Multiple sequence alignment - TraesCS7B01G261000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G261000 chr7B 100.000 5190 0 0 1 5190 481618815 481613626 0.000000e+00 9585
1 TraesCS7B01G261000 chr7B 80.296 1487 255 32 2754 4226 481666804 481665342 0.000000e+00 1088
2 TraesCS7B01G261000 chr7D 95.219 4330 190 9 602 4929 459466578 459462264 0.000000e+00 6833
3 TraesCS7B01G261000 chr7D 92.520 4492 296 21 464 4929 459608160 459603683 0.000000e+00 6397
4 TraesCS7B01G261000 chr7D 91.146 3422 284 15 885 4294 459433481 459430067 0.000000e+00 4623
5 TraesCS7B01G261000 chr7D 81.504 1503 246 18 2754 4243 459472526 459471043 0.000000e+00 1206
6 TraesCS7B01G261000 chr7D 80.445 1483 256 27 2754 4225 459744620 459743161 0.000000e+00 1101
7 TraesCS7B01G261000 chr7D 79.707 1365 264 12 1400 2758 459746043 459744686 0.000000e+00 974
8 TraesCS7B01G261000 chr7D 87.852 782 64 11 3701 4469 459429183 459428420 0.000000e+00 889
9 TraesCS7B01G261000 chr7D 83.981 618 80 12 795 1410 459746849 459746249 4.510000e-160 575
10 TraesCS7B01G261000 chr7D 89.147 258 11 1 4933 5190 459462187 459461947 6.530000e-79 305
11 TraesCS7B01G261000 chr7D 95.385 65 3 0 4933 4997 459603597 459603533 2.560000e-18 104
12 TraesCS7B01G261000 chr7A 91.409 4563 339 20 641 5190 540755406 540759928 0.000000e+00 6205
13 TraesCS7B01G261000 chr7A 91.719 2729 209 14 1572 4294 540283208 540285925 0.000000e+00 3771
14 TraesCS7B01G261000 chr7A 90.343 2568 191 29 447 3000 540771129 540773653 0.000000e+00 3315
15 TraesCS7B01G261000 chr7A 89.161 1061 83 17 464 1503 540282162 540283211 0.000000e+00 1293
16 TraesCS7B01G261000 chr7A 86.526 1091 103 25 3701 4777 540776882 540777942 0.000000e+00 1160
17 TraesCS7B01G261000 chr7A 92.839 796 38 7 4407 5190 540287382 540288170 0.000000e+00 1136
18 TraesCS7B01G261000 chr7A 79.751 1368 264 12 1397 2758 539853640 539855000 0.000000e+00 979
19 TraesCS7B01G261000 chr7A 80.940 1128 188 16 2754 3872 540750226 540751335 0.000000e+00 867
20 TraesCS7B01G261000 chr7A 86.528 527 57 9 3810 4326 540775335 540775857 7.540000e-158 568
21 TraesCS7B01G261000 chr7A 83.633 611 81 13 795 1404 539852839 539853431 1.630000e-154 556
22 TraesCS7B01G261000 chr7A 90.862 383 28 4 3701 4077 540286741 540287122 1.670000e-139 507
23 TraesCS7B01G261000 chr7A 93.284 268 16 2 4112 4378 540287122 540287388 1.350000e-105 394
24 TraesCS7B01G261000 chr7A 81.500 200 20 7 539 726 539852639 539852833 1.160000e-31 148
25 TraesCS7B01G261000 chr6B 87.812 1682 197 5 890 2569 6195931 6197606 0.000000e+00 1964
26 TraesCS7B01G261000 chr6D 89.868 1135 115 0 1436 2570 3028787 3029921 0.000000e+00 1459


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G261000 chr7B 481613626 481618815 5189 True 9585.000000 9585 100.000000 1 5190 1 chr7B.!!$R1 5189
1 TraesCS7B01G261000 chr7B 481665342 481666804 1462 True 1088.000000 1088 80.296000 2754 4226 1 chr7B.!!$R2 1472
2 TraesCS7B01G261000 chr7D 459461947 459466578 4631 True 3569.000000 6833 92.183000 602 5190 2 chr7D.!!$R3 4588
3 TraesCS7B01G261000 chr7D 459603533 459608160 4627 True 3250.500000 6397 93.952500 464 4997 2 chr7D.!!$R4 4533
4 TraesCS7B01G261000 chr7D 459428420 459433481 5061 True 2756.000000 4623 89.499000 885 4469 2 chr7D.!!$R2 3584
5 TraesCS7B01G261000 chr7D 459471043 459472526 1483 True 1206.000000 1206 81.504000 2754 4243 1 chr7D.!!$R1 1489
6 TraesCS7B01G261000 chr7D 459743161 459746849 3688 True 883.333333 1101 81.377667 795 4225 3 chr7D.!!$R5 3430
7 TraesCS7B01G261000 chr7A 540755406 540759928 4522 False 6205.000000 6205 91.409000 641 5190 1 chr7A.!!$F2 4549
8 TraesCS7B01G261000 chr7A 540771129 540777942 6813 False 1681.000000 3315 87.799000 447 4777 3 chr7A.!!$F5 4330
9 TraesCS7B01G261000 chr7A 540282162 540288170 6008 False 1420.200000 3771 91.573000 464 5190 5 chr7A.!!$F4 4726
10 TraesCS7B01G261000 chr7A 540750226 540751335 1109 False 867.000000 867 80.940000 2754 3872 1 chr7A.!!$F1 1118
11 TraesCS7B01G261000 chr7A 539852639 539855000 2361 False 561.000000 979 81.628000 539 2758 3 chr7A.!!$F3 2219
12 TraesCS7B01G261000 chr6B 6195931 6197606 1675 False 1964.000000 1964 87.812000 890 2569 1 chr6B.!!$F1 1679
13 TraesCS7B01G261000 chr6D 3028787 3029921 1134 False 1459.000000 1459 89.868000 1436 2570 1 chr6D.!!$F1 1134

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
388 389 0.179073 GAGATGATGACCCACCCGTG 60.179 60.000 0.0 0.0 0.00 4.94 F
390 391 0.251916 GATGATGACCCACCCGTGAA 59.748 55.000 0.0 0.0 0.00 3.18 F
392 393 0.474614 TGATGACCCACCCGTGAAAA 59.525 50.000 0.0 0.0 0.00 2.29 F
393 394 1.074727 TGATGACCCACCCGTGAAAAT 59.925 47.619 0.0 0.0 0.00 1.82 F
1055 1106 1.089920 AGCTTCATTTGCAGCCTACG 58.910 50.000 0.0 0.0 34.84 3.51 F
2505 3064 1.440145 GCGGAAGGATACCTGCAAGC 61.440 60.000 0.0 0.0 32.13 4.01 F
3117 3751 4.628333 CCACATTTGCAGGAATTTGATGAC 59.372 41.667 0.0 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1204 1255 0.526211 TCAATCACACGACGAGGAGG 59.474 55.000 0.00 0.00 0.00 4.30 R
1538 2023 4.141251 AGAGAGCCTTTGGTAGTTTTCCAA 60.141 41.667 0.00 0.00 42.29 3.53 R
2133 2690 5.062308 GGTACAATTTGCTAGTGAAGAGACG 59.938 44.000 0.00 0.00 0.00 4.18 R
2338 2897 5.250200 TGTTGGTGGTATATTTCCAGTGAC 58.750 41.667 0.00 1.56 35.49 3.67 R
2790 3421 3.944087 ACTTAAGGATGTGAGGAACTGC 58.056 45.455 7.53 0.00 41.55 4.40 R
3411 4310 2.684943 TCTAGGTTCCCATTCGGCATA 58.315 47.619 0.00 0.00 0.00 3.14 R
4641 9526 1.043673 GGCAGTCAGTATCGAGGGGT 61.044 60.000 0.00 0.00 0.00 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.912395 AGCCACCTTGCCGCCAAA 62.912 61.111 0.00 0.00 0.00 3.28
24 25 4.662961 GCCACCTTGCCGCCAAAC 62.663 66.667 0.00 0.00 0.00 2.93
25 26 4.341502 CCACCTTGCCGCCAAACG 62.342 66.667 0.00 0.00 43.15 3.60
34 35 3.981308 CGCCAAACGGAGGTTCAT 58.019 55.556 0.00 0.00 38.44 2.57
35 36 1.794222 CGCCAAACGGAGGTTCATC 59.206 57.895 0.00 0.00 38.44 2.92
36 37 0.953471 CGCCAAACGGAGGTTCATCA 60.953 55.000 0.00 0.00 38.44 3.07
37 38 0.804989 GCCAAACGGAGGTTCATCAG 59.195 55.000 0.00 0.00 34.62 2.90
38 39 1.610624 GCCAAACGGAGGTTCATCAGA 60.611 52.381 0.00 0.00 34.62 3.27
39 40 2.941415 GCCAAACGGAGGTTCATCAGAT 60.941 50.000 0.00 0.00 34.62 2.90
40 41 2.939103 CCAAACGGAGGTTCATCAGATC 59.061 50.000 0.00 0.00 34.62 2.75
41 42 3.599343 CAAACGGAGGTTCATCAGATCA 58.401 45.455 0.00 0.00 34.62 2.92
42 43 3.533606 AACGGAGGTTCATCAGATCAG 57.466 47.619 0.00 0.00 0.00 2.90
43 44 2.739943 ACGGAGGTTCATCAGATCAGA 58.260 47.619 0.00 0.00 0.00 3.27
