Multiple sequence alignment - TraesCS7B01G260000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G260000 chr7B 100.000 2643 0 0 1 2643 480272683 480270041 0.000000e+00 4881.0
1 TraesCS7B01G260000 chr7B 91.333 300 25 1 2345 2643 333728774 333728475 2.450000e-110 409.0
2 TraesCS7B01G260000 chr7A 93.256 2061 128 9 1 2057 86218696 86216643 0.000000e+00 3025.0
3 TraesCS7B01G260000 chr3B 93.092 2070 133 7 1 2064 200854661 200856726 0.000000e+00 3022.0
4 TraesCS7B01G260000 chr3B 93.169 2064 114 11 1 2061 97753205 97751166 0.000000e+00 3005.0
5 TraesCS7B01G260000 chr3B 92.609 2070 143 7 1 2064 200829752 200831817 0.000000e+00 2966.0
6 TraesCS7B01G260000 chr3B 90.204 2062 149 22 1 2057 496764580 496766593 0.000000e+00 2639.0
7 TraesCS7B01G260000 chr3B 89.880 2075 153 18 1 2061 581033061 581035092 0.000000e+00 2615.0
8 TraesCS7B01G260000 chr3B 91.864 295 24 0 2349 2643 692948199 692947905 1.890000e-111 412.0
9 TraesCS7B01G260000 chr3B 91.186 295 26 0 2349 2643 144681622 144681328 4.100000e-108 401.0
10 TraesCS7B01G260000 chr3B 90.572 297 26 1 2349 2643 535024498 535024794 2.470000e-105 392.0
11 TraesCS7B01G260000 chr3B 90.541 296 27 1 2347 2641 380544052 380543757 8.870000e-105 390.0
12 TraesCS7B01G260000 chr3B 90.169 295 29 0 2349 2643 692906488 692906194 4.130000e-103 385.0
13 TraesCS7B01G260000 chr3B 89.899 297 28 2 2348 2643 447820302 447820007 5.340000e-102 381.0
14 TraesCS7B01G260000 chr3B 97.143 35 0 1 2087 2120 101287956 101287990 1.020000e-04 58.4
15 TraesCS7B01G260000 chr6B 92.778 2063 121 15 1 2057 618934111 618936151 0.000000e+00 2959.0
16 TraesCS7B01G260000 chr6B 92.192 2062 131 18 1 2057 341762652 341760616 0.000000e+00 2889.0
17 TraesCS7B01G260000 chr5B 92.099 2063 154 7 1 2057 503240830 503238771 0.000000e+00 2898.0
18 TraesCS7B01G260000 chr5B 79.137 278 34 18 2058 2317 585812808 585813079 1.260000e-38 171.0
19 TraesCS7B01G260000 chr4D 92.188 2061 133 10 1 2057 345354518 345356554 0.000000e+00 2889.0
20 TraesCS7B01G260000 chr2B 91.828 2068 155 7 1 2064 464671152 464673209 0.000000e+00 2870.0
21 TraesCS7B01G260000 chr1B 90.878 296 27 0 2348 2643 273316323 273316618 5.300000e-107 398.0
22 TraesCS7B01G260000 chr7D 91.126 293 23 3 2058 2348 458518641 458518350 6.860000e-106 394.0
23 TraesCS7B01G260000 chr3D 90.236 297 27 1 2349 2643 540745776 540746072 1.150000e-103 387.0
24 TraesCS7B01G260000 chr4A 77.181 298 50 15 2061 2349 708026629 708026917 9.790000e-35 158.0
25 TraesCS7B01G260000 chr2D 79.167 144 23 5 2133 2270 490803163 490803021 2.800000e-15 93.5
26 TraesCS7B01G260000 chr4B 74.882 211 45 7 2062 2267 460788430 460788223 3.620000e-14 89.8
27 TraesCS7B01G260000 chr2A 85.714 70 10 0 2227 2296 559604526 559604595 1.010000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G260000 chr7B 480270041 480272683 2642 True 4881 4881 100.000 1 2643 1 chr7B.!!$R2 2642
1 TraesCS7B01G260000 chr7A 86216643 86218696 2053 True 3025 3025 93.256 1 2057 1 chr7A.!!$R1 2056
2 TraesCS7B01G260000 chr3B 200854661 200856726 2065 False 3022 3022 93.092 1 2064 1 chr3B.!!$F3 2063
3 TraesCS7B01G260000 chr3B 97751166 97753205 2039 True 3005 3005 93.169 1 2061 1 chr3B.!!$R1 2060
4 TraesCS7B01G260000 chr3B 200829752 200831817 2065 False 2966 2966 92.609 1 2064 1 chr3B.!!$F2 2063
5 TraesCS7B01G260000 chr3B 496764580 496766593 2013 False 2639 2639 90.204 1 2057 1 chr3B.!!$F4 2056
6 TraesCS7B01G260000 chr3B 581033061 581035092 2031 False 2615 2615 89.880 1 2061 1 chr3B.!!$F6 2060
7 TraesCS7B01G260000 chr6B 618934111 618936151 2040 False 2959 2959 92.778 1 2057 1 chr6B.!!$F1 2056
8 TraesCS7B01G260000 chr6B 341760616 341762652 2036 True 2889 2889 92.192 1 2057 1 chr6B.!!$R1 2056
9 TraesCS7B01G260000 chr5B 503238771 503240830 2059 True 2898 2898 92.099 1 2057 1 chr5B.!!$R1 2056
10 TraesCS7B01G260000 chr4D 345354518 345356554 2036 False 2889 2889 92.188 1 2057 1 chr4D.!!$F1 2056
11 TraesCS7B01G260000 chr2B 464671152 464673209 2057 False 2870 2870 91.828 1 2064 1 chr2B.!!$F1 2063

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
926 963 0.034089 GATGGGGAGGTGGAAGTTGG 60.034 60.0 0.0 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2413 2482 0.03582 TTGGGTCATACCAAGCCGTC 60.036 55.0 0.0 0.0 45.19 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 4.181309 CGGTAAGCACTTCTCTCTCTTT 57.819 45.455 0.00 0.00 0.00 2.52
119 120 2.004733 TCTCTCTTTGACATGCATGCG 58.995 47.619 26.53 9.96 0.00 4.73
288 314 1.270835 TGGGGGATAGGGGAATAGGT 58.729 55.000 0.00 0.00 0.00 3.08
415 449 3.062466 CAGCGGGTCGTCCTCTCA 61.062 66.667 0.00 0.00 0.00 3.27
551 585 3.593794 GCGCGATACCCGTCTCCT 61.594 66.667 12.10 0.00 41.15 3.69
559 593 2.717639 TACCCGTCTCCTAGTACACC 57.282 55.000 0.00 0.00 0.00 4.16
678 712 0.394762 ATGATGCCAACTGCCATCGT 60.395 50.000 0.00 0.00 40.16 3.73
763 797 4.272018 GCATTAGATTCGTTCTGCATGTCT 59.728 41.667 0.00 0.00 35.79 3.41
812 846 2.104111 TCCATGGTGTTCTCGAACTTGT 59.896 45.455 12.58 0.00 41.67 3.16
824 858 1.876416 CGAACTTGTTCCGGTCACCAT 60.876 52.381 0.00 0.00 0.00 3.55
832 866 0.694105 TCCGGTCACCATCCATCCAT 60.694 55.000 0.00 0.00 0.00 3.41
917 953 2.366837 TCATGGCGATGGGGAGGT 60.367 61.111 8.98 0.00 0.00 3.85
926 963 0.034089 GATGGGGAGGTGGAAGTTGG 60.034 60.000 0.00 0.00 0.00 3.77
950 988 0.689412 GAGAGAAGAGAGGGGGTGGG 60.689 65.000 0.00 0.00 0.00 4.61
983 1021 5.605488 GGTGGGAAGGGTGAGTAAATATAGA 59.395 44.000 0.00 0.00 0.00 1.98
1033 1075 4.454504 AGTCATGCCGTTTTAACTACAAGG 59.545 41.667 0.00 0.00 0.00 3.61
1056 1098 5.295540 GGTCTTGAATTAGCCATGAACTCTC 59.704 44.000 0.00 0.00 0.00 3.20
1508 1565 3.063725 GCAGCTGTTCATCAGATCAAGAC 59.936 47.826 16.64 0.00 46.27 3.01
1523 1580 1.134401 CAAGACCGGCTACATGGTGAT 60.134 52.381 0.00 0.00 38.99 3.06
1543 1600 0.687354 GTTCAAGCTCCTCACTCCCA 59.313 55.000 0.00 0.00 0.00 4.37
