Multiple sequence alignment - TraesCS7B01G260400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G260400 chr7B 100.000 5743 0 0 1 5743 480690428 480696170 0.000000e+00 10606.0
1 TraesCS7B01G260400 chr7B 88.925 623 55 10 5130 5743 74585721 74586338 0.000000e+00 756.0
2 TraesCS7B01G260400 chr7B 86.177 463 47 10 4172 4621 657344610 657345068 8.650000e-133 484.0
3 TraesCS7B01G260400 chr7B 82.212 624 51 26 3508 4118 657344038 657344614 3.110000e-132 483.0
4 TraesCS7B01G260400 chr7B 87.124 233 21 8 4727 4957 657345120 657345345 7.380000e-64 255.0
5 TraesCS7B01G260400 chr7B 92.982 57 4 0 4383 4439 376934556 376934500 3.690000e-12 84.2
6 TraesCS7B01G260400 chr7D 94.398 4748 178 34 372 5067 458722686 458727397 0.000000e+00 7214.0
7 TraesCS7B01G260400 chr7D 87.678 633 53 17 5130 5742 214106959 214107586 0.000000e+00 713.0
8 TraesCS7B01G260400 chr7D 100.000 71 0 0 5058 5128 458727818 458727888 1.300000e-26 132.0
9 TraesCS7B01G260400 chr7A 92.499 3506 172 45 425 3855 541387410 541383921 0.000000e+00 4933.0
10 TraesCS7B01G260400 chr7A 91.501 753 42 13 4303 5040 541383534 541382789 0.000000e+00 1016.0
11 TraesCS7B01G260400 chr7A 84.615 468 42 14 4168 4624 677843442 677843890 6.830000e-119 438.0
12 TraesCS7B01G260400 chr7A 84.197 386 29 12 3900 4259 541383913 541383534 4.260000e-91 346.0
13 TraesCS7B01G260400 chr7A 86.345 249 24 9 4727 4974 677843939 677844178 4.410000e-66 263.0
14 TraesCS7B01G260400 chr7A 90.761 184 14 1 3896 4076 677842177 677842360 5.750000e-60 243.0
15 TraesCS7B01G260400 chr1B 90.276 617 42 12 5132 5743 264764290 264764893 0.000000e+00 791.0
16 TraesCS7B01G260400 chr5D 89.423 624 49 10 5131 5743 550983990 550983373 0.000000e+00 771.0
17 TraesCS7B01G260400 chr5D 87.264 636 54 18 5130 5743 440968176 440967546 0.000000e+00 701.0
18 TraesCS7B01G260400 chr5D 82.353 85 14 1 4348 4431 327524413 327524497 7.980000e-09 73.1
19 TraesCS7B01G260400 chr5A 88.960 625 49 9 5129 5743 36023128 36023742 0.000000e+00 754.0
20 TraesCS7B01G260400 chr5A 82.558 86 15 0 4352 4437 429170138 429170053 6.170000e-10 76.8
21 TraesCS7B01G260400 chr5A 100.000 28 0 0 1888 1915 598242644 598242671 1.000000e-02 52.8
22 TraesCS7B01G260400 chr3D 88.782 624 49 14 5132 5743 132927630 132928244 0.000000e+00 745.0
23 TraesCS7B01G260400 chr1D 87.717 635 53 17 5130 5743 329674004 329673374 0.000000e+00 717.0
24 TraesCS7B01G260400 chr5B 86.998 623 64 12 5132 5743 488827705 488828321 0.000000e+00 686.0
25 TraesCS7B01G260400 chr5B 83.750 80 13 0 4352 4431 380817040 380817119 6.170000e-10 76.8
26 TraesCS7B01G260400 chr2A 84.615 104 12 4 4355 4456 4978891 4978790 3.660000e-17 100.0
27 TraesCS7B01G260400 chr2D 82.857 105 12 6 4355 4456 6708217 6708318 7.930000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G260400 chr7B 480690428 480696170 5742 False 10606.000000 10606 100.000000 1 5743 1 chr7B.!!$F2 5742
1 TraesCS7B01G260400 chr7B 74585721 74586338 617 False 756.000000 756 88.925000 5130 5743 1 chr7B.!!$F1 613
2 TraesCS7B01G260400 chr7B 657344038 657345345 1307 False 407.333333 484 85.171000 3508 4957 3 chr7B.!!$F3 1449
3 TraesCS7B01G260400 chr7D 458722686 458727888 5202 False 3673.000000 7214 97.199000 372 5128 2 chr7D.!!$F2 4756
4 TraesCS7B01G260400 chr7D 214106959 214107586 627 False 713.000000 713 87.678000 5130 5742 1 chr7D.!!$F1 612
5 TraesCS7B01G260400 chr7A 541382789 541387410 4621 True 2098.333333 4933 89.399000 425 5040 3 chr7A.!!$R1 4615
6 TraesCS7B01G260400 chr7A 677842177 677844178 2001 False 314.666667 438 87.240333 3896 4974 3 chr7A.!!$F1 1078
7 TraesCS7B01G260400 chr1B 264764290 264764893 603 False 791.000000 791 90.276000 5132 5743 1 chr1B.!!$F1 611
8 TraesCS7B01G260400 chr5D 550983373 550983990 617 True 771.000000 771 89.423000 5131 5743 1 chr5D.!!$R2 612
9 TraesCS7B01G260400 chr5D 440967546 440968176 630 True 701.000000 701 87.264000 5130 5743 1 chr5D.!!$R1 613
10 TraesCS7B01G260400 chr5A 36023128 36023742 614 False 754.000000 754 88.960000 5129 5743 1 chr5A.!!$F1 614
11 TraesCS7B01G260400 chr3D 132927630 132928244 614 False 745.000000 745 88.782000 5132 5743 1 chr3D.!!$F1 611
12 TraesCS7B01G260400 chr1D 329673374 329674004 630 True 717.000000 717 87.717000 5130 5743 1 chr1D.!!$R1 613
13 TraesCS7B01G260400 chr5B 488827705 488828321 616 False 686.000000 686 86.998000 5132 5743 1 chr5B.!!$F2 611

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 217 0.032952 TCGAGCGCTGGTTTTAGTGT 59.967 50.0 18.48 0.00 0.00 3.55 F
692 727 0.109504 GGAGAGAGAGTGTGCGTGTC 60.110 60.0 0.00 0.00 0.00 3.67 F
810 856 0.109873 CCAGCTCAAAGCAAAGCGAG 60.110 55.0 1.29 0.00 45.56 5.03 F
945 1039 0.178932 CTGATCGGATAGGTGGGGGA 60.179 60.0 0.00 0.00 0.00 4.81 F
961 1069 0.533531 GGGAGGGAACGTTCGTTGTT 60.534 55.0 21.34 5.40 0.00 2.83 F
1458 1568 0.534203 TCAACTCCAACCGCTTCACC 60.534 55.0 0.00 0.00 0.00 4.02 F
2034 2144 0.537188 ACCTATCGGACAACCAGCTG 59.463 55.0 6.78 6.78 35.59 4.24 F
3489 3599 0.179004 TCAGGCACCGGAACATTGTT 60.179 50.0 9.46 0.63 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 1961 0.035630 GCAGGCTGGTGATCTTCTGT 60.036 55.000 17.64 0.0 0.00 3.41 R
2418 2528 1.900016 CAGGTTCTGCAGCTTGCCA 60.900 57.895 9.47 0.0 44.23 4.92 R
2784 2894 0.689055 TGATGCTCAGGCTTGACAGT 59.311 50.000 0.00 0.0 39.59 3.55 R
2869 2979 0.880278 GACAGGTCAAGCGACTGCAA 60.880 55.000 0.00 0.0 46.23 4.08 R
2880 2990 1.375908 GCCATTGCTCGACAGGTCA 60.376 57.895 0.00 0.0 33.53 4.02 R
3348 3458 0.179187 CAGCTCTGTACACGACTCCG 60.179 60.000 0.00 0.0 42.50 4.63 R
3576 3686 0.178921 AGTCCAGGCTCCTGTTCTCA 60.179 55.000 14.27 0.0 42.15 3.27 R
5306 6984 0.164217 GCATGCACGCACCAAAATTG 59.836 50.000 14.21 0.0 0.00 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.142796 CAGAACAAACCGAACGCAC 57.857 52.632 0.00 0.00 0.00 5.34
19 20 0.375454 CAGAACAAACCGAACGCACA 59.625 50.000 0.00 0.00 0.00 4.57
20 21 0.655733 AGAACAAACCGAACGCACAG 59.344 50.000 0.00 0.00 0.00 3.66
21 22 0.653636 GAACAAACCGAACGCACAGA 59.346 50.000 0.00 0.00 0.00 3.41
22 23 0.655733 AACAAACCGAACGCACAGAG 59.344 50.000 0.00 0.00 0.00 3.35
23 24 0.461339 ACAAACCGAACGCACAGAGT 60.461 50.000 0.00 0.00 0.00 3.24
24 25 0.042188 CAAACCGAACGCACAGAGTG 60.042 55.000 0.00 0.00 36.51 3.51
25 26 0.179094 AAACCGAACGCACAGAGTGA 60.179 50.000 0.58 0.00 35.23 3.41
26 27 0.179094 AACCGAACGCACAGAGTGAA 60.179 50.000 0.58 0.00 35.23 3.18
27 28 0.033504 ACCGAACGCACAGAGTGAAT 59.966 50.000 0.58 0.00 35.23 2.57
28 29 1.271379 ACCGAACGCACAGAGTGAATA 59.729 47.619 0.58 0.00 35.23 1.75
29 30 1.654105 CCGAACGCACAGAGTGAATAC 59.346 52.381 0.58 0.00 35.23 1.89
30 31 2.596452 CGAACGCACAGAGTGAATACT 58.404 47.619 0.58 0.00 40.66 2.12
31 32 3.427098 CCGAACGCACAGAGTGAATACTA 60.427 47.826 0.58 0.00 37.25 1.82
32 33 3.786576 CGAACGCACAGAGTGAATACTAG 59.213 47.826 0.58 0.00 37.25 2.57
33 34 3.784701 ACGCACAGAGTGAATACTAGG 57.215 47.619 0.58 0.00 37.25 3.02
34 35 2.427453 ACGCACAGAGTGAATACTAGGG 59.573 50.000 0.58 0.00 37.25 3.53
35 36 2.799917 CGCACAGAGTGAATACTAGGGC 60.800 54.545 0.58 0.00 37.81 5.19