44 45 2.428890 ACGGAGGTTCATCAGATCAGAC 59.571 50.000 0.00 0.00 0.00 3.51
45 46 2.692557 CGGAGGTTCATCAGATCAGACT 59.307 50.000 0.00 0.00 0.00 3.24
46 47 3.885901 CGGAGGTTCATCAGATCAGACTA 59.114 47.826 0.00 0.00 0.00 2.59
47 48 4.339530 CGGAGGTTCATCAGATCAGACTAA 59.660 45.833 0.00 0.00 0.00 2.24
48 49 5.010516 CGGAGGTTCATCAGATCAGACTAAT 59.989 44.000 0.00 0.00 0.00 1.73
49 50 6.222389 GGAGGTTCATCAGATCAGACTAATG 58.778 44.000 0.00 0.00 0.00 1.90
50 51 6.041409 GGAGGTTCATCAGATCAGACTAATGA 59.959 42.308 0.00 0.00 0.00 2.57
51 52 7.418368 GGAGGTTCATCAGATCAGACTAATGAA 60.418 40.741 0.00 0.00 33.67 2.57
52 53 7.855375 AGGTTCATCAGATCAGACTAATGAAA 58.145 34.615 4.12 0.00 36.62 2.69
53 54 8.492782 AGGTTCATCAGATCAGACTAATGAAAT 58.507 33.333 4.12 0.00 36.62 2.17
54 55 8.557864 GGTTCATCAGATCAGACTAATGAAATG 58.442 37.037 4.12 0.00 36.62 2.32
55 56 7.725818 TCATCAGATCAGACTAATGAAATGC 57.274 36.000 0.00 0.00 31.76 3.56
56 57 7.277396 TCATCAGATCAGACTAATGAAATGCA 58.723 34.615 0.00 0.00 31.76 3.96
57 58 6.915544 TCAGATCAGACTAATGAAATGCAC 57.084 37.500 0.00 0.00 31.76 4.57
58 59 6.408869 TCAGATCAGACTAATGAAATGCACA 58.591 36.000 0.00 0.00 31.76 4.57
59 60 6.537660 TCAGATCAGACTAATGAAATGCACAG 59.462 38.462 0.00 0.00 31.76 3.66
60 61 5.821470 AGATCAGACTAATGAAATGCACAGG 59.179 40.000 0.00 0.00 31.76 4.00
61 62 3.691118 TCAGACTAATGAAATGCACAGGC 59.309 43.478 0.00 0.00 41.68 4.85
62 63 2.679837 AGACTAATGAAATGCACAGGCG 59.320 45.455 0.00 0.00 45.35 5.52
63 64 1.745087 ACTAATGAAATGCACAGGCGG 59.255 47.619 0.00 0.00 45.35 6.13
64 65 1.066002 CTAATGAAATGCACAGGCGGG 59.934 52.381 0.00 0.00 45.35 6.13
65 66 1.606885 AATGAAATGCACAGGCGGGG 61.607 55.000 0.00 0.00 45.35 5.73
66 67 4.133796 GAAATGCACAGGCGGGGC 62.134 66.667 4.44 4.44 45.35 5.80
77 78 3.483869 GCGGGGCCTCTCTGGATT 61.484 66.667 0.00 0.00 38.35 3.01
78 79 3.049080 GCGGGGCCTCTCTGGATTT 62.049 63.158 0.00 0.00 38.35 2.17
79 80 1.147153 CGGGGCCTCTCTGGATTTC 59.853 63.158 0.00 0.00 38.35 2.17
80 81 1.626356 CGGGGCCTCTCTGGATTTCA 61.626 60.000 0.00 0.00 38.35 2.69
81 82 0.625849 GGGGCCTCTCTGGATTTCAA 59.374 55.000 0.84 0.00 38.35 2.69
82 83 1.409381 GGGGCCTCTCTGGATTTCAAG 60.409 57.143 0.84 0.00 38.35 3.02
83 84 1.561542 GGGCCTCTCTGGATTTCAAGA 59.438 52.381 0.84 0.00 38.35 3.02
84 85 2.025887 GGGCCTCTCTGGATTTCAAGAA 60.026 50.000 0.84 0.00 38.35 2.52
85 86 3.277715 GGCCTCTCTGGATTTCAAGAAG 58.722 50.000 0.00 0.00 38.35 2.85
86 87 3.054802 GGCCTCTCTGGATTTCAAGAAGA 60.055 47.826 0.00 0.00 38.35 2.87
87 88 4.190772 GCCTCTCTGGATTTCAAGAAGAG 58.809 47.826 0.00 0.00 38.35 2.85
88 89 4.081198 GCCTCTCTGGATTTCAAGAAGAGA 60.081 45.833 10.54 0.00 40.73 3.10
89 90 5.570439 GCCTCTCTGGATTTCAAGAAGAGAA 60.570 44.000 10.54 0.00 41.99 2.87
90 91 6.471146 CCTCTCTGGATTTCAAGAAGAGAAA 58.529 40.000 10.54 0.00 41.99 2.52
91 92 6.594937 CCTCTCTGGATTTCAAGAAGAGAAAG 59.405 42.308 10.54 0.00 41.99 2.62
92 93 7.072263 TCTCTGGATTTCAAGAAGAGAAAGT 57.928 36.000 0.00 0.00 40.21 2.66
93 94 8.195165 TCTCTGGATTTCAAGAAGAGAAAGTA 57.805 34.615 0.00 0.00 40.21 2.24
94 95 8.091449 TCTCTGGATTTCAAGAAGAGAAAGTAC 58.909 37.037 0.00 0.00 40.21 2.73
95 96 7.735917 TCTGGATTTCAAGAAGAGAAAGTACA 58.264 34.615 0.00 0.00 38.27 2.90
96 97 8.210946 TCTGGATTTCAAGAAGAGAAAGTACAA 58.789 33.333 0.00 0.00 38.27 2.41
97 98 8.383318 TGGATTTCAAGAAGAGAAAGTACAAG 57.617 34.615 0.00 0.00 38.27 3.16
98 99 7.041098 TGGATTTCAAGAAGAGAAAGTACAAGC 60.041 37.037 0.00 0.00 38.27 4.01
99 100 7.041098 GGATTTCAAGAAGAGAAAGTACAAGCA 60.041 37.037 0.00 0.00 38.27 3.91
100 101 7.807977 TTTCAAGAAGAGAAAGTACAAGCAT 57.192 32.000 0.00 0.00 31.79 3.79
101 102 8.902540 TTTCAAGAAGAGAAAGTACAAGCATA 57.097 30.769 0.00 0.00 31.79 3.14
102 103 8.539770 TTCAAGAAGAGAAAGTACAAGCATAG 57.460 34.615 0.00 0.00 0.00 2.23
103 104 7.896811 TCAAGAAGAGAAAGTACAAGCATAGA 58.103 34.615 0.00 0.00 0.00 1.98
104 105 8.367911 TCAAGAAGAGAAAGTACAAGCATAGAA 58.632 33.333 0.00 0.00 0.00 2.10
105 106 8.993121 CAAGAAGAGAAAGTACAAGCATAGAAA 58.007 33.333 0.00 0.00 0.00 2.52
106 107 9.561069 AAGAAGAGAAAGTACAAGCATAGAAAA 57.439 29.630 0.00 0.00 0.00 2.29
107 108 9.561069 AGAAGAGAAAGTACAAGCATAGAAAAA 57.439 29.630 0.00 0.00 0.00 1.94
132 133 9.720769 AATATAAGAATTTGACAGGTATACGGG 57.279 33.333 0.00 0.00 0.00 5.28
133 134 5.431179 AAGAATTTGACAGGTATACGGGT 57.569 39.130 0.00 0.00 0.00 5.28
134 135 6.549433 AAGAATTTGACAGGTATACGGGTA 57.451 37.500 0.00 0.00 0.00 3.69
135 136 6.158023 AGAATTTGACAGGTATACGGGTAG 57.842 41.667 0.00 0.00 0.00 3.18
136 137 5.895534 AGAATTTGACAGGTATACGGGTAGA 59.104 40.000 0.00 0.00 0.00 2.59
137 138 6.381994 AGAATTTGACAGGTATACGGGTAGAA 59.618 38.462 0.00 0.00 0.00 2.10
138 139 4.989279 TTGACAGGTATACGGGTAGAAC 57.011 45.455 0.00 0.00 0.00 3.01
139 140 3.966979 TGACAGGTATACGGGTAGAACA 58.033 45.455 0.00 0.00 0.00 3.18
140 141 3.696051 TGACAGGTATACGGGTAGAACAC 59.304 47.826 0.00 0.00 0.00 3.32
141 142 3.696051 GACAGGTATACGGGTAGAACACA 59.304 47.826 0.00 0.00 0.00 3.72
142 143 3.698040 ACAGGTATACGGGTAGAACACAG 59.302 47.826 0.00 0.00 0.00 3.66
143 144 3.949754 CAGGTATACGGGTAGAACACAGA 59.050 47.826 0.00 0.00 0.00 3.41
144 145 4.583489 CAGGTATACGGGTAGAACACAGAT 59.417 45.833 0.00 0.00 0.00 2.90
145 146 5.068723 CAGGTATACGGGTAGAACACAGATT 59.931 44.000 0.00 0.00 0.00 2.40
146 147 6.263842 CAGGTATACGGGTAGAACACAGATTA 59.736 42.308 0.00 0.00 0.00 1.75
147 148 7.008941 AGGTATACGGGTAGAACACAGATTAT 58.991 38.462 0.00 0.00 0.00 1.28
148 149 8.166061 AGGTATACGGGTAGAACACAGATTATA 58.834 37.037 0.00 0.00 0.00 0.98
149 150 8.964772 GGTATACGGGTAGAACACAGATTATAT 58.035 37.037 0.00 0.00 0.00 0.86
152 153 7.120923 ACGGGTAGAACACAGATTATATTGT 57.879 36.000 0.00 0.00 0.00 2.71
153 154 8.241497 ACGGGTAGAACACAGATTATATTGTA 57.759 34.615 0.00 0.00 0.00 2.41
154 155 8.698210 ACGGGTAGAACACAGATTATATTGTAA 58.302 33.333 0.00 0.00 0.00 2.41
155 156 9.537192 CGGGTAGAACACAGATTATATTGTAAA 57.463 33.333 0.00 0.00 0.00 2.01
174 175 8.988064 TTGTAAAACACATAAAACTTGCAGAA 57.012 26.923 0.00 0.00 36.90 3.02
175 176 8.988064 TGTAAAACACATAAAACTTGCAGAAA 57.012 26.923 0.00 0.00 30.04 2.52
176 177 9.593134 TGTAAAACACATAAAACTTGCAGAAAT 57.407 25.926 0.00 0.00 30.04 2.17
179 180 9.816354 AAAACACATAAAACTTGCAGAAATAGT 57.184 25.926 0.00 0.00 0.00 2.12
180 181 9.816354 AAACACATAAAACTTGCAGAAATAGTT 57.184 25.926 0.00 0.00 33.76 2.24
181 182 8.801715 ACACATAAAACTTGCAGAAATAGTTG 57.198 30.769 1.61 0.00 32.76 3.16