1547 1604 0.689623 AAGCTCCTCACTCCCAACAG 59.310 55.000 0.00 0.00 0.00 3.16
1569 1626 3.494048 GCCTCAAGGTCATCATCTTCGAT 60.494 47.826 0.00 0.00 37.57 3.59
1680 1738 5.862323 GTGTACTATCGAGTCTGCTTTGAAA 59.138 40.000 0.00 0.00 37.10 2.69
1684 1742 3.542712 TCGAGTCTGCTTTGAAAATGC 57.457 42.857 0.00 0.00 46.12 3.56
1791 1856 1.097232 GCTTATGATGTGTGCTGCCA 58.903 50.000 0.00 0.00 0.00 4.92
1905 1970 0.390124 CATGCAGGCAACCAAACACT 59.610 50.000 0.00 0.00 37.17 3.55
1928 1994 1.691196 CAGTGTGGTTCAACCCATGT 58.309 50.000 3.42 0.00 37.50 3.21
1936 2002 3.014623 GGTTCAACCCATGTAGGTAAGC 58.985 50.000 0.00 0.00 40.05 3.09
2024 2093 3.347216 GGTGGAGAAGTGTATGCAATGT 58.653 45.455 0.00 0.00 0.00 2.71
2042 2111 2.415843 GGGCACTATAGCGCACGA 59.584 61.111 11.47 0.00 45.67 4.35
2057 2126 1.450669 ACGACAACCAAACACGCCT 60.451 52.632 0.00 0.00 0.00 5.52
2064 2133 4.076394 ACAACCAAACACGCCTATAATGT 58.924 39.130 0.00 0.00 0.00 2.71
2065 2134 4.083003 ACAACCAAACACGCCTATAATGTG 60.083 41.667 0.00 0.00 39.47 3.21
2067 2136 3.438781 ACCAAACACGCCTATAATGTGTG 59.561 43.478 11.93 11.93 45.48 3.82
2072 2141 4.937696 CACGCCTATAATGTGTGTGAAA 57.062 40.909 7.22 0.00 41.73 2.69
2073 2142 4.897224 CACGCCTATAATGTGTGTGAAAG 58.103 43.478 7.22 0.00 41.73 2.62
2074 2143 4.629634 CACGCCTATAATGTGTGTGAAAGA 59.370 41.667 7.22 0.00 41.73 2.52
2075 2144 5.121611 CACGCCTATAATGTGTGTGAAAGAA 59.878 40.000 7.22 0.00 41.73 2.52
2076 2145 5.351465 ACGCCTATAATGTGTGTGAAAGAAG 59.649 40.000 0.00 0.00 0.00 2.85
2077 2146 5.351465 CGCCTATAATGTGTGTGAAAGAAGT 59.649 40.000 0.00 0.00 0.00 3.01
2078 2147 6.128282 CGCCTATAATGTGTGTGAAAGAAGTT 60.128 38.462 0.00 0.00 0.00 2.66
2079 2148 7.023575 GCCTATAATGTGTGTGAAAGAAGTTG 58.976 38.462 0.00 0.00 0.00 3.16
2080 2149 7.094805 GCCTATAATGTGTGTGAAAGAAGTTGA 60.095 37.037 0.00 0.00 0.00 3.18
2081 2150 8.950210 CCTATAATGTGTGTGAAAGAAGTTGAT 58.050 33.333 0.00 0.00 0.00 2.57
2082 2151 9.979270 CTATAATGTGTGTGAAAGAAGTTGATC 57.021 33.333 0.00 0.00 0.00 2.92
2083 2152 6.698008 AATGTGTGTGAAAGAAGTTGATCA 57.302 33.333 0.00 0.00 0.00 2.92
2084 2153 6.889301 ATGTGTGTGAAAGAAGTTGATCAT 57.111 33.333 0.00 0.00 0.00 2.45
2085 2154 6.063640 TGTGTGTGAAAGAAGTTGATCATG 57.936 37.500 0.00 0.00 0.00 3.07
2086 2155 5.589855 TGTGTGTGAAAGAAGTTGATCATGT 59.410 36.000 0.00 0.00 0.00 3.21
2087 2156 6.765512 TGTGTGTGAAAGAAGTTGATCATGTA 59.234 34.615 0.00 0.00 0.00 2.29
2088 2157 7.281999 TGTGTGTGAAAGAAGTTGATCATGTAA 59.718 33.333 0.00 0.00 0.00 2.41
2089 2158 8.292448 GTGTGTGAAAGAAGTTGATCATGTAAT 58.708 33.333 0.00 0.00 0.00 1.89
2090 2159 8.849168 TGTGTGAAAGAAGTTGATCATGTAATT 58.151 29.630 0.00 0.00 0.00 1.40
2213 2282 8.795786 TTGTGTTAGAAACATGTTAATGAAGC 57.204 30.769 12.39 1.93 44.35 3.86
2214 2283 7.935520 TGTGTTAGAAACATGTTAATGAAGCA 58.064 30.769 12.39 4.52 44.35 3.91
2215 2284 8.575589 TGTGTTAGAAACATGTTAATGAAGCAT 58.424 29.630 12.39 0.00 44.35 3.79
2216 2285 9.410556 GTGTTAGAAACATGTTAATGAAGCATT 57.589 29.630 12.39 0.00 44.35 3.56
2217 2286 9.979578 TGTTAGAAACATGTTAATGAAGCATTT 57.020 25.926 12.39 0.00 36.25 2.32
2221 2290 9.545105 AGAAACATGTTAATGAAGCATTTGAAA 57.455 25.926 12.39 0.00 37.24 2.69
2267 2336 7.656707 AAAATGTTGACCATGCATAAGAAAC 57.343 32.000 0.00 3.30 32.82 2.78
2268 2337 6.594788 AATGTTGACCATGCATAAGAAACT 57.405 33.333 0.00 0.00 32.82 2.66
2269 2338 5.375417 TGTTGACCATGCATAAGAAACTG 57.625 39.130 0.00 0.00 0.00 3.16
2270 2339 4.826733 TGTTGACCATGCATAAGAAACTGT 59.173 37.500 0.00 0.00 0.00 3.55
2271 2340 5.301551 TGTTGACCATGCATAAGAAACTGTT 59.698 36.000 0.00 0.00 0.00 3.16
2272 2341 6.488344 TGTTGACCATGCATAAGAAACTGTTA 59.512 34.615 0.00 0.00 0.00 2.41
2273 2342 7.013750 TGTTGACCATGCATAAGAAACTGTTAA 59.986 33.333 0.00 0.00 0.00 2.01
2274 2343 7.517614 TGACCATGCATAAGAAACTGTTAAA 57.482 32.000 0.00 0.00 0.00 1.52
2275 2344 7.367285 TGACCATGCATAAGAAACTGTTAAAC 58.633 34.615 0.00 0.00 0.00 2.01
2276 2345 7.230510 TGACCATGCATAAGAAACTGTTAAACT 59.769 33.333 0.00 0.00 0.00 2.66
2277 2346 7.951591 ACCATGCATAAGAAACTGTTAAACTT 58.048 30.769 0.00 3.52 0.00 2.66
2278 2347 7.867403 ACCATGCATAAGAAACTGTTAAACTTG 59.133 33.333 0.00 4.13 0.00 3.16
2279 2348 7.867403 CCATGCATAAGAAACTGTTAAACTTGT 59.133 33.333 0.00 7.61 0.00 3.16
2280 2349 8.693504 CATGCATAAGAAACTGTTAAACTTGTG 58.306 33.333 17.85 17.85 34.51 3.33
2281 2350 7.767261 TGCATAAGAAACTGTTAAACTTGTGT 58.233 30.769 20.39 7.72 34.13 3.72
2282 2351 8.247562 TGCATAAGAAACTGTTAAACTTGTGTT 58.752 29.630 20.39 4.68 38.16 3.32
2283 2352 9.083080 GCATAAGAAACTGTTAAACTTGTGTTT 57.917 29.630 20.39 0.00 46.74 2.83
2300 2369 9.965824 ACTTGTGTTTAAGAAATGTTAATCTGG 57.034 29.630 0.00 0.00 0.00 3.86
2301 2370 8.810652 TTGTGTTTAAGAAATGTTAATCTGGC 57.189 30.769 0.00 0.00 0.00 4.85
2302 2371 7.375053 TGTGTTTAAGAAATGTTAATCTGGCC 58.625 34.615 0.00 0.00 0.00 5.36
2303 2372 7.232534 TGTGTTTAAGAAATGTTAATCTGGCCT 59.767 33.333 3.32 0.00 0.00 5.19
2304 2373 8.088365 GTGTTTAAGAAATGTTAATCTGGCCTT 58.912 33.333 3.32 0.00 0.00 4.35
2305 2374 8.646900 TGTTTAAGAAATGTTAATCTGGCCTTT 58.353 29.630 3.32 0.00 0.00 3.11
2306 2375 8.925700 GTTTAAGAAATGTTAATCTGGCCTTTG 58.074 33.333 3.32 0.00 0.00 2.77
2307 2376 6.916360 AAGAAATGTTAATCTGGCCTTTGA 57.084 33.333 3.32 0.00 0.00 2.69
2308 2377 6.916360 AGAAATGTTAATCTGGCCTTTGAA 57.084 33.333 3.32 0.00 0.00 2.69
2309 2378 7.301868 AGAAATGTTAATCTGGCCTTTGAAA 57.698 32.000 3.32 0.00 0.00 2.69
2310 2379 7.734942 AGAAATGTTAATCTGGCCTTTGAAAA 58.265 30.769 3.32 0.00 0.00 2.29
2311 2380 8.377799 AGAAATGTTAATCTGGCCTTTGAAAAT 58.622 29.630 3.32 0.00 0.00 1.82
2312 2381 8.552083 AAATGTTAATCTGGCCTTTGAAAATC 57.448 30.769 3.32 0.00 0.00 2.17
2313 2382 6.916360 TGTTAATCTGGCCTTTGAAAATCT 57.084 33.333 3.32 0.00 0.00 2.40
2314 2383 7.301868 TGTTAATCTGGCCTTTGAAAATCTT 57.698 32.000 3.32 0.00 0.00 2.40
