Multiple sequence alignment - TraesCS7B01G260500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G260500 chr7B 100.000 2895 0 0 1 2895 480802225 480799331 0.000000e+00 5347.0
1 TraesCS7B01G260500 chr7B 82.920 363 42 12 1278 1633 657395052 657394703 3.130000e-80 309.0
2 TraesCS7B01G260500 chr7B 89.655 116 10 2 2234 2347 657623377 657623492 2.600000e-31 147.0
3 TraesCS7B01G260500 chr7B 90.351 114 5 5 2240 2347 657606596 657606483 9.340000e-31 145.0
4 TraesCS7B01G260500 chr7B 100.000 67 0 0 3165 3231 480799061 480798995 1.220000e-24 124.0
5 TraesCS7B01G260500 chr7B 82.517 143 21 2 2318 2460 480799850 480799712 4.380000e-24 122.0
6 TraesCS7B01G260500 chr7B 82.517 143 21 2 2376 2514 480799908 480799766 4.380000e-24 122.0
7 TraesCS7B01G260500 chr7B 86.905 84 10 1 1300 1382 657533078 657533161 3.430000e-15 93.5
8 TraesCS7B01G260500 chr7D 91.328 1280 66 15 1094 2359 458942919 458941671 0.000000e+00 1707.0
9 TraesCS7B01G260500 chr7D 90.000 260 18 3 141 397 458944767 458944513 2.400000e-86 329.0
10 TraesCS7B01G260500 chr7D 90.135 223 17 4 1291 1508 586761939 586761717 5.280000e-73 285.0
11 TraesCS7B01G260500 chr7D 84.516 310 18 14 2612 2892 458941456 458941148 2.450000e-71 279.0
12 TraesCS7B01G260500 chr7D 95.238 126 3 3 2461 2583 458941664 458941539 2.540000e-46 196.0
13 TraesCS7B01G260500 chr7D 80.496 282 26 15 2090 2346 586761168 586760891 4.260000e-44 189.0
14 TraesCS7B01G260500 chr7D 81.783 258 16 14 2663 2892 458940504 458940250 1.530000e-43 187.0
15 TraesCS7B01G260500 chr7D 86.792 159 16 2 1 154 458952434 458952276 4.290000e-39 172.0
16 TraesCS7B01G260500 chr7D 88.889 99 10 1 612 710 458944504 458944407 1.570000e-23 121.0
17 TraesCS7B01G260500 chr7D 93.443 61 2 2 2401 2460 458941669 458941610 4.440000e-14 89.8
18 TraesCS7B01G260500 chr7A 89.069 924 63 16 1056 1970 541359233 541360127 0.000000e+00 1112.0
19 TraesCS7B01G260500 chr7A 86.825 463 45 10 1 451 541358235 541358693 1.340000e-138 503.0
20 TraesCS7B01G260500 chr7A 78.135 311 39 17 2048 2347 541360228 541360520 1.540000e-38 171.0
21 TraesCS7B01G260500 chr7A 91.892 111 5 2 2236 2342 677846358 677846248 5.580000e-33 152.0
22 TraesCS7B01G260500 chr7A 92.233 103 6 2 2230 2331 677938912 677939013 9.340000e-31 145.0
23 TraesCS7B01G260500 chr7A 91.525 59 5 0 1278 1336 677852181 677852123 7.430000e-12 82.4
24 TraesCS7B01G260500 chr3D 94.845 97 4 1 2232 2327 394196369 394196273 2.010000e-32 150.0
25 TraesCS7B01G260500 chr3B 92.381 105 4 3 2236 2337 723273026 723272923 2.600000e-31 147.0
26 TraesCS7B01G260500 chr2A 96.875 32 1 0 819 850 542470349 542470318 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G260500 chr7B 480798995 480802225 3230 True 1428.750000 5347 91.258500 1 3231 4 chr7B.!!$R3 3230
1 TraesCS7B01G260500 chr7D 458940250 458944767 4517 True 415.542857 1707 89.313857 141 2892 7 chr7D.!!$R2 2751
2 TraesCS7B01G260500 chr7D 586760891 586761939 1048 True 237.000000 285 85.315500 1291 2346 2 chr7D.!!$R3 1055
3 TraesCS7B01G260500 chr7A 541358235 541360520 2285 False 595.333333 1112 84.676333 1 2347 3 chr7A.!!$F2 2346

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
773 1069 0.031994 GTGTGGCGTGGCATTTTCTT 59.968 50.0 0.00 0.0 0.00 2.52 F
1786 3304 0.036388 AAAGAGATTGCTCGCCGGAA 60.036 50.0 5.05 0.0 45.98 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1907 3432 0.169672 CTTTGCAGCATCAACCTCCG 59.830 55.0 0.0 0.0 0.00 4.63 R
2791 4525 0.113776 AAGGACCTCACCACCTACGA 59.886 55.0 0.0 0.0 33.34 3.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.737855 ATTTTCTGGCGCTACTCTCTTA 57.262 40.909 7.64 0.00 0.00 2.10
30 31 3.315749 GCGCTACTCTCTTAGTGGTGTAT 59.684 47.826 0.00 0.00 45.99 2.29
36 37 4.838986 ACTCTCTTAGTGGTGTATGGTGTT 59.161 41.667 0.00 0.00 36.93 3.32
39 40 4.164981 TCTTAGTGGTGTATGGTGTTCCT 58.835 43.478 0.00 0.00 34.23 3.36
42 43 2.441750 AGTGGTGTATGGTGTTCCTGTT 59.558 45.455 0.00 0.00 34.23 3.16
48 49 5.123344 GGTGTATGGTGTTCCTGTTGATTAC 59.877 44.000 0.00 0.00 34.23 1.89
53 54 3.556423 GGTGTTCCTGTTGATTACGAGGT 60.556 47.826 0.00 0.00 0.00 3.85
55 56 3.070446 TGTTCCTGTTGATTACGAGGTGT 59.930 43.478 0.00 0.00 0.00 4.16
60 61 5.244402 TCCTGTTGATTACGAGGTGTTCTTA 59.756 40.000 0.00 0.00 0.00 2.10
61 62 5.929992 CCTGTTGATTACGAGGTGTTCTTAA 59.070 40.000 0.00 0.00 0.00 1.85
63 64 7.041644 CCTGTTGATTACGAGGTGTTCTTAAAA 60.042 37.037 0.00 0.00 0.00 1.52
83 85 4.509915 AAAAACAGATTATACCGCGTCG 57.490 40.909 4.92 0.00 0.00 5.12
85 87 2.857592 ACAGATTATACCGCGTCGTT 57.142 45.000 4.92 0.00 0.00 3.85
88 90 3.305094 ACAGATTATACCGCGTCGTTTTG 59.695 43.478 4.92 0.00 0.00 2.44
95 97 1.528248 CCGCGTCGTTTTGCTTGTTG 61.528 55.000 4.92 0.00 0.00 3.33
156 158 4.896482 ACTTCTTCAGACTGACAGTTAGGT 59.104 41.667 10.01 0.00 0.00 3.08
167 169 3.253188 TGACAGTTAGGTACGCGTTTACT 59.747 43.478 20.78 15.97 0.00 2.24
181 183 4.211794 CGCGTTTACTTTCTTTTCCCAGTA 59.788 41.667 0.00 0.00 0.00 2.74
207 209 2.100916 ACGCGCTTACTTGGACAGATAT 59.899 45.455 5.73 0.00 0.00 1.63
258 260 2.092646 AGCTCAACACCAACACCAGTAA 60.093 45.455 0.00 0.00 0.00 2.24
264 266 6.123651 TCAACACCAACACCAGTAACTATTT 58.876 36.000 0.00 0.00 0.00 1.40
423 437 7.566760 AGACTATTGAGACAGAGACACATAG 57.433 40.000 0.00 0.00 0.00 2.23
430 444 5.481824 TGAGACAGAGACACATAGATTTGGT 59.518 40.000 0.00 0.00 0.00 3.67
464 478 9.974980 GCTTACTTAGCTATGAATAACTTCTCT 57.025 33.333 13.22 0.00 46.77 3.10
466 480 9.751542 TTACTTAGCTATGAATAACTTCTCTGC 57.248 33.333 13.22 0.00 32.29 4.26
467 481 8.017418 ACTTAGCTATGAATAACTTCTCTGCT 57.983 34.615 13.22 0.00 35.99 4.24