182 183 8.413229 ACACATAAAACTTGCAGAAATAGTTGT 58.587 29.630 1.61 0.00 32.76 3.32
183 184 9.248291 CACATAAAACTTGCAGAAATAGTTGTT 57.752 29.630 1.61 2.54 32.76 2.83
184 185 9.816354 ACATAAAACTTGCAGAAATAGTTGTTT 57.184 25.926 1.61 0.00 32.76 2.83
186 187 7.449934 AAAACTTGCAGAAATAGTTGTTTCG 57.550 32.000 1.61 0.00 41.74 3.46
187 188 6.371809 AACTTGCAGAAATAGTTGTTTCGA 57.628 33.333 0.00 0.00 41.74 3.71
188 189 6.560253 ACTTGCAGAAATAGTTGTTTCGAT 57.440 33.333 0.00 0.00 41.74 3.59
189 190 7.667043 ACTTGCAGAAATAGTTGTTTCGATA 57.333 32.000 0.00 0.00 41.74 2.92
190 191 7.743104 ACTTGCAGAAATAGTTGTTTCGATAG 58.257 34.615 0.00 0.00 41.74 2.08
206 207 5.591643 TCGATAGAACACAAGAAAAGTGC 57.408 39.130 0.00 0.00 46.15 4.40
207 208 5.053811 TCGATAGAACACAAGAAAAGTGCA 58.946 37.500 0.00 0.00 46.15 4.57
208 209 5.700832 TCGATAGAACACAAGAAAAGTGCAT 59.299 36.000 0.00 0.00 46.15 3.96
209 210 6.017933 CGATAGAACACAAGAAAAGTGCATC 58.982 40.000 0.00 0.00 38.44 3.91
210 211 6.347644 CGATAGAACACAAGAAAAGTGCATCA 60.348 38.462 0.00 0.00 38.44 3.07
211 212 5.581126 AGAACACAAGAAAAGTGCATCAA 57.419 34.783 0.00 0.00 40.59 2.57
212 213 6.152932 AGAACACAAGAAAAGTGCATCAAT 57.847 33.333 0.00 0.00 40.59 2.57
213 214 6.211515 AGAACACAAGAAAAGTGCATCAATC 58.788 36.000 0.00 0.00 40.59 2.67
214 215 5.518848 ACACAAGAAAAGTGCATCAATCA 57.481 34.783 0.00 0.00 40.59 2.57
215 216 6.092955 ACACAAGAAAAGTGCATCAATCAT 57.907 33.333 0.00 0.00 40.59 2.45
216 217 7.218228 ACACAAGAAAAGTGCATCAATCATA 57.782 32.000 0.00 0.00 40.59 2.15
217 218 7.833786 ACACAAGAAAAGTGCATCAATCATAT 58.166 30.769 0.00 0.00 40.59 1.78
218 219 7.758076 ACACAAGAAAAGTGCATCAATCATATG 59.242 33.333 0.00 0.00 40.59 1.78
227 228 5.292671 GCATCAATCATATGCGAATGAGT 57.707 39.130 0.00 1.76 40.27 3.41
228 229 6.413018 GCATCAATCATATGCGAATGAGTA 57.587 37.500 0.00 0.00 40.27 2.59
229 230 6.246449 GCATCAATCATATGCGAATGAGTAC 58.754 40.000 0.00 0.00 40.27 2.73
230 231 6.128472 GCATCAATCATATGCGAATGAGTACA 60.128 38.462 0.00 0.00 40.27 2.90
231 232 7.571798 GCATCAATCATATGCGAATGAGTACAA 60.572 37.037 0.00 0.00 40.27 2.41
232 233 7.784633 TCAATCATATGCGAATGAGTACAAA 57.215 32.000 0.00 0.00 39.18 2.83
233 234 8.207521 TCAATCATATGCGAATGAGTACAAAA 57.792 30.769 0.00 0.00 39.18 2.44
234 235 8.672815 TCAATCATATGCGAATGAGTACAAAAA 58.327 29.630 0.00 0.00 39.18 1.94
255 256 6.889301 AAAAGAGATTGCAGAAGATGTTGA 57.111 33.333 0.00 0.00 0.00 3.18
256 257 6.889301 AAAGAGATTGCAGAAGATGTTGAA 57.111 33.333 0.00 0.00 0.00 2.69
257 258 6.889301 AAGAGATTGCAGAAGATGTTGAAA 57.111 33.333 0.00 0.00 0.00 2.69
258 259 7.463961 AAGAGATTGCAGAAGATGTTGAAAT 57.536 32.000 0.00 0.00 0.00 2.17
259 260 8.571461 AAGAGATTGCAGAAGATGTTGAAATA 57.429 30.769 0.00 0.00 0.00 1.40
260 261 8.749026 AGAGATTGCAGAAGATGTTGAAATAT 57.251 30.769 0.00 0.00 0.00 1.28
261 262 9.186837 AGAGATTGCAGAAGATGTTGAAATATT 57.813 29.630 0.00 0.00 0.00 1.28
288 289 9.783081 ACTAAAAAGATTAAAAACGACCCTAGA 57.217 29.630 0.00 0.00 0.00 2.43
290 291 8.454570 AAAAAGATTAAAAACGACCCTAGACA 57.545 30.769 0.00 0.00 0.00 3.41
291 292 7.668525 AAAGATTAAAAACGACCCTAGACAG 57.331 36.000 0.00 0.00 0.00 3.51
292 293 6.356186 AGATTAAAAACGACCCTAGACAGT 57.644 37.500 0.00 0.00 0.00 3.55
293 294 6.396450 AGATTAAAAACGACCCTAGACAGTC 58.604 40.000 0.00 0.00 0.00 3.51
294 295 3.397849 AAAAACGACCCTAGACAGTCC 57.602 47.619 0.00 0.00 0.00 3.85
295 296 2.305858 AAACGACCCTAGACAGTCCT 57.694 50.000 0.00 0.00 0.00 3.85
296 297 1.546961 AACGACCCTAGACAGTCCTG 58.453 55.000 0.00 0.00 0.00 3.86
297 298 0.697079 ACGACCCTAGACAGTCCTGA 59.303 55.000 0.40 0.00 0.00 3.86
298 299 1.285373 ACGACCCTAGACAGTCCTGAT 59.715 52.381 0.40 0.00 0.00 2.90
299 300 2.508716 ACGACCCTAGACAGTCCTGATA 59.491 50.000 0.40 0.00 0.00 2.15
300 301 3.053842 ACGACCCTAGACAGTCCTGATAA 60.054 47.826 0.40 0.00 0.00 1.75
301 302 3.566322 CGACCCTAGACAGTCCTGATAAG 59.434 52.174 0.40 0.00 0.00 1.73
302 303 4.538738 GACCCTAGACAGTCCTGATAAGT 58.461 47.826 0.40 0.00 0.00 2.24
303 304 4.282496 ACCCTAGACAGTCCTGATAAGTG 58.718 47.826 0.40 0.00 0.00 3.16
304 305 3.068873 CCCTAGACAGTCCTGATAAGTGC 59.931 52.174 0.40 0.00 0.00 4.40
305 306 3.957497 CCTAGACAGTCCTGATAAGTGCT 59.043 47.826 0.40 0.00 0.00 4.40
306 307 4.037446 CCTAGACAGTCCTGATAAGTGCTC 59.963 50.000 0.40 0.00 0.00 4.26
307 308 3.707316 AGACAGTCCTGATAAGTGCTCT 58.293 45.455 0.40 0.00 0.00 4.09
308 309 4.093011 AGACAGTCCTGATAAGTGCTCTT 58.907 43.478 6.25 6.25 37.65 2.85
309 310 4.081752 AGACAGTCCTGATAAGTGCTCTTG 60.082 45.833 11.22 0.00 35.36 3.02
310 311 3.580458 ACAGTCCTGATAAGTGCTCTTGT 59.420 43.478 11.22 4.30 35.36 3.16
311 312 3.931468 CAGTCCTGATAAGTGCTCTTGTG 59.069 47.826 11.22 0.00 35.36 3.33
312 313 3.580458 AGTCCTGATAAGTGCTCTTGTGT 59.420 43.478 11.22 0.00 35.36 3.72
313 314 4.772624 AGTCCTGATAAGTGCTCTTGTGTA 59.227 41.667 11.22 0.00 35.36 2.90
314 315 5.423610 AGTCCTGATAAGTGCTCTTGTGTAT 59.576 40.000 11.22 0.00 35.36 2.29
315 316 6.070538 AGTCCTGATAAGTGCTCTTGTGTATT 60.071 38.462 11.22 0.00 35.36 1.89
316 317 6.036517 GTCCTGATAAGTGCTCTTGTGTATTG 59.963 42.308 11.22 0.00 35.36 1.90
317 318 6.070824 TCCTGATAAGTGCTCTTGTGTATTGA 60.071 38.462 11.22 0.00 35.36 2.57
318 319 6.595326 CCTGATAAGTGCTCTTGTGTATTGAA 59.405 38.462 11.22 0.00 35.36 2.69
319 320 7.364522 TGATAAGTGCTCTTGTGTATTGAAC 57.635 36.000 11.22 0.00 35.36 3.18
320 321 6.371548 TGATAAGTGCTCTTGTGTATTGAACC 59.628 38.462 11.22 0.00 35.36 3.62
321 322 4.357918 AGTGCTCTTGTGTATTGAACCT 57.642 40.909 0.00 0.00 0.00 3.50
322 323 4.718961 AGTGCTCTTGTGTATTGAACCTT 58.281 39.130 0.00 0.00 0.00 3.50
323 324 5.133221 AGTGCTCTTGTGTATTGAACCTTT 58.867 37.500 0.00 0.00 0.00 3.11
324 325 5.009010 AGTGCTCTTGTGTATTGAACCTTTG 59.991 40.000 0.00 0.00 0.00 2.77
325 326 5.008613 GTGCTCTTGTGTATTGAACCTTTGA 59.991 40.000 0.00 0.00 0.00 2.69
326 327 5.592282 TGCTCTTGTGTATTGAACCTTTGAA 59.408 36.000 0.00 0.00 0.00 2.69
327 328 6.096141 TGCTCTTGTGTATTGAACCTTTGAAA 59.904 34.615 0.00 0.00 0.00 2.69
328 329 6.978080 GCTCTTGTGTATTGAACCTTTGAAAA 59.022 34.615 0.00 0.00 0.00 2.29
329 330 7.491048 GCTCTTGTGTATTGAACCTTTGAAAAA 59.509 33.333 0.00 0.00 0.00 1.94
363 364 6.690194 AAACATCATGGAAGTAGAGAATGC 57.310 37.500 0.00 0.00 0.00 3.56
364 365 4.712476 ACATCATGGAAGTAGAGAATGCC 58.288 43.478 0.00 0.00 0.00 4.40
365 366 4.164796 ACATCATGGAAGTAGAGAATGCCA 59.835 41.667 0.00 0.00 0.00 4.92
366 367 4.842531 TCATGGAAGTAGAGAATGCCAA 57.157 40.909 0.00 0.00 0.00 4.52
367 368 4.774124 TCATGGAAGTAGAGAATGCCAAG 58.226 43.478 0.00 0.00 0.00 3.61