2315 2384 8.415950 TGTTAATCTGGCCTTTGAAAATCTTA 57.584 30.769 3.32 0.00 0.00 2.10
2316 2385 8.865090 TGTTAATCTGGCCTTTGAAAATCTTAA 58.135 29.630 3.32 0.00 0.00 1.85
2317 2386 9.705290 GTTAATCTGGCCTTTGAAAATCTTAAA 57.295 29.630 3.32 0.00 0.00 1.52
2320 2389 8.782339 ATCTGGCCTTTGAAAATCTTAAAATG 57.218 30.769 3.32 0.00 0.00 2.32
2321 2390 7.734942 TCTGGCCTTTGAAAATCTTAAAATGT 58.265 30.769 3.32 0.00 0.00 2.71
2322 2391 7.656948 TCTGGCCTTTGAAAATCTTAAAATGTG 59.343 33.333 3.32 0.00 0.00 3.21
2323 2392 7.278875 TGGCCTTTGAAAATCTTAAAATGTGT 58.721 30.769 3.32 0.00 0.00 3.72
2324 2393 8.424918 TGGCCTTTGAAAATCTTAAAATGTGTA 58.575 29.630 3.32 0.00 0.00 2.90
2325 2394 9.435688 GGCCTTTGAAAATCTTAAAATGTGTAT 57.564 29.630 0.00 0.00 0.00 2.29
2353 2422 6.677781 ATATGTTGACCACTTATTTGTCGG 57.322 37.500 0.00 0.00 0.00 4.79
2354 2423 3.811083 TGTTGACCACTTATTTGTCGGT 58.189 40.909 0.00 0.00 0.00 4.69
2355 2424 3.562141 TGTTGACCACTTATTTGTCGGTG 59.438 43.478 0.00 0.00 0.00 4.94
2356 2425 3.478857 TGACCACTTATTTGTCGGTGT 57.521 42.857 0.00 0.00 0.00 4.16
2357 2426 3.395639 TGACCACTTATTTGTCGGTGTC 58.604 45.455 0.00 0.00 0.00 3.67
2358 2427 3.181464 TGACCACTTATTTGTCGGTGTCA 60.181 43.478 0.00 0.00 0.00 3.58
2359 2428 4.000988 GACCACTTATTTGTCGGTGTCAT 58.999 43.478 0.00 0.00 0.00 3.06
2360 2429 3.751175 ACCACTTATTTGTCGGTGTCATG 59.249 43.478 0.00 0.00 0.00 3.07
2361 2430 3.126858 CCACTTATTTGTCGGTGTCATGG 59.873 47.826 0.00 0.00 0.00 3.66
2362 2431 4.000325 CACTTATTTGTCGGTGTCATGGA 59.000 43.478 0.00 0.00 0.00 3.41
2363 2432 4.635765 CACTTATTTGTCGGTGTCATGGAT 59.364 41.667 0.00 0.00 0.00 3.41
2364 2433 5.123820 CACTTATTTGTCGGTGTCATGGATT 59.876 40.000 0.00 0.00 0.00 3.01
2365 2434 5.354234 ACTTATTTGTCGGTGTCATGGATTC 59.646 40.000 0.00 0.00 0.00 2.52
2366 2435 1.720805 TTGTCGGTGTCATGGATTCG 58.279 50.000 0.00 0.00 0.00 3.34
2367 2436 0.108377 TGTCGGTGTCATGGATTCGG 60.108 55.000 0.00 0.00 0.00 4.30
2368 2437 0.810031 GTCGGTGTCATGGATTCGGG 60.810 60.000 0.00 0.00 0.00 5.14
2369 2438 1.523711 CGGTGTCATGGATTCGGGG 60.524 63.158 0.00 0.00 0.00 5.73
2370 2439 1.152963 GGTGTCATGGATTCGGGGG 60.153 63.158 0.00 0.00 0.00 5.40
2371 2440 1.607612 GTGTCATGGATTCGGGGGT 59.392 57.895 0.00 0.00 0.00 4.95
2372 2441 0.834612 GTGTCATGGATTCGGGGGTA 59.165 55.000 0.00 0.00 0.00 3.69
2373 2442 1.420138 GTGTCATGGATTCGGGGGTAT 59.580 52.381 0.00 0.00 0.00 2.73
2374 2443 1.697432 TGTCATGGATTCGGGGGTATC 59.303 52.381 0.00 0.00 0.00 2.24
2375 2444 1.003233 GTCATGGATTCGGGGGTATCC 59.997 57.143 0.00 0.00 40.62 2.59
2377 2446 2.848608 TGGATTCGGGGGTATCCAG 58.151 57.895 0.00 0.00 44.04 3.86
2378 2447 1.375326 GGATTCGGGGGTATCCAGC 59.625 63.158 0.00 0.00 40.08 4.85
2379 2448 1.375326 GATTCGGGGGTATCCAGCC 59.625 63.158 0.00 0.00 41.95 4.85
2385 2454 4.420741 GGGTATCCAGCCCTTCCT 57.579 61.111 0.00 0.00 42.81 3.36
2386 2455 1.839894 GGGTATCCAGCCCTTCCTG 59.160 63.158 0.00 0.00 42.81 3.86
2387 2456 1.149401 GGTATCCAGCCCTTCCTGC 59.851 63.158 0.00 0.00 0.00 4.85
2388 2457 1.149401 GTATCCAGCCCTTCCTGCC 59.851 63.158 0.00 0.00 0.00 4.85
2389 2458 1.004758 TATCCAGCCCTTCCTGCCT 59.995 57.895 0.00 0.00 0.00 4.75
2390 2459 1.348008 TATCCAGCCCTTCCTGCCTG 61.348 60.000 0.00 0.00 0.00 4.85
2413 2482 3.168271 CACCACGTGGCTTCATCG 58.832 61.111 34.26 8.61 39.32 3.84
2414 2483 1.374125 CACCACGTGGCTTCATCGA 60.374 57.895 34.26 0.00 39.32 3.59
2415 2484 1.374252 ACCACGTGGCTTCATCGAC 60.374 57.895 34.26 0.00 39.32 4.20
2416 2485 2.444624 CCACGTGGCTTCATCGACG 61.445 63.158 24.02 0.00 37.82 5.12
2417 2486 2.126071 ACGTGGCTTCATCGACGG 60.126 61.111 0.00 0.00 36.14 4.79
2418 2487 3.554692 CGTGGCTTCATCGACGGC 61.555 66.667 0.00 0.00 0.00 5.68
2419 2488 2.125512 GTGGCTTCATCGACGGCT 60.126 61.111 0.00 0.00 0.00 5.52
2420 2489 1.741770 GTGGCTTCATCGACGGCTT 60.742 57.895 0.00 0.00 0.00 4.35
2421 2490 1.741401 TGGCTTCATCGACGGCTTG 60.741 57.895 0.00 0.00 0.00 4.01
2422 2491 2.464459 GGCTTCATCGACGGCTTGG 61.464 63.158 0.00 0.00 0.00 3.61
2423 2492 1.741770 GCTTCATCGACGGCTTGGT 60.742 57.895 0.00 0.00 0.00 3.67
2424 2493 0.459585 GCTTCATCGACGGCTTGGTA 60.460 55.000 0.00 0.00 0.00 3.25
2425 2494 1.806623 GCTTCATCGACGGCTTGGTAT 60.807 52.381 0.00 0.00 0.00 2.73
2426 2495 1.860950 CTTCATCGACGGCTTGGTATG 59.139 52.381 0.00 0.00 0.00 2.39
2427 2496 1.107945 TCATCGACGGCTTGGTATGA 58.892 50.000 0.00 0.00 0.00 2.15
2428 2497 1.202371 TCATCGACGGCTTGGTATGAC 60.202 52.381 0.00 0.00 0.00 3.06
2429 2498 0.104304 ATCGACGGCTTGGTATGACC 59.896 55.000 0.00 0.00 39.22 4.02
2430 2499 1.520787 CGACGGCTTGGTATGACCC 60.521 63.158 0.00 0.00 37.50 4.46
2431 2500 1.600107 GACGGCTTGGTATGACCCA 59.400 57.895 0.00 0.00 37.50 4.51
2432 2501 0.035820 GACGGCTTGGTATGACCCAA 60.036 55.000 0.00 0.00 42.16 4.12
2433 2502 0.322187 ACGGCTTGGTATGACCCAAC 60.322 55.000 0.00 0.00 39.56 3.77
2434 2503 0.035439 CGGCTTGGTATGACCCAACT 60.035 55.000 0.00 0.00 39.56 3.16
2435 2504 1.613255 CGGCTTGGTATGACCCAACTT 60.613 52.381 0.00 0.00 39.56 2.66
2436 2505 2.092323 GGCTTGGTATGACCCAACTTC 58.908 52.381 0.00 0.00 39.56 3.01
2437 2506 2.554344 GGCTTGGTATGACCCAACTTCA 60.554 50.000 0.00 0.00 39.56 3.02
2438 2507 3.153919 GCTTGGTATGACCCAACTTCAA 58.846 45.455 0.00 0.00 39.56 2.69
2439 2508 3.057526 GCTTGGTATGACCCAACTTCAAC 60.058 47.826 0.00 0.00 39.56 3.18
2440 2509 3.866703 TGGTATGACCCAACTTCAACA 57.133 42.857 0.00 0.00 37.50 3.33
2441 2510 4.380843 TGGTATGACCCAACTTCAACAT 57.619 40.909 0.00 0.00 37.50 2.71
2442 2511 4.331968 TGGTATGACCCAACTTCAACATC 58.668 43.478 0.00 0.00 37.50 3.06
2443 2512 4.202514 TGGTATGACCCAACTTCAACATCA 60.203 41.667 0.00 0.00 37.50 3.07
2444 2513 4.764823 GGTATGACCCAACTTCAACATCAA 59.235 41.667 0.00 0.00 30.04 2.57
2445 2514 4.853924 ATGACCCAACTTCAACATCAAC 57.146 40.909 0.00 0.00 0.00 3.18
2446 2515 3.625853 TGACCCAACTTCAACATCAACA 58.374 40.909 0.00 0.00 0.00 3.33