36 37 2.168521 GCACAGAGTGAATACTAGGGCA 59.831 50.000 0.58 0.00 39.75 5.36
37 38 3.786635 CACAGAGTGAATACTAGGGCAC 58.213 50.000 0.00 0.00 37.25 5.01
38 39 3.449018 CACAGAGTGAATACTAGGGCACT 59.551 47.826 0.00 0.00 43.67 4.40
39 40 4.081420 CACAGAGTGAATACTAGGGCACTT 60.081 45.833 0.00 0.00 41.30 3.16
40 41 5.127194 CACAGAGTGAATACTAGGGCACTTA 59.873 44.000 0.00 0.00 41.30 2.24
41 42 5.361285 ACAGAGTGAATACTAGGGCACTTAG 59.639 44.000 0.00 0.00 41.30 2.18
42 43 5.594725 CAGAGTGAATACTAGGGCACTTAGA 59.405 44.000 0.00 0.00 41.30 2.10
43 44 5.595133 AGAGTGAATACTAGGGCACTTAGAC 59.405 44.000 0.00 0.00 41.30 2.59
44 45 5.269991 AGTGAATACTAGGGCACTTAGACA 58.730 41.667 0.00 0.00 38.34 3.41
45 46 5.900123 AGTGAATACTAGGGCACTTAGACAT 59.100 40.000 0.00 0.00 38.34 3.06
46 47 7.067421 AGTGAATACTAGGGCACTTAGACATA 58.933 38.462 0.00 0.00 38.34 2.29
47 48 7.014422 AGTGAATACTAGGGCACTTAGACATAC 59.986 40.741 0.00 0.00 38.34 2.39
48 49 6.837048 TGAATACTAGGGCACTTAGACATACA 59.163 38.462 0.00 0.00 0.00 2.29
49 50 6.651975 ATACTAGGGCACTTAGACATACAC 57.348 41.667 0.00 0.00 0.00 2.90
50 51 4.350245 ACTAGGGCACTTAGACATACACA 58.650 43.478 0.00 0.00 0.00 3.72
51 52 4.962995 ACTAGGGCACTTAGACATACACAT 59.037 41.667 0.00 0.00 0.00 3.21
52 53 4.844349 AGGGCACTTAGACATACACATT 57.156 40.909 0.00 0.00 0.00 2.71
53 54 4.770795 AGGGCACTTAGACATACACATTC 58.229 43.478 0.00 0.00 0.00 2.67
54 55 3.555956 GGGCACTTAGACATACACATTCG 59.444 47.826 0.00 0.00 0.00 3.34
55 56 4.430007 GGCACTTAGACATACACATTCGA 58.570 43.478 0.00 0.00 0.00 3.71
56 57 4.868171 GGCACTTAGACATACACATTCGAA 59.132 41.667 0.00 0.00 0.00 3.71
57 58 5.350365 GGCACTTAGACATACACATTCGAAA 59.650 40.000 0.00 0.00 0.00 3.46
58 59 6.455646 GGCACTTAGACATACACATTCGAAAG 60.456 42.308 0.00 0.00 0.00 2.62
59 60 6.310467 GCACTTAGACATACACATTCGAAAGA 59.690 38.462 7.49 0.00 39.20 2.52
60 61 7.010552 GCACTTAGACATACACATTCGAAAGAT 59.989 37.037 7.49 0.00 41.60 2.40
61 62 8.535592 CACTTAGACATACACATTCGAAAGATC 58.464 37.037 7.49 0.00 41.60 2.75
62 63 8.251026 ACTTAGACATACACATTCGAAAGATCA 58.749 33.333 7.49 0.00 41.60 2.92
63 64 9.254133 CTTAGACATACACATTCGAAAGATCAT 57.746 33.333 7.49 0.00 41.60 2.45
64 65 9.599866 TTAGACATACACATTCGAAAGATCATT 57.400 29.630 7.49 0.00 41.60 2.57
65 66 8.498054 AGACATACACATTCGAAAGATCATTT 57.502 30.769 7.49 0.00 41.60 2.32
66 67 8.393366 AGACATACACATTCGAAAGATCATTTG 58.607 33.333 7.49 0.00 41.60 2.32
67 68 7.475015 ACATACACATTCGAAAGATCATTTGG 58.525 34.615 7.49 0.00 41.60 3.28
68 69 5.964958 ACACATTCGAAAGATCATTTGGT 57.035 34.783 7.49 0.00 41.60 3.67
69 70 5.702865 ACACATTCGAAAGATCATTTGGTG 58.297 37.500 7.49 0.32 41.60 4.17
70 71 5.241506 ACACATTCGAAAGATCATTTGGTGT 59.758 36.000 7.49 0.94 41.60 4.16
71 72 6.151691 CACATTCGAAAGATCATTTGGTGTT 58.848 36.000 7.49 0.00 41.60 3.32
72 73 6.088483 CACATTCGAAAGATCATTTGGTGTTG 59.912 38.462 7.49 0.00 41.60 3.33
73 74 6.016360 ACATTCGAAAGATCATTTGGTGTTGA 60.016 34.615 7.49 0.00 41.60 3.18
74 75 6.384258 TTCGAAAGATCATTTGGTGTTGAA 57.616 33.333 0.00 0.00 41.60 2.69
75 76 6.384258 TCGAAAGATCATTTGGTGTTGAAA 57.616 33.333 0.00 0.00 33.31 2.69
76 77 6.980593 TCGAAAGATCATTTGGTGTTGAAAT 58.019 32.000 0.00 0.00 33.31 2.17
77 78 8.105097 TCGAAAGATCATTTGGTGTTGAAATA 57.895 30.769 0.00 0.00 33.31 1.40
78 79 8.572185 TCGAAAGATCATTTGGTGTTGAAATAA 58.428 29.630 0.00 0.00 33.31 1.40
79 80 8.638565 CGAAAGATCATTTGGTGTTGAAATAAC 58.361 33.333 0.00 0.00 0.00 1.89
80 81 9.474920 GAAAGATCATTTGGTGTTGAAATAACA 57.525 29.630 0.00 0.00 0.00 2.41
81 82 9.480053 AAAGATCATTTGGTGTTGAAATAACAG 57.520 29.630 0.00 0.00 0.00 3.16
82 83 8.408043 AGATCATTTGGTGTTGAAATAACAGA 57.592 30.769 0.00 0.00 0.00 3.41
83 84 8.517878 AGATCATTTGGTGTTGAAATAACAGAG 58.482 33.333 0.00 0.00 0.00 3.35
84 85 6.446318 TCATTTGGTGTTGAAATAACAGAGC 58.554 36.000 0.00 0.00 0.00 4.09
85 86 6.265196 TCATTTGGTGTTGAAATAACAGAGCT 59.735 34.615 0.00 0.00 0.00 4.09
86 87 5.437289 TTGGTGTTGAAATAACAGAGCTG 57.563 39.130 0.00 0.00 0.00 4.24
87 88 4.713553 TGGTGTTGAAATAACAGAGCTGA 58.286 39.130 4.21 0.00 0.00 4.26
88 89 5.129634 TGGTGTTGAAATAACAGAGCTGAA 58.870 37.500 4.21 0.00 0.00 3.02
89 90 5.592282 TGGTGTTGAAATAACAGAGCTGAAA 59.408 36.000 4.21 0.00 0.00 2.69
90 91 5.915196 GGTGTTGAAATAACAGAGCTGAAAC 59.085 40.000 4.21 0.00 0.00 2.78
91 92 6.238759 GGTGTTGAAATAACAGAGCTGAAACT 60.239 38.462 4.21 0.00 0.00 2.66
92 93 7.196331 GTGTTGAAATAACAGAGCTGAAACTT 58.804 34.615 4.21 0.00 0.00 2.66
93 94 7.166473 GTGTTGAAATAACAGAGCTGAAACTTG 59.834 37.037 4.21 0.00 0.00 3.16
94 95 6.942532 TGAAATAACAGAGCTGAAACTTGT 57.057 33.333 4.21 0.00 0.00 3.16
95 96 7.333528 TGAAATAACAGAGCTGAAACTTGTT 57.666 32.000 4.21 0.00 0.00 2.83
96 97 7.771183 TGAAATAACAGAGCTGAAACTTGTTT 58.229 30.769 4.21 0.00 0.00 2.83
97 98 7.701924 TGAAATAACAGAGCTGAAACTTGTTTG 59.298 33.333 4.21 0.00 0.00 2.93
98 99 4.376340 AACAGAGCTGAAACTTGTTTGG 57.624 40.909 4.21 0.00 0.00 3.28
99 100 2.099756 ACAGAGCTGAAACTTGTTTGGC 59.900 45.455 4.21 7.79 0.00 4.52
100 101 1.683385 AGAGCTGAAACTTGTTTGGCC 59.317 47.619 3.27 0.00 0.00 5.36
101 102 1.408702 GAGCTGAAACTTGTTTGGCCA 59.591 47.619 0.00 0.00 0.00 5.36
102 103 1.830477 AGCTGAAACTTGTTTGGCCAA 59.170 42.857 16.05 16.05 0.00 4.52
103 104 2.159057 AGCTGAAACTTGTTTGGCCAAG 60.159 45.455 19.48 9.65 45.83 3.61
104 105 2.204237 CTGAAACTTGTTTGGCCAAGC 58.796 47.619 24.17 24.17 44.55 4.01
105 106 1.552337 TGAAACTTGTTTGGCCAAGCA 59.448 42.857 28.89 28.89 44.55 3.91
106 107 2.027745 TGAAACTTGTTTGGCCAAGCAA 60.028 40.909 35.98 35.98 44.55 3.91
109 110 1.828768 TTGTTTGGCCAAGCAAGGG 59.171 52.632 35.44 0.00 36.76 3.95
110 111 0.689080 TTGTTTGGCCAAGCAAGGGA 60.689 50.000 35.44 19.69 36.76 4.20
111 112 0.689080 TGTTTGGCCAAGCAAGGGAA 60.689 50.000 30.18 8.09 0.00 3.97
112 113 0.467804 GTTTGGCCAAGCAAGGGAAA 59.532 50.000 25.70 1.75 0.00 3.13
113 114 1.134250 GTTTGGCCAAGCAAGGGAAAA 60.134 47.619 25.70 0.95 0.00 2.29
114 115 1.433121 TTGGCCAAGCAAGGGAAAAT 58.567 45.000 16.05 0.00 0.00 1.82
115 116 2.317371 TGGCCAAGCAAGGGAAAATA 57.683 45.000 0.61 0.00 0.00 1.40
116 117 1.899142 TGGCCAAGCAAGGGAAAATAC 59.101 47.619 0.61 0.00 0.00 1.89
117 118 1.899142 GGCCAAGCAAGGGAAAATACA 59.101 47.619 0.00 0.00 0.00 2.29
118 119 2.353704 GGCCAAGCAAGGGAAAATACAC 60.354 50.000 0.00 0.00 0.00 2.90
119 120 2.298729 GCCAAGCAAGGGAAAATACACA 59.701 45.455 0.00 0.00 0.00 3.72
120 121 3.055891 GCCAAGCAAGGGAAAATACACAT 60.056 43.478 0.00 0.00 0.00 3.21
121 122 4.747810 CCAAGCAAGGGAAAATACACATC 58.252 43.478 0.00 0.00 0.00 3.06
122 123 4.381932 CCAAGCAAGGGAAAATACACATCC 60.382 45.833 0.00 0.00 0.00 3.51
123 124 4.046286 AGCAAGGGAAAATACACATCCA 57.954 40.909 0.00 0.00 34.82 3.41
124 125 4.613437 AGCAAGGGAAAATACACATCCAT 58.387 39.130 0.00 0.00 34.82 3.41
125 126 5.765510 AGCAAGGGAAAATACACATCCATA 58.234 37.500 0.00 0.00 34.82 2.74
126 127 6.376248 AGCAAGGGAAAATACACATCCATAT 58.624 36.000 0.00 0.00 34.82 1.78
127 128 6.840705 AGCAAGGGAAAATACACATCCATATT 59.159 34.615 0.00 0.00 34.82 1.28
128 129 7.345392 AGCAAGGGAAAATACACATCCATATTT 59.655 33.333 0.00 0.00 34.82 1.40