368 369 4.471025 TCATGGAAGTAGAGAATGCCAAGA 59.529 41.667 0.00 0.00 0.00 3.02
369 370 4.478206 TGGAAGTAGAGAATGCCAAGAG 57.522 45.455 0.00 0.00 0.00 2.85
370 371 4.096681 TGGAAGTAGAGAATGCCAAGAGA 58.903 43.478 0.00 0.00 0.00 3.10
371 372 4.161189 TGGAAGTAGAGAATGCCAAGAGAG 59.839 45.833 0.00 0.00 0.00 3.20
372 373 4.404073 GGAAGTAGAGAATGCCAAGAGAGA 59.596 45.833 0.00 0.00 0.00 3.10
373 374 5.070313 GGAAGTAGAGAATGCCAAGAGAGAT 59.930 44.000 0.00 0.00 0.00 2.75
374 375 5.534207 AGTAGAGAATGCCAAGAGAGATG 57.466 43.478 0.00 0.00 0.00 2.90
375 376 5.207354 AGTAGAGAATGCCAAGAGAGATGA 58.793 41.667 0.00 0.00 0.00 2.92
376 377 5.840149 AGTAGAGAATGCCAAGAGAGATGAT 59.160 40.000 0.00 0.00 0.00 2.45
377 378 4.963373 AGAGAATGCCAAGAGAGATGATG 58.037 43.478 0.00 0.00 0.00 3.07
378 379 4.654724 AGAGAATGCCAAGAGAGATGATGA 59.345 41.667 0.00 0.00 0.00 2.92
379 380 4.706035 AGAATGCCAAGAGAGATGATGAC 58.294 43.478 0.00 0.00 0.00 3.06
380 381 2.996249 TGCCAAGAGAGATGATGACC 57.004 50.000 0.00 0.00 0.00 4.02
381 382 1.487976 TGCCAAGAGAGATGATGACCC 59.512 52.381 0.00 0.00 0.00 4.46
382 383 1.487976 GCCAAGAGAGATGATGACCCA 59.512 52.381 0.00 0.00 0.00 4.51
383 384 2.744494 GCCAAGAGAGATGATGACCCAC 60.744 54.545 0.00 0.00 0.00 4.61
384 385 2.158842 CCAAGAGAGATGATGACCCACC 60.159 54.545 0.00 0.00 0.00 4.61
385 386 1.799933 AGAGAGATGATGACCCACCC 58.200 55.000 0.00 0.00 0.00 4.61
386 387 0.390860 GAGAGATGATGACCCACCCG 59.609 60.000 0.00 0.00 0.00 5.28
387 388 0.325671 AGAGATGATGACCCACCCGT 60.326 55.000 0.00 0.00 0.00 5.28
388 389 0.179073 GAGATGATGACCCACCCGTG 60.179 60.000 0.00 0.00 0.00 4.94
389 390 0.617535 AGATGATGACCCACCCGTGA 60.618 55.000 0.00 0.00 0.00 4.35
390 391 0.251916 GATGATGACCCACCCGTGAA 59.748 55.000 0.00 0.00 0.00 3.18
391 392 0.695924 ATGATGACCCACCCGTGAAA 59.304 50.000 0.00 0.00 0.00 2.69
392 393 0.474614 TGATGACCCACCCGTGAAAA 59.525 50.000 0.00 0.00 0.00 2.29
393 394 1.074727 TGATGACCCACCCGTGAAAAT 59.925 47.619 0.00 0.00 0.00 1.82
394 395 2.167662 GATGACCCACCCGTGAAAATT 58.832 47.619 0.00 0.00 0.00 1.82
395 396 2.074729 TGACCCACCCGTGAAAATTT 57.925 45.000 0.00 0.00 0.00 1.82
396 397 3.225177 TGACCCACCCGTGAAAATTTA 57.775 42.857 0.00 0.00 0.00 1.40
397 398 3.768878 TGACCCACCCGTGAAAATTTAT 58.231 40.909 0.00 0.00 0.00 1.40
398 399 3.759618 TGACCCACCCGTGAAAATTTATC 59.240 43.478 0.00 0.00 0.00 1.75
399 400 3.759618 GACCCACCCGTGAAAATTTATCA 59.240 43.478 0.00 0.00 0.00 2.15
400 401 4.153411 ACCCACCCGTGAAAATTTATCAA 58.847 39.130 0.00 0.00 0.00 2.57
401 402 4.589374 ACCCACCCGTGAAAATTTATCAAA 59.411 37.500 0.00 0.00 0.00 2.69
402 403 5.070580 ACCCACCCGTGAAAATTTATCAAAA 59.929 36.000 0.00 0.00 0.00 2.44
403 404 5.992217 CCCACCCGTGAAAATTTATCAAAAA 59.008 36.000 0.00 0.00 0.00 1.94
404 405 6.652900 CCCACCCGTGAAAATTTATCAAAAAT 59.347 34.615 0.00 0.00 0.00 1.82
405 406 7.819900 CCCACCCGTGAAAATTTATCAAAAATA 59.180 33.333 0.00 0.00 0.00 1.40
406 407 9.209175 CCACCCGTGAAAATTTATCAAAAATAA 57.791 29.630 0.00 0.00 0.00 1.40
433 434 7.862512 TGACTAATCATGTCATGTGCATAAA 57.137 32.000 12.54 0.00 39.23 1.40
434 435 8.454570 TGACTAATCATGTCATGTGCATAAAT 57.545 30.769 12.54 0.00 39.23 1.40
435 436 8.562052 TGACTAATCATGTCATGTGCATAAATC 58.438 33.333 12.54 3.31 39.23 2.17
436 437 8.454570 ACTAATCATGTCATGTGCATAAATCA 57.545 30.769 12.54 0.00 0.00 2.57
437 438 8.347771 ACTAATCATGTCATGTGCATAAATCAC 58.652 33.333 12.54 0.00 35.14 3.06
438 439 6.702716 ATCATGTCATGTGCATAAATCACA 57.297 33.333 12.54 0.00 46.86 3.58
439 440 6.126568 TCATGTCATGTGCATAAATCACAG 57.873 37.500 12.54 0.00 46.14 3.66
440 441 5.881443 TCATGTCATGTGCATAAATCACAGA 59.119 36.000 12.54 0.00 46.14 3.41
441 442 6.374894 TCATGTCATGTGCATAAATCACAGAA 59.625 34.615 12.54 0.00 46.14 3.02
442 443 6.185852 TGTCATGTGCATAAATCACAGAAG 57.814 37.500 0.00 0.00 46.14 2.85
443 444 5.939296 TGTCATGTGCATAAATCACAGAAGA 59.061 36.000 0.00 0.00 46.14 2.87
444 445 6.430616 TGTCATGTGCATAAATCACAGAAGAA 59.569 34.615 0.00 0.00 46.14 2.52
445 446 6.744537 GTCATGTGCATAAATCACAGAAGAAC 59.255 38.462 0.00 0.00 46.14 3.01
449 450 6.486320 TGTGCATAAATCACAGAAGAACTTCA 59.514 34.615 15.43 0.00 39.29 3.02
498 499 6.101734 TGTCAGAAATTCCTAGCATTCCCTAT 59.898 38.462 0.00 0.00 0.00 2.57
499 500 7.001073 GTCAGAAATTCCTAGCATTCCCTATT 58.999 38.462 0.00 0.00 0.00 1.73
500 501 7.174080 GTCAGAAATTCCTAGCATTCCCTATTC 59.826 40.741 0.00 0.00 0.00 1.75
502 503 5.930209 AATTCCTAGCATTCCCTATTCCA 57.070 39.130 0.00 0.00 0.00 3.53
503 504 4.706842 TTCCTAGCATTCCCTATTCCAC 57.293 45.455 0.00 0.00 0.00 4.02
508 509 6.043243 TCCTAGCATTCCCTATTCCACTTTAG 59.957 42.308 0.00 0.00 0.00 1.85
515 516 7.790782 TTCCCTATTCCACTTTAGCATTTTT 57.209 32.000 0.00 0.00 0.00 1.94
517 518 6.951198 TCCCTATTCCACTTTAGCATTTTTCA 59.049 34.615 0.00 0.00 0.00 2.69
557 558 7.381408 CGAATTGCATGCTCATTATTCTTCAAT 59.619 33.333 20.33 2.20 0.00 2.57
752 795 4.023963 GGACTTGAACAACTACTTCCAAGC 60.024 45.833 0.00 0.00 0.00 4.01
753 796 4.523083 ACTTGAACAACTACTTCCAAGCA 58.477 39.130 0.00 0.00 0.00 3.91
754 797 4.335594 ACTTGAACAACTACTTCCAAGCAC 59.664 41.667 0.00 0.00 0.00 4.40
755 798 3.879998 TGAACAACTACTTCCAAGCACA 58.120 40.909 0.00 0.00 0.00 4.57
792 835 5.343058 CAGCAAATAGTTTGAATGAACACCG 59.657 40.000 6.61 0.00 43.26 4.94
808 853 3.873910 ACACCGTATCTGATCCAAAAGG 58.126 45.455 0.00 0.00 0.00 3.11
876 923 4.319190 GCCGCGAATATGTGTGCTATTTTA 60.319 41.667 8.23 0.00 0.00 1.52
984 1035 4.400884 TGTAGCCTGTGAACAACAACAATT 59.599 37.500 0.00 0.00 38.67 2.32
994 1045 5.362143 TGAACAACAACAATTCCATCTTCCA 59.638 36.000 0.00 0.00 0.00 3.53
1000 1051 4.371624 ACAATTCCATCTTCCAGTGTCA 57.628 40.909 0.00 0.00 0.00 3.58
1007 1058 4.074259 CCATCTTCCAGTGTCATGTTTCA 58.926 43.478 0.00 0.00 0.00 2.69
1010 1061 3.565482 TCTTCCAGTGTCATGTTTCAAGC 59.435 43.478 0.00 0.00 0.00 4.01
1019 1070 5.005682 GTGTCATGTTTCAAGCCTTTGTTTC 59.994 40.000 0.00 0.00 35.73 2.78
1042 1093 4.870426 CGTTTCTATGCCTCTTTAGCTTCA 59.130 41.667 0.00 0.00 0.00 3.02
1055 1106 1.089920 AGCTTCATTTGCAGCCTACG 58.910 50.000 0.00 0.00 34.84 3.51
1538 2023 6.439636 TTGGCTCATGAGTAATAGGCTTAT 57.560 37.500 23.38 0.00 35.68 1.73
1593 2150 6.131972 TCATCTCTTCTTGACATTTCCCTT 57.868 37.500 0.00 0.00 0.00 3.95
1737 2294 1.950216 TCCCTCATCGATCTTCGTCTG 59.050 52.381 0.00 0.00 41.35 3.51
1787 2344 4.965532 ACCAGACAGCTTAGGTCATATCTT 59.034 41.667 5.57 0.00 37.74 2.40
1893 2450 2.103432 TCTTGGCGTAGGAAACAACTCA 59.897 45.455 0.00 0.00 0.00 3.41
