Multiple sequence alignment - TraesCS7B01G260700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G260700 chr7B 100.000 3690 0 0 794 4483 481071725 481068036 0.000000e+00 6815.0
1 TraesCS7B01G260700 chr7B 100.000 571 0 0 1 571 481072518 481071948 0.000000e+00 1055.0
2 TraesCS7B01G260700 chr7B 93.293 164 11 0 1433 1596 488407915 488408078 4.480000e-60 243.0
3 TraesCS7B01G260700 chr7B 92.216 167 12 1 1433 1599 516814190 516814025 7.500000e-58 235.0
4 TraesCS7B01G260700 chr7B 90.833 120 11 0 3782 3901 88565839 88565720 1.290000e-35 161.0
5 TraesCS7B01G260700 chr7B 87.903 124 15 0 3784 3907 147076023 147075900 3.610000e-31 147.0
6 TraesCS7B01G260700 chr7D 94.031 1843 79 13 1964 3786 459080775 459078944 0.000000e+00 2765.0
7 TraesCS7B01G260700 chr7D 94.063 539 28 3 3899 4435 459078946 459078410 0.000000e+00 815.0
8 TraesCS7B01G260700 chr7D 90.550 582 36 10 6 570 459082304 459081725 0.000000e+00 752.0
9 TraesCS7B01G260700 chr7D 88.073 654 47 18 794 1436 459081663 459081030 0.000000e+00 747.0
10 TraesCS7B01G260700 chr7D 86.475 244 19 9 1592 1831 459081035 459080802 5.750000e-64 255.0
11 TraesCS7B01G260700 chr7D 91.813 171 12 2 1428 1597 24559350 24559181 2.080000e-58 237.0
12 TraesCS7B01G260700 chr7A 91.006 1868 142 18 1954 3808 540951602 540953456 0.000000e+00 2495.0
13 TraesCS7B01G260700 chr7A 89.455 550 42 12 3899 4435 540953499 540954045 0.000000e+00 680.0
14 TraesCS7B01G260700 chr7A 83.363 571 57 20 794 1349 540950734 540951281 1.120000e-135 494.0
15 TraesCS7B01G260700 chr7A 91.813 171 12 2 1428 1597 469059212 469059381 2.080000e-58 237.0
16 TraesCS7B01G260700 chr7A 85.000 220 10 6 262 460 540950065 540950282 7.600000e-48 202.0
17 TraesCS7B01G260700 chr7A 87.302 126 13 3 3785 3908 628261329 628261453 1.680000e-29 141.0
18 TraesCS7B01G260700 chr7A 85.606 132 17 2 3781 3910 280535456 280535325 2.170000e-28 137.0
19 TraesCS7B01G260700 chr7A 97.826 46 1 0 4435 4480 510625291 510625336 3.720000e-11 80.5
20 TraesCS7B01G260700 chr5D 91.813 171 12 2 1428 1597 424408487 424408656 2.080000e-58 237.0
21 TraesCS7B01G260700 chr2A 92.216 167 13 0 1429 1595 250729540 250729706 2.080000e-58 237.0
22 TraesCS7B01G260700 chr1D 91.813 171 12 2 1428 1597 227425468 227425299 2.080000e-58 237.0
23 TraesCS7B01G260700 chr2D 91.329 173 12 3 1428 1599 351614627 351614797 2.700000e-57 233.0
24 TraesCS7B01G260700 chr4B 87.817 197 17 6 1413 1606 483266560 483266368 1.620000e-54 224.0
25 TraesCS7B01G260700 chr4B 97.143 35 1 0 4432 4466 178645453 178645487 4.840000e-05 60.2
26 TraesCS7B01G260700 chr1B 94.872 117 6 0 3785 3901 453509334 453509450 2.750000e-42 183.0
27 TraesCS7B01G260700 chr2B 92.683 123 9 0 3783 3905 497026012 497025890 1.280000e-40 178.0
28 TraesCS7B01G260700 chr2B 89.431 123 12 1 3781 3902 197218151 197218273 2.160000e-33 154.0
29 TraesCS7B01G260700 chr2B 87.402 127 14 2 3784 3909 704429954 704429829 1.300000e-30 145.0
30 TraesCS7B01G260700 chr2B 93.750 48 1 2 4433 4478 431171379 431171426 2.240000e-08 71.3
31 TraesCS7B01G260700 chr2B 97.222 36 1 0 4432 4467 232780037 232780072 1.350000e-05 62.1
32 TraesCS7B01G260700 chr2B 91.111 45 1 2 4416 4457 134091699 134091655 1.740000e-04 58.4
33 TraesCS7B01G260700 chr6B 87.402 127 16 0 3782 3908 642731138 642731012 3.610000e-31 147.0
34 TraesCS7B01G260700 chr3A 97.917 48 1 0 4435 4482 531451941 531451988 2.870000e-12 84.2
35 TraesCS7B01G260700 chr3A 91.304 46 4 0 4431 4476 501224058 501224013 3.740000e-06 63.9
36 TraesCS7B01G260700 chr4A 94.000 50 3 0 4434 4483 42785111 42785062 4.810000e-10 76.8
37 TraesCS7B01G260700 chr3D 100.000 34 0 0 4434 4467 347611650 347611617 3.740000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G260700 chr7B 481068036 481072518 4482 True 3935.00 6815 100.0000 1 4483 2 chr7B.!!$R4 4482
1 TraesCS7B01G260700 chr7D 459078410 459082304 3894 True 1066.80 2765 90.6384 6 4435 5 chr7D.!!$R2 4429
2 TraesCS7B01G260700 chr7A 540950065 540954045 3980 False 967.75 2495 87.2060 262 4435 4 chr7A.!!$F4 4173

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
955 1294 0.178944 TCCGTTGGAGACTTGGGAGA 60.179 55.0 0.00 0.0 0.00 3.71 F
1440 1796 0.037232 AGCAGAACAAGTACTCCCGC 60.037 55.0 0.00 0.0 0.00 6.13 F
1897 2275 0.108804 GTGAACAGTAGCCAGCGCTA 60.109 55.0 10.99 0.0 46.08 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1890 2268 0.246635 AACTAGTGGGTGTAGCGCTG 59.753 55.0 22.9 0.53 0.00 5.18 R
2373 2754 0.251916 TTGGTATTGAGTGCCTCCGG 59.748 55.0 0.0 0.00 33.07 5.14 R
3860 4268 0.246635 CTTGTCGGAGGAACGGATGT 59.753 55.0 0.0 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.117523 TCCATGAATTTTGGAAAGCAAATTACG 59.882 33.333 8.25 0.00 40.29 3.18
43 44 7.636259 TGAATTTTGGAAAGCAAATTACGAG 57.364 32.000 0.00 0.00 33.62 4.18
191 198 4.240175 TGAAAAACCCGAATAAAACCGG 57.760 40.909 0.00 0.00 44.94 5.28
192 199 2.728690 AAAACCCGAATAAAACCGGC 57.271 45.000 0.00 0.00 44.07 6.13
205 212 4.351054 CCGGCTGCCCTCAAACCT 62.351 66.667 14.12 0.00 0.00 3.50
220 227 5.449999 CCTCAAACCTGAAACACAAACTACC 60.450 44.000 0.00 0.00 0.00 3.18
225 232 2.215196 TGAAACACAAACTACCCGCTC 58.785 47.619 0.00 0.00 0.00 5.03
246 253 3.792736 GTACATGGGCCGGGCTGA 61.793 66.667 28.80 15.38 0.00 4.26
333 348 3.264845 AAATGGACCCCACGGCCT 61.265 61.111 0.00 0.00 35.80 5.19
347 362 2.818274 GCCTCTTAACCCCGCGTG 60.818 66.667 4.92 0.00 0.00 5.34
873 1186 2.366640 TCCATTCCAAAACCGAACCA 57.633 45.000 0.00 0.00 0.00 3.67
880 1193 1.483004 CCAAAACCGAACCAAAACCCT 59.517 47.619 0.00 0.00 0.00 4.34
951 1290 3.559238 CAATTTCCGTTGGAGACTTGG 57.441 47.619 0.00 0.00 31.21 3.61
952 1291 2.200373 ATTTCCGTTGGAGACTTGGG 57.800 50.000 0.00 0.00 31.21 4.12
953 1292 1.133363 TTTCCGTTGGAGACTTGGGA 58.867 50.000 0.00 0.00 31.21 4.37
954 1293 0.685097 TTCCGTTGGAGACTTGGGAG 59.315 55.000 0.00 0.00 31.21 4.30
955 1294 0.178944 TCCGTTGGAGACTTGGGAGA 60.179 55.000 0.00 0.00 0.00 3.71
956 1295 0.247736 CCGTTGGAGACTTGGGAGAG 59.752 60.000 0.00 0.00 0.00 3.20
957 1296 0.247736 CGTTGGAGACTTGGGAGAGG 59.752 60.000 0.00 0.00 0.00 3.69
962 1301 0.612453 GAGACTTGGGAGAGGTCCGT 60.612 60.000 0.00 0.00 45.05 4.69
980 1319 1.987855 TTCGATTCCTCGCCTGGGT 60.988 57.895 0.00 0.00 44.65 4.51