129 130 7.653311 GCAAGGGAAAATACACATCCATATTTC 59.347 37.037 0.00 0.00 34.82 2.17
130 131 8.694540 CAAGGGAAAATACACATCCATATTTCA 58.305 33.333 0.00 0.00 34.82 2.69
131 132 9.438163 AAGGGAAAATACACATCCATATTTCAT 57.562 29.630 0.00 0.00 34.82 2.57
132 133 8.863086 AGGGAAAATACACATCCATATTTCATG 58.137 33.333 0.00 0.00 34.82 3.07
133 134 8.859090 GGGAAAATACACATCCATATTTCATGA 58.141 33.333 0.00 0.00 34.82 3.07
137 138 9.645128 AAATACACATCCATATTTCATGAAGGA 57.355 29.630 14.55 14.55 0.00 3.36
138 139 9.645128 AATACACATCCATATTTCATGAAGGAA 57.355 29.630 15.77 0.00 0.00 3.36
139 140 7.959658 ACACATCCATATTTCATGAAGGAAA 57.040 32.000 15.77 0.00 40.72 3.13
140 141 8.365060 ACACATCCATATTTCATGAAGGAAAA 57.635 30.769 15.77 0.00 39.94 2.29
141 142 8.814931 ACACATCCATATTTCATGAAGGAAAAA 58.185 29.630 15.77 0.00 39.94 1.94
142 143 9.090692 CACATCCATATTTCATGAAGGAAAAAC 57.909 33.333 15.77 0.00 39.94 2.43
143 144 8.814931 ACATCCATATTTCATGAAGGAAAAACA 58.185 29.630 15.77 0.00 39.94 2.83
144 145 9.826574 CATCCATATTTCATGAAGGAAAAACAT 57.173 29.630 15.77 4.64 39.94 2.71
146 147 9.874205 TCCATATTTCATGAAGGAAAAACATTC 57.126 29.630 8.41 0.00 39.94 2.67
147 148 9.101655 CCATATTTCATGAAGGAAAAACATTCC 57.898 33.333 8.41 0.00 39.94 3.01
148 149 9.101655 CATATTTCATGAAGGAAAAACATTCCC 57.898 33.333 8.41 0.00 39.94 3.97
149 150 6.491714 TTTCATGAAGGAAAAACATTCCCA 57.508 33.333 8.41 0.00 38.34 4.37
150 151 5.726980 TCATGAAGGAAAAACATTCCCAG 57.273 39.130 0.00 0.00 38.34 4.45
151 152 5.147032 TCATGAAGGAAAAACATTCCCAGT 58.853 37.500 0.00 0.00 38.34 4.00
152 153 4.935352 TGAAGGAAAAACATTCCCAGTG 57.065 40.909 3.67 0.00 38.34 3.66
153 154 3.069443 TGAAGGAAAAACATTCCCAGTGC 59.931 43.478 3.67 0.00 38.34 4.40
154 155 2.962859 AGGAAAAACATTCCCAGTGCT 58.037 42.857 3.67 0.00 39.39 4.40
155 156 2.893489 AGGAAAAACATTCCCAGTGCTC 59.107 45.455 3.67 0.00 39.39 4.26
156 157 2.893489 GGAAAAACATTCCCAGTGCTCT 59.107 45.455 0.00 0.00 32.48 4.09
157 158 3.305608 GGAAAAACATTCCCAGTGCTCTG 60.306 47.826 8.84 8.84 41.01 3.35
158 159 2.957402 AAACATTCCCAGTGCTCTGA 57.043 45.000 17.19 0.00 43.76 3.27
159 160 2.957402 AACATTCCCAGTGCTCTGAA 57.043 45.000 17.19 4.96 43.76 3.02
160 161 2.957402 ACATTCCCAGTGCTCTGAAA 57.043 45.000 17.19 10.90 43.76 2.69
161 162 3.228188 ACATTCCCAGTGCTCTGAAAA 57.772 42.857 17.19 10.57 43.76 2.29
162 163 3.565307 ACATTCCCAGTGCTCTGAAAAA 58.435 40.909 17.19 8.30 43.76 1.94
200 201 8.696410 AAAAGACAGTTTTTAAGCATTTTCGA 57.304 26.923 0.00 0.00 0.00 3.71
201 202 7.914537 AAGACAGTTTTTAAGCATTTTCGAG 57.085 32.000 0.00 0.00 0.00 4.04
202 203 5.915196 AGACAGTTTTTAAGCATTTTCGAGC 59.085 36.000 0.00 0.00 0.00 5.03
203 204 4.675114 ACAGTTTTTAAGCATTTTCGAGCG 59.325 37.500 0.00 0.00 35.48 5.03
204 205 3.668656 AGTTTTTAAGCATTTTCGAGCGC 59.331 39.130 0.00 0.00 35.48 5.92
205 206 3.552604 TTTTAAGCATTTTCGAGCGCT 57.447 38.095 11.27 11.27 35.90 5.92
206 207 2.525750 TTAAGCATTTTCGAGCGCTG 57.474 45.000 18.48 7.71 34.26 5.18
207 208 0.726827 TAAGCATTTTCGAGCGCTGG 59.273 50.000 18.48 15.88 34.26 4.85
208 209 1.237285 AAGCATTTTCGAGCGCTGGT 61.237 50.000 18.48 0.87 34.26 4.00
209 210 1.210155 GCATTTTCGAGCGCTGGTT 59.790 52.632 18.48 0.00 0.00 3.67
210 211 0.387239 GCATTTTCGAGCGCTGGTTT 60.387 50.000 18.48 0.00 0.00 3.27
211 212 1.930371 GCATTTTCGAGCGCTGGTTTT 60.930 47.619 18.48 0.00 0.00 2.43
212 213 2.667171 GCATTTTCGAGCGCTGGTTTTA 60.667 45.455 18.48 1.36 0.00 1.52
213 214 2.961522 TTTTCGAGCGCTGGTTTTAG 57.038 45.000 18.48 0.00 0.00 1.85
214 215 1.873698 TTTCGAGCGCTGGTTTTAGT 58.126 45.000 18.48 0.00 0.00 2.24
215 216 1.144969 TTCGAGCGCTGGTTTTAGTG 58.855 50.000 18.48 0.00 0.00 2.74
216 217 0.032952 TCGAGCGCTGGTTTTAGTGT 59.967 50.000 18.48 0.00 0.00 3.55
217 218 0.865769 CGAGCGCTGGTTTTAGTGTT 59.134 50.000 18.48 0.00 0.00 3.32
218 219 1.263217 CGAGCGCTGGTTTTAGTGTTT 59.737 47.619 18.48 0.00 0.00 2.83
219 220 2.661979 CGAGCGCTGGTTTTAGTGTTTC 60.662 50.000 18.48 0.00 0.00 2.78
220 221 2.548480 GAGCGCTGGTTTTAGTGTTTCT 59.452 45.455 18.48 0.00 0.00 2.52
221 222 2.949644 AGCGCTGGTTTTAGTGTTTCTT 59.050 40.909 10.39 0.00 0.00 2.52
222 223 3.380320 AGCGCTGGTTTTAGTGTTTCTTT 59.620 39.130 10.39 0.00 0.00 2.52
223 224 4.109766 GCGCTGGTTTTAGTGTTTCTTTT 58.890 39.130 0.00 0.00 0.00 2.27
224 225 4.026886 GCGCTGGTTTTAGTGTTTCTTTTG 60.027 41.667 0.00 0.00 0.00 2.44
225 226 5.099575 CGCTGGTTTTAGTGTTTCTTTTGT 58.900 37.500 0.00 0.00 0.00 2.83
226 227 5.229260 CGCTGGTTTTAGTGTTTCTTTTGTC 59.771 40.000 0.00 0.00 0.00 3.18
227 228 5.518847 GCTGGTTTTAGTGTTTCTTTTGTCC 59.481 40.000 0.00 0.00 0.00 4.02
228 229 5.642686 TGGTTTTAGTGTTTCTTTTGTCCG 58.357 37.500 0.00 0.00 0.00 4.79
229 230 5.415077 TGGTTTTAGTGTTTCTTTTGTCCGA 59.585 36.000 0.00 0.00 0.00 4.55
230 231 6.072064 TGGTTTTAGTGTTTCTTTTGTCCGAA 60.072 34.615 0.00 0.00 0.00 4.30
231 232 6.976349 GGTTTTAGTGTTTCTTTTGTCCGAAT 59.024 34.615 0.00 0.00 0.00 3.34
232 233 7.166970 GGTTTTAGTGTTTCTTTTGTCCGAATC 59.833 37.037 0.00 0.00 0.00 2.52
233 234 6.928979 TTAGTGTTTCTTTTGTCCGAATCA 57.071 33.333 0.00 0.00 0.00 2.57
234 235 7.504924 TTAGTGTTTCTTTTGTCCGAATCAT 57.495 32.000 0.00 0.00 0.00 2.45
235 236 8.610248 TTAGTGTTTCTTTTGTCCGAATCATA 57.390 30.769 0.00 0.00 0.00 2.15
236 237 7.504924 AGTGTTTCTTTTGTCCGAATCATAA 57.495 32.000 0.00 0.00 0.00 1.90
237 238 7.584987 AGTGTTTCTTTTGTCCGAATCATAAG 58.415 34.615 0.00 0.00 0.00 1.73
238 239 7.444183 AGTGTTTCTTTTGTCCGAATCATAAGA 59.556 33.333 0.00 0.00 33.54 2.10
239 240 8.073768 GTGTTTCTTTTGTCCGAATCATAAGAA 58.926 33.333 12.03 12.03 39.29 2.52
240 241 8.625651 TGTTTCTTTTGTCCGAATCATAAGAAA 58.374 29.630 18.11 18.11 43.32 2.52
242 243 7.737972 TCTTTTGTCCGAATCATAAGAAACA 57.262 32.000 0.00 0.00 32.88 2.83
243 244 7.581476 TCTTTTGTCCGAATCATAAGAAACAC 58.419 34.615 0.00 0.00 32.88 3.32
244 245 5.524511 TTGTCCGAATCATAAGAAACACG 57.475 39.130 0.00 0.00 0.00 4.49
245 246 3.930229 TGTCCGAATCATAAGAAACACGG 59.070 43.478 0.00 0.00 40.36 4.94
246 247 4.178540 GTCCGAATCATAAGAAACACGGA 58.821 43.478 0.00 0.00 44.37 4.69
247 248 5.018539 TCCGAATCATAAGAAACACGGAT 57.981 39.130 0.00 0.00 42.32 4.18
248 249 6.151663 TCCGAATCATAAGAAACACGGATA 57.848 37.500 0.00 0.00 42.32 2.59
249 250 6.755206 TCCGAATCATAAGAAACACGGATAT 58.245 36.000 0.00 0.00 42.32 1.63
250 251 7.214381 TCCGAATCATAAGAAACACGGATATT 58.786 34.615 0.00 0.00 42.32 1.28
251 252 7.713507 TCCGAATCATAAGAAACACGGATATTT 59.286 33.333 0.00 0.00 42.32 1.40
252 253 7.798516 CCGAATCATAAGAAACACGGATATTTG 59.201 37.037 0.00 0.00 41.30 2.32
253 254 7.321271 CGAATCATAAGAAACACGGATATTTGC 59.679 37.037 0.00 0.00 0.00 3.68
254 255 6.993786 TCATAAGAAACACGGATATTTGCA 57.006 33.333 0.00 0.00 0.00 4.08
255 256 6.781138 TCATAAGAAACACGGATATTTGCAC 58.219 36.000 0.00 0.00 0.00 4.57
256 257 3.740044 AGAAACACGGATATTTGCACG 57.260 42.857 0.00 0.00 0.00 5.34
257 258 3.071479 AGAAACACGGATATTTGCACGT 58.929 40.909 0.00 0.00 40.60 4.49
258 259 4.247258 AGAAACACGGATATTTGCACGTA 58.753 39.130 0.00 0.00 37.85 3.57
259 260 4.873827 AGAAACACGGATATTTGCACGTAT 59.126 37.500 0.00 0.00 37.85 3.06