1950 2507 4.403432 ACACTCCCAAATATTCAGGCATTG 59.597 41.667 2.16 0.00 0.00 2.82
1953 2510 4.360889 TCCCAAATATTCAGGCATTGGTT 58.639 39.130 0.00 0.00 39.07 3.67
2033 2590 5.163540 ACCTTCGTCAGCTTTACCTGTATAG 60.164 44.000 0.00 0.00 34.47 1.31
2039 2596 7.031372 CGTCAGCTTTACCTGTATAGTAACAA 58.969 38.462 0.00 0.00 34.47 2.83
2148 2705 3.119101 GGGAATTCGTCTCTTCACTAGCA 60.119 47.826 0.00 0.00 0.00 3.49
2149 2706 4.495422 GGAATTCGTCTCTTCACTAGCAA 58.505 43.478 0.00 0.00 0.00 3.91
2338 2897 7.475015 CAGGTTGTACATGGATTACAATCTTG 58.525 38.462 14.60 9.01 44.85 3.02
2463 3022 9.174166 GGTAATTTGGTTCAGCTAAAATCTCTA 57.826 33.333 0.00 0.00 31.37 2.43
2505 3064 1.440145 GCGGAAGGATACCTGCAAGC 61.440 60.000 0.00 0.00 32.13 4.01
2644 3203 5.548056 CACAATTACCTATCTGGGGGAGTAT 59.452 44.000 0.00 0.00 41.11 2.12
2645 3204 6.044404 CACAATTACCTATCTGGGGGAGTATT 59.956 42.308 0.00 0.00 41.11 1.89
3117 3751 4.628333 CCACATTTGCAGGAATTTGATGAC 59.372 41.667 0.00 0.00 0.00 3.06
3411 4310 3.785887 TCAAGGCCCTAGTGTTCCAATAT 59.214 43.478 0.00 0.00 0.00 1.28
3790 7179 8.121086 GGTTCAGTTTGTTCTTTACAGAGTTAC 58.879 37.037 0.00 0.00 38.19 2.50
3864 8738 5.608449 TGGCATGAGTGAAGAGATATCAAG 58.392 41.667 5.32 0.00 0.00 3.02
4040 8914 1.308047 ACAAGATGACAGCAACGCAA 58.692 45.000 0.00 0.00 0.00 4.85
4144 9018 0.181587 TGGGACAAGTTTCTGCCGAA 59.818 50.000 0.00 0.00 31.92 4.30
4177 9051 0.330604 AGCATCTGGCCTCACACATT 59.669 50.000 3.32 0.00 46.50 2.71
4203 9077 4.260170 GTCAGATGAAGCAAAGGATCTGT 58.740 43.478 0.00 0.00 41.67 3.41
4400 9283 6.595682 AGTATTATACAAGCACAGCCTGAAT 58.404 36.000 0.00 0.00 0.00 2.57
4503 9387 3.451141 TTTGAACATGGCTTGAACACC 57.549 42.857 7.45 0.00 0.00 4.16
4507 9391 3.196469 TGAACATGGCTTGAACACCAAAA 59.804 39.130 7.45 0.00 39.96 2.44
4521 9405 4.023291 ACACCAAAATCACCTGAACAAGT 58.977 39.130 0.00 0.00 0.00 3.16
4617 9502 0.032952 TCACAAGCGTGTACCTGGTC 59.967 55.000 0.63 0.00 44.02 4.02
4641 9526 0.250989 CGGAAACCTAGTTTGCCCCA 60.251 55.000 6.20 0.00 39.98 4.96
4699 9584 2.083774 CCCTCTGATTGTAGCGCAAAA 58.916 47.619 11.47 0.06 40.91 2.44
4876 9768 5.782893 TTAAGGTTTCATTTCCCACACAG 57.217 39.130 0.00 0.00 0.00 3.66
5072 10051 4.577283 TCAAAAGTCAAAACCCCTACGAAG 59.423 41.667 0.00 0.00 0.00 3.79
5126 10105 2.643551 GCTGCAGGCAAAGGTATAAGA 58.356 47.619 17.12 0.00 41.35 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.912395 TTTGGCGGCAAGGTGGCT 62.912 61.111 24.20 0.00 41.25 4.75
7 8 4.662961 GTTTGGCGGCAAGGTGGC 62.663 66.667 24.20 9.95 39.85 5.01
8 9 4.341502 CGTTTGGCGGCAAGGTGG 62.342 66.667 24.20 11.13 36.85 4.61
17 18 0.953471 TGATGAACCTCCGTTTGGCG 60.953 55.000 0.00 0.00 40.95 5.69
18 19 0.804989 CTGATGAACCTCCGTTTGGC 59.195 55.000 0.00 0.00 34.14 4.52
19 20 2.472695 TCTGATGAACCTCCGTTTGG 57.527 50.000 0.00 0.00 30.30 3.28
20 21 3.599343 TGATCTGATGAACCTCCGTTTG 58.401 45.455 0.00 0.00 30.30 2.93
21 22 3.515502 TCTGATCTGATGAACCTCCGTTT 59.484 43.478 0.00 0.00 30.30 3.60
22 23 3.099905 TCTGATCTGATGAACCTCCGTT 58.900 45.455 0.00 0.00 33.88 4.44
23 24 2.428890 GTCTGATCTGATGAACCTCCGT 59.571 50.000 5.52 0.00 0.00 4.69
24 25 2.692557 AGTCTGATCTGATGAACCTCCG 59.307 50.000 5.52 0.00 0.00 4.63
25 26 5.860941 TTAGTCTGATCTGATGAACCTCC 57.139 43.478 5.52 0.00 0.00 4.30
26 27 7.048629 TCATTAGTCTGATCTGATGAACCTC 57.951 40.000 5.52 0.00 37.45 3.85
27 28 7.429374 TTCATTAGTCTGATCTGATGAACCT 57.571 36.000 16.09 0.84 41.81 3.50
28 29 8.557864 CATTTCATTAGTCTGATCTGATGAACC 58.442 37.037 18.03 0.00 44.27 3.62
29 30 8.068977 GCATTTCATTAGTCTGATCTGATGAAC 58.931 37.037 18.03 9.86 44.27 3.18
30 31 7.771826 TGCATTTCATTAGTCTGATCTGATGAA 59.228 33.333 16.09 16.09 43.53 2.57
31 32 7.226128 GTGCATTTCATTAGTCTGATCTGATGA 59.774 37.037 5.52 2.90 38.21 2.92
32 33 7.012044 TGTGCATTTCATTAGTCTGATCTGATG 59.988 37.037 5.52 0.52 34.25 3.07
33 34 7.052248 TGTGCATTTCATTAGTCTGATCTGAT 58.948 34.615 5.52 0.00 0.00 2.90
34 35 6.408869 TGTGCATTTCATTAGTCTGATCTGA 58.591 36.000 0.00 0.00 0.00 3.27
35 36 6.238402 CCTGTGCATTTCATTAGTCTGATCTG 60.238 42.308 0.00 0.00 0.00 2.90
36 37 5.821470 CCTGTGCATTTCATTAGTCTGATCT 59.179 40.000 0.00 0.00 0.00 2.75
37 38 5.505324 GCCTGTGCATTTCATTAGTCTGATC 60.505 44.000 0.00 0.00 37.47 2.92
38 39 4.337555 GCCTGTGCATTTCATTAGTCTGAT 59.662 41.667 0.00 0.00 37.47 2.90
39 40 3.691118 GCCTGTGCATTTCATTAGTCTGA 59.309 43.478 0.00 0.00 37.47 3.27
40 41 3.486375 CGCCTGTGCATTTCATTAGTCTG 60.486 47.826 0.00 0.00 37.32 3.51
41 42 2.679837 CGCCTGTGCATTTCATTAGTCT 59.320 45.455 0.00 0.00 37.32 3.24
42 43 2.223340 CCGCCTGTGCATTTCATTAGTC 60.223 50.000 0.00 0.00 37.32 2.59
43 44 1.745087 CCGCCTGTGCATTTCATTAGT 59.255 47.619 0.00 0.00 37.32 2.24
44 45 1.066002 CCCGCCTGTGCATTTCATTAG 59.934 52.381 0.00 0.00 37.32 1.73
45 46 1.102154 CCCGCCTGTGCATTTCATTA 58.898 50.000 0.00 0.00 37.32 1.90
46 47 1.606885 CCCCGCCTGTGCATTTCATT 61.607 55.000 0.00 0.00 37.32 2.57
47 48 2.053865 CCCCGCCTGTGCATTTCAT 61.054 57.895 0.00 0.00 37.32 2.57
48 49 2.676121 CCCCGCCTGTGCATTTCA 60.676 61.111 0.00 0.00 37.32 2.69
49 50 4.133796 GCCCCGCCTGTGCATTTC 62.134 66.667 0.00 0.00 37.32 2.17
60 61 2.949705 GAAATCCAGAGAGGCCCCGC 62.950 65.000 0.00 0.00 37.29 6.13
61 62 1.147153 GAAATCCAGAGAGGCCCCG 59.853 63.158 0.00 0.00 37.29 5.73
62 63 0.625849 TTGAAATCCAGAGAGGCCCC 59.374 55.000 0.00 0.00 37.29 5.80
63 64 1.561542 TCTTGAAATCCAGAGAGGCCC 59.438 52.381 0.00 0.00 37.29 5.80
64 65 3.054802 TCTTCTTGAAATCCAGAGAGGCC 60.055 47.826 0.00 0.00 37.29 5.19
65 66 4.081198 TCTCTTCTTGAAATCCAGAGAGGC 60.081 45.833 0.00 0.00 36.02 4.70
66 67 5.674052 TCTCTTCTTGAAATCCAGAGAGG 57.326 43.478 0.00 0.00 36.02 3.69
67 68 7.160726 ACTTTCTCTTCTTGAAATCCAGAGAG 58.839 38.462 0.00 0.00 40.77 3.20
68 69 7.072263 ACTTTCTCTTCTTGAAATCCAGAGA 57.928 36.000 0.00 0.00 38.57 3.10
69 70 7.875041 TGTACTTTCTCTTCTTGAAATCCAGAG 59.125 37.037 0.00 0.00 33.65 3.35
70 71 7.735917 TGTACTTTCTCTTCTTGAAATCCAGA 58.264 34.615 0.00 0.00 33.65 3.86
71 72 7.969536 TGTACTTTCTCTTCTTGAAATCCAG 57.030 36.000 0.00 0.00 33.65 3.86
72 73 7.041098 GCTTGTACTTTCTCTTCTTGAAATCCA 60.041 37.037 0.00 0.00 33.65 3.41
73 74 7.041098 TGCTTGTACTTTCTCTTCTTGAAATCC 60.041 37.037 0.00 0.00 33.65 3.01
74 75 7.865707 TGCTTGTACTTTCTCTTCTTGAAATC 58.134 34.615 0.00 0.00 33.65 2.17
75 76 7.807977 TGCTTGTACTTTCTCTTCTTGAAAT 57.192 32.000 0.00 0.00 33.65 2.17
76 77 7.807977 ATGCTTGTACTTTCTCTTCTTGAAA 57.192 32.000 0.00 0.00 33.15 2.69
77 78 8.367911 TCTATGCTTGTACTTTCTCTTCTTGAA 58.632 33.333 0.00 0.00 0.00 2.69