468 482 7.925483 ACTTAGCTATGAATAACTTCTCTGCTG 59.075 37.037 13.22 0.00 34.79 4.41
469 483 6.232581 AGCTATGAATAACTTCTCTGCTGT 57.767 37.500 0.00 0.00 33.18 4.40
470 484 6.648192 AGCTATGAATAACTTCTCTGCTGTT 58.352 36.000 0.00 0.00 33.18 3.16
471 485 7.108847 AGCTATGAATAACTTCTCTGCTGTTT 58.891 34.615 0.00 0.00 33.18 2.83
472 486 7.279758 AGCTATGAATAACTTCTCTGCTGTTTC 59.720 37.037 0.00 0.00 33.18 2.78
473 487 7.065085 GCTATGAATAACTTCTCTGCTGTTTCA 59.935 37.037 0.00 0.00 32.29 2.69
474 488 7.934855 ATGAATAACTTCTCTGCTGTTTCAT 57.065 32.000 0.00 0.00 32.29 2.57
475 489 7.750229 TGAATAACTTCTCTGCTGTTTCATT 57.250 32.000 0.00 0.00 32.29 2.57
476 490 8.169977 TGAATAACTTCTCTGCTGTTTCATTT 57.830 30.769 0.00 0.00 32.29 2.32
477 491 8.632679 TGAATAACTTCTCTGCTGTTTCATTTT 58.367 29.630 0.00 0.00 32.29 1.82
478 492 8.807667 AATAACTTCTCTGCTGTTTCATTTTG 57.192 30.769 0.00 0.00 0.00 2.44
479 493 4.614946 ACTTCTCTGCTGTTTCATTTTGC 58.385 39.130 0.00 0.00 0.00 3.68
480 494 4.098349 ACTTCTCTGCTGTTTCATTTTGCA 59.902 37.500 0.00 0.00 0.00 4.08
481 495 4.859304 TCTCTGCTGTTTCATTTTGCAT 57.141 36.364 0.00 0.00 33.02 3.96
482 496 5.204409 TCTCTGCTGTTTCATTTTGCATT 57.796 34.783 0.00 0.00 33.02 3.56
483 497 4.986034 TCTCTGCTGTTTCATTTTGCATTG 59.014 37.500 0.00 0.00 33.02 2.82
484 498 4.059511 TCTGCTGTTTCATTTTGCATTGG 58.940 39.130 0.00 0.00 33.02 3.16
485 499 3.806380 TGCTGTTTCATTTTGCATTGGT 58.194 36.364 0.00 0.00 0.00 3.67
486 500 3.560481 TGCTGTTTCATTTTGCATTGGTG 59.440 39.130 0.00 0.00 0.00 4.17
487 501 3.560896 GCTGTTTCATTTTGCATTGGTGT 59.439 39.130 0.00 0.00 0.00 4.16
488 502 4.035441 GCTGTTTCATTTTGCATTGGTGTT 59.965 37.500 0.00 0.00 0.00 3.32
489 503 5.236047 GCTGTTTCATTTTGCATTGGTGTTA 59.764 36.000 0.00 0.00 0.00 2.41
490 504 6.238320 GCTGTTTCATTTTGCATTGGTGTTAA 60.238 34.615 0.00 0.00 0.00 2.01
491 505 7.009568 TGTTTCATTTTGCATTGGTGTTAAC 57.990 32.000 0.00 0.00 0.00 2.01
544 560 8.961634 TCAGCACTATAGATGTATCCAGATAAC 58.038 37.037 6.78 0.00 0.00 1.89
564 850 2.957006 ACCGGTAGCTATCCACAACTAG 59.043 50.000 4.49 0.00 0.00 2.57
566 852 2.604855 CGGTAGCTATCCACAACTAGCG 60.605 54.545 0.00 6.15 46.07 4.26
573 859 0.470766 TCCACAACTAGCGTTTGGGT 59.529 50.000 0.00 0.00 34.69 4.51
580 866 1.623811 ACTAGCGTTTGGGTGAGTCAT 59.376 47.619 0.00 0.00 0.00 3.06
582 868 2.851263 AGCGTTTGGGTGAGTCATAA 57.149 45.000 0.00 0.00 0.00 1.90
583 869 2.423577 AGCGTTTGGGTGAGTCATAAC 58.576 47.619 0.00 0.00 0.00 1.89
621 911 5.907866 TCAGGTTCAACTATATGTCGTCA 57.092 39.130 0.00 0.00 0.00 4.35
695 991 7.039363 AGCTTCTTCATACAGACTGTTAAGAGT 60.039 37.037 14.50 4.69 30.05 3.24
696 992 8.244802 GCTTCTTCATACAGACTGTTAAGAGTA 58.755 37.037 14.50 6.39 30.05 2.59
710 1006 9.833917 ACTGTTAAGAGTAAGCTTACTTTTCTT 57.166 29.630 33.60 30.74 43.64 2.52
717 1013 4.336889 AAGCTTACTTTTCTTTTGGGCC 57.663 40.909 0.00 0.00 29.41 5.80
718 1014 2.632996 AGCTTACTTTTCTTTTGGGCCC 59.367 45.455 17.59 17.59 0.00 5.80
719 1015 2.289444 GCTTACTTTTCTTTTGGGCCCC 60.289 50.000 22.27 0.85 0.00 5.80
720 1016 2.018355 TACTTTTCTTTTGGGCCCCC 57.982 50.000 22.27 0.00 0.00 5.40
721 1017 0.267658 ACTTTTCTTTTGGGCCCCCT 59.732 50.000 22.27 0.00 36.94 4.79
722 1018 1.345009 ACTTTTCTTTTGGGCCCCCTT 60.345 47.619 22.27 0.00 36.94 3.95
723 1019 2.090437 ACTTTTCTTTTGGGCCCCCTTA 60.090 45.455 22.27 0.00 36.94 2.69
724 1020 2.319025 TTTCTTTTGGGCCCCCTTAG 57.681 50.000 22.27 11.63 36.94 2.18
725 1021 0.252057 TTCTTTTGGGCCCCCTTAGC 60.252 55.000 22.27 0.00 36.94 3.09
732 1028 4.109675 GCCCCCTTAGCCAGCGAA 62.110 66.667 0.00 0.00 0.00 4.70
734 1030 2.511600 CCCCTTAGCCAGCGAACG 60.512 66.667 0.00 0.00 0.00 3.95
735 1031 2.264794 CCCTTAGCCAGCGAACGT 59.735 61.111 0.00 0.00 0.00 3.99
736 1032 1.375523 CCCTTAGCCAGCGAACGTT 60.376 57.895 0.00 0.00 0.00 3.99
737 1033 1.359459 CCCTTAGCCAGCGAACGTTC 61.359 60.000 18.47 18.47 0.00 3.95
746 1042 2.809601 CGAACGTTCGCCAGGAGG 60.810 66.667 34.54 9.32 44.26 4.30
747 1043 2.434359 GAACGTTCGCCAGGAGGG 60.434 66.667 13.36 0.00 40.85 4.30
755 1051 1.607612 CGCCAGGAGGGGTTTATGT 59.392 57.895 0.00 0.00 42.60 2.29
757 1053 0.331616 GCCAGGAGGGGTTTATGTGT 59.668 55.000 0.00 0.00 37.04 3.72
759 1055 1.340991 CCAGGAGGGGTTTATGTGTGG 60.341 57.143 0.00 0.00 0.00 4.17
760 1056 0.331616 AGGAGGGGTTTATGTGTGGC 59.668 55.000 0.00 0.00 0.00 5.01
761 1057 1.029947 GGAGGGGTTTATGTGTGGCG 61.030 60.000 0.00 0.00 0.00 5.69
763 1059 0.608035 AGGGGTTTATGTGTGGCGTG 60.608 55.000 0.00 0.00 0.00 5.34
764 1060 1.591504 GGGGTTTATGTGTGGCGTGG 61.592 60.000 0.00 0.00 0.00 4.94
766 1062 1.519751 GGTTTATGTGTGGCGTGGCA 61.520 55.000 0.00 0.00 0.00 4.92
770 1066 1.252175 TATGTGTGGCGTGGCATTTT 58.748 45.000 0.00 0.00 0.00 1.82
771 1067 0.038343 ATGTGTGGCGTGGCATTTTC 60.038 50.000 0.00 0.00 0.00 2.29
773 1069 0.031994 GTGTGGCGTGGCATTTTCTT 59.968 50.000 0.00 0.00 0.00 2.52
774 1070 0.313672 TGTGGCGTGGCATTTTCTTC 59.686 50.000 0.00 0.00 0.00 2.87
775 1071 0.313672 GTGGCGTGGCATTTTCTTCA 59.686 50.000 0.00 0.00 0.00 3.02
776 1072 0.597568 TGGCGTGGCATTTTCTTCAG 59.402 50.000 0.00 0.00 0.00 3.02
777 1073 0.881118 GGCGTGGCATTTTCTTCAGA 59.119 50.000 0.00 0.00 0.00 3.27
778 1074 1.135575 GGCGTGGCATTTTCTTCAGAG 60.136 52.381 0.00 0.00 0.00 3.35
779 1075 1.135575 GCGTGGCATTTTCTTCAGAGG 60.136 52.381 0.00 0.00 0.00 3.69
780 1076 2.426522 CGTGGCATTTTCTTCAGAGGA 58.573 47.619 0.00 0.00 0.00 3.71
781 1077 2.813754 CGTGGCATTTTCTTCAGAGGAA 59.186 45.455 0.00 0.00 0.00 3.36
782 1078 3.365364 CGTGGCATTTTCTTCAGAGGAAC 60.365 47.826 0.00 0.00 0.00 3.62