2447 2516 4.019858 TGACCCAACTTCAACATCAACAA 58.980 39.130 0.00 0.00 0.00 2.83
2448 2517 4.142271 TGACCCAACTTCAACATCAACAAC 60.142 41.667 0.00 0.00 0.00 3.32
2449 2518 3.766591 ACCCAACTTCAACATCAACAACA 59.233 39.130 0.00 0.00 0.00 3.33
2450 2519 4.111916 CCCAACTTCAACATCAACAACAC 58.888 43.478 0.00 0.00 0.00 3.32
2451 2520 4.381398 CCCAACTTCAACATCAACAACACA 60.381 41.667 0.00 0.00 0.00 3.72
2452 2521 5.167121 CCAACTTCAACATCAACAACACAA 58.833 37.500 0.00 0.00 0.00 3.33
2453 2522 5.289193 CCAACTTCAACATCAACAACACAAG 59.711 40.000 0.00 0.00 0.00 3.16
2454 2523 5.895636 ACTTCAACATCAACAACACAAGA 57.104 34.783 0.00 0.00 0.00 3.02
2455 2524 5.640732 ACTTCAACATCAACAACACAAGAC 58.359 37.500 0.00 0.00 0.00 3.01
2456 2525 4.630894 TCAACATCAACAACACAAGACC 57.369 40.909 0.00 0.00 0.00 3.85
2457 2526 3.380004 TCAACATCAACAACACAAGACCC 59.620 43.478 0.00 0.00 0.00 4.46
2458 2527 3.297134 ACATCAACAACACAAGACCCT 57.703 42.857 0.00 0.00 0.00 4.34
2459 2528 3.214328 ACATCAACAACACAAGACCCTC 58.786 45.455 0.00 0.00 0.00 4.30
2460 2529 2.341846 TCAACAACACAAGACCCTCC 57.658 50.000 0.00 0.00 0.00 4.30
2461 2530 1.843851 TCAACAACACAAGACCCTCCT 59.156 47.619 0.00 0.00 0.00 3.69
2462 2531 1.949525 CAACAACACAAGACCCTCCTG 59.050 52.381 0.00 0.00 0.00 3.86
2463 2532 1.507140 ACAACACAAGACCCTCCTGA 58.493 50.000 0.00 0.00 0.00 3.86
2464 2533 1.417890 ACAACACAAGACCCTCCTGAG 59.582 52.381 0.00 0.00 0.00 3.35
2473 2542 4.120755 CCTCCTGAGGGGCCAAGC 62.121 72.222 4.39 0.00 44.87 4.01
2503 2572 3.423154 GCGACGCCAAGAACCCTG 61.423 66.667 9.14 0.00 0.00 4.45
2504 2573 2.342279 CGACGCCAAGAACCCTGA 59.658 61.111 0.00 0.00 0.00 3.86
2505 2574 1.301401 CGACGCCAAGAACCCTGAA 60.301 57.895 0.00 0.00 0.00 3.02
2506 2575 1.291877 CGACGCCAAGAACCCTGAAG 61.292 60.000 0.00 0.00 0.00 3.02
2507 2576 0.955919 GACGCCAAGAACCCTGAAGG 60.956 60.000 0.00 0.00 43.78 3.46
2508 2577 1.374947 CGCCAAGAACCCTGAAGGA 59.625 57.895 0.00 0.00 39.89 3.36
2509 2578 0.250727 CGCCAAGAACCCTGAAGGAA 60.251 55.000 0.00 0.00 39.89 3.36
2510 2579 1.248486 GCCAAGAACCCTGAAGGAAC 58.752 55.000 0.00 0.00 39.89 3.62
2511 2580 1.911057 CCAAGAACCCTGAAGGAACC 58.089 55.000 0.00 0.00 39.89 3.62
2512 2581 1.523758 CAAGAACCCTGAAGGAACCG 58.476 55.000 0.00 0.00 39.89 4.44
2513 2582 0.400594 AAGAACCCTGAAGGAACCGG 59.599 55.000 0.00 0.00 39.89 5.28
2514 2583 1.674651 GAACCCTGAAGGAACCGGC 60.675 63.158 0.00 0.00 39.89 6.13
2515 2584 3.205851 AACCCTGAAGGAACCGGCC 62.206 63.158 0.00 0.00 39.89 6.13
2516 2585 3.330720 CCCTGAAGGAACCGGCCT 61.331 66.667 0.00 0.00 40.93 5.19
2517 2586 2.269241 CCTGAAGGAACCGGCCTC 59.731 66.667 0.00 0.00 37.26 4.70
2518 2587 2.269241 CTGAAGGAACCGGCCTCC 59.731 66.667 14.18 14.18 37.26 4.30
2519 2588 2.203938 TGAAGGAACCGGCCTCCT 60.204 61.111 18.06 18.06 45.66 3.69
2520 2589 2.245438 CTGAAGGAACCGGCCTCCTC 62.245 65.000 22.67 16.64 42.77 3.71
2521 2590 2.203938 AAGGAACCGGCCTCCTCA 60.204 61.111 22.67 0.00 42.77 3.86
2522 2591 2.245438 GAAGGAACCGGCCTCCTCAG 62.245 65.000 22.67 0.00 42.77 3.35
2523 2592 3.787001 GGAACCGGCCTCCTCAGG 61.787 72.222 14.64 0.00 43.82 3.86
2531 2600 3.478274 CCTCCTCAGGCTGGCTCC 61.478 72.222 15.73 0.00 30.98 4.70
2532 2601 2.365370 CTCCTCAGGCTGGCTCCT 60.365 66.667 15.73 0.00 36.78 3.69
2546 2615 3.673597 TCCTGAGGGGCGGAGAGT 61.674 66.667 0.00 0.00 34.39 3.24
2547 2616 2.685380 CCTGAGGGGCGGAGAGTT 60.685 66.667 0.00 0.00 0.00 3.01
2548 2617 2.726351 CCTGAGGGGCGGAGAGTTC 61.726 68.421 0.00 0.00 0.00 3.01
2549 2618 1.684049 CTGAGGGGCGGAGAGTTCT 60.684 63.158 0.00 0.00 0.00 3.01
2550 2619 0.395862 CTGAGGGGCGGAGAGTTCTA 60.396 60.000 0.00 0.00 0.00 2.10
2551 2620 0.261991 TGAGGGGCGGAGAGTTCTAT 59.738 55.000 0.00 0.00 0.00 1.98
2552 2621 0.676736 GAGGGGCGGAGAGTTCTATG 59.323 60.000 0.00 0.00 0.00 2.23
2553 2622 1.069935 GGGGCGGAGAGTTCTATGC 59.930 63.158 0.00 0.00 0.00 3.14
2554 2623 1.686325 GGGGCGGAGAGTTCTATGCA 61.686 60.000 0.00 0.00 0.00 3.96
2555 2624 0.178068 GGGCGGAGAGTTCTATGCAA 59.822 55.000 0.00 0.00 0.00 4.08
2556 2625 1.576356 GGCGGAGAGTTCTATGCAAG 58.424 55.000 0.00 0.00 0.00 4.01
2557 2626 0.933796 GCGGAGAGTTCTATGCAAGC 59.066 55.000 0.00 0.00 0.00 4.01
2558 2627 1.472376 GCGGAGAGTTCTATGCAAGCT 60.472 52.381 0.00 0.00 0.00 3.74
2559 2628 2.223829 GCGGAGAGTTCTATGCAAGCTA 60.224 50.000 0.00 0.00 0.00 3.32
2560 2629 3.376540 CGGAGAGTTCTATGCAAGCTAC 58.623 50.000 0.00 0.00 0.00 3.58
2561 2630 3.723260 GGAGAGTTCTATGCAAGCTACC 58.277 50.000 0.00 0.00 0.00 3.18
2562 2631 3.386402 GGAGAGTTCTATGCAAGCTACCT 59.614 47.826 0.00 0.00 0.00 3.08
2563 2632 4.500716 GGAGAGTTCTATGCAAGCTACCTC 60.501 50.000 0.00 0.00 0.00 3.85
2564 2633 4.026744 AGAGTTCTATGCAAGCTACCTCA 58.973 43.478 0.00 0.00 0.00 3.86
2565 2634 4.116238 GAGTTCTATGCAAGCTACCTCAC 58.884 47.826 0.00 0.00 0.00 3.51
2566 2635 2.860735 GTTCTATGCAAGCTACCTCACG 59.139 50.000 0.00 0.00 0.00 4.35
2567 2636 2.375146 TCTATGCAAGCTACCTCACGA 58.625 47.619 0.00 0.00 0.00 4.35
2568 2637 2.359214 TCTATGCAAGCTACCTCACGAG 59.641 50.000 0.00 0.00 0.00 4.18
2577 2646 2.183811 CCTCACGAGGCTCAGCTG 59.816 66.667 15.95 7.63 42.44 4.24
2578 2647 2.346541 CCTCACGAGGCTCAGCTGA 61.347 63.158 17.19 17.19 42.44 4.26
2579 2648 1.153862 CTCACGAGGCTCAGCTGAC 60.154 63.158 13.74 9.94 0.00 3.51
2580 2649 2.505777 CACGAGGCTCAGCTGACG 60.506 66.667 13.74 17.22 0.00 4.35
2581 2650 2.986413 ACGAGGCTCAGCTGACGT 60.986 61.111 20.56 20.56 0.00 4.34
2582 2651 2.505777 CGAGGCTCAGCTGACGTG 60.506 66.667 13.74 4.50 0.00 4.49
2583 2652 2.965783 GAGGCTCAGCTGACGTGA 59.034 61.111 13.74 0.00 0.00 4.35
2584 2653 1.153862 GAGGCTCAGCTGACGTGAG 60.154 63.158 13.74 3.66 43.77 3.51
2587 2656 2.653115 CTCAGCTGACGTGAGCCA 59.347 61.111 23.75 9.70 40.08 4.75
2588 2657 1.217511 CTCAGCTGACGTGAGCCAT 59.782 57.895 23.75 2.74 40.08 4.40
2589 2658 1.079612 TCAGCTGACGTGAGCCATG 60.080 57.895 23.75 16.05 40.08 3.66