78 79 7.896811 TCTATGCTTGTACTTTCTCTTCTTGA 58.103 34.615 0.00 0.00 0.00 3.02
79 80 8.539770 TTCTATGCTTGTACTTTCTCTTCTTG 57.460 34.615 0.00 0.00 0.00 3.02
80 81 9.561069 TTTTCTATGCTTGTACTTTCTCTTCTT 57.439 29.630 0.00 0.00 0.00 2.52
81 82 9.561069 TTTTTCTATGCTTGTACTTTCTCTTCT 57.439 29.630 0.00 0.00 0.00 2.85
106 107 9.720769 CCCGTATACCTGTCAAATTCTTATATT 57.279 33.333 0.00 0.00 0.00 1.28
107 108 8.877195 ACCCGTATACCTGTCAAATTCTTATAT 58.123 33.333 0.00 0.00 0.00 0.86
108 109 8.253867 ACCCGTATACCTGTCAAATTCTTATA 57.746 34.615 0.00 0.00 0.00 0.98
109 110 7.133133 ACCCGTATACCTGTCAAATTCTTAT 57.867 36.000 0.00 0.00 0.00 1.73
110 111 6.549433 ACCCGTATACCTGTCAAATTCTTA 57.451 37.500 0.00 0.00 0.00 2.10
111 112 5.431179 ACCCGTATACCTGTCAAATTCTT 57.569 39.130 0.00 0.00 0.00 2.52
112 113 5.895534 TCTACCCGTATACCTGTCAAATTCT 59.104 40.000 0.00 0.00 0.00 2.40
113 114 6.152932 TCTACCCGTATACCTGTCAAATTC 57.847 41.667 0.00 0.00 0.00 2.17
114 115 6.070653 TGTTCTACCCGTATACCTGTCAAATT 60.071 38.462 0.00 0.00 0.00 1.82
115 116 5.422970 TGTTCTACCCGTATACCTGTCAAAT 59.577 40.000 0.00 0.00 0.00 2.32
116 117 4.771577 TGTTCTACCCGTATACCTGTCAAA 59.228 41.667 0.00 0.00 0.00 2.69
117 118 4.158394 GTGTTCTACCCGTATACCTGTCAA 59.842 45.833 0.00 0.00 0.00 3.18
118 119 3.696051 GTGTTCTACCCGTATACCTGTCA 59.304 47.826 0.00 0.00 0.00 3.58
119 120 3.696051 TGTGTTCTACCCGTATACCTGTC 59.304 47.826 0.00 0.00 0.00 3.51
120 121 3.698040 CTGTGTTCTACCCGTATACCTGT 59.302 47.826 0.00 0.00 0.00 4.00
121 122 3.949754 TCTGTGTTCTACCCGTATACCTG 59.050 47.826 0.00 0.00 0.00 4.00
122 123 4.240881 TCTGTGTTCTACCCGTATACCT 57.759 45.455 0.00 0.00 0.00 3.08
123 124 5.526506 AATCTGTGTTCTACCCGTATACC 57.473 43.478 0.00 0.00 0.00 2.73
126 127 8.867097 ACAATATAATCTGTGTTCTACCCGTAT 58.133 33.333 0.00 0.00 0.00 3.06
127 128 8.241497 ACAATATAATCTGTGTTCTACCCGTA 57.759 34.615 0.00 0.00 0.00 4.02
128 129 7.120923 ACAATATAATCTGTGTTCTACCCGT 57.879 36.000 0.00 0.00 0.00 5.28
129 130 9.537192 TTTACAATATAATCTGTGTTCTACCCG 57.463 33.333 0.00 0.00 0.00 5.28
148 149 9.593134 TTCTGCAAGTTTTATGTGTTTTACAAT 57.407 25.926 0.00 0.00 37.89 2.71
149 150 8.988064 TTCTGCAAGTTTTATGTGTTTTACAA 57.012 26.923 0.00 0.00 37.89 2.41
150 151 8.988064 TTTCTGCAAGTTTTATGTGTTTTACA 57.012 26.923 0.00 0.00 38.49 2.41
153 154 9.816354 ACTATTTCTGCAAGTTTTATGTGTTTT 57.184 25.926 0.00 0.00 33.76 2.43
154 155 9.816354 AACTATTTCTGCAAGTTTTATGTGTTT 57.184 25.926 0.00 0.00 33.76 2.83
155 156 9.248291 CAACTATTTCTGCAAGTTTTATGTGTT 57.752 29.630 0.00 0.00 31.21 3.32
156 157 8.413229 ACAACTATTTCTGCAAGTTTTATGTGT 58.587 29.630 0.00 0.00 31.21 3.72
157 158 8.801715 ACAACTATTTCTGCAAGTTTTATGTG 57.198 30.769 0.00 0.00 31.21 3.21
158 159 9.816354 AAACAACTATTTCTGCAAGTTTTATGT 57.184 25.926 0.00 0.00 31.21 2.29
160 161 9.180678 CGAAACAACTATTTCTGCAAGTTTTAT 57.819 29.630 0.00 0.00 36.59 1.40
161 162 8.399425 TCGAAACAACTATTTCTGCAAGTTTTA 58.601 29.630 0.00 0.00 36.59 1.52
162 163 7.254852 TCGAAACAACTATTTCTGCAAGTTTT 58.745 30.769 0.00 0.00 36.59 2.43
163 164 6.791303 TCGAAACAACTATTTCTGCAAGTTT 58.209 32.000 0.00 0.00 36.59 2.66
164 165 6.371809 TCGAAACAACTATTTCTGCAAGTT 57.628 33.333 0.00 0.00 36.59 2.66
165 166 6.560253 ATCGAAACAACTATTTCTGCAAGT 57.440 33.333 0.00 0.00 36.59 3.16
166 167 7.963981 TCTATCGAAACAACTATTTCTGCAAG 58.036 34.615 0.00 0.00 36.59 4.01
167 168 7.899178 TCTATCGAAACAACTATTTCTGCAA 57.101 32.000 0.00 0.00 36.59 4.08
168 169 7.386573 TGTTCTATCGAAACAACTATTTCTGCA 59.613 33.333 0.00 0.00 36.59 4.41
169 170 7.688578 GTGTTCTATCGAAACAACTATTTCTGC 59.311 37.037 2.84 0.00 36.59 4.26
170 171 8.708742 TGTGTTCTATCGAAACAACTATTTCTG 58.291 33.333 2.84 0.00 36.59 3.02
171 172 8.827177 TGTGTTCTATCGAAACAACTATTTCT 57.173 30.769 2.84 0.00 36.59 2.52
172 173 9.530129 CTTGTGTTCTATCGAAACAACTATTTC 57.470 33.333 2.84 0.00 35.59 2.17
173 174 9.268268 TCTTGTGTTCTATCGAAACAACTATTT 57.732 29.630 2.84 0.00 32.28 1.40
174 175 8.827177 TCTTGTGTTCTATCGAAACAACTATT 57.173 30.769 2.84 0.00 32.28 1.73
175 176 8.827177 TTCTTGTGTTCTATCGAAACAACTAT 57.173 30.769 2.84 0.00 32.28 2.12
176 177 8.651391 TTTCTTGTGTTCTATCGAAACAACTA 57.349 30.769 2.84 0.00 32.28 2.24
177 178 7.548196 TTTCTTGTGTTCTATCGAAACAACT 57.452 32.000 2.84 0.00 32.28 3.16
178 179 7.908601 ACTTTTCTTGTGTTCTATCGAAACAAC 59.091 33.333 2.84 0.45 32.28 3.32
179 180 7.908082 CACTTTTCTTGTGTTCTATCGAAACAA 59.092 33.333 2.84 1.08 33.42 2.83
180 181 7.406553 CACTTTTCTTGTGTTCTATCGAAACA 58.593 34.615 0.00 0.00 0.00 2.83
181 182 6.357240 GCACTTTTCTTGTGTTCTATCGAAAC 59.643 38.462 0.00 0.00 37.70 2.78
182 183 6.037720 TGCACTTTTCTTGTGTTCTATCGAAA 59.962 34.615 0.00 0.00 37.70 3.46
183 184 5.525745 TGCACTTTTCTTGTGTTCTATCGAA 59.474 36.000 0.00 0.00 37.70 3.71
184 185 5.053811 TGCACTTTTCTTGTGTTCTATCGA 58.946 37.500 0.00 0.00 37.70 3.59
185 186 5.342806 TGCACTTTTCTTGTGTTCTATCG 57.657 39.130 0.00 0.00 37.70 2.92
186 187 6.902341 TGATGCACTTTTCTTGTGTTCTATC 58.098 36.000 0.00 0.00 37.70 2.08
187 188 6.882610 TGATGCACTTTTCTTGTGTTCTAT 57.117 33.333 0.00 0.00 37.70 1.98
188 189 6.691754 TTGATGCACTTTTCTTGTGTTCTA 57.308 33.333 0.00 0.00 37.70 2.10
189 190 5.581126 TTGATGCACTTTTCTTGTGTTCT 57.419 34.783 0.00 0.00 37.70 3.01
190 191 5.978919 TGATTGATGCACTTTTCTTGTGTTC 59.021 36.000 0.00 0.00 37.70 3.18
191 192 5.904941 TGATTGATGCACTTTTCTTGTGTT 58.095 33.333 0.00 0.00 37.70 3.32
192 193 5.518848 TGATTGATGCACTTTTCTTGTGT 57.481 34.783 0.00 0.00 37.70 3.72
193 194 8.115491 CATATGATTGATGCACTTTTCTTGTG 57.885 34.615 0.00 0.00 38.36 3.33
205 206 5.292671 ACTCATTCGCATATGATTGATGC 57.707 39.130 6.97 0.00 45.12 3.91
206 207 7.355332 TGTACTCATTCGCATATGATTGATG 57.645 36.000 6.97 4.88 34.24 3.07
207 208 7.967890 TTGTACTCATTCGCATATGATTGAT 57.032 32.000 6.97 0.00 34.24 2.57
208 209 7.784633 TTTGTACTCATTCGCATATGATTGA 57.215 32.000 6.97 2.40 34.24 2.57
209 210 8.839947 TTTTTGTACTCATTCGCATATGATTG 57.160 30.769 6.97 0.00 34.24 2.67
231 232 7.281040 TCAACATCTTCTGCAATCTCTTTTT 57.719 32.000 0.00 0.00 0.00 1.94
232 233 6.889301 TCAACATCTTCTGCAATCTCTTTT 57.111 33.333 0.00 0.00 0.00 2.27
233 234 6.889301 TTCAACATCTTCTGCAATCTCTTT 57.111 33.333 0.00 0.00 0.00 2.52
234 235 6.889301 TTTCAACATCTTCTGCAATCTCTT 57.111 33.333 0.00 0.00 0.00 2.85
235 236 8.749026 ATATTTCAACATCTTCTGCAATCTCT 57.251 30.769 0.00 0.00 0.00 3.10
262 263 9.783081 TCTAGGGTCGTTTTTAATCTTTTTAGT 57.217 29.630 0.00 0.00 0.00 2.24
264 265 9.558396 TGTCTAGGGTCGTTTTTAATCTTTTTA 57.442 29.630 0.00 0.00 0.00 1.52