998 1337 2.195567 TGGGTCCGTCGTTCGAGTT 61.196 57.895 0.00 0.00 42.86 3.01
1006 1345 0.389948 GTCGTTCGAGTTCATGGCCT 60.390 55.000 3.32 0.00 0.00 5.19
1052 1391 2.157668 GCGGTATGCGGAGATATTGTTG 59.842 50.000 0.00 0.00 0.00 3.33
1093 1432 0.679960 GGGATTTTGGGTGGAGGTCG 60.680 60.000 0.00 0.00 0.00 4.79
1094 1433 0.326927 GGATTTTGGGTGGAGGTCGA 59.673 55.000 0.00 0.00 0.00 4.20
1095 1434 1.679032 GGATTTTGGGTGGAGGTCGAG 60.679 57.143 0.00 0.00 0.00 4.04
1096 1435 0.322546 ATTTTGGGTGGAGGTCGAGC 60.323 55.000 6.48 6.48 0.00 5.03
1105 1444 2.034376 AGGTCGAGCGAGTGGTCT 59.966 61.111 9.28 0.00 40.48 3.85
1130 1473 3.621558 GGTTCTGATCTAGGGTTTTGGG 58.378 50.000 0.00 0.00 0.00 4.12
1242 1585 1.834822 GGATGCTCCTCCTAGCGGT 60.835 63.158 0.00 0.00 45.85 5.68
1289 1633 1.007963 TCCCATCTTACCTCCCGTTCT 59.992 52.381 0.00 0.00 0.00 3.01
1290 1634 1.413077 CCCATCTTACCTCCCGTTCTC 59.587 57.143 0.00 0.00 0.00 2.87
1307 1651 4.394795 GTTCTCGTTCCGACATTTTGATG 58.605 43.478 0.00 0.00 0.00 3.07
1316 1660 9.106286 CGTTCCGACATTTTGATGATATTATTG 57.894 33.333 0.00 0.00 0.00 1.90
1419 1775 9.672673 TTTTTAAATACTCTCAGAGAGGAATGG 57.327 33.333 27.91 6.49 46.45 3.16
1426 1782 2.765135 CTCAGAGAGGAATGGAAGCAGA 59.235 50.000 0.00 0.00 0.00 4.26
1431 1787 3.683802 AGAGGAATGGAAGCAGAACAAG 58.316 45.455 0.00 0.00 0.00 3.16
1432 1788 3.073650 AGAGGAATGGAAGCAGAACAAGT 59.926 43.478 0.00 0.00 0.00 3.16
1433 1789 4.287067 AGAGGAATGGAAGCAGAACAAGTA 59.713 41.667 0.00 0.00 0.00 2.24
1434 1790 4.327680 AGGAATGGAAGCAGAACAAGTAC 58.672 43.478 0.00 0.00 0.00 2.73
1435 1791 4.042187 AGGAATGGAAGCAGAACAAGTACT 59.958 41.667 0.00 0.00 0.00 2.73
1436 1792 4.393371 GGAATGGAAGCAGAACAAGTACTC 59.607 45.833 0.00 0.00 0.00 2.59
1437 1793 3.402628 TGGAAGCAGAACAAGTACTCC 57.597 47.619 0.00 0.00 0.00 3.85
1438 1794 2.038557 TGGAAGCAGAACAAGTACTCCC 59.961 50.000 0.00 0.00 0.00 4.30
1439 1795 2.338500 GAAGCAGAACAAGTACTCCCG 58.662 52.381 0.00 0.00 0.00 5.14
1440 1796 0.037232 AGCAGAACAAGTACTCCCGC 60.037 55.000 0.00 0.00 0.00 6.13
1441 1797 1.019805 GCAGAACAAGTACTCCCGCC 61.020 60.000 0.00 0.00 0.00 6.13
1442 1798 0.736325 CAGAACAAGTACTCCCGCCG 60.736 60.000 0.00 0.00 0.00 6.46
1443 1799 1.183676 AGAACAAGTACTCCCGCCGT 61.184 55.000 0.00 0.00 0.00 5.68
1444 1800 0.320160 GAACAAGTACTCCCGCCGTT 60.320 55.000 0.00 0.00 0.00 4.44
1445 1801 0.320160 AACAAGTACTCCCGCCGTTC 60.320 55.000 0.00 0.00 0.00 3.95
1446 1802 1.447314 CAAGTACTCCCGCCGTTCC 60.447 63.158 0.00 0.00 0.00 3.62
1447 1803 1.608627 AAGTACTCCCGCCGTTCCT 60.609 57.895 0.00 0.00 0.00 3.36
1448 1804 0.323725 AAGTACTCCCGCCGTTCCTA 60.324 55.000 0.00 0.00 0.00 2.94
1449 1805 0.323725 AGTACTCCCGCCGTTCCTAA 60.324 55.000 0.00 0.00 0.00 2.69
1450 1806 0.532115 GTACTCCCGCCGTTCCTAAA 59.468 55.000 0.00 0.00 0.00 1.85
1451 1807 1.137675 GTACTCCCGCCGTTCCTAAAT 59.862 52.381 0.00 0.00 0.00 1.40
1452 1808 1.488390 ACTCCCGCCGTTCCTAAATA 58.512 50.000 0.00 0.00 0.00 1.40
1453 1809 1.137675 ACTCCCGCCGTTCCTAAATAC 59.862 52.381 0.00 0.00 0.00 1.89
1454 1810 1.137479 CTCCCGCCGTTCCTAAATACA 59.863 52.381 0.00 0.00 0.00 2.29
1455 1811 1.554160 TCCCGCCGTTCCTAAATACAA 59.446 47.619 0.00 0.00 0.00 2.41
1456 1812 2.171027 TCCCGCCGTTCCTAAATACAAT 59.829 45.455 0.00 0.00 0.00 2.71
1457 1813 2.946990 CCCGCCGTTCCTAAATACAATT 59.053 45.455 0.00 0.00 0.00 2.32
1458 1814 3.002965 CCCGCCGTTCCTAAATACAATTC 59.997 47.826 0.00 0.00 0.00 2.17
1459 1815 3.875134 CCGCCGTTCCTAAATACAATTCT 59.125 43.478 0.00 0.00 0.00 2.40
1460 1816 4.334481 CCGCCGTTCCTAAATACAATTCTT 59.666 41.667 0.00 0.00 0.00 2.52
1461 1817 5.163693 CCGCCGTTCCTAAATACAATTCTTT 60.164 40.000 0.00 0.00 0.00 2.52
1462 1818 5.737290 CGCCGTTCCTAAATACAATTCTTTG 59.263 40.000 0.00 0.00 38.86 2.77
1537 1893 9.981460 AATGTAGATTCATTCCTTTTACTTCCT 57.019 29.630 0.00 0.00 33.43 3.36
1545 1901 9.886132 TTCATTCCTTTTACTTCCTATGTAGTC 57.114 33.333 0.00 0.00 0.00 2.59
1546 1902 8.483758 TCATTCCTTTTACTTCCTATGTAGTCC 58.516 37.037 0.00 0.00 0.00 3.85
1547 1903 7.801893 TTCCTTTTACTTCCTATGTAGTCCA 57.198 36.000 0.00 0.00 0.00 4.02
1548 1904 7.989947 TCCTTTTACTTCCTATGTAGTCCAT 57.010 36.000 0.00 0.00 37.58 3.41
1549 1905 8.019656 TCCTTTTACTTCCTATGTAGTCCATC 57.980 38.462 0.00 0.00 34.86 3.51
1550 1906 7.844779 TCCTTTTACTTCCTATGTAGTCCATCT 59.155 37.037 0.00 0.00 34.86 2.90
1551 1907 9.144298 CCTTTTACTTCCTATGTAGTCCATCTA 57.856 37.037 0.00 0.00 34.86 1.98
1553 1909 9.710818 TTTTACTTCCTATGTAGTCCATCTAGT 57.289 33.333 0.00 0.00 34.86 2.57
1554 1910 8.693120 TTACTTCCTATGTAGTCCATCTAGTG 57.307 38.462 0.00 0.00 34.86 2.74
1571 1927 8.006298 CATCTAGTGGAATCTCTACAAAGACT 57.994 38.462 0.00 0.00 29.78 3.24
1572 1928 8.474025 CATCTAGTGGAATCTCTACAAAGACTT 58.526 37.037 0.00 0.00 29.78 3.01
1573 1929 9.702253 ATCTAGTGGAATCTCTACAAAGACTTA 57.298 33.333 0.00 0.00 29.78 2.24
1574 1930 9.702253 TCTAGTGGAATCTCTACAAAGACTTAT 57.298 33.333 0.00 0.00 29.47 1.73
1588 1944 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
1589 1945 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
1590 1946 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
1604 1960 2.307768 CGGAGGGAGTACTTAGCATGA 58.692 52.381 0.00 0.00 0.00 3.07
1606 1962 2.365941 GGAGGGAGTACTTAGCATGACC 59.634 54.545 0.00 0.00 0.00 4.02
1682 2055 9.008965 TGATTATATTTACAACGGATGGATTGG 57.991 33.333 0.00 0.00 0.00 3.16
1685 2058 0.916086 TACAACGGATGGATTGGCCT 59.084 50.000 3.32 0.00 37.63 5.19
1708 2081 5.281727 TGTCACATTTATAGCTGCTAGACG 58.718 41.667 15.41 4.54 0.00 4.18
1709 2082 5.163550 TGTCACATTTATAGCTGCTAGACGT 60.164 40.000 15.41 5.14 0.00 4.34
1716 2089 0.679505 AGCTGCTAGACGTTTGTCCA 59.320 50.000 0.00 0.00 46.74 4.02
1723 2096 3.059800 GCTAGACGTTTGTCCAGTCAAAC 60.060 47.826 9.53 9.53 46.74 2.93
1774 2148 4.288626 ACCAGACCTGCCTATTTAAAGACA 59.711 41.667 0.00 0.00 0.00 3.41
1778 2152 2.952310 CCTGCCTATTTAAAGACAGGGC 59.048 50.000 15.63 10.98 40.80 5.19
1779 2153 3.620488 CTGCCTATTTAAAGACAGGGCA 58.380 45.455 12.18 12.18 44.55 5.36
1780 2154 3.620488 TGCCTATTTAAAGACAGGGCAG 58.380 45.455 9.50 0.00 42.38 4.85
1781 2155 3.010138 TGCCTATTTAAAGACAGGGCAGT 59.990 43.478 9.50 0.00 42.38 4.40
1782 2156 4.017126 GCCTATTTAAAGACAGGGCAGTT 58.983 43.478 12.69 0.00 38.16 3.16
1783 2157 4.096532 GCCTATTTAAAGACAGGGCAGTTC 59.903 45.833 12.69 0.00 38.16 3.01