260 261 4.530094 AACACGGATATTTGCACGTATG 57.470 40.909 0.00 0.00 37.85 2.39
261 262 3.527533 ACACGGATATTTGCACGTATGT 58.472 40.909 0.00 0.00 37.85 2.29
286 287 3.799137 CATTCAACAATGTTTGCTGCC 57.201 42.857 0.00 0.00 35.53 4.85
287 288 2.975732 TTCAACAATGTTTGCTGCCA 57.024 40.000 0.00 0.00 0.00 4.92
288 289 2.975732 TCAACAATGTTTGCTGCCAA 57.024 40.000 0.00 0.00 0.00 4.52
289 290 3.257469 TCAACAATGTTTGCTGCCAAA 57.743 38.095 0.00 0.00 38.56 3.28
290 291 3.603532 TCAACAATGTTTGCTGCCAAAA 58.396 36.364 0.00 0.00 42.19 2.44
291 292 4.005650 TCAACAATGTTTGCTGCCAAAAA 58.994 34.783 0.00 0.00 42.19 1.94
292 293 4.639310 TCAACAATGTTTGCTGCCAAAAAT 59.361 33.333 0.00 0.00 42.19 1.82
293 294 5.819379 TCAACAATGTTTGCTGCCAAAAATA 59.181 32.000 0.00 0.00 42.19 1.40
294 295 6.317140 TCAACAATGTTTGCTGCCAAAAATAA 59.683 30.769 0.00 0.00 42.19 1.40
295 296 6.880942 ACAATGTTTGCTGCCAAAAATAAT 57.119 29.167 0.00 0.00 42.19 1.28
296 297 7.274603 ACAATGTTTGCTGCCAAAAATAATT 57.725 28.000 0.00 0.00 42.19 1.40
297 298 7.361894 ACAATGTTTGCTGCCAAAAATAATTC 58.638 30.769 0.00 0.00 42.19 2.17
298 299 7.229106 ACAATGTTTGCTGCCAAAAATAATTCT 59.771 29.630 0.00 0.00 42.19 2.40
299 300 6.542574 TGTTTGCTGCCAAAAATAATTCTG 57.457 33.333 0.00 0.00 42.19 3.02
300 301 6.286758 TGTTTGCTGCCAAAAATAATTCTGA 58.713 32.000 0.00 0.00 42.19 3.27
301 302 6.935771 TGTTTGCTGCCAAAAATAATTCTGAT 59.064 30.769 0.00 0.00 42.19 2.90
302 303 7.118101 TGTTTGCTGCCAAAAATAATTCTGATC 59.882 33.333 0.00 0.00 42.19 2.92
303 304 6.283544 TGCTGCCAAAAATAATTCTGATCA 57.716 33.333 0.00 0.00 0.00 2.92
304 305 6.880484 TGCTGCCAAAAATAATTCTGATCAT 58.120 32.000 0.00 0.00 0.00 2.45
305 306 7.332557 TGCTGCCAAAAATAATTCTGATCATT 58.667 30.769 0.00 0.00 0.00 2.57
306 307 7.825270 TGCTGCCAAAAATAATTCTGATCATTT 59.175 29.630 0.00 0.00 0.00 2.32
307 308 8.671028 GCTGCCAAAAATAATTCTGATCATTTT 58.329 29.630 0.00 0.00 33.24 1.82
336 337 9.944663 TTTTACTATTCATAAGGCGCAATTAAG 57.055 29.630 10.83 5.10 0.00 1.85
337 338 6.002062 ACTATTCATAAGGCGCAATTAAGC 57.998 37.500 10.83 0.00 0.00 3.09
338 339 5.765182 ACTATTCATAAGGCGCAATTAAGCT 59.235 36.000 10.83 0.00 0.00 3.74
339 340 4.552166 TTCATAAGGCGCAATTAAGCTC 57.448 40.909 10.83 0.00 0.00 4.09
340 341 2.543848 TCATAAGGCGCAATTAAGCTCG 59.456 45.455 10.83 0.00 0.00 5.03
341 342 1.295792 TAAGGCGCAATTAAGCTCGG 58.704 50.000 10.83 0.00 0.00 4.63
342 343 1.376609 AAGGCGCAATTAAGCTCGGG 61.377 55.000 10.83 0.00 0.00 5.14
343 344 1.817941 GGCGCAATTAAGCTCGGGA 60.818 57.895 10.83 0.00 0.00 5.14
344 345 1.643832 GCGCAATTAAGCTCGGGAG 59.356 57.895 0.30 0.00 0.00 4.30
355 356 1.153667 CTCGGGAGCAGAAGAGTGC 60.154 63.158 0.00 0.00 44.35 4.40
362 363 2.537863 GCAGAAGAGTGCTTTCGCT 58.462 52.632 0.00 0.00 40.54 4.93
363 364 0.871057 GCAGAAGAGTGCTTTCGCTT 59.129 50.000 0.00 0.00 40.54 4.68
364 365 1.265365 GCAGAAGAGTGCTTTCGCTTT 59.735 47.619 0.00 0.00 40.54 3.51
365 366 2.664151 GCAGAAGAGTGCTTTCGCTTTC 60.664 50.000 0.00 0.00 40.54 2.62
366 367 2.096019 CAGAAGAGTGCTTTCGCTTTCC 60.096 50.000 0.00 0.00 33.61 3.13
367 368 1.873591 GAAGAGTGCTTTCGCTTTCCA 59.126 47.619 0.00 0.00 33.61 3.53
368 369 2.191128 AGAGTGCTTTCGCTTTCCAT 57.809 45.000 0.00 0.00 36.97 3.41
369 370 1.808945 AGAGTGCTTTCGCTTTCCATG 59.191 47.619 0.00 0.00 36.97 3.66
370 371 0.883833 AGTGCTTTCGCTTTCCATGG 59.116 50.000 4.97 4.97 36.97 3.66
377 378 3.915437 TTCGCTTTCCATGGAGTTTTC 57.085 42.857 15.53 3.29 0.00 2.29
397 398 5.902613 TTCCATCAAGAATAAGTGCAAGG 57.097 39.130 0.00 0.00 0.00 3.61
404 405 7.288810 TCAAGAATAAGTGCAAGGAAACAAT 57.711 32.000 0.00 0.00 0.00 2.71
406 407 8.855110 TCAAGAATAAGTGCAAGGAAACAATTA 58.145 29.630 0.00 0.00 31.75 1.40
407 408 9.474920 CAAGAATAAGTGCAAGGAAACAATTAA 57.525 29.630 0.00 0.00 31.08 1.40
409 410 9.860898 AGAATAAGTGCAAGGAAACAATTAATC 57.139 29.630 0.00 0.00 31.08 1.75
410 411 9.860898 GAATAAGTGCAAGGAAACAATTAATCT 57.139 29.630 0.00 0.00 31.08 2.40
411 412 9.643693 AATAAGTGCAAGGAAACAATTAATCTG 57.356 29.630 0.00 0.00 31.08 2.90
412 413 6.655078 AGTGCAAGGAAACAATTAATCTGT 57.345 33.333 0.00 0.00 0.00 3.41
491 492 2.301296 ACTCAGCAGCAGTGACATTACT 59.699 45.455 0.00 0.00 0.00 2.24
492 493 3.511540 ACTCAGCAGCAGTGACATTACTA 59.488 43.478 0.00 0.00 0.00 1.82
493 494 4.021104 ACTCAGCAGCAGTGACATTACTAA 60.021 41.667 0.00 0.00 0.00 2.24
494 495 5.089970 TCAGCAGCAGTGACATTACTAAT 57.910 39.130 0.00 0.00 0.00 1.73
495 496 6.127338 ACTCAGCAGCAGTGACATTACTAATA 60.127 38.462 0.00 0.00 0.00 0.98
496 497 6.042777 TCAGCAGCAGTGACATTACTAATAC 58.957 40.000 0.00 0.00 0.00 1.89
557 558 3.813166 CACCCGTAGCCACCATTAAATAG 59.187 47.826 0.00 0.00 0.00 1.73
683 702 0.679640 CACAGCCGAGGAGAGAGAGT 60.680 60.000 0.00 0.00 0.00 3.24
685 704 0.679640 CAGCCGAGGAGAGAGAGTGT 60.680 60.000 0.00 0.00 0.00 3.55
691 726 0.538516 AGGAGAGAGAGTGTGCGTGT 60.539 55.000 0.00 0.00 0.00 4.49
692 727 0.109504 GGAGAGAGAGTGTGCGTGTC 60.110 60.000 0.00 0.00 0.00 3.67
706 741 2.744741 TGCGTGTCTGTGTTCAAAAGAA 59.255 40.909 0.00 0.00 0.00 2.52
708 743 3.181510 GCGTGTCTGTGTTCAAAAGAACT 60.182 43.478 9.45 0.00 36.15 3.01
717 754 5.586243 TGTGTTCAAAAGAACTGAAGAGAGG 59.414 40.000 9.45 0.00 33.56 3.69
718 755 4.576463 TGTTCAAAAGAACTGAAGAGAGGC 59.424 41.667 9.45 0.00 33.56 4.70
788 834 3.294493 GGGTGCGGCTCAAGCAAA 61.294 61.111 0.00 0.00 46.97 3.68
808 854 0.662374 CACCAGCTCAAAGCAAAGCG 60.662 55.000 1.29 0.00 45.56 4.68
809 855 0.819259 ACCAGCTCAAAGCAAAGCGA 60.819 50.000 1.29 0.00 45.56 4.93
810 856 0.109873 CCAGCTCAAAGCAAAGCGAG 60.110 55.000 1.29 0.00 45.56 5.03
812 858 1.578423 GCTCAAAGCAAAGCGAGCT 59.422 52.632 9.21 0.00 45.86 4.09
874 944 2.842058 GCCATCCCCCATCTCCTG 59.158 66.667 0.00 0.00 0.00 3.86
880 950 1.457643 CCCCCATCTCCTGCTCGTA 60.458 63.158 0.00 0.00 0.00 3.43
945 1039 0.178932 CTGATCGGATAGGTGGGGGA 60.179 60.000 0.00 0.00 0.00 4.81
946 1040 0.178932 TGATCGGATAGGTGGGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
959 1067 1.670083 GGGGAGGGAACGTTCGTTG 60.670 63.158 21.34 0.00 0.00 4.10
960 1068 1.070275 GGGAGGGAACGTTCGTTGT 59.930 57.895 21.34 6.15 0.00 3.32
961 1069 0.533531 GGGAGGGAACGTTCGTTGTT 60.534 55.000 21.34 5.40 0.00 2.83
963 1071 1.262417 GGAGGGAACGTTCGTTGTTTC 59.738 52.381 21.34 11.62 0.00 2.78
965 1073 3.383761 GAGGGAACGTTCGTTGTTTCTA 58.616 45.455 21.34 0.00 0.00 2.10
966 1074 3.126073 AGGGAACGTTCGTTGTTTCTAC 58.874 45.455 21.34 3.96 0.00 2.59
972 1082 6.193410 GGAACGTTCGTTGTTTCTACTTTTTC 59.807 38.462 21.34 0.00 0.00 2.29
974 1084 4.663091 CGTTCGTTGTTTCTACTTTTTCGG 59.337 41.667 0.00 0.00 0.00 4.30
975 1085 5.562917 GTTCGTTGTTTCTACTTTTTCGGT 58.437 37.500 0.00 0.00 0.00 4.69
978 1088 4.603985 GTTGTTTCTACTTTTTCGGTGGG 58.396 43.478 0.00 0.00 0.00 4.61
1034 1144 2.513895 CCGGTTCTTGGTGGTGGT 59.486 61.111 0.00 0.00 0.00 4.16
1045 1155 1.898574 GTGGTGGTGCTCTTGGTGG 60.899 63.158 0.00 0.00 0.00 4.61
1221 1331 1.509004 GGTGGTGTCGCTCTCTCTC 59.491 63.158 0.00 0.00 0.00 3.20
1314 1424 1.277273 CTCTCCACCTGCAACATCTCA 59.723 52.381 0.00 0.00 0.00 3.27
1437 1547 1.838073 CGGGGCTCCAGTACCTGTTT 61.838 60.000 1.96 0.00 0.00 2.83