265 266 8.454570 TGTCTAGGGTCGTTTTTAATCTTTTT 57.545 30.769 0.00 0.00 0.00 1.94
266 267 7.718314 ACTGTCTAGGGTCGTTTTTAATCTTTT 59.282 33.333 0.00 0.00 0.00 2.27
267 268 7.222161 ACTGTCTAGGGTCGTTTTTAATCTTT 58.778 34.615 0.00 0.00 0.00 2.52
268 269 6.766429 ACTGTCTAGGGTCGTTTTTAATCTT 58.234 36.000 0.00 0.00 0.00 2.40
269 270 6.356186 ACTGTCTAGGGTCGTTTTTAATCT 57.644 37.500 0.00 0.00 0.00 2.40
270 271 5.579904 GGACTGTCTAGGGTCGTTTTTAATC 59.420 44.000 7.85 0.00 33.70 1.75
271 272 5.247792 AGGACTGTCTAGGGTCGTTTTTAAT 59.752 40.000 7.85 0.00 33.70 1.40
272 273 4.590222 AGGACTGTCTAGGGTCGTTTTTAA 59.410 41.667 7.85 0.00 33.70 1.52
273 274 4.021719 CAGGACTGTCTAGGGTCGTTTTTA 60.022 45.833 7.85 0.00 33.70 1.52
274 275 2.970640 AGGACTGTCTAGGGTCGTTTTT 59.029 45.455 7.85 0.00 33.70 1.94
275 276 2.299297 CAGGACTGTCTAGGGTCGTTTT 59.701 50.000 7.85 0.00 33.70 2.43
276 277 1.893801 CAGGACTGTCTAGGGTCGTTT 59.106 52.381 7.85 0.00 33.70 3.60
277 278 1.075050 TCAGGACTGTCTAGGGTCGTT 59.925 52.381 7.85 0.00 33.70 3.85
278 279 0.697079 TCAGGACTGTCTAGGGTCGT 59.303 55.000 7.85 0.00 33.70 4.34
279 280 2.060050 ATCAGGACTGTCTAGGGTCG 57.940 55.000 7.85 0.00 33.70 4.79
280 281 4.339814 CACTTATCAGGACTGTCTAGGGTC 59.660 50.000 7.85 0.00 0.00 4.46
281 282 4.282496 CACTTATCAGGACTGTCTAGGGT 58.718 47.826 7.85 0.00 0.00 4.34
282 283 3.068873 GCACTTATCAGGACTGTCTAGGG 59.931 52.174 7.85 0.00 0.00 3.53
283 284 3.957497 AGCACTTATCAGGACTGTCTAGG 59.043 47.826 7.85 0.00 0.00 3.02
284 285 4.887071 AGAGCACTTATCAGGACTGTCTAG 59.113 45.833 7.85 0.93 0.00 2.43
285 286 4.861196 AGAGCACTTATCAGGACTGTCTA 58.139 43.478 7.85 0.00 0.00 2.59
286 287 3.707316 AGAGCACTTATCAGGACTGTCT 58.293 45.455 7.85 0.00 0.00 3.41
287 288 4.180057 CAAGAGCACTTATCAGGACTGTC 58.820 47.826 0.00 0.00 34.70 3.51
288 289 3.580458 ACAAGAGCACTTATCAGGACTGT 59.420 43.478 0.00 0.00 34.70 3.55
289 290 3.931468 CACAAGAGCACTTATCAGGACTG 59.069 47.826 0.00 0.00 34.70 3.51
290 291 3.580458 ACACAAGAGCACTTATCAGGACT 59.420 43.478 0.00 0.00 34.70 3.85
291 292 3.931578 ACACAAGAGCACTTATCAGGAC 58.068 45.455 0.00 0.00 34.70 3.85
292 293 5.939764 ATACACAAGAGCACTTATCAGGA 57.060 39.130 0.00 0.00 34.70 3.86
293 294 6.108687 TCAATACACAAGAGCACTTATCAGG 58.891 40.000 0.00 0.00 34.70 3.86
294 295 7.413438 GGTTCAATACACAAGAGCACTTATCAG 60.413 40.741 0.00 0.00 34.70 2.90
295 296 6.371548 GGTTCAATACACAAGAGCACTTATCA 59.628 38.462 0.00 0.00 34.70 2.15
296 297 6.595716 AGGTTCAATACACAAGAGCACTTATC 59.404 38.462 0.00 0.00 34.70 1.75
297 298 6.476378 AGGTTCAATACACAAGAGCACTTAT 58.524 36.000 0.00 0.00 34.70 1.73
298 299 5.865085 AGGTTCAATACACAAGAGCACTTA 58.135 37.500 0.00 0.00 34.70 2.24
299 300 4.718961 AGGTTCAATACACAAGAGCACTT 58.281 39.130 0.00 0.00 36.73 3.16
300 301 4.357918 AGGTTCAATACACAAGAGCACT 57.642 40.909 0.00 0.00 0.00 4.40
301 302 5.008613 TCAAAGGTTCAATACACAAGAGCAC 59.991 40.000 0.00 0.00 0.00 4.40
302 303 5.129634 TCAAAGGTTCAATACACAAGAGCA 58.870 37.500 0.00 0.00 0.00 4.26
303 304 5.689383 TCAAAGGTTCAATACACAAGAGC 57.311 39.130 0.00 0.00 0.00 4.09
304 305 8.925161 TTTTTCAAAGGTTCAATACACAAGAG 57.075 30.769 0.00 0.00 0.00 2.85
338 339 7.363268 GGCATTCTCTACTTCCATGATGTTTTT 60.363 37.037 0.00 0.00 0.00 1.94
339 340 6.096001 GGCATTCTCTACTTCCATGATGTTTT 59.904 38.462 0.00 0.00 0.00 2.43
340 341 5.591877 GGCATTCTCTACTTCCATGATGTTT 59.408 40.000 0.00 0.00 0.00 2.83
341 342 5.128919 GGCATTCTCTACTTCCATGATGTT 58.871 41.667 0.00 0.00 0.00 2.71
342 343 4.164796 TGGCATTCTCTACTTCCATGATGT 59.835 41.667 0.00 0.00 0.00 3.06
343 344 4.711399 TGGCATTCTCTACTTCCATGATG 58.289 43.478 0.00 0.00 0.00 3.07
344 345 5.131642 TCTTGGCATTCTCTACTTCCATGAT 59.868 40.000 0.00 0.00 0.00 2.45
345 346 4.471025 TCTTGGCATTCTCTACTTCCATGA 59.529 41.667 0.00 0.00 0.00 3.07
346 347 4.774124 TCTTGGCATTCTCTACTTCCATG 58.226 43.478 0.00 0.00 0.00 3.66
347 348 4.718774 TCTCTTGGCATTCTCTACTTCCAT 59.281 41.667 0.00 0.00 0.00 3.41
348 349 4.096681 TCTCTTGGCATTCTCTACTTCCA 58.903 43.478 0.00 0.00 0.00 3.53
349 350 4.404073 TCTCTCTTGGCATTCTCTACTTCC 59.596 45.833 0.00 0.00 0.00 3.46
350 351 5.590530 TCTCTCTTGGCATTCTCTACTTC 57.409 43.478 0.00 0.00 0.00 3.01
351 352 5.660417 TCATCTCTCTTGGCATTCTCTACTT 59.340 40.000 0.00 0.00 0.00 2.24
352 353 5.207354 TCATCTCTCTTGGCATTCTCTACT 58.793 41.667 0.00 0.00 0.00 2.57
353 354 5.528043 TCATCTCTCTTGGCATTCTCTAC 57.472 43.478 0.00 0.00 0.00 2.59
354 355 5.837438 TCATCATCTCTCTTGGCATTCTCTA 59.163 40.000 0.00 0.00 0.00 2.43
355 356 4.654724 TCATCATCTCTCTTGGCATTCTCT 59.345 41.667 0.00 0.00 0.00 3.10
356 357 4.751098 GTCATCATCTCTCTTGGCATTCTC 59.249 45.833 0.00 0.00 0.00 2.87
357 358 4.444591 GGTCATCATCTCTCTTGGCATTCT 60.445 45.833 0.00 0.00 0.00 2.40
358 359 3.814283 GGTCATCATCTCTCTTGGCATTC 59.186 47.826 0.00 0.00 0.00 2.67
359 360 3.434739 GGGTCATCATCTCTCTTGGCATT 60.435 47.826 0.00 0.00 0.00 3.56
360 361 2.106166 GGGTCATCATCTCTCTTGGCAT 59.894 50.000 0.00 0.00 0.00 4.40
361 362 1.487976 GGGTCATCATCTCTCTTGGCA 59.512 52.381 0.00 0.00 0.00 4.92
362 363 1.487976 TGGGTCATCATCTCTCTTGGC 59.512 52.381 0.00 0.00 0.00 4.52
363 364 2.158842 GGTGGGTCATCATCTCTCTTGG 60.159 54.545 0.00 0.00 0.00 3.61
364 365 2.158842 GGGTGGGTCATCATCTCTCTTG 60.159 54.545 0.00 0.00 0.00 3.02
365 366 2.122768 GGGTGGGTCATCATCTCTCTT 58.877 52.381 0.00 0.00 0.00 2.85
366 367 1.799933 GGGTGGGTCATCATCTCTCT 58.200 55.000 0.00 0.00 0.00 3.10
367 368 0.390860 CGGGTGGGTCATCATCTCTC 59.609 60.000 0.00 0.00 0.00 3.20
368 369 0.325671 ACGGGTGGGTCATCATCTCT 60.326 55.000 0.00 0.00 0.00 3.10
369 370 0.179073 CACGGGTGGGTCATCATCTC 60.179 60.000 0.00 0.00 0.00 2.75
370 371 0.617535 TCACGGGTGGGTCATCATCT 60.618 55.000 0.00 0.00 0.00 2.90
371 372 0.251916 TTCACGGGTGGGTCATCATC 59.748 55.000 0.00 0.00 0.00 2.92
372 373 0.695924 TTTCACGGGTGGGTCATCAT 59.304 50.000 0.00 0.00 0.00 2.45
373 374 0.474614 TTTTCACGGGTGGGTCATCA 59.525 50.000 0.00 0.00 0.00 3.07
374 375 1.834188 ATTTTCACGGGTGGGTCATC 58.166 50.000 0.00 0.00 0.00 2.92
375 376 2.302587 AATTTTCACGGGTGGGTCAT 57.697 45.000 0.00 0.00 0.00 3.06
376 377 2.074729 AAATTTTCACGGGTGGGTCA 57.925 45.000 0.00 0.00 0.00 4.02
377 378 3.759618 TGATAAATTTTCACGGGTGGGTC 59.240 43.478 0.00 0.00 0.00 4.46
378 379 3.768878 TGATAAATTTTCACGGGTGGGT 58.231 40.909 0.00 0.00 0.00 4.51
379 380 4.792521 TTGATAAATTTTCACGGGTGGG 57.207 40.909 0.00 0.00 0.00 4.61
380 381 7.665561 ATTTTTGATAAATTTTCACGGGTGG 57.334 32.000 0.00 0.00 0.00 4.61