1792 2166 0.396435 CAGGGCAGTTCACAGTACCA 59.604 55.000 0.00 0.00 0.00 3.25
1817 2195 5.805728 AGGGAACTTATGACTTGGTACTTG 58.194 41.667 0.00 0.00 37.44 3.16
1818 2196 4.395231 GGGAACTTATGACTTGGTACTTGC 59.605 45.833 0.00 0.00 0.00 4.01
1819 2197 5.001232 GGAACTTATGACTTGGTACTTGCA 58.999 41.667 0.00 0.00 0.00 4.08
1820 2198 5.122396 GGAACTTATGACTTGGTACTTGCAG 59.878 44.000 0.00 0.00 0.00 4.41
1821 2199 5.228945 ACTTATGACTTGGTACTTGCAGT 57.771 39.130 0.00 0.00 0.00 4.40
1822 2200 5.621193 ACTTATGACTTGGTACTTGCAGTT 58.379 37.500 0.00 0.00 0.00 3.16
1823 2201 6.765403 ACTTATGACTTGGTACTTGCAGTTA 58.235 36.000 0.00 0.00 0.00 2.24
1824 2202 7.221450 ACTTATGACTTGGTACTTGCAGTTAA 58.779 34.615 0.00 0.00 0.00 2.01
1825 2203 7.387948 ACTTATGACTTGGTACTTGCAGTTAAG 59.612 37.037 0.00 0.00 0.00 1.85
1826 2204 5.284861 TGACTTGGTACTTGCAGTTAAGA 57.715 39.130 0.00 0.00 0.00 2.10
1827 2205 5.676552 TGACTTGGTACTTGCAGTTAAGAA 58.323 37.500 0.00 0.00 0.00 2.52
1828 2206 6.296026 TGACTTGGTACTTGCAGTTAAGAAT 58.704 36.000 0.00 0.00 0.00 2.40
1829 2207 7.446769 TGACTTGGTACTTGCAGTTAAGAATA 58.553 34.615 0.00 0.00 0.00 1.75
1830 2208 7.602644 TGACTTGGTACTTGCAGTTAAGAATAG 59.397 37.037 0.00 0.00 0.00 1.73
1831 2209 7.450903 ACTTGGTACTTGCAGTTAAGAATAGT 58.549 34.615 0.00 0.00 0.00 2.12
1832 2210 7.937394 ACTTGGTACTTGCAGTTAAGAATAGTT 59.063 33.333 0.00 0.00 0.00 2.24
1833 2211 8.685838 TTGGTACTTGCAGTTAAGAATAGTTT 57.314 30.769 0.00 0.00 0.00 2.66
1834 2212 8.685838 TGGTACTTGCAGTTAAGAATAGTTTT 57.314 30.769 0.00 0.00 0.00 2.43
1835 2213 9.127277 TGGTACTTGCAGTTAAGAATAGTTTTT 57.873 29.630 0.00 0.00 0.00 1.94
1858 2236 5.424121 TTTCTTCAGAACTGCAGTTAAGC 57.576 39.130 31.20 19.08 38.56 3.09
1865 2243 4.331168 CAGAACTGCAGTTAAGCATAGGTC 59.669 45.833 31.20 15.14 44.68 3.85
1871 2249 2.930040 CAGTTAAGCATAGGTCACACCG 59.070 50.000 0.00 0.00 44.90 4.94
1889 2267 1.726791 CCGTGACATGTGAACAGTAGC 59.273 52.381 1.15 0.00 0.00 3.58
1890 2268 1.726791 CGTGACATGTGAACAGTAGCC 59.273 52.381 1.15 0.00 0.00 3.93
1891 2269 2.766313 GTGACATGTGAACAGTAGCCA 58.234 47.619 1.15 0.00 0.00 4.75
1892 2270 2.738846 GTGACATGTGAACAGTAGCCAG 59.261 50.000 1.15 0.00 0.00 4.85
1893 2271 1.734465 GACATGTGAACAGTAGCCAGC 59.266 52.381 1.15 0.00 0.00 4.85
1894 2272 0.723414 CATGTGAACAGTAGCCAGCG 59.277 55.000 0.00 0.00 0.00 5.18
1895 2273 1.021390 ATGTGAACAGTAGCCAGCGC 61.021 55.000 0.00 0.00 0.00 5.92
1897 2275 0.108804 GTGAACAGTAGCCAGCGCTA 60.109 55.000 10.99 0.00 46.08 4.26
1903 2281 2.682136 TAGCCAGCGCTACACCCA 60.682 61.111 10.99 0.00 46.08 4.51
1904 2282 3.014085 TAGCCAGCGCTACACCCAC 62.014 63.158 10.99 0.00 46.08 4.61
1905 2283 4.394712 GCCAGCGCTACACCCACT 62.395 66.667 10.99 0.00 0.00 4.00
1906 2284 3.014085 GCCAGCGCTACACCCACTA 62.014 63.158 10.99 0.00 0.00 2.74
1907 2285 1.141881 CCAGCGCTACACCCACTAG 59.858 63.158 10.99 0.00 0.00 2.57
1908 2286 1.605058 CCAGCGCTACACCCACTAGT 61.605 60.000 10.99 0.00 0.00 2.57
1909 2287 0.246635 CAGCGCTACACCCACTAGTT 59.753 55.000 10.99 0.00 0.00 2.24
1910 2288 0.974383 AGCGCTACACCCACTAGTTT 59.026 50.000 8.99 0.00 0.00 2.66
1911 2289 1.346722 AGCGCTACACCCACTAGTTTT 59.653 47.619 8.99 0.00 0.00 2.43
1912 2290 2.148768 GCGCTACACCCACTAGTTTTT 58.851 47.619 0.00 0.00 0.00 1.94
1951 2329 5.734855 CCCACTAGGTTATGTTTCAATCG 57.265 43.478 0.00 0.00 0.00 3.34
1952 2330 4.574828 CCCACTAGGTTATGTTTCAATCGG 59.425 45.833 0.00 0.00 0.00 4.18
1995 2373 2.038863 TAGGAACAGGAAAGCCCAGA 57.961 50.000 0.00 0.00 37.41 3.86
2022 2400 2.130821 TTAATGGAGGCCCGTGTGCA 62.131 55.000 0.00 0.00 34.29 4.57
2040 2418 5.643777 GTGTGCATACAGATGTTCCTAGTTT 59.356 40.000 8.93 0.00 37.52 2.66
2140 2521 0.177141 ATGCAAATGCTGATGCCCAC 59.823 50.000 6.97 0.00 41.87 4.61
2151 2532 2.098614 TGATGCCCACATTATTGCGTT 58.901 42.857 0.00 0.00 36.35 4.84
2263 2644 8.443953 TTGCTGCCAAATAACTTTGTTATTTT 57.556 26.923 19.54 8.09 40.15 1.82
2264 2645 7.859598 TGCTGCCAAATAACTTTGTTATTTTG 58.140 30.769 19.54 17.73 40.15 2.44
2311 2692 3.979501 ATAGGGCCAAACCATCTTCAT 57.020 42.857 6.18 0.00 42.05 2.57
2364 2745 1.604278 GCCGTGAAGGATAAATCAGCC 59.396 52.381 0.00 0.00 45.00 4.85
2373 2754 2.959030 GGATAAATCAGCCAAACCTCCC 59.041 50.000 0.00 0.00 30.82 4.30
2460 2841 2.432628 GTGTCAGGGGTTCGCTCG 60.433 66.667 0.00 0.00 0.00 5.03
2467 2848 3.839432 GGGTTCGCTCGAGGAGGG 61.839 72.222 15.58 3.54 42.76 4.30
2655 3036 4.471904 TGAGTCAGAATGCGAGGTAAAT 57.528 40.909 0.00 0.00 34.76 1.40
2681 3062 7.255491 TCAATTGATCATCTGTGATTAGTGC 57.745 36.000 3.38 0.00 44.96 4.40
2708 3089 8.348507 AGACTGTTCAGTTTCTTTCATTGAATC 58.651 33.333 6.91 0.00 31.28 2.52
2779 3162 2.789409 ACTCAAGACTTATGTGGCCC 57.211 50.000 0.00 0.00 0.00 5.80
2821 3204 2.685380 AGGAGCCGGTGAAGGAGG 60.685 66.667 1.90 0.00 0.00 4.30
2883 3266 2.638480 AGATCTCTCTGGACTCCTCG 57.362 55.000 0.00 0.00 0.00 4.63
2997 3380 4.216257 GCAACTCAGAGTAAAGATGGCAAA 59.784 41.667 2.64 0.00 0.00 3.68
3100 3483 4.953940 AAAGAAGCTGCCAAAAATACCA 57.046 36.364 0.00 0.00 0.00 3.25
3102 3485 6.603940 AAAGAAGCTGCCAAAAATACCATA 57.396 33.333 0.00 0.00 0.00 2.74
3144 3527 0.394080 AGGAGCAGCAAGAGGATTGC 60.394 55.000 4.45 4.45 45.22 3.56
3153 3536 2.731572 CAAGAGGATTGCAATGGAGGT 58.268 47.619 18.59 0.00 0.00 3.85
3159 3542 3.461085 AGGATTGCAATGGAGGTAGTGAT 59.539 43.478 18.59 0.00 0.00 3.06
3167 3550 1.899814 TGGAGGTAGTGATGTTTCGCT 59.100 47.619 0.00 0.00 44.72 4.93
3174 3557 2.783135 AGTGATGTTTCGCTGGTTGAT 58.217 42.857 0.00 0.00 41.15 2.57
3202 3585 3.133901 TCAAGAATCTGGTAAGCGCCATA 59.866 43.478 2.29 0.00 37.96 2.74
3221 3604 5.119694 CCATAGCTTTCCTGAGTTCCTAAC 58.880 45.833 0.00 0.00 0.00 2.34
3222 3605 3.320673 AGCTTTCCTGAGTTCCTAACG 57.679 47.619 0.00 0.00 36.23 3.18
3235 3619 7.486647 TGAGTTCCTAACGTAAATATCACCTC 58.513 38.462 0.00 0.00 36.23 3.85
3244 3628 5.581085 ACGTAAATATCACCTCTTTCTGCAC 59.419 40.000 0.00 0.00 0.00 4.57
3249 3633 7.617041 AATATCACCTCTTTCTGCACTTTAC 57.383 36.000 0.00 0.00 0.00 2.01
3250 3634 4.689612 TCACCTCTTTCTGCACTTTACT 57.310 40.909 0.00 0.00 0.00 2.24
3251 3635 5.801531 TCACCTCTTTCTGCACTTTACTA 57.198 39.130 0.00 0.00 0.00 1.82
3252 3636 6.360370 TCACCTCTTTCTGCACTTTACTAT 57.640 37.500 0.00 0.00 0.00 2.12
