46.16 2.01
2480 3024 7.390162 ACATGTCAAAATGGTGTTTTGAAGTTT 59.610 29.630 15.14 1.87 46.16 2.66
2500 3044 9.691362 AAACCAACAATTAGTGAAATACATGTC 57.309 29.630 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.