410 411 8.562052 TGATTTATGCACATGACATGATTAGTC 58.438 33.333 22.19 6.36 36.55 2.59
411 412 8.347771 GTGATTTATGCACATGACATGATTAGT 58.652 33.333 22.19 6.42 36.31 2.24
412 413 8.347035 TGTGATTTATGCACATGACATGATTAG 58.653 33.333 22.19 9.45 41.00 1.73
413 414 8.223177 TGTGATTTATGCACATGACATGATTA 57.777 30.769 22.19 7.47 41.00 1.75
414 415 7.067737 TCTGTGATTTATGCACATGACATGATT 59.932 33.333 22.19 6.03 44.42 2.57
415 416 6.544564 TCTGTGATTTATGCACATGACATGAT 59.455 34.615 22.19 7.78 44.42 2.45
416 417 5.881443 TCTGTGATTTATGCACATGACATGA 59.119 36.000 22.19 0.00 44.42 3.07
417 418 6.126568 TCTGTGATTTATGCACATGACATG 57.873 37.500 14.02 14.02 44.42 3.21
418 419 6.600427 TCTTCTGTGATTTATGCACATGACAT 59.400 34.615 0.00 5.43 44.42 3.06
419 420 5.939296 TCTTCTGTGATTTATGCACATGACA 59.061 36.000 0.00 0.00 44.42 3.58
420 421 6.426980 TCTTCTGTGATTTATGCACATGAC 57.573 37.500 0.00 0.00 44.42 3.06
421 422 6.656270 AGTTCTTCTGTGATTTATGCACATGA 59.344 34.615 0.00 0.00 44.42 3.07
422 423 6.849502 AGTTCTTCTGTGATTTATGCACATG 58.150 36.000 0.00 0.00 44.42 3.21
423 424 7.175467 TGAAGTTCTTCTGTGATTTATGCACAT 59.825 33.333 12.74 0.00 44.42 3.21
424 425 6.486320 TGAAGTTCTTCTGTGATTTATGCACA 59.514 34.615 12.74 0.00 43.41 4.57
425 426 6.902341 TGAAGTTCTTCTGTGATTTATGCAC 58.098 36.000 12.74 0.00 36.81 4.57
426 427 7.692460 ATGAAGTTCTTCTGTGATTTATGCA 57.308 32.000 12.74 0.00 0.00 3.96
427 428 8.976986 AAATGAAGTTCTTCTGTGATTTATGC 57.023 30.769 12.74 0.00 0.00 3.14
439 440 7.383102 TGGCAGAAGATAAATGAAGTTCTTC 57.617 36.000 4.17 5.70 42.74 2.87
440 441 7.765695 TTGGCAGAAGATAAATGAAGTTCTT 57.234 32.000 4.17 0.00 0.00 2.52
441 442 7.765695 TTTGGCAGAAGATAAATGAAGTTCT 57.234 32.000 4.17 0.00 0.00 3.01
442 443 8.992835 AATTTGGCAGAAGATAAATGAAGTTC 57.007 30.769 0.00 0.00 0.00 3.01
443 444 9.783081 AAAATTTGGCAGAAGATAAATGAAGTT 57.217 25.926 0.00 0.00 0.00 2.66
444 445 9.211485 CAAAATTTGGCAGAAGATAAATGAAGT 57.789 29.630 0.00 0.00 0.00 3.01
445 446 8.662141 CCAAAATTTGGCAGAAGATAAATGAAG 58.338 33.333 12.23 0.00 45.17 3.02
462 463 9.362539 CTAGGAATTTCTGACATCCAAAATTTG 57.637 33.333 0.00 0.00 32.90 2.32
471 472 5.240403 GGGAATGCTAGGAATTTCTGACATC 59.760 44.000 0.00 0.00 0.00 3.06
478 479 6.207614 GTGGAATAGGGAATGCTAGGAATTTC 59.792 42.308 0.00 0.00 0.00 2.17
535 536 7.102847 TCATTGAAGAATAATGAGCATGCAA 57.897 32.000 21.98 8.14 39.05 4.08
557 558 4.754618 ACAGTGTGAATTTACGCTTCATCA 59.245 37.500 13.26 0.00 39.25 3.07
568 569 3.181445 TGCCTGAGGTACAGTGTGAATTT 60.181 43.478 5.88 0.00 44.40 1.82
569 570 2.371841 TGCCTGAGGTACAGTGTGAATT 59.628 45.455 5.88 0.00 44.40 2.17
686 722 3.667429 GAGCACGCATTTGGACGCC 62.667 63.158 0.00 0.00 0.00 5.68
752 795 8.454106 ACTATTTGCTGACTAAATTAGCTTGTG 58.546 33.333 0.00 0.00 38.25 3.33
753 796 8.567285 ACTATTTGCTGACTAAATTAGCTTGT 57.433 30.769 0.00 0.00 38.25 3.16
754 797 9.846248 AAACTATTTGCTGACTAAATTAGCTTG 57.154 29.630 0.00 0.00 38.25 4.01
755 798 9.846248 CAAACTATTTGCTGACTAAATTAGCTT 57.154 29.630 0.00 0.00 38.25 3.74
825 871 1.106944 CAATATGGTGGGAACGGGGC 61.107 60.000 0.00 0.00 0.00 5.80
984 1035 4.202451 TGAAACATGACACTGGAAGATGGA 60.202 41.667 0.00 0.00 37.43 3.41
994 1045 3.701040 ACAAAGGCTTGAAACATGACACT 59.299 39.130 0.00 0.00 36.33 3.55
1000 1051 4.385358 ACGAAACAAAGGCTTGAAACAT 57.615 36.364 0.00 0.00 36.33 2.71
1007 1058 4.546570 GCATAGAAACGAAACAAAGGCTT 58.453 39.130 0.00 0.00 0.00 4.35
1010 1061 4.455877 AGAGGCATAGAAACGAAACAAAGG 59.544 41.667 0.00 0.00 0.00 3.11
1019 1070 4.870426 TGAAGCTAAAGAGGCATAGAAACG 59.130 41.667 0.00 0.00 0.00 3.60
1042 1093 1.473434 GGCTAGTCGTAGGCTGCAAAT 60.473 52.381 2.89 0.00 46.61 2.32
1055 1106 3.944015 AGTTTCATTGCAGATGGCTAGTC 59.056 43.478 8.40 0.00 45.15 2.59
1204 1255 0.526211 TCAATCACACGACGAGGAGG 59.474 55.000 0.00 0.00 0.00 4.30
1527 2012 9.756571 TTTGGTAGTTTTCCAATAAGCCTATTA 57.243 29.630 0.00 0.00 43.25 0.98
1538 2023 4.141251 AGAGAGCCTTTGGTAGTTTTCCAA 60.141 41.667 0.00 0.00 42.29 3.53
1737 2294 5.525012 ACGCCCTACTAAATTATTTTCCGTC 59.475 40.000 0.00 0.00 0.00 4.79
1787 2344 5.185249 GTCAAGGTCAGTATCTCCAGTGTTA 59.815 44.000 0.00 0.00 0.00 2.41
1950 2507 5.949735 TCAAACTTGTTTGTTGAGAGAACC 58.050 37.500 20.99 0.00 33.82 3.62
1953 2510 5.450412 GCCATCAAACTTGTTTGTTGAGAGA 60.450 40.000 26.05 9.97 34.99 3.10
2133 2690 5.062308 GGTACAATTTGCTAGTGAAGAGACG 59.938 44.000 0.00 0.00 0.00 4.18
2148 2705 7.001674 TCAACATAGTCAACCTGGTACAATTT 58.998 34.615 0.00 0.00 38.70 1.82
2149 2706 6.539173 TCAACATAGTCAACCTGGTACAATT 58.461 36.000 0.00 0.00 38.70 2.32
2338 2897 5.250200 TGTTGGTGGTATATTTCCAGTGAC 58.750 41.667 0.00 1.56 35.49 3.67
2463 3022 6.128007 CGCTAATGTTGTTCCTATCCAACTTT 60.128 38.462 0.00 0.00 41.16 2.66
2505 3064 5.977635 TGGAGTTGAGTACAATGTCCTATG 58.022 41.667 0.00 0.00 40.06 2.23
2644 3203 4.365514 TGAGATTGCCAACTTCCACTAA 57.634 40.909 0.00 0.00 0.00 2.24
2645 3204 4.574674 ATGAGATTGCCAACTTCCACTA 57.425 40.909 0.00 0.00 0.00 2.74
2790 3421 3.944087 ACTTAAGGATGTGAGGAACTGC 58.056 45.455 7.53 0.00 41.55 4.40
3411 4310 2.684943 TCTAGGTTCCCATTCGGCATA 58.315 47.619 0.00 0.00 0.00 3.14
3790 7179 9.396022 ACAATTAGGGAATCTACAGTAATTGTG 57.604 33.333 14.37 0.00 43.94 3.33
3864 8738 2.770164 ACTGTAGACATCACCCTTGC 57.230 50.000 0.00 0.00 0.00 4.01
4040 8914 3.181465 ACACAGTTCTTCATCACTTCCGT 60.181 43.478 0.00 0.00 0.00 4.69
4144 9018 4.826183 GCCAGATGCTTGATTCTAAGGATT 59.174 41.667 0.00 0.00 38.60 3.01
4177 9051 4.290711 TCCTTTGCTTCATCTGACATCA 57.709 40.909 0.00 0.00 0.00 3.07
4203 9077 4.790718 TCTGTCACTAGCTACCATCCTA 57.209 45.455 0.00 0.00 0.00 2.94
4400 9283 3.491619 GCAAATCGGTCTAGCTCTGATCA 60.492 47.826 0.00 0.00 31.48 2.92
4521 9405 4.322499 GGTTCTCAATCCCGTTAACTCTGA 60.322 45.833 3.71 0.00 0.00 3.27
4617 9502 2.030958 AAACTAGGTTTCCGCGGCG 61.031 57.895 23.51 16.78 28.86 6.46
4641 9526 1.043673 GGCAGTCAGTATCGAGGGGT 61.044 60.000 0.00 0.00 0.00 4.95
4678 9563 3.724494 GCGCTACAATCAGAGGGC 58.276 61.111 0.00 0.00 43.27 5.19
4699 9584 3.920231 TCTCTTCAGCCATAGCAACAT 57.080 42.857 0.00 0.00 43.56 2.71
4707 9592 2.575279 ACATGGTCTTCTCTTCAGCCAT 59.425 45.455 0.00 0.00 37.21 4.40
4876 9768 3.834610 TCGTTTGCTTACTAGAGTCTGC 58.165 45.455 1.86 0.00 0.00 4.26
4929 9825 7.010738 GTGTTCAATTGCCGTTATTAGCTAGTA 59.989 37.037 0.00 0.00 0.00 1.82
4930 9826 5.878116 TGTTCAATTGCCGTTATTAGCTAGT 59.122 36.000 0.00 0.00 0.00 2.57
5072 10051 2.908688 ATTTTGGTCCTGGTTTGCAC 57.091 45.000 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.