3253 3637 7.476540 TCACCTCTTTCTGCACTTTACTATA 57.523 36.000 0.00 0.00 0.00 1.31
3254 3638 7.548097 TCACCTCTTTCTGCACTTTACTATAG 58.452 38.462 0.00 0.00 0.00 1.31
3257 3641 6.407525 CCTCTTTCTGCACTTTACTATAGGCT 60.408 42.308 4.43 0.00 0.00 4.58
3266 3650 7.012327 TGCACTTTACTATAGGCTTTGCTAATG 59.988 37.037 4.43 0.00 0.00 1.90
3290 3676 7.035004 TGGCAAAACTATATTTCAGTTGATGC 58.965 34.615 14.04 14.04 42.77 3.91
3342 3736 5.642063 GGAGAACATGGTAAGAATTTCGACA 59.358 40.000 0.00 0.00 0.00 4.35
3401 3808 4.035208 CAGGTTACTGTTTCGTTCTTGCTT 59.965 41.667 0.00 0.00 39.92 3.91
3402 3809 5.235616 CAGGTTACTGTTTCGTTCTTGCTTA 59.764 40.000 0.00 0.00 39.92 3.09
3403 3810 5.818857 AGGTTACTGTTTCGTTCTTGCTTAA 59.181 36.000 0.00 0.00 0.00 1.85
3404 3811 6.485648 AGGTTACTGTTTCGTTCTTGCTTAAT 59.514 34.615 0.00 0.00 0.00 1.40
3408 3815 9.872757 TTACTGTTTCGTTCTTGCTTAATTAAG 57.127 29.630 19.08 19.08 36.40 1.85
3576 3983 6.073167 TGTTTTCTTTCGCCGTTGTTGATATA 60.073 34.615 0.00 0.00 0.00 0.86
3630 4037 4.457810 CGCAACATGTCTTTAAGAGTGTG 58.542 43.478 11.87 6.65 28.50 3.82
3783 4191 6.213397 TCCCTGATCTTTGTGTTCTTCTCATA 59.787 38.462 0.00 0.00 0.00 2.15
3790 4198 7.556844 TCTTTGTGTTCTTCTCATATACTCCC 58.443 38.462 0.00 0.00 0.00 4.30
3796 4204 4.653868 TCTTCTCATATACTCCCTCCGTC 58.346 47.826 0.00 0.00 0.00 4.79
3798 4206 2.714793 TCTCATATACTCCCTCCGTCCA 59.285 50.000 0.00 0.00 0.00 4.02
3799 4207 3.085533 CTCATATACTCCCTCCGTCCAG 58.914 54.545 0.00 0.00 0.00 3.86
3800 4208 2.714793 TCATATACTCCCTCCGTCCAGA 59.285 50.000 0.00 0.00 0.00 3.86
3808 4216 2.500098 TCCCTCCGTCCAGAATTACTTG 59.500 50.000 0.00 0.00 0.00 3.16
3809 4217 2.236395 CCCTCCGTCCAGAATTACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
3810 4218 3.522553 CCTCCGTCCAGAATTACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
3811 4219 3.179830 CTCCGTCCAGAATTACTTGTCG 58.820 50.000 0.00 0.00 0.00 4.35
3812 4220 2.559668 TCCGTCCAGAATTACTTGTCGT 59.440 45.455 0.00 0.00 0.00 4.34
3813 4221 3.758023 TCCGTCCAGAATTACTTGTCGTA 59.242 43.478 0.00 0.00 0.00 3.43
3817 4225 6.073657 CCGTCCAGAATTACTTGTCGTAAAAA 60.074 38.462 0.00 0.00 41.17 1.94
3818 4226 7.360607 CCGTCCAGAATTACTTGTCGTAAAAAT 60.361 37.037 0.00 0.00 41.17 1.82
3819 4227 7.477422 CGTCCAGAATTACTTGTCGTAAAAATG 59.523 37.037 0.00 0.00 41.17 2.32
3821 4229 7.662258 TCCAGAATTACTTGTCGTAAAAATGGA 59.338 33.333 9.36 9.36 41.17 3.41
3822 4230 8.458843 CCAGAATTACTTGTCGTAAAAATGGAT 58.541 33.333 0.00 0.00 41.17 3.41
3830 4238 9.226606 ACTTGTCGTAAAAATGGATAGAAATGA 57.773 29.630 0.00 0.00 0.00 2.57
3865 4273 9.717942 AGAACTAAAATGCATCTAGATACATCC 57.282 33.333 17.09 3.81 0.00 3.51
3866 4274 8.539770 AACTAAAATGCATCTAGATACATCCG 57.460 34.615 17.09 9.44 0.00 4.18
3867 4275 7.671302 ACTAAAATGCATCTAGATACATCCGT 58.329 34.615 17.09 9.94 0.00 4.69
3868 4276 8.150945 ACTAAAATGCATCTAGATACATCCGTT 58.849 33.333 17.09 13.72 0.00 4.44
3869 4277 7.426929 AAAATGCATCTAGATACATCCGTTC 57.573 36.000 17.09 0.00 0.00 3.95
3870 4278 4.521130 TGCATCTAGATACATCCGTTCC 57.479 45.455 4.54 0.00 0.00 3.62
3871 4279 4.152647 TGCATCTAGATACATCCGTTCCT 58.847 43.478 4.54 0.00 0.00 3.36
3872 4280 4.218635 TGCATCTAGATACATCCGTTCCTC 59.781 45.833 4.54 0.00 0.00 3.71
3876 4284 1.955080 AGATACATCCGTTCCTCCGAC 59.045 52.381 0.00 0.00 0.00 4.79
3877 4285 1.679680 GATACATCCGTTCCTCCGACA 59.320 52.381 0.00 0.00 0.00 4.35
3882 4290 1.843368 TCCGTTCCTCCGACAAGTAT 58.157 50.000 0.00 0.00 0.00 2.12
3884 4292 2.564062 TCCGTTCCTCCGACAAGTATTT 59.436 45.455 0.00 0.00 0.00 1.40
3885 4293 2.928116 CCGTTCCTCCGACAAGTATTTC 59.072 50.000 0.00 0.00 0.00 2.17
3886 4294 3.368116 CCGTTCCTCCGACAAGTATTTCT 60.368 47.826 0.00 0.00 0.00 2.52
3887 4295 4.142315 CCGTTCCTCCGACAAGTATTTCTA 60.142 45.833 0.00 0.00 0.00 2.10
3888 4296 5.035443 CGTTCCTCCGACAAGTATTTCTAG 58.965 45.833 0.00 0.00 0.00 2.43
3890 4298 6.459848 CGTTCCTCCGACAAGTATTTCTAGAT 60.460 42.308 0.00 0.00 0.00 1.98
3915 4323 7.851228 TGGAGGGAGTATATATTATGCACAAG 58.149 38.462 0.00 0.00 0.00 3.16
3916 4324 7.457852 TGGAGGGAGTATATATTATGCACAAGT 59.542 37.037 0.00 0.00 0.00 3.16
3988 4405 4.627035 TCAATTCTATTCACGTGTCTGCAG 59.373 41.667 16.51 7.63 0.00 4.41
4085 4508 4.797743 TCTATCACAGTATCCAGAGCACT 58.202 43.478 0.00 0.00 0.00 4.40
4103 4526 3.415212 CACTGAGGTCACATGGATGTTT 58.585 45.455 0.00 0.00 39.39 2.83
4105 4528 2.161855 TGAGGTCACATGGATGTTTGC 58.838 47.619 0.00 0.00 39.39 3.68
4135 4558 5.941948 AACTACAACTTGTAAGCCACATC 57.058 39.130 3.26 0.00 36.90 3.06
4187 4611 2.558359 CTGGTTTTCCCATGGTCAAGTC 59.442 50.000 11.73 0.00 44.15 3.01
4202 4626 4.631813 GGTCAAGTCGCTTTTATCATCTGT 59.368 41.667 0.00 0.00 0.00 3.41
4204 4628 6.237861 GGTCAAGTCGCTTTTATCATCTGTAC 60.238 42.308 0.00 0.00 0.00 2.90
4234 4658 4.092675 GCTTGTCTGCATTCTCTGTTCTAC 59.907 45.833 0.00 0.00 0.00 2.59
4236 4660 4.560128 TGTCTGCATTCTCTGTTCTACAC 58.440 43.478 0.00 0.00 0.00 2.90
4317 4741 3.380320 TGATGCTGAAAAGATGCCATCAG 59.620 43.478 7.56 0.00 41.69 2.90
4371 4795 2.161410 GCAATTGGTTGTAGCGTCATGA 59.839 45.455 7.72 0.00 37.65 3.07
4435 4859 7.292356 TGGAAGGTACATGATAGGAACACATAT 59.708 37.037 0.00 0.00 0.00 1.78
4436 4860 8.812972 GGAAGGTACATGATAGGAACACATATA 58.187 37.037 0.00 0.00 0.00 0.86
4437 4861 9.640963 GAAGGTACATGATAGGAACACATATAC 57.359 37.037 0.00 0.00 0.00 1.47
4438 4862 8.958060 AGGTACATGATAGGAACACATATACT 57.042 34.615 0.00 0.00 28.73 2.12
4439 4863 9.026121 AGGTACATGATAGGAACACATATACTC 57.974 37.037 0.00 0.00 28.73 2.59
4440 4864 8.251721 GGTACATGATAGGAACACATATACTCC 58.748 40.741 0.00 0.00 28.73 3.85
4441 4865 7.246171 ACATGATAGGAACACATATACTCCC 57.754 40.000 0.00 0.00 0.00 4.30
4442 4866 7.019388 ACATGATAGGAACACATATACTCCCT 58.981 38.462 0.00 0.00 0.00 4.20
4443 4867 7.179338 ACATGATAGGAACACATATACTCCCTC 59.821 40.741 0.00 0.00 0.00 4.30
4444 4868 6.017192 TGATAGGAACACATATACTCCCTCC 58.983 44.000 0.00 0.00 0.00 4.30
4445 4869 3.231818 AGGAACACATATACTCCCTCCG 58.768 50.000 0.00 0.00 0.00 4.63
4446 4870 2.963782 GGAACACATATACTCCCTCCGT 59.036 50.000 0.00 0.00 0.00 4.69
4447 4871 3.387050 GGAACACATATACTCCCTCCGTT 59.613 47.826 0.00 0.00 0.00 4.44
4448 4872 4.501058 GGAACACATATACTCCCTCCGTTC 60.501 50.000 0.00 0.00 0.00 3.95
4449 4873 2.963782 ACACATATACTCCCTCCGTTCC 59.036 50.000 0.00 0.00 0.00 3.62