1458 1568 0.534203 TCAACTCCAACCGCTTCACC 60.534 55.000 0.00 0.00 0.00 4.02
1644 1754 4.143333 GGCGCGCTCTCCAACCTA 62.143 66.667 32.29 0.00 0.00 3.08
1824 1934 0.976641 ACATGAACAAGCTCTCCGGA 59.023 50.000 2.93 2.93 0.00 5.14
2034 2144 0.537188 ACCTATCGGACAACCAGCTG 59.463 55.000 6.78 6.78 35.59 4.24
2349 2459 2.348998 CTTCCTCCAAGCGTGGCT 59.651 61.111 14.54 0.00 45.54 4.75
2418 2528 1.343069 GCGAGATACCCAGGGAGATT 58.657 55.000 14.54 0.00 0.00 2.40
2831 2941 2.342648 GAGCGGGAACAGGTTCGT 59.657 61.111 6.12 0.00 40.37 3.85
2880 2990 2.588877 ACGCAGTTGCAGTCGCTT 60.589 55.556 4.84 0.00 37.78 4.68
3084 3194 1.225855 TTTGTGCGTCAGACATGGTC 58.774 50.000 0.41 0.00 0.00 4.02
3264 3374 1.172180 TCTCGTACCCGTGGACGTTT 61.172 55.000 1.72 0.00 40.00 3.60
3342 3452 2.290260 TGAGAATGTGATCGGCAAAGGT 60.290 45.455 0.00 0.00 0.00 3.50
3489 3599 0.179004 TCAGGCACCGGAACATTGTT 60.179 50.000 9.46 0.63 0.00 2.83
3576 3686 1.988956 CCTGCAGGAGCTCCTCAGT 60.989 63.158 35.17 19.30 46.65 3.41
3730 3841 2.365941 GACTCCAAGTATGAGGCCTACC 59.634 54.545 4.42 0.00 31.28 3.18
3765 3876 1.667724 CTGGCCAAGCTAATGAACTCG 59.332 52.381 7.01 0.00 0.00 4.18
3839 3966 1.272490 TCCAGGCAAGTCACTTCTACG 59.728 52.381 0.00 0.00 0.00 3.51
3856 3983 6.253727 ACTTCTACGAACTTGCATTTATCTCG 59.746 38.462 0.00 0.00 0.00 4.04
3958 4087 8.125978 AGTGTACATTCATTCACCAATTGATT 57.874 30.769 7.12 0.00 32.84 2.57
3967 4096 3.499338 TCACCAATTGATTCCACAGCTT 58.501 40.909 7.12 0.00 0.00 3.74
4015 4144 4.336280 ACCTAAGCAAGAATCTTTGACCC 58.664 43.478 0.00 0.00 0.00 4.46
4033 4168 2.369532 ACCCGTGGTTGCTTCTAGTAAA 59.630 45.455 0.00 0.00 27.29 2.01
4077 5271 4.871513 TGACCATGTCGATATCTTGTAGC 58.128 43.478 0.34 0.00 34.95 3.58
4126 5330 6.631016 TGACATTGTCCTTGCTTAGTAGTAG 58.369 40.000 14.05 0.00 0.00 2.57
4132 5336 7.713734 TGTCCTTGCTTAGTAGTAGTACAAT 57.286 36.000 10.33 0.00 0.00 2.71
4255 5469 9.845305 GATTTGCGTAATTATACTGAAGTGTAC 57.155 33.333 0.00 0.00 0.00 2.90
4322 5542 5.825593 ACAAGGTGATTTCAGTTAGAGGA 57.174 39.130 0.00 0.00 0.00 3.71
4324 5544 4.828072 AGGTGATTTCAGTTAGAGGACC 57.172 45.455 0.00 0.00 0.00 4.46
4586 5814 0.906282 TCCAGGAGATGCTGCAGACA 60.906 55.000 20.43 15.57 0.00 3.41
4893 6123 4.515567 GGGGTTTCTTGTACAGTTTCAGAG 59.484 45.833 0.00 0.00 0.00 3.35
4937 6169 5.245977 GGGAACTTGAATGGGAAATTTCTCA 59.754 40.000 22.62 22.62 42.82 3.27
4953 6187 9.301153 GAAATTTCTCAGTTTTTAGTTTGCTCA 57.699 29.630 11.05 0.00 0.00 4.26
5029 6273 4.934602 TCGTTTGCATGTGATGTGATTCTA 59.065 37.500 0.00 0.00 0.00 2.10
5188 6862 2.290896 TGGTCAATCGATTTTCTGGCCT 60.291 45.455 17.06 0.00 34.53 5.19
5268 6946 3.959535 TGGGCTGTTTGGATTTGATTC 57.040 42.857 0.00 0.00 0.00 2.52
5274 6952 4.229096 CTGTTTGGATTTGATTCACACCG 58.771 43.478 0.00 0.00 0.00 4.94
5305 6983 1.449601 TCGATTTCGCTCTTGGGCC 60.450 57.895 0.00 0.00 39.60 5.80
5306 6984 2.472909 CGATTTCGCTCTTGGGCCC 61.473 63.158 17.59 17.59 0.00 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.375454 TGTGCGTTCGGTTTGTTCTG 59.625 50.000 0.00 0.00 0.00 3.02
1 2 0.655733 CTGTGCGTTCGGTTTGTTCT 59.344 50.000 0.00 0.00 0.00 3.01
2 3 0.653636 TCTGTGCGTTCGGTTTGTTC 59.346 50.000 0.00 0.00 0.00 3.18
3 4 0.655733 CTCTGTGCGTTCGGTTTGTT 59.344 50.000 0.00 0.00 0.00 2.83
4 5 0.461339 ACTCTGTGCGTTCGGTTTGT 60.461 50.000 0.00 0.00 0.00 2.83
5 6 0.042188 CACTCTGTGCGTTCGGTTTG 60.042 55.000 0.00 0.00 0.00 2.93
6 7 0.179094 TCACTCTGTGCGTTCGGTTT 60.179 50.000 0.00 0.00 32.98 3.27
7 8 0.179094 TTCACTCTGTGCGTTCGGTT 60.179 50.000 0.00 0.00 32.98 4.44
8 9 0.033504 ATTCACTCTGTGCGTTCGGT 59.966 50.000 0.00 0.00 32.98 4.69
9 10 1.654105 GTATTCACTCTGTGCGTTCGG 59.346 52.381 0.00 0.00 32.98 4.30
10 11 2.596452 AGTATTCACTCTGTGCGTTCG 58.404 47.619 0.00 0.00 32.98 3.95
11 12 4.106197 CCTAGTATTCACTCTGTGCGTTC 58.894 47.826 0.00 0.00 36.14 3.95
12 13 3.119101 CCCTAGTATTCACTCTGTGCGTT 60.119 47.826 0.00 0.00 36.14 4.84
13 14 2.427453 CCCTAGTATTCACTCTGTGCGT 59.573 50.000 0.00 0.00 36.14 5.24
14 15 2.799917 GCCCTAGTATTCACTCTGTGCG 60.800 54.545 0.00 0.00 36.14 5.34
15 16 2.168521 TGCCCTAGTATTCACTCTGTGC 59.831 50.000 0.00 0.00 36.14 4.57
16 17 3.449018 AGTGCCCTAGTATTCACTCTGTG 59.551 47.826 0.00 0.00 35.05 3.66
17 18 3.714144 AGTGCCCTAGTATTCACTCTGT 58.286 45.455 0.00 0.00 35.05 3.41
18 19 4.744795 AAGTGCCCTAGTATTCACTCTG 57.255 45.455 0.00 0.00 38.68 3.35
19 20 5.595133 GTCTAAGTGCCCTAGTATTCACTCT 59.405 44.000 0.00 0.00 38.68 3.24
20 21 5.360144 TGTCTAAGTGCCCTAGTATTCACTC 59.640 44.000 0.00 0.00 38.68 3.51
21 22 5.269991 TGTCTAAGTGCCCTAGTATTCACT 58.730 41.667 0.00 0.00 41.08 3.41
22 23 5.593679 TGTCTAAGTGCCCTAGTATTCAC 57.406 43.478 0.00 0.00 0.00 3.18
23 24 6.837048 TGTATGTCTAAGTGCCCTAGTATTCA 59.163 38.462 0.00 0.00 0.00 2.57
24 25 7.146648 GTGTATGTCTAAGTGCCCTAGTATTC 58.853 42.308 0.00 0.00 0.00 1.75
25 26 6.610020 TGTGTATGTCTAAGTGCCCTAGTATT 59.390 38.462 0.00 0.00 0.00 1.89
26 27 6.134055 TGTGTATGTCTAAGTGCCCTAGTAT 58.866 40.000 0.00 0.00 0.00 2.12
27 28 5.512298 TGTGTATGTCTAAGTGCCCTAGTA 58.488 41.667 0.00 0.00 0.00 1.82
28 29 4.350245 TGTGTATGTCTAAGTGCCCTAGT 58.650 43.478 0.00 0.00 0.00 2.57
29 30 5.537300 ATGTGTATGTCTAAGTGCCCTAG 57.463 43.478 0.00 0.00 0.00 3.02
30 31 5.451381 CGAATGTGTATGTCTAAGTGCCCTA 60.451 44.000 0.00 0.00 0.00 3.53
31 32 4.680708 CGAATGTGTATGTCTAAGTGCCCT 60.681 45.833 0.00 0.00 0.00 5.19
32 33 3.555956 CGAATGTGTATGTCTAAGTGCCC 59.444 47.826 0.00 0.00 0.00 5.36
33 34 4.430007 TCGAATGTGTATGTCTAAGTGCC 58.570 43.478 0.00 0.00 0.00 5.01
34 35 6.310467 TCTTTCGAATGTGTATGTCTAAGTGC 59.690 38.462 10.48 0.00 0.00 4.40
35 36 7.812309 TCTTTCGAATGTGTATGTCTAAGTG 57.188 36.000 10.48 0.00 0.00 3.16
36 37 8.251026 TGATCTTTCGAATGTGTATGTCTAAGT 58.749 33.333 10.48 0.00 0.00 2.24
37 38 8.634475 TGATCTTTCGAATGTGTATGTCTAAG 57.366 34.615 10.48 0.00 0.00 2.18
38 39 9.599866 AATGATCTTTCGAATGTGTATGTCTAA 57.400 29.630 10.48 0.00 0.00 2.10
39 40 9.599866 AAATGATCTTTCGAATGTGTATGTCTA 57.400 29.630 10.48 0.00 0.00 2.59
40 41 8.393366 CAAATGATCTTTCGAATGTGTATGTCT 58.607 33.333 10.48 0.00 0.00 3.41
41 42 7.641411 CCAAATGATCTTTCGAATGTGTATGTC 59.359 37.037 10.48 3.03 0.00 3.06
42 43 7.121168 ACCAAATGATCTTTCGAATGTGTATGT 59.879 33.333 10.48 0.00 0.00 2.29
43 44 7.430211 CACCAAATGATCTTTCGAATGTGTATG 59.570 37.037 10.48 4.80 0.00 2.39
44 45 7.121168 ACACCAAATGATCTTTCGAATGTGTAT 59.879 33.333 10.48 0.00 0.00 2.29
45 46 6.429692 ACACCAAATGATCTTTCGAATGTGTA 59.570 34.615 10.48 0.05 0.00 2.90
46 47 5.241506 ACACCAAATGATCTTTCGAATGTGT 59.758 36.000 10.48 2.50 0.00 3.72
47 48 5.702865 ACACCAAATGATCTTTCGAATGTG 58.297 37.500 10.48 1.49 0.00 3.21
48 49 5.964958 ACACCAAATGATCTTTCGAATGT 57.035 34.783 10.48 0.00 0.00 2.71
49 50 6.380995 TCAACACCAAATGATCTTTCGAATG 58.619 36.000 0.00 0.78 0.00 2.67
50 51 6.573664 TCAACACCAAATGATCTTTCGAAT 57.426 33.333 0.00 0.00 0.00 3.34
51 52 6.384258 TTCAACACCAAATGATCTTTCGAA 57.616 33.333 0.00 0.00 0.00 3.71
52 53 6.384258 TTTCAACACCAAATGATCTTTCGA 57.616 33.333 0.00 0.00 0.00 3.71
53 54 8.638565 GTTATTTCAACACCAAATGATCTTTCG 58.361 33.333 0.00 0.00 0.00 3.46