2590 2659 1.079612 CAGCTGACGTGAGCCATGA 60.080 57.895 23.75 0.00 40.08 3.07
2591 2660 1.079543 AGCTGACGTGAGCCATGAC 60.080 57.895 23.75 0.00 40.08 3.06
2592 2661 2.447887 GCTGACGTGAGCCATGACG 61.448 63.158 16.82 0.00 41.41 4.35
2593 2662 1.212751 CTGACGTGAGCCATGACGA 59.787 57.895 11.17 0.00 38.94 4.20
2594 2663 1.073216 CTGACGTGAGCCATGACGAC 61.073 60.000 11.17 6.02 38.94 4.34
2595 2664 1.805945 GACGTGAGCCATGACGACC 60.806 63.158 11.17 0.29 38.94 4.79
2596 2665 2.261361 CGTGAGCCATGACGACCA 59.739 61.111 0.00 0.00 37.81 4.02
2597 2666 1.374125 CGTGAGCCATGACGACCAA 60.374 57.895 0.00 0.00 37.81 3.67
2598 2667 1.354337 CGTGAGCCATGACGACCAAG 61.354 60.000 0.00 0.00 37.81 3.61
2599 2668 1.021390 GTGAGCCATGACGACCAAGG 61.021 60.000 0.00 0.00 36.73 3.61
2600 2669 1.296715 GAGCCATGACGACCAAGGT 59.703 57.895 0.00 0.00 36.08 3.50
2601 2670 0.321653 GAGCCATGACGACCAAGGTT 60.322 55.000 0.00 0.00 36.08 3.50
2602 2671 0.981183 AGCCATGACGACCAAGGTTA 59.019 50.000 0.00 0.00 36.08 2.85
2603 2672 1.066143 AGCCATGACGACCAAGGTTAG 60.066 52.381 0.00 0.00 36.08 2.34
2604 2673 2.012051 GCCATGACGACCAAGGTTAGG 61.012 57.143 0.00 0.00 36.08 2.69
2605 2674 1.369625 CATGACGACCAAGGTTAGGC 58.630 55.000 0.00 0.00 0.00 3.93
2606 2675 0.108329 ATGACGACCAAGGTTAGGCG 60.108 55.000 0.00 0.00 33.79 5.52
2607 2676 1.447314 GACGACCAAGGTTAGGCGG 60.447 63.158 0.00 0.00 32.52 6.13
2608 2677 2.125269 CGACCAAGGTTAGGCGGG 60.125 66.667 0.00 0.00 0.00 6.13
2609 2678 2.437895 GACCAAGGTTAGGCGGGC 60.438 66.667 0.00 0.00 0.00 6.13
2610 2679 4.404098 ACCAAGGTTAGGCGGGCG 62.404 66.667 0.00 0.00 0.00 6.13
2613 2682 4.778143 AAGGTTAGGCGGGCGCAG 62.778 66.667 10.83 3.20 44.11 5.18
2627 2696 2.359230 GCAGAGCGCAGGTTTCCT 60.359 61.111 11.47 0.00 39.88 3.36
2628 2697 2.394563 GCAGAGCGCAGGTTTCCTC 61.395 63.158 11.47 0.00 39.88 3.71
2629 2698 1.294780 CAGAGCGCAGGTTTCCTCT 59.705 57.895 11.47 0.00 39.88 3.69
2630 2699 0.321122 CAGAGCGCAGGTTTCCTCTT 60.321 55.000 11.47 0.00 39.88 2.85
2631 2700 0.036858 AGAGCGCAGGTTTCCTCTTC 60.037 55.000 11.47 0.00 39.88 2.87
2632 2701 1.355066 GAGCGCAGGTTTCCTCTTCG 61.355 60.000 11.47 0.00 39.88 3.79
2633 2702 2.391389 GCGCAGGTTTCCTCTTCGG 61.391 63.158 0.30 0.00 0.00 4.30
2634 2703 1.004918 CGCAGGTTTCCTCTTCGGT 60.005 57.895 0.00 0.00 0.00 4.69
2635 2704 1.291877 CGCAGGTTTCCTCTTCGGTG 61.292 60.000 0.00 0.00 0.00 4.94
2636 2705 1.578206 GCAGGTTTCCTCTTCGGTGC 61.578 60.000 0.00 0.00 0.00 5.01
2637 2706 0.250295 CAGGTTTCCTCTTCGGTGCA 60.250 55.000 0.00 0.00 0.00 4.57
2638 2707 0.472471 AGGTTTCCTCTTCGGTGCAA 59.528 50.000 0.00 0.00 0.00 4.08
2639 2708 1.133915 AGGTTTCCTCTTCGGTGCAAA 60.134 47.619 0.00 0.00 0.00 3.68
2640 2709 1.266989 GGTTTCCTCTTCGGTGCAAAG 59.733 52.381 0.00 0.00 0.00 2.77
2641 2710 1.266989 GTTTCCTCTTCGGTGCAAAGG 59.733 52.381 0.00 0.00 0.00 3.11
2642 2711 0.762418 TTCCTCTTCGGTGCAAAGGA 59.238 50.000 0.00 0.00 34.36 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 0.374410 CGAATCACGCATGCATGTCA 59.626 50.000 26.79 9.65 34.51 3.58
119 120 1.858091 ATCGCTGTGGATCGAATCAC 58.142 50.000 12.70 12.70 38.28 3.06
288 314 0.108963 CGTTGTGTACCCCCTTTCCA 59.891 55.000 0.00 0.00 0.00 3.53
551 585 2.409055 ATCGTGCCGCGGTGTACTA 61.409 57.895 28.70 15.54 41.72 1.82
559 593 1.821241 CTAATGACCATCGTGCCGCG 61.821 60.000 0.00 0.00 43.01 6.46
704 738 4.512484 GCCACTAAAGAAGAGCTGAAGAT 58.488 43.478 0.00 0.00 0.00 2.40
812 846 0.912006 TGGATGGATGGTGACCGGAA 60.912 55.000 9.46 0.00 0.00 4.30
824 858 2.042464 CTTCTTCCTCGGATGGATGGA 58.958 52.381 0.00 0.00 35.83 3.41
832 866 1.686110 GAGGGCCTTCTTCCTCGGA 60.686 63.158 7.89 0.00 39.95 4.55
917 953 1.423584 TCTCTCACTGCCAACTTCCA 58.576 50.000 0.00 0.00 0.00 3.53
926 963 0.823460 CCCCTCTCTTCTCTCACTGC 59.177 60.000 0.00 0.00 0.00 4.40
950 988 3.264964 TCACCCTTCCCACCACTATTTAC 59.735 47.826 0.00 0.00 0.00 2.01
983 1021 1.220236 CTTCTCCTCCTCTCCATCCCT 59.780 57.143 0.00 0.00 0.00 4.20
1033 1075 6.036953 CAGAGAGTTCATGGCTAATTCAAGAC 59.963 42.308 0.00 0.00 0.00 3.01
1128 1170 1.447317 CTTGCCCTTGCTGTCAACGT 61.447 55.000 0.00 0.00 38.71 3.99
1193 1245 1.104630 GTCTTCGGGTCTTCCTCGAT 58.895 55.000 0.00 0.00 36.72 3.59
1328 1385 0.322816 GGGGATGCACTCAAGCTTCA 60.323 55.000 0.00 0.00 39.62 3.02
1357 1414 3.325870 CGATGAAGTGCTTGGTGAAGTA 58.674 45.455 0.00 0.00 0.00 2.24
1462 1519 2.166346 TGGCCCAACCCTGATCCAA 61.166 57.895 0.00 0.00 37.83 3.53
1508 1565 1.299541 GAACATCACCATGTAGCCGG 58.700 55.000 0.00 0.00 42.89 6.13
1523 1580 0.687354 GGGAGTGAGGAGCTTGAACA 59.313 55.000 0.00 0.00 0.00 3.18
1543 1600 2.575279 AGATGATGACCTTGAGGCTGTT 59.425 45.455 0.00 0.00 39.32 3.16
1547 1604 2.159043 TCGAAGATGATGACCTTGAGGC 60.159 50.000 0.00 0.00 39.32 4.70
1569 1626 0.460109 CGACCTCAATGCCATCGTCA 60.460 55.000 0.00 0.00 0.00 4.35
1680 1738 5.574891 TCAACGCATAAACCATAAGCATT 57.425 34.783 0.00 0.00 0.00 3.56
1684 1742 5.938322 ACAGTTCAACGCATAAACCATAAG 58.062 37.500 0.00 0.00 0.00 1.73
1905 1970 0.109723 GGGTTGAACCACACTGCCTA 59.890 55.000 17.27 0.00 41.02 3.93
1928 1994 1.146041 CTGCATGCCCGCTTACCTA 59.854 57.895 16.68 0.00 0.00 3.08
1993 2059 3.190738 TTCTCCACCCAACCTGGCG 62.191 63.158 0.00 0.00 35.79 5.69
2042 2111 4.076394 ACATTATAGGCGTGTTTGGTTGT 58.924 39.130 0.00 0.00 0.00 3.32
2057 2126 9.500785 TGATCAACTTCTTTCACACACATTATA 57.499 29.630 0.00 0.00 0.00 0.98
2064 2133 7.800155 TTACATGATCAACTTCTTTCACACA 57.200 32.000 0.00 0.00 0.00 3.72
2095 2164 9.615295 GCATTTTTCAAATGCTTGATTAACATT 57.385 25.926 21.63 0.00 46.92 2.71
2187 2256 8.905702 GCTTCATTAACATGTTTCTAACACAAG 58.094 33.333 17.78 8.88 45.50 3.16
2188 2257 8.409371 TGCTTCATTAACATGTTTCTAACACAA 58.591 29.630 17.78 2.35 45.50 3.33
2189 2258 7.935520 TGCTTCATTAACATGTTTCTAACACA 58.064 30.769 17.78 5.93 45.50 3.72
2190 2259 8.970691 ATGCTTCATTAACATGTTTCTAACAC 57.029 30.769 17.78 3.33 45.50 3.32