783 1079 3.569701 GTGGCATTTTCTTCAGAGGAACA 59.430 43.478 0.00 0.00 0.00 3.18
784 1080 4.219288 GTGGCATTTTCTTCAGAGGAACAT 59.781 41.667 0.00 0.00 0.00 2.71
785 1081 4.219070 TGGCATTTTCTTCAGAGGAACATG 59.781 41.667 14.31 14.31 35.33 3.21
786 1082 4.381292 GGCATTTTCTTCAGAGGAACATGG 60.381 45.833 18.28 5.52 33.82 3.66
787 1083 4.741342 CATTTTCTTCAGAGGAACATGGC 58.259 43.478 11.79 0.00 31.27 4.40
788 1084 3.507162 TTTCTTCAGAGGAACATGGCA 57.493 42.857 0.00 0.00 0.00 4.92
789 1085 3.726557 TTCTTCAGAGGAACATGGCAT 57.273 42.857 0.00 0.00 0.00 4.40
790 1086 3.726557 TCTTCAGAGGAACATGGCATT 57.273 42.857 0.00 0.00 0.00 3.56
791 1087 4.038271 TCTTCAGAGGAACATGGCATTT 57.962 40.909 0.00 0.00 0.00 2.32
792 1088 4.410099 TCTTCAGAGGAACATGGCATTTT 58.590 39.130 0.00 0.00 0.00 1.82
793 1089 4.460382 TCTTCAGAGGAACATGGCATTTTC 59.540 41.667 16.21 16.21 0.00 2.29
794 1090 4.038271 TCAGAGGAACATGGCATTTTCT 57.962 40.909 21.83 12.81 0.00 2.52
795 1091 3.760151 TCAGAGGAACATGGCATTTTCTG 59.240 43.478 21.83 14.45 33.81 3.02
796 1092 3.094572 AGAGGAACATGGCATTTTCTGG 58.905 45.455 21.83 2.84 0.00 3.86
807 1103 4.629527 GCATTTTCTGGCAAAAAGTACG 57.370 40.909 11.31 0.00 32.04 3.67
808 1104 4.295051 GCATTTTCTGGCAAAAAGTACGA 58.705 39.130 11.31 0.00 32.04 3.43
809 1105 4.742659 GCATTTTCTGGCAAAAAGTACGAA 59.257 37.500 11.31 0.00 32.04 3.85
810 1106 5.233263 GCATTTTCTGGCAAAAAGTACGAAA 59.767 36.000 11.31 3.03 32.04 3.46
811 1107 6.073819 GCATTTTCTGGCAAAAAGTACGAAAT 60.074 34.615 11.31 0.00 32.04 2.17
812 1108 6.820470 TTTTCTGGCAAAAAGTACGAAATG 57.180 33.333 0.00 0.00 0.00 2.32
813 1109 3.896122 TCTGGCAAAAAGTACGAAATGC 58.104 40.909 7.83 7.83 0.00 3.56
817 1113 3.638484 GCAAAAAGTACGAAATGCCACT 58.362 40.909 0.00 0.00 0.00 4.00
818 1114 3.668656 GCAAAAAGTACGAAATGCCACTC 59.331 43.478 0.00 0.00 0.00 3.51
819 1115 4.556699 GCAAAAAGTACGAAATGCCACTCT 60.557 41.667 0.00 0.00 0.00 3.24
820 1116 5.147162 CAAAAAGTACGAAATGCCACTCTC 58.853 41.667 0.00 0.00 0.00 3.20
821 1117 2.674796 AGTACGAAATGCCACTCTCC 57.325 50.000 0.00 0.00 0.00 3.71
822 1118 1.207329 AGTACGAAATGCCACTCTCCC 59.793 52.381 0.00 0.00 0.00 4.30
823 1119 0.539986 TACGAAATGCCACTCTCCCC 59.460 55.000 0.00 0.00 0.00 4.81
824 1120 1.452108 CGAAATGCCACTCTCCCCC 60.452 63.158 0.00 0.00 0.00 5.40
825 1121 1.691219 GAAATGCCACTCTCCCCCA 59.309 57.895 0.00 0.00 0.00 4.96
826 1122 0.394899 GAAATGCCACTCTCCCCCAG 60.395 60.000 0.00 0.00 0.00 4.45
827 1123 2.505364 AAATGCCACTCTCCCCCAGC 62.505 60.000 0.00 0.00 0.00 4.85
830 1126 3.003173 CCACTCTCCCCCAGCGAA 61.003 66.667 0.00 0.00 0.00 4.70
831 1127 2.266055 CACTCTCCCCCAGCGAAC 59.734 66.667 0.00 0.00 0.00 3.95
832 1128 3.382832 ACTCTCCCCCAGCGAACG 61.383 66.667 0.00 0.00 0.00 3.95
833 1129 3.382832 CTCTCCCCCAGCGAACGT 61.383 66.667 0.00 0.00 0.00 3.99
834 1130 3.358076 CTCTCCCCCAGCGAACGTC 62.358 68.421 0.00 0.00 0.00 4.34
835 1131 3.691342 CTCCCCCAGCGAACGTCA 61.691 66.667 0.00 0.00 0.00 4.35
836 1132 3.649277 CTCCCCCAGCGAACGTCAG 62.649 68.421 0.00 0.00 0.00 3.51
839 1135 4.680237 CCCAGCGAACGTCAGCCA 62.680 66.667 10.96 0.00 0.00 4.75
840 1136 3.114616 CCAGCGAACGTCAGCCAG 61.115 66.667 10.96 5.27 0.00 4.85
841 1137 2.049156 CAGCGAACGTCAGCCAGA 60.049 61.111 10.96 0.00 0.00 3.86
842 1138 1.446792 CAGCGAACGTCAGCCAGAT 60.447 57.895 10.96 0.00 0.00 2.90
843 1139 0.179137 CAGCGAACGTCAGCCAGATA 60.179 55.000 10.96 0.00 0.00 1.98
844 1140 0.530744 AGCGAACGTCAGCCAGATAA 59.469 50.000 10.96 0.00 0.00 1.75
845 1141 0.924090 GCGAACGTCAGCCAGATAAG 59.076 55.000 4.09 0.00 0.00 1.73
846 1142 1.469251 GCGAACGTCAGCCAGATAAGA 60.469 52.381 4.09 0.00 0.00 2.10
847 1143 2.799917 GCGAACGTCAGCCAGATAAGAT 60.800 50.000 4.09 0.00 0.00 2.40
848 1144 3.448686 CGAACGTCAGCCAGATAAGATT 58.551 45.455 0.00 0.00 0.00 2.40
849 1145 3.865745 CGAACGTCAGCCAGATAAGATTT 59.134 43.478 0.00 0.00 0.00 2.17
850 1146 4.026475 CGAACGTCAGCCAGATAAGATTTC 60.026 45.833 0.00 0.00 0.00 2.17
851 1147 3.798202 ACGTCAGCCAGATAAGATTTCC 58.202 45.455 0.00 0.00 0.00 3.13
852 1148 2.797156 CGTCAGCCAGATAAGATTTCCG 59.203 50.000 0.00 0.00 0.00 4.30
853 1149 2.545946 GTCAGCCAGATAAGATTTCCGC 59.454 50.000 0.00 0.00 0.00 5.54
854 1150 2.435805 TCAGCCAGATAAGATTTCCGCT 59.564 45.455 0.00 0.00 0.00 5.52
857 1153 3.135530 AGCCAGATAAGATTTCCGCTTCT 59.864 43.478 0.00 0.00 0.00 2.85
862 1158 6.317391 CCAGATAAGATTTCCGCTTCTTTTCT 59.683 38.462 0.00 0.00 39.38 2.52
863 1159 7.185453 CAGATAAGATTTCCGCTTCTTTTCTG 58.815 38.462 14.34 14.34 44.20 3.02
866 1162 1.616159 TTTCCGCTTCTTTTCTGGGG 58.384 50.000 0.00 0.00 35.47 4.96
876 1172 1.071699 CTTTTCTGGGGAGGAACACGA 59.928 52.381 0.00 0.00 0.00 4.35
880 1176 2.108168 TCTGGGGAGGAACACGATTAG 58.892 52.381 0.00 0.00 0.00 1.73
915 2209 8.820628 TTTATTTATTCGAAATCAGCTCAACG 57.179 30.769 0.00 0.00 0.00 4.10
940 2234 8.709646 CGTAATAACCAGTAGCTATTCAAATCC 58.290 37.037 0.00 0.00 0.00 3.01
944 2238 5.675538 ACCAGTAGCTATTCAAATCCAGAC 58.324 41.667 0.00 0.00 0.00 3.51
945 2239 5.426833 ACCAGTAGCTATTCAAATCCAGACT 59.573 40.000 0.00 0.00 0.00 3.24
947 2241 6.259608 CCAGTAGCTATTCAAATCCAGACTTG 59.740 42.308 0.00 0.00 0.00 3.16
957 2251 0.764271 TCCAGACTTGGCACATCACA 59.236 50.000 0.00 0.00 44.63 3.58
958 2252 0.877071 CCAGACTTGGCACATCACAC 59.123 55.000 0.00 0.00 39.30 3.82
992 2287 5.914085 CTAGCAATTAGGAATGAGAACGG 57.086 43.478 0.00 0.00 0.00 4.44
1003 2298 4.275936 GGAATGAGAACGGGTCAAATATGG 59.724 45.833 0.00 0.00 0.00 2.74
1006 2301 3.214328 GAGAACGGGTCAAATATGGCAT 58.786 45.455 4.88 4.88 30.82 4.40
1007 2302 2.951642 AGAACGGGTCAAATATGGCATG 59.048 45.455 10.98 0.00 30.82 4.06