4450 4874 3.231818 CACATATACTCCCTCCGTTCCT 58.768 50.000 0.00 0.00 0.00 3.36
4451 4875 4.141088 ACACATATACTCCCTCCGTTCCTA 60.141 45.833 0.00 0.00 0.00 2.94
4452 4876 4.831155 CACATATACTCCCTCCGTTCCTAA 59.169 45.833 0.00 0.00 0.00 2.69
4453 4877 5.303589 CACATATACTCCCTCCGTTCCTAAA 59.696 44.000 0.00 0.00 0.00 1.85
4454 4878 6.014499 CACATATACTCCCTCCGTTCCTAAAT 60.014 42.308 0.00 0.00 0.00 1.40
4455 4879 7.177921 CACATATACTCCCTCCGTTCCTAAATA 59.822 40.741 0.00 0.00 0.00 1.40
4456 4880 7.178097 ACATATACTCCCTCCGTTCCTAAATAC 59.822 40.741 0.00 0.00 0.00 1.89
4457 4881 3.991683 ACTCCCTCCGTTCCTAAATACT 58.008 45.455 0.00 0.00 0.00 2.12
4458 4882 3.959449 ACTCCCTCCGTTCCTAAATACTC 59.041 47.826 0.00 0.00 0.00 2.59
4459 4883 4.216708 CTCCCTCCGTTCCTAAATACTCT 58.783 47.826 0.00 0.00 0.00 3.24
4460 4884 4.213513 TCCCTCCGTTCCTAAATACTCTC 58.786 47.826 0.00 0.00 0.00 3.20
4461 4885 4.079327 TCCCTCCGTTCCTAAATACTCTCT 60.079 45.833 0.00 0.00 0.00 3.10
4462 4886 4.278919 CCCTCCGTTCCTAAATACTCTCTC 59.721 50.000 0.00 0.00 0.00 3.20
4463 4887 4.278919 CCTCCGTTCCTAAATACTCTCTCC 59.721 50.000 0.00 0.00 0.00 3.71
4464 4888 3.881688 TCCGTTCCTAAATACTCTCTCCG 59.118 47.826 0.00 0.00 0.00 4.63
4465 4889 3.631227 CCGTTCCTAAATACTCTCTCCGT 59.369 47.826 0.00 0.00 0.00 4.69
4466 4890 4.261114 CCGTTCCTAAATACTCTCTCCGTC 60.261 50.000 0.00 0.00 0.00 4.79
4467 4891 4.575645 CGTTCCTAAATACTCTCTCCGTCT 59.424 45.833 0.00 0.00 0.00 4.18
4468 4892 5.277442 CGTTCCTAAATACTCTCTCCGTCTC 60.277 48.000 0.00 0.00 0.00 3.36
4469 4893 5.369409 TCCTAAATACTCTCTCCGTCTCA 57.631 43.478 0.00 0.00 0.00 3.27
4470 4894 5.752650 TCCTAAATACTCTCTCCGTCTCAA 58.247 41.667 0.00 0.00 0.00 3.02
4471 4895 6.185511 TCCTAAATACTCTCTCCGTCTCAAA 58.814 40.000 0.00 0.00 0.00 2.69
4472 4896 6.662234 TCCTAAATACTCTCTCCGTCTCAAAA 59.338 38.462 0.00 0.00 0.00 2.44
4473 4897 7.342284 TCCTAAATACTCTCTCCGTCTCAAAAT 59.658 37.037 0.00 0.00 0.00 1.82
4474 4898 8.630917 CCTAAATACTCTCTCCGTCTCAAAATA 58.369 37.037 0.00 0.00 0.00 1.40
4476 4900 8.934507 AAATACTCTCTCCGTCTCAAAATAAG 57.065 34.615 0.00 0.00 0.00 1.73
4477 4901 5.986501 ACTCTCTCCGTCTCAAAATAAGT 57.013 39.130 0.00 0.00 0.00 2.24
4478 4902 5.715070 ACTCTCTCCGTCTCAAAATAAGTG 58.285 41.667 0.00 0.00 0.00 3.16
4479 4903 5.244178 ACTCTCTCCGTCTCAAAATAAGTGT 59.756 40.000 0.00 0.00 0.00 3.55
4480 4904 5.710984 TCTCTCCGTCTCAAAATAAGTGTC 58.289 41.667 0.00 0.00 0.00 3.67
4481 4905 5.477291 TCTCTCCGTCTCAAAATAAGTGTCT 59.523 40.000 0.00 0.00 0.00 3.41
4482 4906 5.710984 TCTCCGTCTCAAAATAAGTGTCTC 58.289 41.667 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 7.117523 TCGTAATTTGCTTTCCAAAATTCATGG 59.882 33.333 4.25 4.25 45.80 3.66
70 71 9.715123 CTGTGTACATTATTCATATTCGCAAAA 57.285 29.630 0.00 0.00 0.00 2.44
74 75 9.716507 AAAACTGTGTACATTATTCATATTCGC 57.283 29.630 0.00 0.00 0.00 4.70
188 195 4.351054 AGGTTTGAGGGCAGCCGG 62.351 66.667 5.00 0.00 0.00 6.13
191 198 0.315251 GTTTCAGGTTTGAGGGCAGC 59.685 55.000 0.00 0.00 34.15 5.25
192 199 1.338020 GTGTTTCAGGTTTGAGGGCAG 59.662 52.381 0.00 0.00 34.15 4.85
205 212 2.158871 AGAGCGGGTAGTTTGTGTTTCA 60.159 45.455 0.00 0.00 0.00 2.69
220 227 2.417516 CCCATGTACGGAGAGCGG 59.582 66.667 0.00 0.00 0.00 5.52
245 252 2.814336 GCATATCCTTGGTTCGGGATTC 59.186 50.000 0.00 0.00 41.86 2.52
246 253 2.489073 GGCATATCCTTGGTTCGGGATT 60.489 50.000 0.00 0.00 41.86 3.01
256 263 0.475475 TCTGGCCTGGCATATCCTTG 59.525 55.000 22.05 0.96 35.26 3.61
333 348 1.756408 TTGGTCACGCGGGGTTAAGA 61.756 55.000 9.32 0.00 0.00 2.10
347 362 3.256960 TGGGCAGGGAGGTTGGTC 61.257 66.667 0.00 0.00 0.00 4.02
506 545 2.281276 GCGTTTCGGGTTGAGGGT 60.281 61.111 0.00 0.00 0.00 4.34
806 1118 0.037697 ATAACGTTGGCTCGCACAGA 60.038 50.000 11.99 0.00 0.00 3.41
813 1125 5.057149 ACAATCCTATGATAACGTTGGCTC 58.943 41.667 11.99 5.76 0.00 4.70
814 1126 5.036117 ACAATCCTATGATAACGTTGGCT 57.964 39.130 11.99 0.00 0.00 4.75
873 1186 0.116541 TCGAGAGAGGGGAGGGTTTT 59.883 55.000 0.00 0.00 34.84 2.43
944 1283 0.178929 AACGGACCTCTCCCAAGTCT 60.179 55.000 0.00 0.00 31.93 3.24
946 1285 1.533469 CGAACGGACCTCTCCCAAGT 61.533 60.000 0.00 0.00 31.93 3.16
947 1286 1.215647 CGAACGGACCTCTCCCAAG 59.784 63.158 0.00 0.00 31.93 3.61
948 1287 0.613853 ATCGAACGGACCTCTCCCAA 60.614 55.000 0.00 0.00 31.93 4.12
949 1288 0.613853 AATCGAACGGACCTCTCCCA 60.614 55.000 0.00 0.00 31.93 4.37
950 1289 0.102663 GAATCGAACGGACCTCTCCC 59.897 60.000 0.00 0.00 31.93 4.30
951 1290 0.102663 GGAATCGAACGGACCTCTCC 59.897 60.000 0.00 0.00 0.00 3.71
952 1291 1.065851 GAGGAATCGAACGGACCTCTC 59.934 57.143 18.61 8.01 42.41 3.20
953 1292 1.104630 GAGGAATCGAACGGACCTCT 58.895 55.000 18.61 4.10 42.41 3.69
954 1293 0.248539 CGAGGAATCGAACGGACCTC 60.249 60.000 17.18 17.18 42.30 3.85
955 1294 1.807886 CGAGGAATCGAACGGACCT 59.192 57.895 0.00 0.00 34.64 3.85
956 1295 1.877165 GCGAGGAATCGAACGGACC 60.877 63.158 1.17 0.00 34.64 4.46
957 1296 1.877165 GGCGAGGAATCGAACGGAC 60.877 63.158 1.17 0.00 34.64 4.79
962 1301 1.987855 ACCCAGGCGAGGAATCGAA 60.988 57.895 1.17 0.00 34.64 3.71
980 1319 2.133742 GAACTCGAACGACGGACCCA 62.134 60.000 0.00 0.00 42.82 4.51
1006 1345 3.209812 CGACTGATCGCCCGAGGA 61.210 66.667 0.00 0.00 42.43 3.71
1093 1432 2.100879 AACCCACAGACCACTCGCTC 62.101 60.000 0.00 0.00 0.00 5.03
1094 1433 2.100879 GAACCCACAGACCACTCGCT 62.101 60.000 0.00 0.00 0.00 4.93
1095 1434 1.668151 GAACCCACAGACCACTCGC 60.668 63.158 0.00 0.00 0.00 5.03
1096 1435 0.319900 CAGAACCCACAGACCACTCG 60.320 60.000 0.00 0.00 0.00 4.18
1105 1444 2.642171 ACCCTAGATCAGAACCCACA 57.358 50.000 0.00 0.00 0.00 4.17
1269 1613 1.007963 AGAACGGGAGGTAAGATGGGA 59.992 52.381 0.00 0.00 0.00 4.37
1270 1614 1.413077 GAGAACGGGAGGTAAGATGGG 59.587 57.143 0.00 0.00 0.00 4.00
1316 1660 6.107901 AGGAATCACATATCAAGAGTAGGC 57.892 41.667 0.00 0.00 0.00 3.93
1365 1716 9.880157 TGAAACAAAAAGAACTAGTACTGTACT 57.120 29.630 22.72 22.72 42.68 2.73
1397 1749 7.201956 GCTTCCATTCCTCTCTGAGAGTATTTA 60.202 40.741 27.85 12.11 40.72 1.40
1417 1773 2.038557 GGGAGTACTTGTTCTGCTTCCA 59.961 50.000 0.00 0.00 0.00 3.53
1419 1775 2.338500 CGGGAGTACTTGTTCTGCTTC 58.662 52.381 0.00 0.00 0.00 3.86
1426 1782 0.320160 GAACGGCGGGAGTACTTGTT 60.320 55.000 13.24 0.00 0.00 2.83