2191 2260 9.979578 AAATGCTTCATTAACATGTTTCTAACA 57.020 25.926 17.78 7.53 38.27 2.41
2195 2264 9.545105 TTTCAAATGCTTCATTAACATGTTTCT 57.455 25.926 17.78 1.33 32.43 2.52
2242 2311 7.933033 AGTTTCTTATGCATGGTCAACATTTTT 59.067 29.630 10.16 0.00 37.84 1.94
2243 2312 7.385752 CAGTTTCTTATGCATGGTCAACATTTT 59.614 33.333 10.16 0.00 37.84 1.82
2244 2313 6.869913 CAGTTTCTTATGCATGGTCAACATTT 59.130 34.615 10.16 0.00 37.84 2.32
2245 2314 6.015180 ACAGTTTCTTATGCATGGTCAACATT 60.015 34.615 10.16 0.00 37.84 2.71
2246 2315 5.477984 ACAGTTTCTTATGCATGGTCAACAT 59.522 36.000 10.16 0.00 41.57 2.71
2247 2316 4.826733 ACAGTTTCTTATGCATGGTCAACA 59.173 37.500 10.16 0.00 0.00 3.33
2248 2317 5.376854 ACAGTTTCTTATGCATGGTCAAC 57.623 39.130 10.16 7.43 0.00 3.18
2249 2318 7.517614 TTAACAGTTTCTTATGCATGGTCAA 57.482 32.000 10.16 0.00 0.00 3.18
2250 2319 7.230510 AGTTTAACAGTTTCTTATGCATGGTCA 59.769 33.333 10.16 0.00 0.00 4.02
2251 2320 7.593825 AGTTTAACAGTTTCTTATGCATGGTC 58.406 34.615 10.16 0.00 0.00 4.02
2252 2321 7.524717 AGTTTAACAGTTTCTTATGCATGGT 57.475 32.000 10.16 0.00 0.00 3.55
2253 2322 7.867403 ACAAGTTTAACAGTTTCTTATGCATGG 59.133 33.333 10.16 2.09 0.00 3.66
2254 2323 8.693504 CACAAGTTTAACAGTTTCTTATGCATG 58.306 33.333 10.16 0.00 0.00 4.06
2255 2324 8.413229 ACACAAGTTTAACAGTTTCTTATGCAT 58.587 29.630 3.79 3.79 0.00 3.96
2256 2325 7.767261 ACACAAGTTTAACAGTTTCTTATGCA 58.233 30.769 0.00 0.00 0.00 3.96
2257 2326 8.628882 AACACAAGTTTAACAGTTTCTTATGC 57.371 30.769 0.00 0.00 33.11 3.14
2274 2343 9.965824 CCAGATTAACATTTCTTAAACACAAGT 57.034 29.630 0.00 0.00 0.00 3.16
2275 2344 8.915654 GCCAGATTAACATTTCTTAAACACAAG 58.084 33.333 0.00 0.00 0.00 3.16
2276 2345 7.870445 GGCCAGATTAACATTTCTTAAACACAA 59.130 33.333 0.00 0.00 0.00 3.33
2277 2346 7.232534 AGGCCAGATTAACATTTCTTAAACACA 59.767 33.333 5.01 0.00 0.00 3.72
2278 2347 7.602753 AGGCCAGATTAACATTTCTTAAACAC 58.397 34.615 5.01 0.00 0.00 3.32
2279 2348 7.775053 AGGCCAGATTAACATTTCTTAAACA 57.225 32.000 5.01 0.00 0.00 2.83
2280 2349 8.925700 CAAAGGCCAGATTAACATTTCTTAAAC 58.074 33.333 5.01 0.00 0.00 2.01
2281 2350 8.865090 TCAAAGGCCAGATTAACATTTCTTAAA 58.135 29.630 5.01 0.00 0.00 1.52
2282 2351 8.415950 TCAAAGGCCAGATTAACATTTCTTAA 57.584 30.769 5.01 0.00 0.00 1.85
2283 2352 8.415950 TTCAAAGGCCAGATTAACATTTCTTA 57.584 30.769 5.01 0.00 0.00 2.10
2284 2353 6.916360 TCAAAGGCCAGATTAACATTTCTT 57.084 33.333 5.01 0.00 0.00 2.52
2285 2354 6.916360 TTCAAAGGCCAGATTAACATTTCT 57.084 33.333 5.01 0.00 0.00 2.52
2286 2355 7.961325 TTTTCAAAGGCCAGATTAACATTTC 57.039 32.000 5.01 0.00 0.00 2.17
2287 2356 8.377799 AGATTTTCAAAGGCCAGATTAACATTT 58.622 29.630 5.01 0.00 0.00 2.32
2288 2357 7.910584 AGATTTTCAAAGGCCAGATTAACATT 58.089 30.769 5.01 0.00 0.00 2.71
2289 2358 7.486407 AGATTTTCAAAGGCCAGATTAACAT 57.514 32.000 5.01 0.00 0.00 2.71
2290 2359 6.916360 AGATTTTCAAAGGCCAGATTAACA 57.084 33.333 5.01 0.00 0.00 2.41
2291 2360 9.705290 TTTAAGATTTTCAAAGGCCAGATTAAC 57.295 29.630 5.01 0.00 0.00 2.01
2294 2363 9.223099 CATTTTAAGATTTTCAAAGGCCAGATT 57.777 29.630 5.01 0.00 0.00 2.40
2295 2364 8.377799 ACATTTTAAGATTTTCAAAGGCCAGAT 58.622 29.630 5.01 0.00 0.00 2.90
2296 2365 7.656948 CACATTTTAAGATTTTCAAAGGCCAGA 59.343 33.333 5.01 0.00 0.00 3.86
2297 2366 7.442062 ACACATTTTAAGATTTTCAAAGGCCAG 59.558 33.333 5.01 0.00 0.00 4.85
2298 2367 7.278875 ACACATTTTAAGATTTTCAAAGGCCA 58.721 30.769 5.01 0.00 0.00 5.36
2299 2368 7.728847 ACACATTTTAAGATTTTCAAAGGCC 57.271 32.000 0.00 0.00 0.00 5.19
2327 2396 8.670135 CCGACAAATAAGTGGTCAACATATTTA 58.330 33.333 1.23 0.00 39.47 1.40
2328 2397 7.175990 ACCGACAAATAAGTGGTCAACATATTT 59.824 33.333 0.00 0.00 41.19 1.40
2329 2398 6.657541 ACCGACAAATAAGTGGTCAACATATT 59.342 34.615 0.00 0.00 34.85 1.28
2330 2399 6.093495 CACCGACAAATAAGTGGTCAACATAT 59.907 38.462 0.00 0.00 0.00 1.78
2331 2400 5.410132 CACCGACAAATAAGTGGTCAACATA 59.590 40.000 0.00 0.00 0.00 2.29
2332 2401 4.215399 CACCGACAAATAAGTGGTCAACAT 59.785 41.667 0.00 0.00 0.00 2.71
2333 2402 3.562141 CACCGACAAATAAGTGGTCAACA 59.438 43.478 0.00 0.00 0.00 3.33
2334 2403 3.562557 ACACCGACAAATAAGTGGTCAAC 59.437 43.478 0.00 0.00 34.50 3.18
2335 2404 3.810941 GACACCGACAAATAAGTGGTCAA 59.189 43.478 0.00 0.00 34.50 3.18
2336 2405 3.181464 TGACACCGACAAATAAGTGGTCA 60.181 43.478 0.00 0.00 34.50 4.02
2337 2406 3.395639 TGACACCGACAAATAAGTGGTC 58.604 45.455 0.00 0.00 34.50 4.02
2338 2407 3.478857 TGACACCGACAAATAAGTGGT 57.521 42.857 0.00 0.00 34.50 4.16
2339 2408 3.126858 CCATGACACCGACAAATAAGTGG 59.873 47.826 0.00 0.00 34.50 4.00
2340 2409 4.000325 TCCATGACACCGACAAATAAGTG 59.000 43.478 0.00 0.00 36.30 3.16
2341 2410 4.280436 TCCATGACACCGACAAATAAGT 57.720 40.909 0.00 0.00 0.00 2.24
2342 2411 5.502382 CGAATCCATGACACCGACAAATAAG 60.502 44.000 0.00 0.00 0.00 1.73
2343 2412 4.331443 CGAATCCATGACACCGACAAATAA 59.669 41.667 0.00 0.00 0.00 1.40
2344 2413 3.868661 CGAATCCATGACACCGACAAATA 59.131 43.478 0.00 0.00 0.00 1.40
2345 2414 2.677836 CGAATCCATGACACCGACAAAT 59.322 45.455 0.00 0.00 0.00 2.32
2346 2415 2.073056 CGAATCCATGACACCGACAAA 58.927 47.619 0.00 0.00 0.00 2.83
2347 2416 1.674519 CCGAATCCATGACACCGACAA 60.675 52.381 0.00 0.00 0.00 3.18
2348 2417 0.108377 CCGAATCCATGACACCGACA 60.108 55.000 0.00 0.00 0.00 4.35
2349 2418 0.810031 CCCGAATCCATGACACCGAC 60.810 60.000 0.00 0.00 0.00 4.79
2350 2419 1.520192 CCCGAATCCATGACACCGA 59.480 57.895 0.00 0.00 0.00 4.69
2351 2420 1.523711 CCCCGAATCCATGACACCG 60.524 63.158 0.00 0.00 0.00 4.94
2352 2421 1.152963 CCCCCGAATCCATGACACC 60.153 63.158 0.00 0.00 0.00 4.16
2353 2422 0.834612 TACCCCCGAATCCATGACAC 59.165 55.000 0.00 0.00 0.00 3.67
2354 2423 1.697432 GATACCCCCGAATCCATGACA 59.303 52.381 0.00 0.00 0.00 3.58
2355 2424 1.003233 GGATACCCCCGAATCCATGAC 59.997 57.143 0.00 0.00 41.21 3.06
2356 2425 1.358152 GGATACCCCCGAATCCATGA 58.642 55.000 0.00 0.00 41.21 3.07