1009 2304 0.314935 CGGGTCAAATATGGCATGCC 59.685 55.000 30.54 30.54 30.82 4.40
1010 2305 1.708341 GGGTCAAATATGGCATGCCT 58.292 50.000 35.53 23.20 36.94 4.75
1012 2307 1.342174 GGTCAAATATGGCATGCCTGG 59.658 52.381 35.53 14.87 36.94 4.45
1029 2324 4.351874 CCTGGTTCAGGTTAAAGAGACA 57.648 45.455 5.82 0.00 45.82 3.41
1040 2335 2.877043 AAAGAGACACGTACACGGTT 57.123 45.000 6.72 0.00 44.95 4.44
1049 2344 5.294060 AGACACGTACACGGTTTTTATGTTT 59.706 36.000 6.72 0.00 44.95 2.83
1050 2345 6.478344 AGACACGTACACGGTTTTTATGTTTA 59.522 34.615 6.72 0.00 44.95 2.01
1051 2346 6.648502 ACACGTACACGGTTTTTATGTTTAG 58.351 36.000 6.72 0.00 44.95 1.85
1052 2347 6.257630 ACACGTACACGGTTTTTATGTTTAGT 59.742 34.615 6.72 0.00 44.95 2.24
1053 2348 7.436673 ACACGTACACGGTTTTTATGTTTAGTA 59.563 33.333 6.72 0.00 44.95 1.82
1054 2349 7.946237 CACGTACACGGTTTTTATGTTTAGTAG 59.054 37.037 6.72 0.00 44.95 2.57
1055 2350 7.651704 ACGTACACGGTTTTTATGTTTAGTAGT 59.348 33.333 6.72 0.00 44.95 2.73
1090 2386 4.780815 TGTTTCCACAAAGACAGAGACAT 58.219 39.130 0.00 0.00 0.00 3.06
1212 2725 5.475909 CCCAAATCTCCAACCATCATATCTG 59.524 44.000 0.00 0.00 0.00 2.90
1220 2733 6.586344 TCCAACCATCATATCTGAAGTTCTC 58.414 40.000 4.17 0.00 32.55 2.87
1228 2741 6.950842 TCATATCTGAAGTTCTCAACACCAT 58.049 36.000 4.17 0.00 32.17 3.55
1713 3230 1.077858 GAAAGAGGCAGGAGCAGGG 60.078 63.158 0.00 0.00 44.61 4.45
1786 3304 0.036388 AAAGAGATTGCTCGCCGGAA 60.036 50.000 5.05 0.00 45.98 4.30
1907 3432 2.535331 GTCATTCTCGAGCTGGTTCTC 58.465 52.381 7.81 0.00 0.00 2.87
1973 3503 8.485976 TGCAGGTTAATTAAATAATTTGGTGC 57.514 30.769 0.00 8.61 37.16 5.01
1974 3504 8.317679 TGCAGGTTAATTAAATAATTTGGTGCT 58.682 29.630 0.00 0.00 37.16 4.40
2006 3536 0.458669 GAGCGAACGGGACTATTCCA 59.541 55.000 1.05 0.00 44.98 3.53
2011 3541 3.492137 GCGAACGGGACTATTCCATAGTT 60.492 47.826 1.05 4.35 45.64 2.24
2016 3546 6.158023 ACGGGACTATTCCATAGTTTGTAG 57.842 41.667 1.05 0.00 45.64 2.74
2018 3548 6.835488 ACGGGACTATTCCATAGTTTGTAGTA 59.165 38.462 1.05 0.00 45.64 1.82
2020 3550 7.014038 CGGGACTATTCCATAGTTTGTAGTACT 59.986 40.741 0.00 0.00 45.64 2.73
2051 3608 6.037786 ACTGTTTCGTCATAGAGATTTCCA 57.962 37.500 0.00 0.00 0.00 3.53
2110 3718 3.734293 GCGAGAAGTCTATGCTACGGTTT 60.734 47.826 0.00 0.00 0.00 3.27
2120 3728 1.349688 TGCTACGGTTTCAAGGGATGT 59.650 47.619 0.00 0.00 0.00 3.06
2132 3740 7.012421 GGTTTCAAGGGATGTGTAATACTGATC 59.988 40.741 0.00 0.00 0.00 2.92
2141 3749 9.330063 GGATGTGTAATACTGATCTTCATTGAA 57.670 33.333 0.00 0.00 0.00 2.69
2178 3786 0.107993 TGAGATTCTCGGGCTTGCAG 60.108 55.000 9.07 0.00 32.35 4.41
2193 3801 4.262420 GGCTTGCAGGAGGAACAAAATTTA 60.262 41.667 0.00 0.00 0.00 1.40
2474 4124 9.667107 TGTTTTGAGGATAATAGTAGGTTTCTG 57.333 33.333 0.00 0.00 0.00 3.02
2475 4125 9.886132 GTTTTGAGGATAATAGTAGGTTTCTGA 57.114 33.333 0.00 0.00 0.00 3.27
2487 4137 9.905713 ATAGTAGGTTTCTGATTATTTGCTTGA 57.094 29.630 0.00 0.00 0.00 3.02
2488 4138 8.045176 AGTAGGTTTCTGATTATTTGCTTGAC 57.955 34.615 0.00 0.00 0.00 3.18
2489 4139 7.885399 AGTAGGTTTCTGATTATTTGCTTGACT 59.115 33.333 0.00 0.00 0.00 3.41
2490 4140 7.530426 AGGTTTCTGATTATTTGCTTGACTT 57.470 32.000 0.00 0.00 0.00 3.01
2491 4141 7.955918 AGGTTTCTGATTATTTGCTTGACTTT 58.044 30.769 0.00 0.00 0.00 2.66
2492 4142 8.084684 AGGTTTCTGATTATTTGCTTGACTTTC 58.915 33.333 0.00 0.00 0.00 2.62
2493 4143 7.867403 GGTTTCTGATTATTTGCTTGACTTTCA 59.133 33.333 0.00 0.00 0.00 2.69
2494 4144 9.248291 GTTTCTGATTATTTGCTTGACTTTCAA 57.752 29.630 0.00 0.00 34.79 2.69
2583 4235 4.929211 GGGTCATTATTGTTTGGCTTCAAC 59.071 41.667 0.00 0.00 0.00 3.18
2585 4237 5.988561 GGTCATTATTGTTTGGCTTCAACAA 59.011 36.000 11.02 11.02 0.00 2.83
2586 4238 6.146021 GGTCATTATTGTTTGGCTTCAACAAG 59.854 38.462 13.17 3.69 30.86 3.16
2587 4239 6.922957 GTCATTATTGTTTGGCTTCAACAAGA 59.077 34.615 13.17 7.99 30.86 3.02
2588 4240 6.922957 TCATTATTGTTTGGCTTCAACAAGAC 59.077 34.615 13.17 0.00 38.30 3.01
2596 4248 5.437289 TGGCTTCAACAAGACAATGTTAG 57.563 39.130 0.00 0.00 45.41 2.34
2597 4249 5.129634 TGGCTTCAACAAGACAATGTTAGA 58.870 37.500 0.00 0.00 45.41 2.10
2599 4251 5.335191 GGCTTCAACAAGACAATGTTAGAGG 60.335 44.000 0.00 0.00 41.44 3.69
2600 4252 5.470098 GCTTCAACAAGACAATGTTAGAGGA 59.530 40.000 0.00 0.00 41.44 3.71
2601 4253 6.150140 GCTTCAACAAGACAATGTTAGAGGAT 59.850 38.462 0.00 0.00 41.44 3.24
2603 4255 7.009179 TCAACAAGACAATGTTAGAGGATCT 57.991 36.000 0.00 0.00 41.44 2.75
2673 4379 7.498570 ACATCTTATTTTTGCCAACAACAACAT 59.501 29.630 0.00 0.00 34.87 2.71
2674 4380 8.986847 CATCTTATTTTTGCCAACAACAACATA 58.013 29.630 0.00 0.00 34.87 2.29
2721 4428 5.914033 TCCCTAATCTCGTTATTGTGAAGG 58.086 41.667 0.00 0.00 0.00 3.46
2791 4525 3.000819 TTCGATCCCGGTGGTGCT 61.001 61.111 0.00 0.00 36.24 4.40
2800 4534 2.264794 GGTGGTGCTCGTAGGTGG 59.735 66.667 0.00 0.00 0.00 4.61
2801 4535 2.580601 GGTGGTGCTCGTAGGTGGT 61.581 63.158 0.00 0.00 0.00 4.16
2809 4543 0.323542 CTCGTAGGTGGTGAGGTCCT 60.324 60.000 0.00 0.00 35.60 3.85
2814 4548 1.539124 GGTGGTGAGGTCCTTCCCT 60.539 63.158 10.37 0.00 37.62 4.20
2844 4578 0.469144 GGTGATTGGTGGTGGTGGTT 60.469 55.000 0.00 0.00 0.00 3.67
2853 4587 2.224670 GGTGGTGGTGGTTGAGACATTA 60.225 50.000 0.00 0.00 0.00 1.90
2863 4597 6.016276 GGTGGTTGAGACATTACTTCATTGTT 60.016 38.462 0.00 0.00 0.00 2.83
2864 4598 7.174253 GGTGGTTGAGACATTACTTCATTGTTA 59.826 37.037 0.00 0.00 0.00 2.41
3189 4923 2.665603 GAGACTGGCTGGGGTCAC 59.334 66.667 0.00 0.00 35.18 3.67
3199 4933 2.691252 GGGGTCACAGGGTAGGGG 60.691 72.222 0.00 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.423892 CACTAAGAGAGTAGCGCCAGAA 59.576 50.000 2.29 0.00 35.64 3.02