1431 1787 0.532115 TTTAGGAACGGCGGGAGTAC 59.468 55.000 13.24 0.00 0.00 2.73
1432 1788 1.488390 ATTTAGGAACGGCGGGAGTA 58.512 50.000 13.24 0.00 0.00 2.59
1433 1789 1.137675 GTATTTAGGAACGGCGGGAGT 59.862 52.381 13.24 0.00 0.00 3.85
1434 1790 1.137479 TGTATTTAGGAACGGCGGGAG 59.863 52.381 13.24 0.00 0.00 4.30
1435 1791 1.193323 TGTATTTAGGAACGGCGGGA 58.807 50.000 13.24 0.00 0.00 5.14
1436 1792 2.027003 TTGTATTTAGGAACGGCGGG 57.973 50.000 13.24 0.00 0.00 6.13
1437 1793 3.875134 AGAATTGTATTTAGGAACGGCGG 59.125 43.478 13.24 0.00 0.00 6.13
1438 1794 5.479716 AAGAATTGTATTTAGGAACGGCG 57.520 39.130 4.80 4.80 0.00 6.46
1511 1867 9.981460 AGGAAGTAAAAGGAATGAATCTACATT 57.019 29.630 0.00 0.00 42.19 2.71
1519 1875 9.886132 GACTACATAGGAAGTAAAAGGAATGAA 57.114 33.333 0.00 0.00 0.00 2.57
1520 1876 8.483758 GGACTACATAGGAAGTAAAAGGAATGA 58.516 37.037 0.00 0.00 0.00 2.57
1521 1877 8.265055 TGGACTACATAGGAAGTAAAAGGAATG 58.735 37.037 0.00 0.00 0.00 2.67
1522 1878 8.388656 TGGACTACATAGGAAGTAAAAGGAAT 57.611 34.615 0.00 0.00 0.00 3.01
1523 1879 7.801893 TGGACTACATAGGAAGTAAAAGGAA 57.198 36.000 0.00 0.00 0.00 3.36
1524 1880 7.844779 AGATGGACTACATAGGAAGTAAAAGGA 59.155 37.037 0.00 0.00 40.72 3.36
1525 1881 8.024145 AGATGGACTACATAGGAAGTAAAAGG 57.976 38.462 0.00 0.00 40.72 3.11
1527 1883 9.710818 ACTAGATGGACTACATAGGAAGTAAAA 57.289 33.333 0.00 0.00 40.72 1.52
1528 1884 9.132923 CACTAGATGGACTACATAGGAAGTAAA 57.867 37.037 0.00 0.00 40.72 2.01
1529 1885 8.693120 CACTAGATGGACTACATAGGAAGTAA 57.307 38.462 0.00 0.00 40.72 2.24
1546 1902 8.006298 AGTCTTTGTAGAGATTCCACTAGATG 57.994 38.462 0.00 0.00 0.00 2.90
1547 1903 8.602472 AAGTCTTTGTAGAGATTCCACTAGAT 57.398 34.615 0.00 0.00 0.00 1.98
1548 1904 9.702253 ATAAGTCTTTGTAGAGATTCCACTAGA 57.298 33.333 0.00 0.00 0.00 2.43
1563 1919 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
1564 1920 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
1565 1921 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
1566 1922 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
1567 1923 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
1568 1924 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
1569 1925 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
1570 1926 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
1571 1927 7.300658 AGTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
1572 1928 6.856757 AGTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
1573 1929 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1574 1930 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
1575 1931 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1576 1932 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1577 1933 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
1578 1934 3.686691 GCTAAGTACTCCCTCCGTTCCTA 60.687 52.174 0.00 0.00 0.00 2.94
1579 1935 2.949508 GCTAAGTACTCCCTCCGTTCCT 60.950 54.545 0.00 0.00 0.00 3.36
1580 1936 1.408340 GCTAAGTACTCCCTCCGTTCC 59.592 57.143 0.00 0.00 0.00 3.62
1581 1937 2.097825 TGCTAAGTACTCCCTCCGTTC 58.902 52.381 0.00 0.00 0.00 3.95
1582 1938 2.226962 TGCTAAGTACTCCCTCCGTT 57.773 50.000 0.00 0.00 0.00 4.44
1583 1939 2.032620 CATGCTAAGTACTCCCTCCGT 58.967 52.381 0.00 0.00 0.00 4.69
1584 1940 2.034812 GTCATGCTAAGTACTCCCTCCG 59.965 54.545 0.00 0.00 0.00 4.63
1585 1941 2.365941 GGTCATGCTAAGTACTCCCTCC 59.634 54.545 0.00 0.00 0.00 4.30
1586 1942 2.365941 GGGTCATGCTAAGTACTCCCTC 59.634 54.545 0.00 0.00 0.00 4.30
1587 1943 2.022918 AGGGTCATGCTAAGTACTCCCT 60.023 50.000 8.39 8.39 39.11 4.20
1588 1944 2.103263 CAGGGTCATGCTAAGTACTCCC 59.897 54.545 0.00 0.00 0.00 4.30
1589 1945 2.766828 ACAGGGTCATGCTAAGTACTCC 59.233 50.000 0.00 0.00 0.00 3.85
1590 1946 4.473477 AACAGGGTCATGCTAAGTACTC 57.527 45.455 0.00 0.00 0.00 2.59
1682 2055 3.209410 AGCAGCTATAAATGTGACAGGC 58.791 45.455 0.00 0.00 0.00 4.85
1685 2058 5.163550 ACGTCTAGCAGCTATAAATGTGACA 60.164 40.000 1.54 0.00 0.00 3.58
1709 2082 7.353414 TCCAAATATTGTTTGACTGGACAAA 57.647 32.000 7.38 0.00 39.03 2.83
1716 2089 6.839124 TGCAGATCCAAATATTGTTTGACT 57.161 33.333 7.38 2.21 0.00 3.41
1723 2096 7.537715 TGTACAGTTTGCAGATCCAAATATTG 58.462 34.615 0.00 3.92 37.09 1.90
1774 2148 1.136828 TTGGTACTGTGAACTGCCCT 58.863 50.000 0.00 0.00 0.00 5.19
1778 2152 3.485463 TCCCTTTGGTACTGTGAACTG 57.515 47.619 0.00 0.00 0.00 3.16
1779 2153 3.458487 AGTTCCCTTTGGTACTGTGAACT 59.542 43.478 0.00 0.00 40.43 3.01
1780 2154 3.816994 AGTTCCCTTTGGTACTGTGAAC 58.183 45.455 0.00 0.00 40.43 3.18
1781 2155 4.513406 AAGTTCCCTTTGGTACTGTGAA 57.487 40.909 0.00 0.00 41.01 3.18
1782 2156 5.308497 TCATAAGTTCCCTTTGGTACTGTGA 59.692 40.000 0.00 0.00 41.01 3.58
1783 2157 5.411669 GTCATAAGTTCCCTTTGGTACTGTG 59.588 44.000 0.00 0.00 41.01 3.66
1792 2166 6.449830 AGTACCAAGTCATAAGTTCCCTTT 57.550 37.500 0.00 0.00 31.89 3.11
1834 2212 6.127758 TGCTTAACTGCAGTTCTGAAGAAAAA 60.128 34.615 34.29 18.42 39.31 1.94
1835 2213 5.356751 TGCTTAACTGCAGTTCTGAAGAAAA 59.643 36.000 34.29 19.09 39.31 2.29
1836 2214 4.881273 TGCTTAACTGCAGTTCTGAAGAAA 59.119 37.500 34.29 19.79 39.31 2.52
1837 2215 4.450976 TGCTTAACTGCAGTTCTGAAGAA 58.549 39.130 34.29 23.44 39.31 2.52
1838 2216 4.071961 TGCTTAACTGCAGTTCTGAAGA 57.928 40.909 34.29 18.06 39.31 2.87
1839 2217 5.064452 CCTATGCTTAACTGCAGTTCTGAAG 59.936 44.000 34.29 29.39 46.71 3.02
1840 2218 4.937620 CCTATGCTTAACTGCAGTTCTGAA 59.062 41.667 34.29 22.36 46.71 3.02
1841 2219 4.020218 ACCTATGCTTAACTGCAGTTCTGA 60.020 41.667 34.29 20.02 46.71 3.27
1842 2220 4.256920 ACCTATGCTTAACTGCAGTTCTG 58.743 43.478 34.29 26.33 46.71 3.02
1843 2221 4.020218 TGACCTATGCTTAACTGCAGTTCT 60.020 41.667 34.29 15.93 46.71 3.01
1844 2222 4.093556 GTGACCTATGCTTAACTGCAGTTC 59.906 45.833 34.29 20.87 46.71 3.01
1845 2223 4.003648 GTGACCTATGCTTAACTGCAGTT 58.996 43.478 32.97 32.97 46.71 3.16
1846 2224 3.007940 TGTGACCTATGCTTAACTGCAGT 59.992 43.478 15.25 15.25 46.71 4.40
1847 2225 3.372206 GTGTGACCTATGCTTAACTGCAG 59.628 47.826 13.48 13.48 46.71 4.41
1848 2226 3.868369 GGTGTGACCTATGCTTAACTGCA 60.868 47.826 0.00 0.00 40.38 4.41
1856 2234 2.666085 TCACGGTGTGACCTATGCT 58.334 52.632 8.17 0.00 37.67 3.79
1865 2243 1.261354 CTGTTCACATGTCACGGTGTG 59.739 52.381 8.17 6.77 45.37 3.82