2357 2426 1.064003 TGGATACCCCCGAATCCATG 58.936 55.000 0.00 0.00 45.28 3.66
2358 2427 3.589232 TGGATACCCCCGAATCCAT 57.411 52.632 0.00 0.00 45.28 3.41
2360 2429 1.375326 GCTGGATACCCCCGAATCC 59.625 63.158 0.00 0.00 41.81 3.01
2361 2430 1.375326 GGCTGGATACCCCCGAATC 59.625 63.158 0.00 0.00 0.00 2.52
2362 2431 2.154074 GGGCTGGATACCCCCGAAT 61.154 63.158 0.00 0.00 42.01 3.34
2363 2432 2.770904 GGGCTGGATACCCCCGAA 60.771 66.667 0.00 0.00 42.01 4.30
2369 2438 1.149401 GCAGGAAGGGCTGGATACC 59.851 63.158 0.00 0.00 0.00 2.73
2370 2439 1.149401 GGCAGGAAGGGCTGGATAC 59.851 63.158 0.00 0.00 0.00 2.24
2371 2440 1.004758 AGGCAGGAAGGGCTGGATA 59.995 57.895 0.00 0.00 42.76 2.59
2372 2441 2.286732 AGGCAGGAAGGGCTGGAT 60.287 61.111 0.00 0.00 42.76 3.41
2396 2465 1.374125 TCGATGAAGCCACGTGGTG 60.374 57.895 33.92 11.99 37.57 4.17
2397 2466 1.374252 GTCGATGAAGCCACGTGGT 60.374 57.895 33.92 17.27 37.57 4.16
2398 2467 2.444624 CGTCGATGAAGCCACGTGG 61.445 63.158 30.66 30.66 38.53 4.94
2399 2468 2.444624 CCGTCGATGAAGCCACGTG 61.445 63.158 9.08 9.08 0.00 4.49
2400 2469 2.126071 CCGTCGATGAAGCCACGT 60.126 61.111 6.11 0.00 0.00 4.49
2401 2470 3.554692 GCCGTCGATGAAGCCACG 61.555 66.667 6.11 0.00 0.00 4.94
2402 2471 1.741770 AAGCCGTCGATGAAGCCAC 60.742 57.895 6.11 0.00 0.00 5.01
2403 2472 1.741401 CAAGCCGTCGATGAAGCCA 60.741 57.895 6.11 0.00 0.00 4.75
2404 2473 2.464459 CCAAGCCGTCGATGAAGCC 61.464 63.158 6.11 0.00 0.00 4.35
2405 2474 0.459585 TACCAAGCCGTCGATGAAGC 60.460 55.000 6.11 1.61 0.00 3.86
2406 2475 1.860950 CATACCAAGCCGTCGATGAAG 59.139 52.381 6.11 0.00 0.00 3.02
2407 2476 1.478916 TCATACCAAGCCGTCGATGAA 59.521 47.619 6.11 0.00 0.00 2.57
2408 2477 1.107945 TCATACCAAGCCGTCGATGA 58.892 50.000 6.11 0.00 0.00 2.92
2409 2478 1.209128 GTCATACCAAGCCGTCGATG 58.791 55.000 0.00 0.00 0.00 3.84
2410 2479 0.104304 GGTCATACCAAGCCGTCGAT 59.896 55.000 0.00 0.00 38.42 3.59
2411 2480 1.514087 GGTCATACCAAGCCGTCGA 59.486 57.895 0.00 0.00 38.42 4.20
2412 2481 1.520787 GGGTCATACCAAGCCGTCG 60.521 63.158 0.00 0.00 41.02 5.12
2413 2482 0.035820 TTGGGTCATACCAAGCCGTC 60.036 55.000 0.00 0.00 45.19 4.79
2414 2483 2.071502 TTGGGTCATACCAAGCCGT 58.928 52.632 0.00 0.00 45.19 5.68
2420 2489 3.866703 TGTTGAAGTTGGGTCATACCA 57.133 42.857 0.00 0.00 41.02 3.25
2421 2490 4.331968 TGATGTTGAAGTTGGGTCATACC 58.668 43.478 0.00 0.00 37.60 2.73
2422 2491 5.240623 TGTTGATGTTGAAGTTGGGTCATAC 59.759 40.000 0.00 0.00 0.00 2.39
2423 2492 5.380900 TGTTGATGTTGAAGTTGGGTCATA 58.619 37.500 0.00 0.00 0.00 2.15
2424 2493 4.214310 TGTTGATGTTGAAGTTGGGTCAT 58.786 39.130 0.00 0.00 0.00 3.06
2425 2494 3.625853 TGTTGATGTTGAAGTTGGGTCA 58.374 40.909 0.00 0.00 0.00 4.02
2426 2495 4.142271 TGTTGTTGATGTTGAAGTTGGGTC 60.142 41.667 0.00 0.00 0.00 4.46
2427 2496 3.766591 TGTTGTTGATGTTGAAGTTGGGT 59.233 39.130 0.00 0.00 0.00 4.51
2428 2497 4.111916 GTGTTGTTGATGTTGAAGTTGGG 58.888 43.478 0.00 0.00 0.00 4.12
2429 2498 4.742417 TGTGTTGTTGATGTTGAAGTTGG 58.258 39.130 0.00 0.00 0.00 3.77
2430 2499 6.033831 GTCTTGTGTTGTTGATGTTGAAGTTG 59.966 38.462 0.00 0.00 0.00 3.16
2431 2500 6.092748 GTCTTGTGTTGTTGATGTTGAAGTT 58.907 36.000 0.00 0.00 0.00 2.66
2432 2501 5.393027 GGTCTTGTGTTGTTGATGTTGAAGT 60.393 40.000 0.00 0.00 0.00 3.01
2433 2502 5.036737 GGTCTTGTGTTGTTGATGTTGAAG 58.963 41.667 0.00 0.00 0.00 3.02
2434 2503 4.142271 GGGTCTTGTGTTGTTGATGTTGAA 60.142 41.667 0.00 0.00 0.00 2.69
2435 2504 3.380004 GGGTCTTGTGTTGTTGATGTTGA 59.620 43.478 0.00 0.00 0.00 3.18
2436 2505 3.381272 AGGGTCTTGTGTTGTTGATGTTG 59.619 43.478 0.00 0.00 0.00 3.33
2437 2506 3.631250 AGGGTCTTGTGTTGTTGATGTT 58.369 40.909 0.00 0.00 0.00 2.71
2438 2507 3.214328 GAGGGTCTTGTGTTGTTGATGT 58.786 45.455 0.00 0.00 0.00 3.06
2439 2508 2.554032 GGAGGGTCTTGTGTTGTTGATG 59.446 50.000 0.00 0.00 0.00 3.07
2440 2509 2.443255 AGGAGGGTCTTGTGTTGTTGAT 59.557 45.455 0.00 0.00 0.00 2.57
2441 2510 1.843851 AGGAGGGTCTTGTGTTGTTGA 59.156 47.619 0.00 0.00 0.00 3.18
2442 2511 1.949525 CAGGAGGGTCTTGTGTTGTTG 59.050 52.381 0.00 0.00 0.00 3.33
2443 2512 1.843851 TCAGGAGGGTCTTGTGTTGTT 59.156 47.619 0.00 0.00 0.00 2.83
2444 2513 1.417890 CTCAGGAGGGTCTTGTGTTGT 59.582 52.381 0.00 0.00 0.00 3.32
2445 2514 1.271054 CCTCAGGAGGGTCTTGTGTTG 60.271 57.143 7.48 0.00 44.87 3.33
2446 2515 1.059913 CCTCAGGAGGGTCTTGTGTT 58.940 55.000 7.48 0.00 44.87 3.32
2447 2516 2.765352 CCTCAGGAGGGTCTTGTGT 58.235 57.895 7.48 0.00 44.87 3.72
2457 2526 4.120755 GGCTTGGCCCCTCAGGAG 62.121 72.222 0.00 0.00 44.06 3.69
2486 2555 3.423154 CAGGGTTCTTGGCGTCGC 61.423 66.667 9.22 9.22 0.00 5.19
2487 2556 1.291877 CTTCAGGGTTCTTGGCGTCG 61.292 60.000 0.00 0.00 0.00 5.12
2488 2557 0.955919 CCTTCAGGGTTCTTGGCGTC 60.956 60.000 0.00 0.00 0.00 5.19
2489 2558 1.073199 CCTTCAGGGTTCTTGGCGT 59.927 57.895 0.00 0.00 0.00 5.68
2490 2559 0.250727 TTCCTTCAGGGTTCTTGGCG 60.251 55.000 0.00 0.00 36.25 5.69
2491 2560 1.248486 GTTCCTTCAGGGTTCTTGGC 58.752 55.000 0.00 0.00 36.25 4.52
2492 2561 1.882352 CGGTTCCTTCAGGGTTCTTGG 60.882 57.143 0.00 0.00 36.25 3.61
2493 2562 1.523758 CGGTTCCTTCAGGGTTCTTG 58.476 55.000 0.00 0.00 36.25 3.02
2494 2563 0.400594 CCGGTTCCTTCAGGGTTCTT 59.599 55.000 0.00 0.00 36.25 2.52
2495 2564 2.067197 CCGGTTCCTTCAGGGTTCT 58.933 57.895 0.00 0.00 36.25 3.01
2496 2565 1.674651 GCCGGTTCCTTCAGGGTTC 60.675 63.158 1.90 0.00 36.25 3.62
2497 2566 2.434774 GCCGGTTCCTTCAGGGTT 59.565 61.111 1.90 0.00 36.25 4.11
2498 2567 3.647771 GGCCGGTTCCTTCAGGGT 61.648 66.667 1.90 0.00 36.25 4.34
2499 2568 3.330720 AGGCCGGTTCCTTCAGGG 61.331 66.667 1.90 0.00 30.82 4.45
2500 2569 2.269241 GAGGCCGGTTCCTTCAGG 59.731 66.667 1.90 0.00 36.38 3.86
2501 2570 2.245438 GAGGAGGCCGGTTCCTTCAG 62.245 65.000 24.66 0.00 45.00 3.02
2502 2571 2.203938 AGGAGGCCGGTTCCTTCA 60.204 61.111 20.13 0.00 42.40 3.02
2503 2572 2.245438 CTGAGGAGGCCGGTTCCTTC 62.245 65.000 24.66 13.60 45.00 3.46