5 6 1.066303 CCACTAAGAGAGTAGCGCCAG 59.934 57.143 2.29 0.00 35.64 4.85
10 11 4.645588 ACCATACACCACTAAGAGAGTAGC 59.354 45.833 0.00 0.00 35.64 3.58
18 19 4.253685 CAGGAACACCATACACCACTAAG 58.746 47.826 0.00 0.00 0.00 2.18
21 22 2.054799 ACAGGAACACCATACACCACT 58.945 47.619 0.00 0.00 0.00 4.00
30 31 3.556213 CCTCGTAATCAACAGGAACACCA 60.556 47.826 0.00 0.00 31.61 4.17
36 37 3.576982 AGAACACCTCGTAATCAACAGGA 59.423 43.478 0.00 0.00 33.25 3.86
39 40 7.789273 TTTTAAGAACACCTCGTAATCAACA 57.211 32.000 0.00 0.00 29.59 3.33
63 64 3.514645 ACGACGCGGTATAATCTGTTTT 58.485 40.909 12.47 0.00 0.00 2.43
67 68 3.839954 GCAAAACGACGCGGTATAATCTG 60.840 47.826 12.47 0.00 0.00 2.90
69 70 2.283351 AGCAAAACGACGCGGTATAATC 59.717 45.455 12.47 0.00 0.00 1.75
70 71 2.273557 AGCAAAACGACGCGGTATAAT 58.726 42.857 12.47 0.00 0.00 1.28
71 72 1.712401 AGCAAAACGACGCGGTATAA 58.288 45.000 12.47 0.00 0.00 0.98
72 73 1.390803 CAAGCAAAACGACGCGGTATA 59.609 47.619 12.47 0.00 0.00 1.47
73 74 0.165079 CAAGCAAAACGACGCGGTAT 59.835 50.000 12.47 0.00 0.00 2.73
76 77 1.298041 AACAAGCAAAACGACGCGG 60.298 52.632 12.47 0.00 0.00 6.46
83 85 3.245518 AGTTGGTCCAACAAGCAAAAC 57.754 42.857 31.59 6.95 45.66 2.43
85 87 5.172205 GTTTTAGTTGGTCCAACAAGCAAA 58.828 37.500 31.59 22.01 45.66 3.68
88 90 4.379339 TGTTTTAGTTGGTCCAACAAGC 57.621 40.909 31.59 21.12 45.66 4.01
95 97 7.266922 TGTTCTTACATGTTTTAGTTGGTCC 57.733 36.000 2.30 0.00 0.00 4.46
156 158 4.125703 TGGGAAAAGAAAGTAAACGCGTA 58.874 39.130 14.46 0.00 0.00 4.42
167 169 4.260866 CGCGTTTCTTACTGGGAAAAGAAA 60.261 41.667 0.00 6.23 45.01 2.52
181 183 1.529865 GTCCAAGTAAGCGCGTTTCTT 59.470 47.619 12.68 12.34 0.00 2.52
243 245 8.700439 ATTTAAATAGTTACTGGTGTTGGTGT 57.300 30.769 0.00 0.00 0.00 4.16
258 260 8.732746 AATTGCTACGTCTGGATTTAAATAGT 57.267 30.769 0.00 0.00 0.00 2.12
264 266 6.474140 TCCTAATTGCTACGTCTGGATTTA 57.526 37.500 0.00 0.00 0.00 1.40
313 315 4.974645 ATACAGTTGAACCTGAACCAGA 57.025 40.909 0.00 0.00 36.30 3.86
404 418 7.046652 CCAAATCTATGTGTCTCTGTCTCAAT 58.953 38.462 0.00 0.00 0.00 2.57
423 437 1.467342 GTAAGCACACCGGACCAAATC 59.533 52.381 9.46 0.00 0.00 2.17
451 465 7.750229 AATGAAACAGCAGAGAAGTTATTCA 57.250 32.000 0.00 0.00 37.94 2.57
452 466 8.909671 CAAAATGAAACAGCAGAGAAGTTATTC 58.090 33.333 0.00 0.00 35.52 1.75
453 467 7.383300 GCAAAATGAAACAGCAGAGAAGTTATT 59.617 33.333 0.00 0.00 0.00 1.40
454 468 6.865205 GCAAAATGAAACAGCAGAGAAGTTAT 59.135 34.615 0.00 0.00 0.00 1.89
455 469 6.183360 TGCAAAATGAAACAGCAGAGAAGTTA 60.183 34.615 0.00 0.00 0.00 2.24
456 470 5.045872 GCAAAATGAAACAGCAGAGAAGTT 58.954 37.500 0.00 0.00 0.00 2.66
457 471 4.098349 TGCAAAATGAAACAGCAGAGAAGT 59.902 37.500 0.00 0.00 0.00 3.01
458 472 4.613944 TGCAAAATGAAACAGCAGAGAAG 58.386 39.130 0.00 0.00 0.00 2.85
459 473 4.652421 TGCAAAATGAAACAGCAGAGAA 57.348 36.364 0.00 0.00 0.00 2.87
460 474 4.859304 ATGCAAAATGAAACAGCAGAGA 57.141 36.364 0.00 0.00 38.75 3.10
461 475 4.151689 CCAATGCAAAATGAAACAGCAGAG 59.848 41.667 0.00 0.00 38.75 3.35
462 476 4.059511 CCAATGCAAAATGAAACAGCAGA 58.940 39.130 0.00 0.00 38.75 4.26
463 477 3.810941 ACCAATGCAAAATGAAACAGCAG 59.189 39.130 0.00 0.00 38.75 4.24
464 478 3.560481 CACCAATGCAAAATGAAACAGCA 59.440 39.130 0.00 0.00 39.79 4.41
465 479 3.560896 ACACCAATGCAAAATGAAACAGC 59.439 39.130 0.00 0.00 0.00 4.40
466 480 5.738118 AACACCAATGCAAAATGAAACAG 57.262 34.783 0.00 0.00 0.00 3.16
467 481 6.037610 GGTTAACACCAATGCAAAATGAAACA 59.962 34.615 8.10 0.00 43.61 2.83
468 482 6.426327 GGTTAACACCAATGCAAAATGAAAC 58.574 36.000 8.10 0.00 43.61 2.78
469 483 5.235186 CGGTTAACACCAATGCAAAATGAAA 59.765 36.000 8.10 0.00 44.53 2.69
470 484 4.747108 CGGTTAACACCAATGCAAAATGAA 59.253 37.500 8.10 0.00 44.53 2.57
471 485 4.302455 CGGTTAACACCAATGCAAAATGA 58.698 39.130 8.10 0.00 44.53 2.57
472 486 3.120718 GCGGTTAACACCAATGCAAAATG 60.121 43.478 8.10 0.00 44.53 2.32
473 487 3.063485 GCGGTTAACACCAATGCAAAAT 58.937 40.909 8.10 0.00 44.53 1.82
474 488 2.159099 TGCGGTTAACACCAATGCAAAA 60.159 40.909 8.10 0.00 44.53 2.44
475 489 1.409064 TGCGGTTAACACCAATGCAAA 59.591 42.857 8.10 0.00 44.53 3.68
476 490 1.032794 TGCGGTTAACACCAATGCAA 58.967 45.000 8.10 0.00 44.53 4.08
477 491 1.000827 CTTGCGGTTAACACCAATGCA 60.001 47.619 8.10 4.59 44.53 3.96
478 492 1.668628 CCTTGCGGTTAACACCAATGC 60.669 52.381 8.10 2.06 44.53 3.56
479 493 1.883275 TCCTTGCGGTTAACACCAATG 59.117 47.619 8.10 7.08 44.53 2.82
480 494 2.279935 TCCTTGCGGTTAACACCAAT 57.720 45.000 8.10 0.00 44.53 3.16
481 495 1.677052 GTTCCTTGCGGTTAACACCAA 59.323 47.619 8.10 8.68 44.53 3.67
482 496 1.134037 AGTTCCTTGCGGTTAACACCA 60.134 47.619 8.10 0.53 44.53 4.17
483 497 1.534163 GAGTTCCTTGCGGTTAACACC 59.466 52.381 8.10 0.00 40.16 4.16
484 498 2.490991 AGAGTTCCTTGCGGTTAACAC 58.509 47.619 8.10 0.00 0.00 3.32
485 499 2.922740 AGAGTTCCTTGCGGTTAACA 57.077 45.000 8.10 0.00 0.00 2.41
486 500 5.642491 AGATTTAGAGTTCCTTGCGGTTAAC 59.358 40.000 0.00 0.00 0.00 2.01
487 501 5.801380 AGATTTAGAGTTCCTTGCGGTTAA 58.199 37.500 0.00 0.00 0.00 2.01
488 502 5.187186 AGAGATTTAGAGTTCCTTGCGGTTA 59.813 40.000 0.00 0.00 0.00 2.85
489 503 4.020128 AGAGATTTAGAGTTCCTTGCGGTT 60.020 41.667 0.00 0.00 0.00 4.44
490 504 3.515901 AGAGATTTAGAGTTCCTTGCGGT 59.484 43.478 0.00 0.00 0.00 5.68
491 505 4.130286 AGAGATTTAGAGTTCCTTGCGG 57.870 45.455 0.00 0.00 0.00 5.69
492 506 8.873215 TTATTAGAGATTTAGAGTTCCTTGCG 57.127 34.615 0.00 0.00 0.00 4.85
497 511 9.988815 TGCTGATTATTAGAGATTTAGAGTTCC 57.011 33.333 0.00 0.00 0.00 3.62