54 55 9.474920 TGTTATTTCAACACCAAATGATCTTTC 57.525 29.630 0.00 0.00 0.00 2.62
55 56 9.480053 CTGTTATTTCAACACCAAATGATCTTT 57.520 29.630 0.00 0.00 0.00 2.52
56 57 8.859090 TCTGTTATTTCAACACCAAATGATCTT 58.141 29.630 0.00 0.00 0.00 2.40
57 58 8.408043 TCTGTTATTTCAACACCAAATGATCT 57.592 30.769 0.00 0.00 0.00 2.75
58 59 7.274250 GCTCTGTTATTTCAACACCAAATGATC 59.726 37.037 0.00 0.00 0.00 2.92
59 60 7.039504 AGCTCTGTTATTTCAACACCAAATGAT 60.040 33.333 0.00 0.00 0.00 2.45
60 61 6.265196 AGCTCTGTTATTTCAACACCAAATGA 59.735 34.615 0.00 0.00 0.00 2.57
61 62 6.364165 CAGCTCTGTTATTTCAACACCAAATG 59.636 38.462 0.00 0.00 0.00 2.32
62 63 6.265196 TCAGCTCTGTTATTTCAACACCAAAT 59.735 34.615 0.00 0.00 0.00 2.32
63 64 5.592282 TCAGCTCTGTTATTTCAACACCAAA 59.408 36.000 0.00 0.00 0.00 3.28
64 65 5.129634 TCAGCTCTGTTATTTCAACACCAA 58.870 37.500 0.00 0.00 0.00 3.67
65 66 4.713553 TCAGCTCTGTTATTTCAACACCA 58.286 39.130 0.00 0.00 0.00 4.17
66 67 5.689383 TTCAGCTCTGTTATTTCAACACC 57.311 39.130 0.00 0.00 0.00 4.16
67 68 6.729187 AGTTTCAGCTCTGTTATTTCAACAC 58.271 36.000 0.00 0.00 0.00 3.32
68 69 6.942532 AGTTTCAGCTCTGTTATTTCAACA 57.057 33.333 0.00 0.00 0.00 3.33
69 70 7.196331 ACAAGTTTCAGCTCTGTTATTTCAAC 58.804 34.615 0.00 0.00 0.00 3.18
70 71 7.333528 ACAAGTTTCAGCTCTGTTATTTCAA 57.666 32.000 0.00 0.00 0.00 2.69
71 72 6.942532 ACAAGTTTCAGCTCTGTTATTTCA 57.057 33.333 0.00 0.00 0.00 2.69
72 73 7.168135 CCAAACAAGTTTCAGCTCTGTTATTTC 59.832 37.037 0.00 0.00 0.00 2.17
73 74 6.980397 CCAAACAAGTTTCAGCTCTGTTATTT 59.020 34.615 0.00 0.00 0.00 1.40
74 75 6.507023 CCAAACAAGTTTCAGCTCTGTTATT 58.493 36.000 0.00 0.00 0.00 1.40
75 76 5.507985 GCCAAACAAGTTTCAGCTCTGTTAT 60.508 40.000 9.00 0.00 0.00 1.89
76 77 4.202010 GCCAAACAAGTTTCAGCTCTGTTA 60.202 41.667 9.00 0.00 0.00 2.41
77 78 3.429410 GCCAAACAAGTTTCAGCTCTGTT 60.429 43.478 9.00 0.00 0.00 3.16
78 79 2.099756 GCCAAACAAGTTTCAGCTCTGT 59.900 45.455 9.00 0.00 0.00 3.41
79 80 2.544486 GGCCAAACAAGTTTCAGCTCTG 60.544 50.000 0.00 0.00 32.46 3.35
80 81 1.683385 GGCCAAACAAGTTTCAGCTCT 59.317 47.619 0.00 0.00 32.46 4.09
81 82 1.408702 TGGCCAAACAAGTTTCAGCTC 59.591 47.619 0.61 7.46 32.46 4.09
82 83 1.484038 TGGCCAAACAAGTTTCAGCT 58.516 45.000 0.61 0.00 32.46 4.24
83 84 2.204237 CTTGGCCAAACAAGTTTCAGC 58.796 47.619 20.91 8.11 42.18 4.26
91 92 0.689080 TCCCTTGCTTGGCCAAACAA 60.689 50.000 27.92 27.92 0.00 2.83
92 93 0.689080 TTCCCTTGCTTGGCCAAACA 60.689 50.000 20.91 19.19 0.00 2.83
93 94 0.467804 TTTCCCTTGCTTGGCCAAAC 59.532 50.000 20.91 16.39 0.00 2.93
94 95 1.207791 TTTTCCCTTGCTTGGCCAAA 58.792 45.000 20.91 1.92 0.00 3.28
95 96 1.433121 ATTTTCCCTTGCTTGGCCAA 58.567 45.000 19.25 19.25 0.00 4.52
96 97 1.899142 GTATTTTCCCTTGCTTGGCCA 59.101 47.619 0.00 0.00 0.00 5.36
97 98 1.899142 TGTATTTTCCCTTGCTTGGCC 59.101 47.619 0.00 0.00 0.00 5.36
98 99 2.298729 TGTGTATTTTCCCTTGCTTGGC 59.701 45.455 0.00 0.00 0.00 4.52
99 100 4.381932 GGATGTGTATTTTCCCTTGCTTGG 60.382 45.833 0.00 0.00 0.00 3.61
100 101 4.220382 TGGATGTGTATTTTCCCTTGCTTG 59.780 41.667 0.00 0.00 0.00 4.01
101 102 4.415596 TGGATGTGTATTTTCCCTTGCTT 58.584 39.130 0.00 0.00 0.00 3.91
102 103 4.046286 TGGATGTGTATTTTCCCTTGCT 57.954 40.909 0.00 0.00 0.00 3.91
103 104 6.655078 ATATGGATGTGTATTTTCCCTTGC 57.345 37.500 0.00 0.00 0.00 4.01
104 105 8.694540 TGAAATATGGATGTGTATTTTCCCTTG 58.305 33.333 0.00 0.00 32.31 3.61
105 106 8.837099 TGAAATATGGATGTGTATTTTCCCTT 57.163 30.769 0.00 0.00 32.31 3.95
106 107 8.863086 CATGAAATATGGATGTGTATTTTCCCT 58.137 33.333 0.00 0.00 32.31 4.20
107 108 8.859090 TCATGAAATATGGATGTGTATTTTCCC 58.141 33.333 0.00 0.00 32.31 3.97
111 112 9.645128 TCCTTCATGAAATATGGATGTGTATTT 57.355 29.630 9.88 0.00 34.23 1.40
112 113 9.645128 TTCCTTCATGAAATATGGATGTGTATT 57.355 29.630 13.30 0.00 0.00 1.89
113 114 9.645128 TTTCCTTCATGAAATATGGATGTGTAT 57.355 29.630 13.30 0.00 29.56 2.29
114 115 9.473007 TTTTCCTTCATGAAATATGGATGTGTA 57.527 29.630 13.30 0.00 34.41 2.90
115 116 7.959658 TTTCCTTCATGAAATATGGATGTGT 57.040 32.000 13.30 0.00 29.56 3.72
116 117 9.090692 GTTTTTCCTTCATGAAATATGGATGTG 57.909 33.333 13.30 0.00 34.41 3.21
117 118 8.814931 TGTTTTTCCTTCATGAAATATGGATGT 58.185 29.630 13.30 0.00 34.41 3.06
118 119 9.826574 ATGTTTTTCCTTCATGAAATATGGATG 57.173 29.630 13.30 0.00 34.41 3.51
120 121 9.874205 GAATGTTTTTCCTTCATGAAATATGGA 57.126 29.630 9.88 9.66 34.41 3.41
121 122 9.101655 GGAATGTTTTTCCTTCATGAAATATGG 57.898 33.333 9.88 7.34 34.41 2.74
122 123 9.101655 GGGAATGTTTTTCCTTCATGAAATATG 57.898 33.333 9.88 0.00 38.61 1.78
123 124 8.824783 TGGGAATGTTTTTCCTTCATGAAATAT 58.175 29.630 9.88 0.00 38.61 1.28
124 125 8.200024 TGGGAATGTTTTTCCTTCATGAAATA 57.800 30.769 9.88 0.00 38.61 1.40
125 126 7.077050 TGGGAATGTTTTTCCTTCATGAAAT 57.923 32.000 9.88 0.00 38.61 2.17
126 127 6.099557 ACTGGGAATGTTTTTCCTTCATGAAA 59.900 34.615 9.88 0.00 38.61 2.69
127 128 5.602145 ACTGGGAATGTTTTTCCTTCATGAA 59.398 36.000 8.12 8.12 38.61 2.57
128 129 5.010922 CACTGGGAATGTTTTTCCTTCATGA 59.989 40.000 4.51 0.00 38.61 3.07
129 130 5.232463 CACTGGGAATGTTTTTCCTTCATG 58.768 41.667 4.51 0.00 38.61 3.07
130 131 4.262592 GCACTGGGAATGTTTTTCCTTCAT 60.263 41.667 4.51 0.00 38.61 2.57
131 132 3.069443 GCACTGGGAATGTTTTTCCTTCA 59.931 43.478 4.51 0.00 38.61 3.02
132 133 3.321968 AGCACTGGGAATGTTTTTCCTTC 59.678 43.478 4.51 0.00 38.61 3.46
133 134 3.308401 AGCACTGGGAATGTTTTTCCTT 58.692 40.909 4.51 0.00 38.61 3.36
134 135 2.893489 GAGCACTGGGAATGTTTTTCCT 59.107 45.455 4.51 0.00 38.61 3.36
135 136 2.893489 AGAGCACTGGGAATGTTTTTCC 59.107 45.455 0.00 0.00 37.86 3.13
136 137 3.569701 TCAGAGCACTGGGAATGTTTTTC 59.430 43.478 11.42 0.00 43.60 2.29
137 138 3.565307 TCAGAGCACTGGGAATGTTTTT 58.435 40.909 11.42 0.00 43.60 1.94
138 139 3.228188 TCAGAGCACTGGGAATGTTTT 57.772 42.857 11.42 0.00 43.60 2.43
139 140 2.957402 TCAGAGCACTGGGAATGTTT 57.043 45.000 11.42 0.00 43.60 2.83
140 141 2.957402 TTCAGAGCACTGGGAATGTT 57.043 45.000 11.42 0.00 43.60 2.71
141 142 2.957402 TTTCAGAGCACTGGGAATGT 57.043 45.000 11.42 0.00 43.60 2.71
174 175 9.145865 TCGAAAATGCTTAAAAACTGTCTTTTT 57.854 25.926 6.19 2.06 35.91 1.94
175 176 8.696410 TCGAAAATGCTTAAAAACTGTCTTTT 57.304 26.923 0.00 0.00 33.22 2.27
176 177 7.043391 GCTCGAAAATGCTTAAAAACTGTCTTT 60.043 33.333 0.00 0.00 0.00 2.52
177 178 6.417930 GCTCGAAAATGCTTAAAAACTGTCTT 59.582 34.615 0.00 0.00 0.00 3.01
178 179 5.915196 GCTCGAAAATGCTTAAAAACTGTCT 59.085 36.000 0.00 0.00 0.00 3.41
179 180 5.164282 CGCTCGAAAATGCTTAAAAACTGTC 60.164 40.000 0.00 0.00 0.00 3.51
180 181 4.675114 CGCTCGAAAATGCTTAAAAACTGT 59.325 37.500 0.00 0.00 0.00 3.55
181 182 4.431599 GCGCTCGAAAATGCTTAAAAACTG 60.432 41.667 0.00 0.00 0.00 3.16
182 183 3.668656 GCGCTCGAAAATGCTTAAAAACT 59.331 39.130 0.00 0.00 0.00 2.66
183 184 3.668656 AGCGCTCGAAAATGCTTAAAAAC 59.331 39.130 2.64 0.00 32.89 2.43
184 185 3.668191 CAGCGCTCGAAAATGCTTAAAAA 59.332 39.130 7.13 0.00 34.99 1.94
185 186 3.233578 CAGCGCTCGAAAATGCTTAAAA 58.766 40.909 7.13 0.00 34.99 1.52
186 187 2.414029 CCAGCGCTCGAAAATGCTTAAA 60.414 45.455 7.13 0.00 34.99 1.52