1871 2249 2.738846 CTGGCTACTGTTCACATGTCAC 59.261 50.000 0.00 0.00 0.00 3.67
1889 2267 1.141881 CTAGTGGGTGTAGCGCTGG 59.858 63.158 22.90 0.00 0.00 4.85
1890 2268 0.246635 AACTAGTGGGTGTAGCGCTG 59.753 55.000 22.90 0.53 0.00 5.18
1891 2269 0.974383 AAACTAGTGGGTGTAGCGCT 59.026 50.000 17.26 17.26 0.00 5.92
1892 2270 1.804601 AAAACTAGTGGGTGTAGCGC 58.195 50.000 0.00 0.00 0.00 5.92
1911 2289 0.948678 GGTGTAGCACCGCTCAAAAA 59.051 50.000 2.31 0.00 44.95 1.94
1912 2290 2.624169 GGTGTAGCACCGCTCAAAA 58.376 52.632 2.31 0.00 44.95 2.44
1913 2291 4.371975 GGTGTAGCACCGCTCAAA 57.628 55.556 2.31 0.00 44.95 2.69
1929 2307 4.574828 CCGATTGAAACATAACCTAGTGGG 59.425 45.833 0.00 0.00 41.89 4.61
1930 2308 5.424757 TCCGATTGAAACATAACCTAGTGG 58.575 41.667 0.00 0.00 39.83 4.00
1931 2309 6.978343 TTCCGATTGAAACATAACCTAGTG 57.022 37.500 0.00 0.00 0.00 2.74
1932 2310 7.335627 TGATTCCGATTGAAACATAACCTAGT 58.664 34.615 0.00 0.00 36.33 2.57
1933 2311 7.786178 TGATTCCGATTGAAACATAACCTAG 57.214 36.000 0.00 0.00 36.33 3.02
1934 2312 8.210946 AGATGATTCCGATTGAAACATAACCTA 58.789 33.333 0.00 0.00 43.95 3.08
1935 2313 7.056635 AGATGATTCCGATTGAAACATAACCT 58.943 34.615 0.00 0.00 43.95 3.50
1936 2314 7.227512 AGAGATGATTCCGATTGAAACATAACC 59.772 37.037 0.00 0.00 43.95 2.85
1937 2315 8.147642 AGAGATGATTCCGATTGAAACATAAC 57.852 34.615 0.00 0.00 43.95 1.89
1938 2316 9.481340 CTAGAGATGATTCCGATTGAAACATAA 57.519 33.333 0.00 0.00 43.95 1.90
1939 2317 8.642432 ACTAGAGATGATTCCGATTGAAACATA 58.358 33.333 0.00 0.00 43.95 2.29
1940 2318 7.504403 ACTAGAGATGATTCCGATTGAAACAT 58.496 34.615 0.00 0.00 45.84 2.71
1941 2319 6.878317 ACTAGAGATGATTCCGATTGAAACA 58.122 36.000 0.00 0.00 39.68 2.83
1942 2320 6.422400 GGACTAGAGATGATTCCGATTGAAAC 59.578 42.308 0.00 0.00 36.33 2.78
1943 2321 6.325028 AGGACTAGAGATGATTCCGATTGAAA 59.675 38.462 0.00 0.00 36.33 2.69
1944 2322 5.835819 AGGACTAGAGATGATTCCGATTGAA 59.164 40.000 0.00 0.00 37.38 2.69
1945 2323 5.242615 CAGGACTAGAGATGATTCCGATTGA 59.757 44.000 0.00 0.00 0.00 2.57
1946 2324 5.010516 ACAGGACTAGAGATGATTCCGATTG 59.989 44.000 0.00 0.00 0.00 2.67
1947 2325 5.010516 CACAGGACTAGAGATGATTCCGATT 59.989 44.000 0.00 0.00 0.00 3.34
1948 2326 4.522405 CACAGGACTAGAGATGATTCCGAT 59.478 45.833 0.00 0.00 0.00 4.18
1949 2327 3.885901 CACAGGACTAGAGATGATTCCGA 59.114 47.826 0.00 0.00 0.00 4.55
1950 2328 3.885901 TCACAGGACTAGAGATGATTCCG 59.114 47.826 0.00 0.00 0.00 4.30
1951 2329 5.860941 TTCACAGGACTAGAGATGATTCC 57.139 43.478 0.00 0.00 0.00 3.01
1952 2330 9.474920 CTAATTTCACAGGACTAGAGATGATTC 57.525 37.037 0.00 0.00 0.00 2.52
1995 2373 2.689723 CGGGCCTCCATTAATTCCCTTT 60.690 50.000 0.84 0.00 0.00 3.11
2040 2418 7.716998 CCTATGATGGCTAAGCTTCTAGAAAAA 59.283 37.037 0.00 0.00 0.00 1.94
2140 2521 8.953990 GGTATGCTTAGTTTTAACGCAATAATG 58.046 33.333 0.00 0.00 31.49 1.90
2263 2644 6.003326 TGGAGTGCAATTAGAAGTGATTTCA 58.997 36.000 0.00 0.00 38.31 2.69
2264 2645 6.500684 TGGAGTGCAATTAGAAGTGATTTC 57.499 37.500 0.00 0.00 35.97 2.17
2311 2692 1.625315 AGCACAGCTCTTGGTGACATA 59.375 47.619 6.12 0.00 43.76 2.29
2373 2754 0.251916 TTGGTATTGAGTGCCTCCGG 59.748 55.000 0.00 0.00 33.07 5.14
2467 2848 2.045536 CCTCCCAAGGCTGTCTGC 60.046 66.667 0.00 0.00 35.37 4.26
2496 2877 4.232188 AGACATGGATGCTTCAGATGTT 57.768 40.909 14.11 5.86 30.58 2.71
2595 2976 2.035832 GCCCAGAGAGATAGAGTGCTTC 59.964 54.545 0.00 0.00 0.00 3.86
2655 3036 8.996271 GCACTAATCACAGATGATCAATTGATA 58.004 33.333 20.75 9.92 45.26 2.15
2680 3061 4.882671 TGAAAGAAACTGAACAGTCTGC 57.117 40.909 7.93 1.63 41.58 4.26
2681 3062 7.019774 TCAATGAAAGAAACTGAACAGTCTG 57.980 36.000 7.93 0.00 41.58 3.51
2821 3204 6.984474 TCCACGATATCATAAACCTGAAGAAC 59.016 38.462 3.12 0.00 0.00 3.01
2909 3292 1.814394 CATTGGCAGCACTAAGAGCAA 59.186 47.619 0.00 0.00 0.00 3.91
2997 3380 5.878406 TCTCCTTCTGACTGTTCTCTTTT 57.122 39.130 0.00 0.00 0.00 2.27
3008 3391 2.903798 CATCAGGCTTCTCCTTCTGAC 58.096 52.381 0.00 0.00 44.75 3.51
3086 3469 7.659390 TGGTTTTCTTTATGGTATTTTTGGCAG 59.341 33.333 0.00 0.00 0.00 4.85
3100 3483 4.835056 AGCCTGCTTCTTGGTTTTCTTTAT 59.165 37.500 0.00 0.00 0.00 1.40
3102 3485 3.033909 AGCCTGCTTCTTGGTTTTCTTT 58.966 40.909 0.00 0.00 0.00 2.52
3138 3521 3.281727 TCACTACCTCCATTGCAATCC 57.718 47.619 9.53 0.00 0.00 3.01
3144 3527 3.063997 GCGAAACATCACTACCTCCATTG 59.936 47.826 0.00 0.00 0.00 2.82
3153 3536 3.394674 TCAACCAGCGAAACATCACTA 57.605 42.857 0.00 0.00 0.00 2.74
3159 3542 0.592637 CTGCATCAACCAGCGAAACA 59.407 50.000 0.00 0.00 0.00 2.83
3167 3550 4.851843 AGATTCTTGATCTGCATCAACCA 58.148 39.130 0.00 0.00 42.99 3.67
3197 3580 2.092699 AGGAACTCAGGAAAGCTATGGC 60.093 50.000 0.00 0.00 39.06 4.40
3202 3585 2.633481 ACGTTAGGAACTCAGGAAAGCT 59.367 45.455 0.00 0.00 41.75 3.74
3221 3604 5.812642 AGTGCAGAAAGAGGTGATATTTACG 59.187 40.000 0.00 0.00 0.00 3.18
3222 3605 7.617041 AAGTGCAGAAAGAGGTGATATTTAC 57.383 36.000 0.00 0.00 0.00 2.01
3235 3619 7.467623 CAAAGCCTATAGTAAAGTGCAGAAAG 58.532 38.462 0.00 0.00 0.00 2.62
3244 3628 6.903419 GCCATTAGCAAAGCCTATAGTAAAG 58.097 40.000 0.00 0.00 42.97 1.85
3266 3650 6.197096 CGCATCAACTGAAATATAGTTTTGCC 59.803 38.462 12.00 1.96 39.33 4.52
3273 3657 6.293081 CCTTCACCGCATCAACTGAAATATAG 60.293 42.308 0.00 0.00 0.00 1.31
3290 3676 4.590850 TCATATGTGATCTCCTTCACCG 57.409 45.455 1.90 0.00 44.37 4.94
3342 3736 5.182380 GTGTACTCTCAGTTGCTAGAAGACT 59.818 44.000 0.00 0.00 0.00 3.24
3403 3810 8.686334 CCTACAGGCATAAATGTTTCACTTAAT 58.314 33.333 0.00 0.00 0.00 1.40
3404 3811 7.122055 CCCTACAGGCATAAATGTTTCACTTAA 59.878 37.037 0.00 0.00 0.00 1.85
3408 3815 4.097892 CCCCTACAGGCATAAATGTTTCAC 59.902 45.833 0.00 0.00 0.00 3.18
3462 3869 3.995636 TCTAGACTTCTTGGGCTATGGT 58.004 45.455 0.00 0.00 0.00 3.55
3576 3983 3.941483 CCGGAAAGACAAGTGCTAATGAT 59.059 43.478 0.00 0.00 0.00 2.45
3630 4037 3.626930 TCACCCAGCAAACCATAATACC 58.373 45.455 0.00 0.00 0.00 2.73
3783 4191 2.777459 ATTCTGGACGGAGGGAGTAT 57.223 50.000 0.00 0.00 0.00 2.12
3790 4198 3.179830 CGACAAGTAATTCTGGACGGAG 58.820 50.000 0.00 0.00 33.12 4.63
3796 4204 7.812648 TCCATTTTTACGACAAGTAATTCTGG 58.187 34.615 0.00 0.00 44.03 3.86
3839 4247 9.717942 GGATGTATCTAGATGCATTTTAGTTCT 57.282 33.333 29.66 11.50 42.77 3.01