535 549 3.181426 TGGATAGCTACCGGTTATCTGGA 60.181 47.826 15.04 0.40 42.46 3.86
544 560 2.288273 GCTAGTTGTGGATAGCTACCGG 60.288 54.545 0.00 0.00 40.99 5.28
564 850 2.159627 CAGTTATGACTCACCCAAACGC 59.840 50.000 0.00 0.00 32.54 4.84
580 866 4.384098 CCTGAACCAGGCATATGTCAGTTA 60.384 45.833 10.50 2.32 45.13 2.24
582 868 2.092753 CCTGAACCAGGCATATGTCAGT 60.093 50.000 10.50 3.55 45.13 3.41
583 869 2.569059 CCTGAACCAGGCATATGTCAG 58.431 52.381 10.50 10.43 45.13 3.51
593 879 7.394880 CGACATATAGTTGAACCTGAACCAGG 61.395 46.154 11.19 11.19 44.45 4.45
594 880 5.520288 CGACATATAGTTGAACCTGAACCAG 59.480 44.000 0.00 0.00 33.04 4.00
621 911 9.073475 TGTTTTATTAGTTGGTCTAACAAGCAT 57.927 29.630 1.61 0.00 40.80 3.79
670 966 7.093992 ACTCTTAACAGTCTGTATGAAGAAGC 58.906 38.462 18.41 0.00 29.32 3.86
679 975 8.632906 AGTAAGCTTACTCTTAACAGTCTGTA 57.367 34.615 29.48 0.00 39.72 2.74
695 991 4.282449 GGGCCCAAAAGAAAAGTAAGCTTA 59.718 41.667 19.95 0.86 33.95 3.09
696 992 3.071023 GGGCCCAAAAGAAAAGTAAGCTT 59.929 43.478 19.95 3.48 36.30 3.74
697 993 2.632996 GGGCCCAAAAGAAAAGTAAGCT 59.367 45.455 19.95 0.00 0.00 3.74
717 1013 2.511600 CGTTCGCTGGCTAAGGGG 60.512 66.667 4.63 0.00 39.31 4.79
718 1014 1.359459 GAACGTTCGCTGGCTAAGGG 61.359 60.000 13.36 0.00 40.19 3.95
719 1015 1.683790 CGAACGTTCGCTGGCTAAGG 61.684 60.000 34.54 7.86 44.26 2.69
720 1016 1.702299 CGAACGTTCGCTGGCTAAG 59.298 57.895 34.54 8.59 44.26 2.18
721 1017 3.850923 CGAACGTTCGCTGGCTAA 58.149 55.556 34.54 0.00 44.26 3.09
734 1030 0.255033 ATAAACCCCTCCTGGCGAAC 59.745 55.000 0.00 0.00 0.00 3.95
735 1031 0.254747 CATAAACCCCTCCTGGCGAA 59.745 55.000 0.00 0.00 0.00 4.70
736 1032 0.912487 ACATAAACCCCTCCTGGCGA 60.912 55.000 0.00 0.00 0.00 5.54
737 1033 0.748005 CACATAAACCCCTCCTGGCG 60.748 60.000 0.00 0.00 0.00 5.69
738 1034 0.331616 ACACATAAACCCCTCCTGGC 59.668 55.000 0.00 0.00 0.00 4.85
740 1036 1.955208 GCCACACATAAACCCCTCCTG 60.955 57.143 0.00 0.00 0.00 3.86
741 1037 0.331616 GCCACACATAAACCCCTCCT 59.668 55.000 0.00 0.00 0.00 3.69
742 1038 1.029947 CGCCACACATAAACCCCTCC 61.030 60.000 0.00 0.00 0.00 4.30
743 1039 0.322187 ACGCCACACATAAACCCCTC 60.322 55.000 0.00 0.00 0.00 4.30
744 1040 0.608035 CACGCCACACATAAACCCCT 60.608 55.000 0.00 0.00 0.00 4.79
745 1041 1.591504 CCACGCCACACATAAACCCC 61.592 60.000 0.00 0.00 0.00 4.95
746 1042 1.880186 CCACGCCACACATAAACCC 59.120 57.895 0.00 0.00 0.00 4.11
747 1043 1.211709 GCCACGCCACACATAAACC 59.788 57.895 0.00 0.00 0.00 3.27
748 1044 0.525761 ATGCCACGCCACACATAAAC 59.474 50.000 0.00 0.00 0.00 2.01
749 1045 1.252175 AATGCCACGCCACACATAAA 58.748 45.000 0.00 0.00 0.00 1.40
750 1046 1.252175 AAATGCCACGCCACACATAA 58.748 45.000 0.00 0.00 0.00 1.90
751 1047 1.201181 GAAAATGCCACGCCACACATA 59.799 47.619 0.00 0.00 0.00 2.29
753 1049 1.106351 AGAAAATGCCACGCCACACA 61.106 50.000 0.00 0.00 0.00 3.72
755 1051 0.313672 GAAGAAAATGCCACGCCACA 59.686 50.000 0.00 0.00 0.00 4.17
757 1053 0.597568 CTGAAGAAAATGCCACGCCA 59.402 50.000 0.00 0.00 0.00 5.69
759 1055 1.135575 CCTCTGAAGAAAATGCCACGC 60.136 52.381 0.00 0.00 0.00 5.34
760 1056 2.426522 TCCTCTGAAGAAAATGCCACG 58.573 47.619 0.00 0.00 0.00 4.94
761 1057 3.569701 TGTTCCTCTGAAGAAAATGCCAC 59.430 43.478 0.00 0.00 0.00 5.01
763 1059 4.381292 CCATGTTCCTCTGAAGAAAATGCC 60.381 45.833 11.97 0.00 37.55 4.40
764 1060 4.741342 CCATGTTCCTCTGAAGAAAATGC 58.259 43.478 11.97 0.00 37.55 3.56
766 1062 4.410099 TGCCATGTTCCTCTGAAGAAAAT 58.590 39.130 0.00 0.00 0.00 1.82
770 1066 3.726557 AATGCCATGTTCCTCTGAAGA 57.273 42.857 0.00 0.00 0.00 2.87
771 1067 4.461781 AGAAAATGCCATGTTCCTCTGAAG 59.538 41.667 3.93 0.00 0.00 3.02
773 1069 3.760151 CAGAAAATGCCATGTTCCTCTGA 59.240 43.478 3.93 0.00 32.58 3.27
774 1070 3.119245 CCAGAAAATGCCATGTTCCTCTG 60.119 47.826 3.93 0.00 0.00 3.35
775 1071 3.094572 CCAGAAAATGCCATGTTCCTCT 58.905 45.455 3.93 0.00 0.00 3.69
776 1072 2.417787 GCCAGAAAATGCCATGTTCCTC 60.418 50.000 3.93 0.00 0.00 3.71
777 1073 1.551883 GCCAGAAAATGCCATGTTCCT 59.448 47.619 3.93 0.00 0.00 3.36
778 1074 1.275856 TGCCAGAAAATGCCATGTTCC 59.724 47.619 3.93 0.00 0.00 3.62
779 1075 2.747396 TGCCAGAAAATGCCATGTTC 57.253 45.000 0.00 0.00 0.00 3.18
780 1076 3.488778 TTTGCCAGAAAATGCCATGTT 57.511 38.095 0.00 0.00 0.00 2.71
781 1077 3.488778 TTTTGCCAGAAAATGCCATGT 57.511 38.095 0.00 0.00 0.00 3.21
782 1078 3.816523 ACTTTTTGCCAGAAAATGCCATG 59.183 39.130 0.00 0.00 0.00 3.66
783 1079 4.089408 ACTTTTTGCCAGAAAATGCCAT 57.911 36.364 0.00 0.00 0.00 4.40
784 1080 3.557228 ACTTTTTGCCAGAAAATGCCA 57.443 38.095 0.00 0.00 0.00 4.92
785 1081 3.428534 CGTACTTTTTGCCAGAAAATGCC 59.571 43.478 0.00 0.00 0.00 4.40
786 1082 4.295051 TCGTACTTTTTGCCAGAAAATGC 58.705 39.130 0.00 0.00 0.00 3.56
787 1083 6.820470 TTTCGTACTTTTTGCCAGAAAATG 57.180 33.333 0.00 0.00 0.00 2.32
788 1084 6.073819 GCATTTCGTACTTTTTGCCAGAAAAT 60.074 34.615 0.00 0.00 31.29 1.82
789 1085 5.233263 GCATTTCGTACTTTTTGCCAGAAAA 59.767 36.000 0.00 0.00 31.29 2.29
790 1086 4.742659 GCATTTCGTACTTTTTGCCAGAAA 59.257 37.500 0.00 0.00 0.00 2.52
791 1087 4.295051 GCATTTCGTACTTTTTGCCAGAA 58.705 39.130 0.00 0.00 0.00 3.02
792 1088 3.305064 GGCATTTCGTACTTTTTGCCAGA 60.305 43.478 16.99 0.00 46.87 3.86
793 1089 2.986479 GGCATTTCGTACTTTTTGCCAG 59.014 45.455 16.99 0.00 46.87 4.85
794 1090 3.019933 GGCATTTCGTACTTTTTGCCA 57.980 42.857 16.99 0.00 46.87 4.92
796 1092 3.638484 AGTGGCATTTCGTACTTTTTGC 58.362 40.909 0.00 0.00 0.00 3.68
797 1093 5.108385 AGAGTGGCATTTCGTACTTTTTG 57.892 39.130 0.00 0.00 0.00 2.44