2504 2573 2.203938 TGAGGAGGCCGGTTCCTT 60.204 61.111 24.66 12.67 45.00 3.36
2506 2575 3.787001 CCTGAGGAGGCCGGTTCC 61.787 72.222 16.68 16.68 30.52 3.62
2514 2583 3.478274 GGAGCCAGCCTGAGGAGG 61.478 72.222 0.65 4.04 43.19 4.30
2515 2584 2.365370 AGGAGCCAGCCTGAGGAG 60.365 66.667 0.65 0.00 36.76 3.69
2529 2598 3.239627 AACTCTCCGCCCCTCAGGA 62.240 63.158 0.00 0.00 38.24 3.86
2530 2599 2.685380 AACTCTCCGCCCCTCAGG 60.685 66.667 0.00 0.00 39.47 3.86
2531 2600 0.395862 TAGAACTCTCCGCCCCTCAG 60.396 60.000 0.00 0.00 0.00 3.35
2532 2601 0.261991 ATAGAACTCTCCGCCCCTCA 59.738 55.000 0.00 0.00 0.00 3.86
2533 2602 0.676736 CATAGAACTCTCCGCCCCTC 59.323 60.000 0.00 0.00 0.00 4.30
2534 2603 1.403687 GCATAGAACTCTCCGCCCCT 61.404 60.000 0.00 0.00 0.00 4.79
2535 2604 1.069935 GCATAGAACTCTCCGCCCC 59.930 63.158 0.00 0.00 0.00 5.80
2536 2605 0.178068 TTGCATAGAACTCTCCGCCC 59.822 55.000 0.00 0.00 0.00 6.13
2537 2606 1.576356 CTTGCATAGAACTCTCCGCC 58.424 55.000 0.00 0.00 0.00 6.13
2538 2607 0.933796 GCTTGCATAGAACTCTCCGC 59.066 55.000 0.00 0.00 0.00 5.54
2539 2608 2.593346 AGCTTGCATAGAACTCTCCG 57.407 50.000 0.00 0.00 0.00 4.63
2540 2609 3.386402 AGGTAGCTTGCATAGAACTCTCC 59.614 47.826 0.00 0.00 0.00 3.71
2541 2610 4.098654 TGAGGTAGCTTGCATAGAACTCTC 59.901 45.833 0.00 0.00 0.00 3.20
2542 2611 4.026744 TGAGGTAGCTTGCATAGAACTCT 58.973 43.478 0.00 0.00 0.00 3.24
2543 2612 4.116238 GTGAGGTAGCTTGCATAGAACTC 58.884 47.826 0.00 0.00 0.00 3.01
2544 2613 3.429547 CGTGAGGTAGCTTGCATAGAACT 60.430 47.826 0.00 0.00 0.00 3.01
2545 2614 2.860735 CGTGAGGTAGCTTGCATAGAAC 59.139 50.000 0.00 0.00 0.00 3.01
2546 2615 2.758423 TCGTGAGGTAGCTTGCATAGAA 59.242 45.455 0.00 0.00 0.00 2.10
2547 2616 2.359214 CTCGTGAGGTAGCTTGCATAGA 59.641 50.000 0.00 0.00 0.00 1.98
2548 2617 2.544694 CCTCGTGAGGTAGCTTGCATAG 60.545 54.545 7.79 0.00 43.61 2.23
2549 2618 1.409064 CCTCGTGAGGTAGCTTGCATA 59.591 52.381 7.79 0.00 43.61 3.14
2550 2619 0.176680 CCTCGTGAGGTAGCTTGCAT 59.823 55.000 7.79 0.00 43.61 3.96
2551 2620 1.591703 CCTCGTGAGGTAGCTTGCA 59.408 57.895 7.79 0.00 43.61 4.08
2552 2621 4.504132 CCTCGTGAGGTAGCTTGC 57.496 61.111 7.79 0.00 43.61 4.01
2561 2630 1.153862 GTCAGCTGAGCCTCGTGAG 60.154 63.158 18.89 0.00 0.00 3.51
2562 2631 2.965783 GTCAGCTGAGCCTCGTGA 59.034 61.111 18.89 0.00 0.00 4.35
2563 2632 2.505777 CGTCAGCTGAGCCTCGTG 60.506 66.667 18.89 0.00 0.00 4.35
2564 2633 2.986413 ACGTCAGCTGAGCCTCGT 60.986 61.111 18.89 19.91 0.00 4.18
2565 2634 2.505777 CACGTCAGCTGAGCCTCG 60.506 66.667 18.89 19.20 0.00 4.63
2566 2635 1.153862 CTCACGTCAGCTGAGCCTC 60.154 63.158 18.89 4.09 0.00 4.70
2567 2636 2.969016 CTCACGTCAGCTGAGCCT 59.031 61.111 18.89 0.00 0.00 4.58
2570 2639 1.082679 CATGGCTCACGTCAGCTGAG 61.083 60.000 18.89 13.73 39.58 3.35
2571 2640 1.079612 CATGGCTCACGTCAGCTGA 60.080 57.895 13.74 13.74 39.58 4.26
2572 2641 1.079612 TCATGGCTCACGTCAGCTG 60.080 57.895 12.34 7.63 39.58 4.24
2573 2642 1.079543 GTCATGGCTCACGTCAGCT 60.080 57.895 12.34 0.00 39.58 4.24
2574 2643 2.447887 CGTCATGGCTCACGTCAGC 61.448 63.158 1.34 1.34 38.84 4.26
2575 2644 1.073216 GTCGTCATGGCTCACGTCAG 61.073 60.000 0.00 0.00 37.30 3.51
2576 2645 1.080772 GTCGTCATGGCTCACGTCA 60.081 57.895 0.00 0.00 37.30 4.35
2577 2646 1.805945 GGTCGTCATGGCTCACGTC 60.806 63.158 0.00 0.00 37.30 4.34
2578 2647 2.094757 TTGGTCGTCATGGCTCACGT 62.095 55.000 0.00 0.00 37.30 4.49
2579 2648 1.354337 CTTGGTCGTCATGGCTCACG 61.354 60.000 0.00 0.00 37.36 4.35
2580 2649 1.021390 CCTTGGTCGTCATGGCTCAC 61.021 60.000 0.00 0.00 34.50 3.51
2581 2650 1.296392 CCTTGGTCGTCATGGCTCA 59.704 57.895 0.00 0.00 34.50 4.26
2582 2651 0.321653 AACCTTGGTCGTCATGGCTC 60.322 55.000 0.00 0.00 42.58 4.70
2583 2652 0.981183 TAACCTTGGTCGTCATGGCT 59.019 50.000 0.00 4.78 42.58 4.75
2584 2653 1.369625 CTAACCTTGGTCGTCATGGC 58.630 55.000 11.23 0.00 42.58 4.40
2585 2654 2.012051 GCCTAACCTTGGTCGTCATGG 61.012 57.143 0.00 10.24 43.92 3.66
2586 2655 1.369625 GCCTAACCTTGGTCGTCATG 58.630 55.000 0.00 0.00 0.00 3.07
2587 2656 0.108329 CGCCTAACCTTGGTCGTCAT 60.108 55.000 0.00 0.00 0.00 3.06
2588 2657 1.290955 CGCCTAACCTTGGTCGTCA 59.709 57.895 0.00 0.00 0.00 4.35
2589 2658 1.447314 CCGCCTAACCTTGGTCGTC 60.447 63.158 0.00 0.00 0.00 4.20
2590 2659 2.660802 CCGCCTAACCTTGGTCGT 59.339 61.111 0.00 0.00 0.00 4.34
2591 2660 2.125269 CCCGCCTAACCTTGGTCG 60.125 66.667 0.00 0.00 0.00 4.79
2592 2661 2.437895 GCCCGCCTAACCTTGGTC 60.438 66.667 0.00 0.00 0.00 4.02
2593 2662 4.404098 CGCCCGCCTAACCTTGGT 62.404 66.667 0.00 0.00 0.00 3.67
2596 2665 4.778143 CTGCGCCCGCCTAACCTT 62.778 66.667 4.18 0.00 41.09 3.50
2610 2679 2.359230 AGGAAACCTGCGCTCTGC 60.359 61.111 9.73 0.00 46.70 4.26
2611 2680 0.321122 AAGAGGAAACCTGCGCTCTG 60.321 55.000 9.73 0.00 31.76 3.35
2612 2681 0.036858 GAAGAGGAAACCTGCGCTCT 60.037 55.000 9.73 0.00 31.76 4.09
2613 2682 1.355066 CGAAGAGGAAACCTGCGCTC 61.355 60.000 9.73 0.00 31.76 5.03
2614 2683 1.374758 CGAAGAGGAAACCTGCGCT 60.375 57.895 9.73 0.00 31.76 5.92
2615 2684 2.391389 CCGAAGAGGAAACCTGCGC 61.391 63.158 0.00 0.00 45.00 6.09
2616 2685 1.004918 ACCGAAGAGGAAACCTGCG 60.005 57.895 0.00 0.00 45.00 5.18
2617 2686 1.578206 GCACCGAAGAGGAAACCTGC 61.578 60.000 0.00 0.00 45.00 4.85
2618 2687 0.250295 TGCACCGAAGAGGAAACCTG 60.250 55.000 0.00 0.00 45.00 4.00
2619 2688 0.472471 TTGCACCGAAGAGGAAACCT 59.528 50.000 0.00 0.00 45.00 3.50
2620 2689 1.266989 CTTTGCACCGAAGAGGAAACC 59.733 52.381 0.00 0.00 45.00 3.27
2621 2690 1.266989 CCTTTGCACCGAAGAGGAAAC 59.733 52.381 0.00 0.00 45.00 2.78
2622 2691 1.142060 TCCTTTGCACCGAAGAGGAAA 59.858 47.619 0.00 0.00 45.00 3.13
2623 2692 0.762418 TCCTTTGCACCGAAGAGGAA 59.238 50.000 0.00 0.00 45.00 3.36
2624 2693 2.447630 TCCTTTGCACCGAAGAGGA 58.552 52.632 0.00 0.00 45.00 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.