3840 4248 8.651588 CGGATGTATCTAGATGCATTTTAGTTC 58.348 37.037 29.66 18.97 42.77 3.01
3841 4249 8.150945 ACGGATGTATCTAGATGCATTTTAGTT 58.849 33.333 29.66 12.78 42.77 2.24
3842 4250 7.671302 ACGGATGTATCTAGATGCATTTTAGT 58.329 34.615 29.66 23.35 42.77 2.24
3843 4251 8.539770 AACGGATGTATCTAGATGCATTTTAG 57.460 34.615 29.66 22.88 42.77 1.85
3844 4252 7.602644 GGAACGGATGTATCTAGATGCATTTTA 59.397 37.037 29.66 8.65 42.77 1.52
3845 4253 6.428159 GGAACGGATGTATCTAGATGCATTTT 59.572 38.462 29.66 23.19 42.77 1.82
3846 4254 5.934625 GGAACGGATGTATCTAGATGCATTT 59.065 40.000 29.66 22.13 42.77 2.32
3847 4255 5.247110 AGGAACGGATGTATCTAGATGCATT 59.753 40.000 29.66 18.66 42.77 3.56
3848 4256 4.774726 AGGAACGGATGTATCTAGATGCAT 59.225 41.667 29.54 29.54 44.84 3.96
3849 4257 4.152647 AGGAACGGATGTATCTAGATGCA 58.847 43.478 23.38 23.38 37.79 3.96
3850 4258 4.381079 GGAGGAACGGATGTATCTAGATGC 60.381 50.000 15.79 14.54 0.00 3.91
3851 4259 4.142578 CGGAGGAACGGATGTATCTAGATG 60.143 50.000 15.79 0.00 0.00 2.90
3852 4260 4.011023 CGGAGGAACGGATGTATCTAGAT 58.989 47.826 10.73 10.73 0.00 1.98
3853 4261 3.072038 TCGGAGGAACGGATGTATCTAGA 59.928 47.826 0.00 0.00 0.00 2.43
3854 4262 3.188873 GTCGGAGGAACGGATGTATCTAG 59.811 52.174 0.00 0.00 0.00 2.43
3855 4263 3.144506 GTCGGAGGAACGGATGTATCTA 58.855 50.000 0.00 0.00 0.00 1.98
3856 4264 1.955080 GTCGGAGGAACGGATGTATCT 59.045 52.381 0.00 0.00 0.00 1.98
3857 4265 1.679680 TGTCGGAGGAACGGATGTATC 59.320 52.381 0.00 0.00 0.00 2.24
3858 4266 1.771565 TGTCGGAGGAACGGATGTAT 58.228 50.000 0.00 0.00 0.00 2.29
3859 4267 1.475280 CTTGTCGGAGGAACGGATGTA 59.525 52.381 0.00 0.00 0.00 2.29
3860 4268 0.246635 CTTGTCGGAGGAACGGATGT 59.753 55.000 0.00 0.00 0.00 3.06
3861 4269 0.246635 ACTTGTCGGAGGAACGGATG 59.753 55.000 0.00 0.00 0.00 3.51
3862 4270 1.843368 TACTTGTCGGAGGAACGGAT 58.157 50.000 0.00 0.00 0.00 4.18
3863 4271 1.843368 ATACTTGTCGGAGGAACGGA 58.157 50.000 0.00 0.00 0.00 4.69
3864 4272 2.667473 AATACTTGTCGGAGGAACGG 57.333 50.000 0.00 0.00 0.00 4.44
3865 4273 3.846360 AGAAATACTTGTCGGAGGAACG 58.154 45.455 0.00 0.00 0.00 3.95
3866 4274 6.205101 TCTAGAAATACTTGTCGGAGGAAC 57.795 41.667 0.00 0.00 0.00 3.62
3867 4275 6.183360 CCATCTAGAAATACTTGTCGGAGGAA 60.183 42.308 0.00 0.00 0.00 3.36
3868 4276 5.302059 CCATCTAGAAATACTTGTCGGAGGA 59.698 44.000 0.00 0.00 0.00 3.71
3869 4277 5.302059 TCCATCTAGAAATACTTGTCGGAGG 59.698 44.000 0.00 0.00 0.00 4.30
3870 4278 6.392625 TCCATCTAGAAATACTTGTCGGAG 57.607 41.667 0.00 0.00 0.00 4.63
3871 4279 5.302059 CCTCCATCTAGAAATACTTGTCGGA 59.698 44.000 0.00 0.00 0.00 4.55
3872 4280 5.509840 CCCTCCATCTAGAAATACTTGTCGG 60.510 48.000 0.00 0.00 0.00 4.79
3876 4284 6.739331 ACTCCCTCCATCTAGAAATACTTG 57.261 41.667 0.00 0.00 0.00 3.16
3884 4292 9.815306 GCATAATATATACTCCCTCCATCTAGA 57.185 37.037 0.00 0.00 0.00 2.43
3885 4293 9.593565 TGCATAATATATACTCCCTCCATCTAG 57.406 37.037 0.00 0.00 0.00 2.43
3886 4294 9.368416 GTGCATAATATATACTCCCTCCATCTA 57.632 37.037 0.00 0.00 0.00 1.98
3887 4295 7.846311 TGTGCATAATATATACTCCCTCCATCT 59.154 37.037 0.00 0.00 0.00 2.90
3888 4296 8.023021 TGTGCATAATATATACTCCCTCCATC 57.977 38.462 0.00 0.00 0.00 3.51
3890 4298 7.457852 ACTTGTGCATAATATATACTCCCTCCA 59.542 37.037 0.00 0.00 0.00 3.86
3915 4323 6.473455 GCACAAGAAGAATTATAACATGGCAC 59.527 38.462 0.00 0.00 0.00 5.01
3916 4324 6.563422 GCACAAGAAGAATTATAACATGGCA 58.437 36.000 0.00 0.00 0.00 4.92
4085 4508 2.161855 GCAAACATCCATGTGACCTCA 58.838 47.619 0.00 0.00 41.61 3.86
4103 4526 8.073768 GCTTACAAGTTGTAGTTAATCAAAGCA 58.926 33.333 21.10 3.36 33.92 3.91
4105 4528 8.564574 TGGCTTACAAGTTGTAGTTAATCAAAG 58.435 33.333 15.06 9.74 33.92 2.77
4135 4558 6.618811 AGCAAAATGATTACAGAGCAAAGAG 58.381 36.000 0.00 0.00 0.00 2.85
4187 4611 5.174035 CGAAGAGGTACAGATGATAAAAGCG 59.826 44.000 0.00 0.00 0.00 4.68
4202 4626 0.966179 TGCAGACAAGCGAAGAGGTA 59.034 50.000 0.00 0.00 37.31 3.08
4204 4628 1.396301 GAATGCAGACAAGCGAAGAGG 59.604 52.381 0.00 0.00 37.31 3.69
4234 4658 5.406649 TGGCTGTAAACTCAAAAACAAGTG 58.593 37.500 0.00 0.00 0.00 3.16
4236 4660 6.811170 TCTTTGGCTGTAAACTCAAAAACAAG 59.189 34.615 0.00 0.00 0.00 3.16
4317 4741 1.061421 CGCATTTGGCATTGCATGAAC 59.939 47.619 19.07 0.00 45.17 3.18
4350 4774 2.161410 TCATGACGCTACAACCAATTGC 59.839 45.455 0.00 0.00 39.66 3.56
4371 4795 2.283966 CCTGTGGGTCTCTCCGGT 60.284 66.667 0.00 0.00 37.00 5.28
4435 4859 5.103771 AGAGTATTTAGGAACGGAGGGAGTA 60.104 44.000 0.00 0.00 0.00 2.59
4436 4860 3.959449 GAGTATTTAGGAACGGAGGGAGT 59.041 47.826 0.00 0.00 0.00 3.85
4437 4861 4.216708 AGAGTATTTAGGAACGGAGGGAG 58.783 47.826 0.00 0.00 0.00 4.30
4438 4862 4.079327 AGAGAGTATTTAGGAACGGAGGGA 60.079 45.833 0.00 0.00 0.00 4.20
4439 4863 4.216708 AGAGAGTATTTAGGAACGGAGGG 58.783 47.826 0.00 0.00 0.00 4.30
4440 4864 4.278919 GGAGAGAGTATTTAGGAACGGAGG 59.721 50.000 0.00 0.00 0.00 4.30
4441 4865 4.023878 CGGAGAGAGTATTTAGGAACGGAG 60.024 50.000 0.00 0.00 0.00 4.63
4442 4866 3.881688 CGGAGAGAGTATTTAGGAACGGA 59.118 47.826 0.00 0.00 0.00 4.69
4443 4867 3.631227 ACGGAGAGAGTATTTAGGAACGG 59.369 47.826 0.00 0.00 0.00 4.44
4444 4868 4.575645 AGACGGAGAGAGTATTTAGGAACG 59.424 45.833 0.00 0.00 0.00 3.95
4445 4869 5.589452 TGAGACGGAGAGAGTATTTAGGAAC 59.411 44.000 0.00 0.00 0.00 3.62
4446 4870 5.752650 TGAGACGGAGAGAGTATTTAGGAA 58.247 41.667 0.00 0.00 0.00 3.36
4447 4871 5.369409 TGAGACGGAGAGAGTATTTAGGA 57.631 43.478 0.00 0.00 0.00 2.94
4448 4872 6.452494 TTTGAGACGGAGAGAGTATTTAGG 57.548 41.667 0.00 0.00 0.00 2.69
4451 4875 8.532819 ACTTATTTTGAGACGGAGAGAGTATTT 58.467 33.333 0.00 0.00 0.00 1.40
4452 4876 7.976734 CACTTATTTTGAGACGGAGAGAGTATT 59.023 37.037 0.00 0.00 0.00 1.89
4453 4877 7.122948 ACACTTATTTTGAGACGGAGAGAGTAT 59.877 37.037 0.00 0.00 0.00 2.12
4454 4878 6.433404 ACACTTATTTTGAGACGGAGAGAGTA 59.567 38.462 0.00 0.00 0.00 2.59
4455 4879 5.244178 ACACTTATTTTGAGACGGAGAGAGT 59.756 40.000 0.00 0.00 0.00 3.24
4456 4880 5.715070 ACACTTATTTTGAGACGGAGAGAG 58.285 41.667 0.00 0.00 0.00 3.20
4457 4881 5.477291 AGACACTTATTTTGAGACGGAGAGA 59.523 40.000 0.00 0.00 0.00 3.10
4458 4882 5.715070 AGACACTTATTTTGAGACGGAGAG 58.285 41.667 0.00 0.00 0.00 3.20
4459 4883 5.710984 GAGACACTTATTTTGAGACGGAGA 58.289 41.667 0.00 0.00 0.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.