798 1094 4.215613 GGAGAGTGGCATTTCGTACTTTTT 59.784 41.667 0.00 0.00 0.00 1.94
799 1095 3.751698 GGAGAGTGGCATTTCGTACTTTT 59.248 43.478 0.00 0.00 0.00 2.27
800 1096 3.335579 GGAGAGTGGCATTTCGTACTTT 58.664 45.455 0.00 0.00 0.00 2.66
801 1097 2.354805 GGGAGAGTGGCATTTCGTACTT 60.355 50.000 0.00 0.00 0.00 2.24
802 1098 1.207329 GGGAGAGTGGCATTTCGTACT 59.793 52.381 0.00 0.00 0.00 2.73
803 1099 1.653151 GGGAGAGTGGCATTTCGTAC 58.347 55.000 0.00 0.00 0.00 3.67
804 1100 0.539986 GGGGAGAGTGGCATTTCGTA 59.460 55.000 0.00 0.00 0.00 3.43
805 1101 1.299976 GGGGAGAGTGGCATTTCGT 59.700 57.895 0.00 0.00 0.00 3.85
806 1102 1.452108 GGGGGAGAGTGGCATTTCG 60.452 63.158 0.00 0.00 0.00 3.46
807 1103 0.394899 CTGGGGGAGAGTGGCATTTC 60.395 60.000 0.00 0.00 0.00 2.17
808 1104 1.693640 CTGGGGGAGAGTGGCATTT 59.306 57.895 0.00 0.00 0.00 2.32
809 1105 2.988839 GCTGGGGGAGAGTGGCATT 61.989 63.158 0.00 0.00 0.00 3.56
810 1106 3.415087 GCTGGGGGAGAGTGGCAT 61.415 66.667 0.00 0.00 0.00 4.40
813 1109 3.003173 TTCGCTGGGGGAGAGTGG 61.003 66.667 0.00 0.00 0.00 4.00
814 1110 2.266055 GTTCGCTGGGGGAGAGTG 59.734 66.667 0.00 0.00 0.00 3.51
815 1111 3.382832 CGTTCGCTGGGGGAGAGT 61.383 66.667 0.00 0.00 0.00 3.24
816 1112 3.358076 GACGTTCGCTGGGGGAGAG 62.358 68.421 0.00 0.00 0.00 3.20
817 1113 3.379445 GACGTTCGCTGGGGGAGA 61.379 66.667 0.00 0.00 0.00 3.71
818 1114 3.649277 CTGACGTTCGCTGGGGGAG 62.649 68.421 0.00 0.00 0.00 4.30
819 1115 3.691342 CTGACGTTCGCTGGGGGA 61.691 66.667 0.00 0.00 0.00 4.81
822 1118 4.680237 TGGCTGACGTTCGCTGGG 62.680 66.667 9.41 0.00 0.00 4.45
823 1119 2.842394 ATCTGGCTGACGTTCGCTGG 62.842 60.000 9.41 4.08 0.00 4.85
824 1120 0.179137 TATCTGGCTGACGTTCGCTG 60.179 55.000 9.41 4.36 0.00 5.18
825 1121 0.530744 TTATCTGGCTGACGTTCGCT 59.469 50.000 9.41 0.00 0.00 4.93
826 1122 0.924090 CTTATCTGGCTGACGTTCGC 59.076 55.000 0.00 0.00 0.00 4.70
827 1123 2.561733 TCTTATCTGGCTGACGTTCG 57.438 50.000 0.00 0.00 0.00 3.95
828 1124 4.271291 GGAAATCTTATCTGGCTGACGTTC 59.729 45.833 0.00 0.00 0.00 3.95
829 1125 4.192317 GGAAATCTTATCTGGCTGACGTT 58.808 43.478 0.00 0.00 0.00 3.99
830 1126 3.738281 CGGAAATCTTATCTGGCTGACGT 60.738 47.826 0.00 0.00 0.00 4.34
831 1127 2.797156 CGGAAATCTTATCTGGCTGACG 59.203 50.000 0.00 0.00 0.00 4.35
832 1128 2.545946 GCGGAAATCTTATCTGGCTGAC 59.454 50.000 0.00 0.00 0.00 3.51
833 1129 2.435805 AGCGGAAATCTTATCTGGCTGA 59.564 45.455 0.00 0.00 0.00 4.26
834 1130 2.843701 AGCGGAAATCTTATCTGGCTG 58.156 47.619 0.00 0.00 0.00 4.85
835 1131 3.135530 AGAAGCGGAAATCTTATCTGGCT 59.864 43.478 0.00 0.00 0.00 4.75
836 1132 3.471680 AGAAGCGGAAATCTTATCTGGC 58.528 45.455 0.00 0.00 0.00 4.85
837 1133 6.317391 AGAAAAGAAGCGGAAATCTTATCTGG 59.683 38.462 0.00 0.00 34.90 3.86
838 1134 7.185453 CAGAAAAGAAGCGGAAATCTTATCTG 58.815 38.462 0.00 0.00 34.90 2.90
839 1135 6.317391 CCAGAAAAGAAGCGGAAATCTTATCT 59.683 38.462 0.00 0.00 34.90 1.98
840 1136 6.458888 CCCAGAAAAGAAGCGGAAATCTTATC 60.459 42.308 0.00 0.00 34.90 1.75
841 1137 5.358160 CCCAGAAAAGAAGCGGAAATCTTAT 59.642 40.000 0.00 0.00 34.90 1.73
842 1138 4.700213 CCCAGAAAAGAAGCGGAAATCTTA 59.300 41.667 0.00 0.00 34.90 2.10
843 1139 3.507622 CCCAGAAAAGAAGCGGAAATCTT 59.492 43.478 0.00 0.00 37.49 2.40
844 1140 3.084786 CCCAGAAAAGAAGCGGAAATCT 58.915 45.455 0.00 0.00 0.00 2.40
845 1141 2.164422 CCCCAGAAAAGAAGCGGAAATC 59.836 50.000 0.00 0.00 0.00 2.17
846 1142 2.171003 CCCCAGAAAAGAAGCGGAAAT 58.829 47.619 0.00 0.00 0.00 2.17
847 1143 1.144093 TCCCCAGAAAAGAAGCGGAAA 59.856 47.619 0.00 0.00 0.00 3.13
848 1144 0.768622 TCCCCAGAAAAGAAGCGGAA 59.231 50.000 0.00 0.00 0.00 4.30
849 1145 0.324943 CTCCCCAGAAAAGAAGCGGA 59.675 55.000 0.00 0.00 0.00 5.54
850 1146 0.678048 CCTCCCCAGAAAAGAAGCGG 60.678 60.000 0.00 0.00 0.00 5.52
851 1147 0.324943 TCCTCCCCAGAAAAGAAGCG 59.675 55.000 0.00 0.00 0.00 4.68
852 1148 2.163509 GTTCCTCCCCAGAAAAGAAGC 58.836 52.381 0.00 0.00 0.00 3.86
853 1149 3.149981 GTGTTCCTCCCCAGAAAAGAAG 58.850 50.000 0.00 0.00 0.00 2.85
854 1150 2.486548 CGTGTTCCTCCCCAGAAAAGAA 60.487 50.000 0.00 0.00 0.00 2.52
857 1153 1.133363 TCGTGTTCCTCCCCAGAAAA 58.867 50.000 0.00 0.00 0.00 2.29
862 1158 1.946984 ACTAATCGTGTTCCTCCCCA 58.053 50.000 0.00 0.00 0.00 4.96
863 1159 2.364647 CCTACTAATCGTGTTCCTCCCC 59.635 54.545 0.00 0.00 0.00 4.81
866 1162 7.690952 ATCTATCCTACTAATCGTGTTCCTC 57.309 40.000 0.00 0.00 0.00 3.71
901 2195 6.092259 ACTGGTTATTACGTTGAGCTGATTTC 59.908 38.462 0.00 0.00 0.00 2.17
915 2209 9.555727 TGGATTTGAATAGCTACTGGTTATTAC 57.444 33.333 0.00 0.00 32.72 1.89
940 2234 1.265095 GTGTGTGATGTGCCAAGTCTG 59.735 52.381 0.00 0.00 0.00 3.51
944 2238 2.867287 TTTGTGTGTGATGTGCCAAG 57.133 45.000 0.00 0.00 0.00 3.61
945 2239 3.599730 TTTTTGTGTGTGATGTGCCAA 57.400 38.095 0.00 0.00 0.00 4.52
974 2269 4.513442 TGACCCGTTCTCATTCCTAATTG 58.487 43.478 0.00 0.00 0.00 2.32
984 2279 2.026729 TGCCATATTTGACCCGTTCTCA 60.027 45.455 0.00 0.00 0.00 3.27
986 2281 2.799126 TGCCATATTTGACCCGTTCT 57.201 45.000 0.00 0.00 0.00 3.01
988 2283 1.408702 GCATGCCATATTTGACCCGTT 59.591 47.619 6.36 0.00 0.00 4.44
992 2287 1.342174 CCAGGCATGCCATATTTGACC 59.658 52.381 37.18 7.34 38.92 4.02
1009 2304 3.741344 CGTGTCTCTTTAACCTGAACCAG 59.259 47.826 0.00 0.00 0.00 4.00
1010 2305 3.133362 ACGTGTCTCTTTAACCTGAACCA 59.867 43.478 0.00 0.00 0.00 3.67
1012 2307 5.174579 GTGTACGTGTCTCTTTAACCTGAAC 59.825 44.000 0.00 0.00 0.00 3.18
1028 2323 6.648502 ACTAAACATAAAAACCGTGTACGTG 58.351 36.000 0.00 0.00 37.74 4.49
1029 2324 6.843069 ACTAAACATAAAAACCGTGTACGT 57.157 33.333 3.57 0.00 37.74 3.57