187 188 1.130373 CCAGCGCTCGAAAATGCTTAA 59.870 47.619 7.13 0.00 34.99 1.85
188 189 0.726827 CCAGCGCTCGAAAATGCTTA 59.273 50.000 7.13 0.00 34.99 3.09
189 190 1.237285 ACCAGCGCTCGAAAATGCTT 61.237 50.000 7.13 0.00 34.99 3.91
190 191 1.237285 AACCAGCGCTCGAAAATGCT 61.237 50.000 7.13 0.00 38.43 3.79
191 192 0.387239 AAACCAGCGCTCGAAAATGC 60.387 50.000 7.13 0.00 0.00 3.56
192 193 2.050477 AAAACCAGCGCTCGAAAATG 57.950 45.000 7.13 0.00 0.00 2.32
193 194 2.812011 ACTAAAACCAGCGCTCGAAAAT 59.188 40.909 7.13 0.00 0.00 1.82
194 195 2.032377 CACTAAAACCAGCGCTCGAAAA 60.032 45.455 7.13 0.00 0.00 2.29
195 196 1.529438 CACTAAAACCAGCGCTCGAAA 59.471 47.619 7.13 0.00 0.00 3.46
196 197 1.144969 CACTAAAACCAGCGCTCGAA 58.855 50.000 7.13 0.00 0.00 3.71
197 198 0.032952 ACACTAAAACCAGCGCTCGA 59.967 50.000 7.13 0.00 0.00 4.04
198 199 0.865769 AACACTAAAACCAGCGCTCG 59.134 50.000 7.13 2.49 0.00 5.03
199 200 2.548480 AGAAACACTAAAACCAGCGCTC 59.452 45.455 7.13 0.00 0.00 5.03
200 201 2.572290 AGAAACACTAAAACCAGCGCT 58.428 42.857 2.64 2.64 0.00 5.92
201 202 3.349488 AAGAAACACTAAAACCAGCGC 57.651 42.857 0.00 0.00 0.00 5.92
202 203 5.099575 ACAAAAGAAACACTAAAACCAGCG 58.900 37.500 0.00 0.00 0.00 5.18
203 204 5.518847 GGACAAAAGAAACACTAAAACCAGC 59.481 40.000 0.00 0.00 0.00 4.85
204 205 5.741982 CGGACAAAAGAAACACTAAAACCAG 59.258 40.000 0.00 0.00 0.00 4.00
205 206 5.415077 TCGGACAAAAGAAACACTAAAACCA 59.585 36.000 0.00 0.00 0.00 3.67
206 207 5.882553 TCGGACAAAAGAAACACTAAAACC 58.117 37.500 0.00 0.00 0.00 3.27
207 208 7.698970 TGATTCGGACAAAAGAAACACTAAAAC 59.301 33.333 0.00 0.00 0.00 2.43
208 209 7.763356 TGATTCGGACAAAAGAAACACTAAAA 58.237 30.769 0.00 0.00 0.00 1.52
209 210 7.323049 TGATTCGGACAAAAGAAACACTAAA 57.677 32.000 0.00 0.00 0.00 1.85
210 211 6.928979 TGATTCGGACAAAAGAAACACTAA 57.071 33.333 0.00 0.00 0.00 2.24
211 212 8.610248 TTATGATTCGGACAAAAGAAACACTA 57.390 30.769 0.00 0.00 33.22 2.74
212 213 7.444183 TCTTATGATTCGGACAAAAGAAACACT 59.556 33.333 0.00 0.00 33.22 3.55
213 214 7.581476 TCTTATGATTCGGACAAAAGAAACAC 58.419 34.615 0.00 0.00 33.22 3.32
214 215 7.737972 TCTTATGATTCGGACAAAAGAAACA 57.262 32.000 0.00 0.00 34.52 2.83
215 216 8.902735 GTTTCTTATGATTCGGACAAAAGAAAC 58.097 33.333 17.07 17.07 46.44 2.78
216 217 8.625651 TGTTTCTTATGATTCGGACAAAAGAAA 58.374 29.630 0.00 0.00 38.47 2.52
217 218 8.073768 GTGTTTCTTATGATTCGGACAAAAGAA 58.926 33.333 0.00 0.00 31.58 2.52
218 219 7.570507 CGTGTTTCTTATGATTCGGACAAAAGA 60.571 37.037 0.00 0.00 0.00 2.52
219 220 6.519761 CGTGTTTCTTATGATTCGGACAAAAG 59.480 38.462 0.00 0.00 0.00 2.27
220 221 6.367421 CGTGTTTCTTATGATTCGGACAAAA 58.633 36.000 0.00 0.00 0.00 2.44
221 222 5.106869 CCGTGTTTCTTATGATTCGGACAAA 60.107 40.000 0.00 0.00 39.17 2.83
222 223 4.390603 CCGTGTTTCTTATGATTCGGACAA 59.609 41.667 0.00 0.00 39.17 3.18
223 224 3.930229 CCGTGTTTCTTATGATTCGGACA 59.070 43.478 0.00 0.00 39.17 4.02
224 225 4.178540 TCCGTGTTTCTTATGATTCGGAC 58.821 43.478 0.00 0.00 40.46 4.79
225 226 4.459390 TCCGTGTTTCTTATGATTCGGA 57.541 40.909 0.00 0.00 42.52 4.55
226 227 7.421530 AATATCCGTGTTTCTTATGATTCGG 57.578 36.000 0.00 0.00 38.36 4.30
227 228 7.321271 GCAAATATCCGTGTTTCTTATGATTCG 59.679 37.037 0.00 0.00 0.00 3.34
228 229 8.128582 TGCAAATATCCGTGTTTCTTATGATTC 58.871 33.333 0.00 0.00 0.00 2.52
229 230 7.915397 GTGCAAATATCCGTGTTTCTTATGATT 59.085 33.333 0.00 0.00 0.00 2.57
230 231 7.417612 GTGCAAATATCCGTGTTTCTTATGAT 58.582 34.615 0.00 0.00 0.00 2.45
231 232 6.456315 CGTGCAAATATCCGTGTTTCTTATGA 60.456 38.462 0.00 0.00 0.00 2.15
232 233 5.676744 CGTGCAAATATCCGTGTTTCTTATG 59.323 40.000 0.00 0.00 0.00 1.90
233 234 5.353123 ACGTGCAAATATCCGTGTTTCTTAT 59.647 36.000 0.00 0.00 31.43 1.73
234 235 4.691685 ACGTGCAAATATCCGTGTTTCTTA 59.308 37.500 0.00 0.00 31.43 2.10
235 236 3.500680 ACGTGCAAATATCCGTGTTTCTT 59.499 39.130 0.00 0.00 31.43 2.52
236 237 3.071479 ACGTGCAAATATCCGTGTTTCT 58.929 40.909 0.00 0.00 31.43 2.52
237 238 3.465122 ACGTGCAAATATCCGTGTTTC 57.535 42.857 0.00 0.00 31.43 2.78
238 239 4.393680 ACATACGTGCAAATATCCGTGTTT 59.606 37.500 7.92 0.00 34.95 2.83
239 240 3.936453 ACATACGTGCAAATATCCGTGTT 59.064 39.130 7.92 0.00 34.95 3.32
240 241 3.308595 CACATACGTGCAAATATCCGTGT 59.691 43.478 7.92 0.00 36.06 4.49
241 242 3.860672 CACATACGTGCAAATATCCGTG 58.139 45.455 7.92 2.42 36.06 4.94
253 254 3.882982 TGTTGAATGTTGCACATACGTG 58.117 40.909 0.00 0.00 46.56 4.49
254 255 4.560136 TTGTTGAATGTTGCACATACGT 57.440 36.364 0.00 0.00 37.97 3.57
255 256 5.424518 CATTGTTGAATGTTGCACATACG 57.575 39.130 0.00 0.00 37.97 3.06
266 267 3.132160 TGGCAGCAAACATTGTTGAATG 58.868 40.909 10.53 3.65 43.54 2.67
267 268 3.472283 TGGCAGCAAACATTGTTGAAT 57.528 38.095 10.53 0.00 43.54 2.57
268 269 2.975732 TGGCAGCAAACATTGTTGAA 57.024 40.000 10.53 0.00 43.54 2.69
269 270 2.975732 TTGGCAGCAAACATTGTTGA 57.024 40.000 10.53 0.00 43.54 3.18
270 271 4.352600 TTTTTGGCAGCAAACATTGTTG 57.647 36.364 2.13 2.99 43.66 3.33
271 272 6.690194 TTATTTTTGGCAGCAAACATTGTT 57.310 29.167 0.00 0.00 0.00 2.83
272 273 6.880942 ATTATTTTTGGCAGCAAACATTGT 57.119 29.167 0.00 0.00 0.00 2.71
273 274 7.535940 CAGAATTATTTTTGGCAGCAAACATTG 59.464 33.333 0.00 0.00 0.00 2.82
274 275 7.444792 TCAGAATTATTTTTGGCAGCAAACATT 59.555 29.630 0.00 0.00 0.00 2.71
275 276 6.935771 TCAGAATTATTTTTGGCAGCAAACAT 59.064 30.769 0.00 0.00 0.00 2.71
276 277 6.286758 TCAGAATTATTTTTGGCAGCAAACA 58.713 32.000 0.00 0.00 0.00 2.83
277 278 6.783892 TCAGAATTATTTTTGGCAGCAAAC 57.216 33.333 0.00 0.00 0.00 2.93
278 279 7.160049 TGATCAGAATTATTTTTGGCAGCAAA 58.840 30.769 0.00 0.00 0.00 3.68
279 280 6.699366 TGATCAGAATTATTTTTGGCAGCAA 58.301 32.000 0.00 0.00 0.00 3.91
280 281 6.283544 TGATCAGAATTATTTTTGGCAGCA 57.716 33.333 0.00 0.00 0.00 4.41
281 282 7.781548 AATGATCAGAATTATTTTTGGCAGC 57.218 32.000 0.09 0.00 0.00 5.25
310 311 9.944663 CTTAATTGCGCCTTATGAATAGTAAAA 57.055 29.630 4.18 0.00 0.00 1.52
311 312 8.073768 GCTTAATTGCGCCTTATGAATAGTAAA 58.926 33.333 4.18 0.00 0.00 2.01
312 313 7.444183 AGCTTAATTGCGCCTTATGAATAGTAA 59.556 33.333 4.18 0.00 38.13 2.24
313 314 6.934645 AGCTTAATTGCGCCTTATGAATAGTA 59.065 34.615 4.18 0.00 38.13 1.82
314 315 5.765182 AGCTTAATTGCGCCTTATGAATAGT 59.235 36.000 4.18 0.00 38.13 2.12
315 316 6.246420 AGCTTAATTGCGCCTTATGAATAG 57.754 37.500 4.18 0.00 38.13 1.73
316 317 5.107104 CGAGCTTAATTGCGCCTTATGAATA 60.107 40.000 4.18 0.00 38.13 1.75
317 318 4.319766 CGAGCTTAATTGCGCCTTATGAAT 60.320 41.667 4.18 0.00 38.13 2.57
318 319 3.002246 CGAGCTTAATTGCGCCTTATGAA 59.998 43.478 4.18 0.00 38.13 2.57
319 320 2.543848 CGAGCTTAATTGCGCCTTATGA 59.456 45.455 4.18 0.00 38.13 2.15
320 321 2.349817 CCGAGCTTAATTGCGCCTTATG 60.350 50.000 4.18 6.65 38.13 1.90
321 322 1.873591 CCGAGCTTAATTGCGCCTTAT 59.126 47.619 4.18 0.00 38.13 1.73
322 323 1.295792 CCGAGCTTAATTGCGCCTTA 58.704 50.000 4.18 0.00 38.13 2.69
323 324 1.376609 CCCGAGCTTAATTGCGCCTT 61.377 55.000 4.18 0.38 38.13 4.35
324 325 1.819632 CCCGAGCTTAATTGCGCCT 60.820 57.895 4.18 0.00 38.13 5.52
325 326 1.776034 CTCCCGAGCTTAATTGCGCC 61.776 60.000 4.18 0.00 38.13 6.53
326 327 1.643832 CTCCCGAGCTTAATTGCGC 59.356 57.895 0.00 0.00 38.13 6.09