1059 2354 8.859090 TCTGTCTTTGTGGAAACAAATATGAAT 58.141 29.630 4.62 0.00 46.06 2.57
1065 2360 5.652014 TGTCTCTGTCTTTGTGGAAACAAAT 59.348 36.000 4.62 0.00 46.06 2.32
1090 2386 7.228108 CGGACCAAGAGTATAGACAAGTGTATA 59.772 40.741 0.00 0.00 0.00 1.47
1212 2725 3.125316 CGGCTTATGGTGTTGAGAACTTC 59.875 47.826 0.00 0.00 0.00 3.01
1220 2733 1.715585 CGCTCGGCTTATGGTGTTG 59.284 57.895 0.00 0.00 0.00 3.33
1394 2908 1.296715 GAAGTCACAGGGTCGGCAT 59.703 57.895 0.00 0.00 0.00 4.40
1621 3138 0.979709 CTCCTGAGGGATCACCAGCA 60.980 60.000 0.00 3.01 43.89 4.41
1652 3169 2.188207 GCCTCCTTCCGAAGCTCC 59.812 66.667 2.27 0.00 0.00 4.70
1707 3224 2.301738 GGTAGAACCAGGCCCTGCT 61.302 63.158 4.81 0.00 38.42 4.24
1713 3230 0.672711 GTGGAACGGTAGAACCAGGC 60.673 60.000 0.00 0.00 38.47 4.85
1801 3319 2.279120 GATCAGTGCTCTCGCCGG 60.279 66.667 0.00 0.00 34.43 6.13
1806 3324 1.202510 AGCGAATGGATCAGTGCTCTC 60.203 52.381 0.00 0.00 0.00 3.20
1807 3325 0.829333 AGCGAATGGATCAGTGCTCT 59.171 50.000 0.00 0.00 0.00 4.09
1907 3432 0.169672 CTTTGCAGCATCAACCTCCG 59.830 55.000 0.00 0.00 0.00 4.63
1963 3493 7.901029 TCATTACCAAATTGAGCACCAAATTA 58.099 30.769 0.00 0.00 38.43 1.40
1964 3494 6.767456 TCATTACCAAATTGAGCACCAAATT 58.233 32.000 0.00 0.00 38.43 1.82
1965 3495 6.357579 TCATTACCAAATTGAGCACCAAAT 57.642 33.333 0.00 0.00 38.43 2.32
1966 3496 5.782047 CTCATTACCAAATTGAGCACCAAA 58.218 37.500 0.00 0.00 38.43 3.28
1967 3497 4.321899 GCTCATTACCAAATTGAGCACCAA 60.322 41.667 16.80 0.00 41.21 3.67
1968 3498 3.193267 GCTCATTACCAAATTGAGCACCA 59.807 43.478 16.80 0.00 41.21 4.17
1969 3499 3.731867 CGCTCATTACCAAATTGAGCACC 60.732 47.826 20.27 0.00 41.40 5.01
1970 3500 3.126858 TCGCTCATTACCAAATTGAGCAC 59.873 43.478 20.27 0.00 41.40 4.40
1971 3501 3.342719 TCGCTCATTACCAAATTGAGCA 58.657 40.909 20.27 8.06 41.40 4.26
1972 3502 4.098416 GTTCGCTCATTACCAAATTGAGC 58.902 43.478 12.81 12.81 39.84 4.26
1973 3503 4.334443 CGTTCGCTCATTACCAAATTGAG 58.666 43.478 0.00 0.00 0.00 3.02
1974 3504 3.126171 CCGTTCGCTCATTACCAAATTGA 59.874 43.478 0.00 0.00 0.00 2.57
2023 3553 9.784680 GAAATCTCTATGACGAAACAGTAGTAA 57.215 33.333 0.00 0.00 0.00 2.24
2077 3679 9.621629 AGCATAGACTTCTCGCTATATAATACT 57.378 33.333 2.07 0.00 34.35 2.12
2080 3682 8.552865 CGTAGCATAGACTTCTCGCTATATAAT 58.447 37.037 11.49 0.00 38.52 1.28
2110 3718 7.125659 TGAAGATCAGTATTACACATCCCTTGA 59.874 37.037 0.00 0.00 0.00 3.02
2120 3728 9.889128 TCACATTCAATGAAGATCAGTATTACA 57.111 29.630 3.79 0.00 0.00 2.41
2132 3740 3.064958 AGCAGCGATCACATTCAATGAAG 59.935 43.478 3.79 0.00 0.00 3.02
2141 3749 1.135112 TCAACGTAGCAGCGATCACAT 60.135 47.619 6.93 0.00 35.59 3.21
2143 3751 0.917259 CTCAACGTAGCAGCGATCAC 59.083 55.000 6.93 0.00 35.59 3.06
2178 3786 5.629435 CACGCTCTTTAAATTTTGTTCCTCC 59.371 40.000 0.00 0.00 0.00 4.30
2193 3801 5.864418 TTATACAGATACCCACGCTCTTT 57.136 39.130 0.00 0.00 0.00 2.52
2232 3857 1.533625 TCCCCGCTTGATGTTTTCTG 58.466 50.000 0.00 0.00 0.00 3.02
2234 3859 2.033424 GCTATCCCCGCTTGATGTTTTC 59.967 50.000 0.00 0.00 0.00 2.29
2448 4098 9.667107 CAGAAACCTACTATTATCCTCAAAACA 57.333 33.333 0.00 0.00 0.00 2.83
2449 4099 9.886132 TCAGAAACCTACTATTATCCTCAAAAC 57.114 33.333 0.00 0.00 0.00 2.43
2461 4111 9.905713 TCAAGCAAATAATCAGAAACCTACTAT 57.094 29.630 0.00 0.00 0.00 2.12
2462 4112 9.162764 GTCAAGCAAATAATCAGAAACCTACTA 57.837 33.333 0.00 0.00 0.00 1.82
2463 4113 7.885399 AGTCAAGCAAATAATCAGAAACCTACT 59.115 33.333 0.00 0.00 0.00 2.57
2464 4114 8.045176 AGTCAAGCAAATAATCAGAAACCTAC 57.955 34.615 0.00 0.00 0.00 3.18
2465 4115 8.635765 AAGTCAAGCAAATAATCAGAAACCTA 57.364 30.769 0.00 0.00 0.00 3.08
2466 4116 7.530426 AAGTCAAGCAAATAATCAGAAACCT 57.470 32.000 0.00 0.00 0.00 3.50
2467 4117 7.867403 TGAAAGTCAAGCAAATAATCAGAAACC 59.133 33.333 0.00 0.00 0.00 3.27
2468 4118 8.801715 TGAAAGTCAAGCAAATAATCAGAAAC 57.198 30.769 0.00 0.00 0.00 2.78
2469 4119 9.814899 TTTGAAAGTCAAGCAAATAATCAGAAA 57.185 25.926 0.00 0.00 37.70 2.52
2470 4120 9.248291 GTTTGAAAGTCAAGCAAATAATCAGAA 57.752 29.630 0.00 0.00 37.70 3.02
2471 4121 8.412456 TGTTTGAAAGTCAAGCAAATAATCAGA 58.588 29.630 5.21 0.00 43.02 3.27
2472 4122 8.578308 TGTTTGAAAGTCAAGCAAATAATCAG 57.422 30.769 5.21 0.00 43.02 2.90
2571 4223 4.432712 ACATTGTCTTGTTGAAGCCAAAC 58.567 39.130 0.00 0.00 31.17 2.93
2583 4235 8.600449 GGAATAGATCCTCTAACATTGTCTTG 57.400 38.462 0.00 0.00 45.56 3.02
2605 4257 7.888021 ACATGTGGATCTAACAAAACTATGGAA 59.112 33.333 0.00 0.00 0.00 3.53
2606 4258 7.336679 CACATGTGGATCTAACAAAACTATGGA 59.663 37.037 18.51 0.00 0.00 3.41
2607 4259 7.121168 ACACATGTGGATCTAACAAAACTATGG 59.879 37.037 28.64 0.00 34.19 2.74
2608 4260 8.044060 ACACATGTGGATCTAACAAAACTATG 57.956 34.615 28.64 0.00 34.19 2.23
2609 4261 7.336931 GGACACATGTGGATCTAACAAAACTAT 59.663 37.037 28.64 2.06 34.19 2.12
2610 4262 6.653320 GGACACATGTGGATCTAACAAAACTA 59.347 38.462 28.64 0.00 34.19 2.24
2782 4516 2.126071 CACCTACGAGCACCACCG 60.126 66.667 0.00 0.00 0.00 4.94
2791 4525 0.113776 AAGGACCTCACCACCTACGA 59.886 55.000 0.00 0.00 33.34 3.43
2831 4565 1.275421 TGTCTCAACCACCACCACCA 61.275 55.000 0.00 0.00 0.00 4.17
2844 4578 6.472016 TGCCTAACAATGAAGTAATGTCTCA 58.528 36.000 0.00 0.00 0.00 3.27
2853 4587 0.804989 GCGCTGCCTAACAATGAAGT 59.195 50.000 0.00 0.00 0.00 3.01
2863 4597 3.342370 CTCGACACTGCGCTGCCTA 62.342 63.158 14.80 0.00 0.00 3.93
2864 4598 4.731612 CTCGACACTGCGCTGCCT 62.732 66.667 14.80 0.00 0.00 4.75
3164 4898 2.997897 AGCCAGTCTCGGTGGACC 60.998 66.667 0.00 0.00 37.23 4.46
3176 4910 4.039092 CCCTGTGACCCCAGCCAG 62.039 72.222 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.