337 338 1.153667 GCACTCTTCTGCTCCCGAG 60.154 63.158 0.00 0.00 34.06 4.63
338 339 1.607756 AGCACTCTTCTGCTCCCGA 60.608 57.895 0.00 0.00 44.58 5.14
339 340 2.977178 AGCACTCTTCTGCTCCCG 59.023 61.111 0.00 0.00 44.58 5.14
355 356 3.923017 AAACTCCATGGAAAGCGAAAG 57.077 42.857 17.00 3.75 0.00 2.62
356 357 3.005367 GGAAAACTCCATGGAAAGCGAAA 59.995 43.478 17.00 0.00 0.00 3.46
357 358 2.556622 GGAAAACTCCATGGAAAGCGAA 59.443 45.455 17.00 0.00 0.00 4.70
358 359 2.159382 GGAAAACTCCATGGAAAGCGA 58.841 47.619 17.00 0.00 0.00 4.93
359 360 1.885887 TGGAAAACTCCATGGAAAGCG 59.114 47.619 17.00 6.53 34.33 4.68
368 369 6.071952 GCACTTATTCTTGATGGAAAACTCCA 60.072 38.462 0.00 0.00 44.85 3.86
369 370 6.071952 TGCACTTATTCTTGATGGAAAACTCC 60.072 38.462 0.00 0.00 0.00 3.85
370 371 6.913170 TGCACTTATTCTTGATGGAAAACTC 58.087 36.000 0.00 0.00 0.00 3.01
377 378 5.902613 TTCCTTGCACTTATTCTTGATGG 57.097 39.130 0.00 0.00 0.00 3.51
379 380 6.899393 TGTTTCCTTGCACTTATTCTTGAT 57.101 33.333 0.00 0.00 0.00 2.57
384 385 9.860898 AGATTAATTGTTTCCTTGCACTTATTC 57.139 29.630 0.00 0.00 0.00 1.75
386 387 8.806146 ACAGATTAATTGTTTCCTTGCACTTAT 58.194 29.630 0.00 0.00 0.00 1.73
388 389 7.054491 ACAGATTAATTGTTTCCTTGCACTT 57.946 32.000 0.00 0.00 0.00 3.16
404 405 8.560355 TCTAGCAATAGCAACAAACAGATTAA 57.440 30.769 0.00 0.00 45.49 1.40
406 407 6.094603 CCTCTAGCAATAGCAACAAACAGATT 59.905 38.462 0.00 0.00 45.49 2.40
407 408 5.587844 CCTCTAGCAATAGCAACAAACAGAT 59.412 40.000 0.00 0.00 45.49 2.90
408 409 4.937620 CCTCTAGCAATAGCAACAAACAGA 59.062 41.667 0.00 0.00 45.49 3.41
409 410 4.437930 GCCTCTAGCAATAGCAACAAACAG 60.438 45.833 0.00 0.00 45.49 3.16
410 411 3.440173 GCCTCTAGCAATAGCAACAAACA 59.560 43.478 0.00 0.00 45.49 2.83
411 412 4.021191 GCCTCTAGCAATAGCAACAAAC 57.979 45.455 0.00 0.00 45.49 2.93
656 661 2.584064 CTCGGCTGTGGGTGCATA 59.416 61.111 0.00 0.00 0.00 3.14
683 702 1.443802 TTTGAACACAGACACGCACA 58.556 45.000 0.00 0.00 0.00 4.57
685 704 2.351455 TCTTTTGAACACAGACACGCA 58.649 42.857 0.00 0.00 0.00 5.24
706 741 0.178921 TGTCTGGGCCTCTCTTCAGT 60.179 55.000 4.53 0.00 0.00 3.41
708 743 0.906756 CCTGTCTGGGCCTCTCTTCA 60.907 60.000 4.53 0.00 0.00 3.02
788 834 0.386838 GCTTTGCTTTGAGCTGGTGT 59.613 50.000 0.00 0.00 42.97 4.16
831 901 3.680786 TGGGAGTGGAGTGCGACG 61.681 66.667 0.00 0.00 0.00 5.12
832 902 2.048127 GTGGGAGTGGAGTGCGAC 60.048 66.667 0.00 0.00 0.00 5.19
874 944 1.067582 CGGAGATGGGGTTACGAGC 59.932 63.158 0.00 0.00 0.00 5.03
880 950 2.691252 GGGACCGGAGATGGGGTT 60.691 66.667 9.46 0.00 36.46 4.11
945 1039 2.320745 AGAAACAACGAACGTTCCCT 57.679 45.000 22.07 6.83 36.00 4.20
946 1040 3.126073 AGTAGAAACAACGAACGTTCCC 58.874 45.455 22.07 0.00 36.00 3.97
959 1067 4.577693 AGAACCCACCGAAAAAGTAGAAAC 59.422 41.667 0.00 0.00 0.00 2.78
960 1068 4.784177 AGAACCCACCGAAAAAGTAGAAA 58.216 39.130 0.00 0.00 0.00 2.52
961 1069 4.426736 AGAACCCACCGAAAAAGTAGAA 57.573 40.909 0.00 0.00 0.00 2.10
963 1071 4.131596 TCAAGAACCCACCGAAAAAGTAG 58.868 43.478 0.00 0.00 0.00 2.57
965 1073 3.007473 TCAAGAACCCACCGAAAAAGT 57.993 42.857 0.00 0.00 0.00 2.66
966 1074 3.364964 CGATCAAGAACCCACCGAAAAAG 60.365 47.826 0.00 0.00 0.00 2.27
972 1082 2.106683 GGCGATCAAGAACCCACCG 61.107 63.158 0.00 0.00 0.00 4.94
974 1084 2.106683 CCGGCGATCAAGAACCCAC 61.107 63.158 9.30 0.00 0.00 4.61
975 1085 2.267642 CCGGCGATCAAGAACCCA 59.732 61.111 9.30 0.00 0.00 4.51
978 1088 2.606275 GATCCCGGCGATCAAGAAC 58.394 57.895 21.31 0.00 45.92 3.01
1221 1331 0.539669 GGTTGAGGAAGGTGTTGGGG 60.540 60.000 0.00 0.00 0.00 4.96
1437 1547 0.756294 TGAAGCGGTTGGAGTTGAGA 59.244 50.000 3.70 0.00 0.00 3.27
1482 1592 1.064946 CTCGAGCGCGGAGAGATTT 59.935 57.895 22.09 0.00 38.28 2.17
1485 1595 4.779966 ACCTCGAGCGCGGAGAGA 62.780 66.667 26.40 11.80 38.28 3.10
1680 1790 4.095400 AGCTCCTCCGGGATGGGT 62.095 66.667 0.00 0.00 41.36 4.51
1851 1961 0.035630 GCAGGCTGGTGATCTTCTGT 60.036 55.000 17.64 0.00 0.00 3.41
2418 2528 1.900016 CAGGTTCTGCAGCTTGCCA 60.900 57.895 9.47 0.00 44.23 4.92
2677 2787 3.136123 CAATGGCCCGGTGAGCAG 61.136 66.667 0.00 0.00 0.00 4.24
2692 2802 2.151202 GTTCTGAATCGACTTGGGCAA 58.849 47.619 0.00 0.00 0.00 4.52
2784 2894 0.689055 TGATGCTCAGGCTTGACAGT 59.311 50.000 0.00 0.00 39.59 3.55
2860 2970 2.881266 GCGACTGCAACTGCGTCAA 61.881 57.895 19.27 0.00 45.83 3.18
2869 2979 0.880278 GACAGGTCAAGCGACTGCAA 60.880 55.000 0.00 0.00 46.23 4.08
2880 2990 1.375908 GCCATTGCTCGACAGGTCA 60.376 57.895 0.00 0.00 33.53 4.02
3084 3194 1.372997 CTTCAGTGTGGTCCGACGG 60.373 63.158 7.84 7.84 0.00 4.79
3114 3224 1.375908 GGCGCAGACAAGGATCACA 60.376 57.895 10.83 0.00 31.66 3.58
3264 3374 0.901827 TGAGCTTCTGGAATGGCGTA 59.098 50.000 0.00 0.00 0.00 4.42
3342 3452 1.174078 TGTACACGACTCCGGAGCAA 61.174 55.000 31.56 7.61 40.78 3.91
3348 3458 0.179187 CAGCTCTGTACACGACTCCG 60.179 60.000 0.00 0.00 42.50 4.63
3489 3599 2.699954 GAGCAGTAACCAAGCAGCTTA 58.300 47.619 7.52 0.00 31.61 3.09
3576 3686 0.178921 AGTCCAGGCTCCTGTTCTCA 60.179 55.000 14.27 0.00 42.15 3.27
3730 3841 1.975407 CCAGCCCAAAGTCAGCCAG 60.975 63.158 0.00 0.00 0.00 4.85
3765 3876 1.985473 TGGCATGATGATAGTTGGGC 58.015 50.000 0.00 0.00 0.00 5.36
3839 3966 9.250624 ACTATAAGACGAGATAAATGCAAGTTC 57.749 33.333 0.00 0.00 0.00 3.01
3856 3983 8.942338 TGGTGAATGAATGTACACTATAAGAC 57.058 34.615 0.00 0.00 34.28 3.01
3923 4050 9.973450 GTGAATGAATGTACACTATCTGTCTAT 57.027 33.333 0.00 0.00 33.91 1.98
3958 4087 4.155826 CCAAATAATTCACGAAGCTGTGGA 59.844 41.667 4.50 0.00 40.31 4.02
3967 4096 4.634004 CAGCACTACCCAAATAATTCACGA 59.366 41.667 0.00 0.00 0.00 4.35
4015 4144 6.201425 TGTTAAGTTTACTAGAAGCAACCACG 59.799 38.462 0.00 0.00 0.00 4.94
4077 5271 4.667519 AATACCTAGTCACCCGCTTAAG 57.332 45.455 0.00 0.00 0.00 1.85
4126 5330 8.353684 TGAGAAACTCTAGCAGCTATATTGTAC 58.646 37.037 1.54 0.00 0.00 2.90
4132 5336 6.547510 TGATGTGAGAAACTCTAGCAGCTATA 59.452 38.462 1.54 0.00 0.00 1.31
4169 5381 1.933853 AGTCAACGTGCTTCAGTGAAC 59.066 47.619 0.08 0.16 0.00 3.18
4301 5521 4.938226 GGTCCTCTAACTGAAATCACCTTG 59.062 45.833 0.00 0.00 0.00 3.61
4305 5525 4.553330 TGGGTCCTCTAACTGAAATCAC 57.447 45.455 0.00 0.00 0.00 3.06
4324 5544 1.688197 AGGCAAGTGTCAAACCATTGG 59.312 47.619 0.00 0.00 37.15 3.16
4799 6027 6.405872 TCTCATATCATCTCCTGATCTCCT 57.594 41.667 0.00 0.00 43.70 3.69
4893 6123 2.271800 CCAGAATGAGCTACAACGTCC 58.728 52.381 0.00 0.00 39.69 4.79
4937 6169 4.036262 TGTCGCATGAGCAAACTAAAAACT 59.964 37.500 0.00 0.00 42.27 2.66
4953 6187 1.300971 GGCACAGTGATGTGTCGCAT 61.301 55.000 4.15 0.00 41.53 4.73
5029 6273 3.876309 AATAGCCCGGTGGACATTATT 57.124 42.857 0.00 0.00 0.00 1.40
5148 6822 6.634805 TGACCACAAAACAAAAATTCAGCTA 58.365 32.000 0.00 0.00 0.00 3.32
5188 6862 5.404968 CACAAATCTTAAAGCGCAATCCAAA 59.595 36.000 11.47 0.00 0.00 3.28
5268 6946 1.535462 GACTGACCCAAAATCGGTGTG 59.465 52.381 0.00 0.00 35.77 3.82
5274 6952 3.727970 GCGAAATCGACTGACCCAAAATC 60.728 47.826 7.06 0.00 43.02 2.17
5306 6984 0.164217 GCATGCACGCACCAAAATTG 59.836 50.000 14.21 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.