Multiple sequence alignment - TraesCS7B01G259900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G259900 chr7B 100.000 3464 0 0 1 3464 480207006 480203543 0.000000e+00 6397.0
1 TraesCS7B01G259900 chr7D 93.081 2587 110 24 1 2539 458355883 458353318 0.000000e+00 3722.0
2 TraesCS7B01G259900 chr7D 89.888 356 31 1 3114 3464 458349787 458349432 1.470000e-123 453.0
3 TraesCS7B01G259900 chr7D 89.015 264 24 3 3114 3373 374147237 374147499 4.310000e-84 322.0
4 TraesCS7B01G259900 chr7D 94.231 208 10 2 2907 3112 161930919 161930712 2.010000e-82 316.0
5 TraesCS7B01G259900 chr7D 93.720 207 11 2 2907 3111 326052551 326052757 3.360000e-80 309.0
6 TraesCS7B01G259900 chr7D 92.093 215 14 3 2900 3111 127735323 127735109 2.020000e-77 300.0
7 TraesCS7B01G259900 chr7D 96.269 134 5 0 2711 2844 458353327 458353194 1.620000e-53 220.0
8 TraesCS7B01G259900 chr7D 96.774 62 2 0 2847 2908 458349860 458349799 1.700000e-18 104.0
9 TraesCS7B01G259900 chr7A 90.290 2585 154 34 18 2540 541897830 541900379 0.000000e+00 3293.0
10 TraesCS7B01G259900 chr7A 88.258 264 27 2 3114 3373 400759475 400759738 2.600000e-81 313.0
11 TraesCS7B01G259900 chr7A 85.561 187 20 5 2725 2906 541900375 541900559 4.560000e-44 189.0
12 TraesCS7B01G259900 chr6B 89.989 1808 118 27 789 2537 183611442 183609639 0.000000e+00 2278.0
13 TraesCS7B01G259900 chr6B 88.636 264 25 3 3114 3373 451090641 451090903 2.010000e-82 316.0
14 TraesCS7B01G259900 chr6D 90.812 1687 109 19 881 2540 99235368 99233701 0.000000e+00 2215.0
15 TraesCS7B01G259900 chr6A 88.902 1694 112 23 881 2540 119595139 119593488 0.000000e+00 2017.0
16 TraesCS7B01G259900 chr2A 88.643 722 70 6 1374 2083 137530269 137529548 0.000000e+00 869.0
17 TraesCS7B01G259900 chr2A 92.239 451 29 1 928 1378 137537786 137537342 4.880000e-178 634.0
18 TraesCS7B01G259900 chr2A 95.500 200 8 1 2910 3108 333742398 333742199 5.580000e-83 318.0
19 TraesCS7B01G259900 chr5D 90.612 245 21 2 3114 3356 545218746 545218990 1.200000e-84 324.0
20 TraesCS7B01G259900 chr5D 93.237 207 12 2 2907 3111 421982373 421982579 1.560000e-78 303.0
21 TraesCS7B01G259900 chr2D 94.686 207 9 2 2907 3111 284559963 284560169 1.550000e-83 320.0
22 TraesCS7B01G259900 chr2D 88.636 264 26 2 3114 3373 426472234 426471971 5.580000e-83 318.0
23 TraesCS7B01G259900 chr2D 93.237 207 12 2 2907 3111 643767998 643768204 1.560000e-78 303.0
24 TraesCS7B01G259900 chr3D 88.636 264 26 2 3114 3373 250455837 250455574 5.580000e-83 318.0
25 TraesCS7B01G259900 chr3D 93.237 207 12 2 2907 3111 108290849 108291055 1.560000e-78 303.0
26 TraesCS7B01G259900 chr5A 88.679 265 22 5 3114 3373 206501316 206501577 2.010000e-82 316.0
27 TraesCS7B01G259900 chr3A 88.213 263 27 2 3115 3373 304198740 304199002 9.340000e-81 311.0
28 TraesCS7B01G259900 chr1D 91.705 217 15 3 2898 3111 7431028 7431244 7.270000e-77 298.0
29 TraesCS7B01G259900 chr1D 97.059 34 1 0 2104 2137 399414125 399414092 1.340000e-04 58.4
30 TraesCS7B01G259900 chr1B 97.059 34 1 0 2104 2137 535908528 535908495 1.340000e-04 58.4
31 TraesCS7B01G259900 chr1B 100.000 29 0 0 2104 2132 535939105 535939077 2.000000e-03 54.7
32 TraesCS7B01G259900 chr1B 100.000 29 0 0 2104 2132 536121799 536121771 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G259900 chr7B 480203543 480207006 3463 True 6397.00 6397 100.0000 1 3464 1 chr7B.!!$R1 3463
1 TraesCS7B01G259900 chr7D 458349432 458355883 6451 True 1124.75 3722 94.0030 1 3464 4 chr7D.!!$R3 3463
2 TraesCS7B01G259900 chr7A 541897830 541900559 2729 False 1741.00 3293 87.9255 18 2906 2 chr7A.!!$F2 2888
3 TraesCS7B01G259900 chr6B 183609639 183611442 1803 True 2278.00 2278 89.9890 789 2537 1 chr6B.!!$R1 1748
4 TraesCS7B01G259900 chr6D 99233701 99235368 1667 True 2215.00 2215 90.8120 881 2540 1 chr6D.!!$R1 1659
5 TraesCS7B01G259900 chr6A 119593488 119595139 1651 True 2017.00 2017 88.9020 881 2540 1 chr6A.!!$R1 1659
6 TraesCS7B01G259900 chr2A 137529548 137530269 721 True 869.00 869 88.6430 1374 2083 1 chr2A.!!$R1 709

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 431 0.653636 CCCATTGCGCAAATTCATGC 59.346 50.000 28.81 0.0 42.94 4.06 F
1390 1474 1.153745 GAGTTCATGGCGTCGCTCT 60.154 57.895 18.11 1.4 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2410 2537 1.073722 CCTGCAGCTCTTCCACCAA 59.926 57.895 8.66 0.0 0.0 3.67 R
2702 2843 0.026674 CCGCACATACACGAGCAATG 59.973 55.000 0.00 0.0 0.0 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 157 3.863424 GCGTCAGTCCAAATCGAGAAATA 59.137 43.478 0.00 0.00 0.00 1.40
154 158 4.508124 GCGTCAGTCCAAATCGAGAAATAT 59.492 41.667 0.00 0.00 0.00 1.28
161 165 6.761714 AGTCCAAATCGAGAAATATGGTGTAC 59.238 38.462 0.00 0.00 0.00 2.90
203 207 0.682532 TTGGTGTGAGTTTGGCAGCA 60.683 50.000 0.00 0.00 38.60 4.41
219 223 2.210961 CAGCATGAGCAGACATCGATT 58.789 47.619 0.00 0.00 45.49 3.34
294 298 3.084039 CAGCTTTGGACAATAGAGCCAA 58.916 45.455 0.00 0.00 39.75 4.52
312 316 4.939439 AGCCAATTGAAGCATTTTGATTCC 59.061 37.500 7.12 0.00 41.68 3.01
324 328 1.939974 TTGATTCCCGCGAAGATGAG 58.060 50.000 8.23 0.00 0.00 2.90
336 340 2.789092 CGAAGATGAGCGTTCAATTGCC 60.789 50.000 5.91 0.00 36.78 4.52
345 349 2.925724 CGTTCAATTGCCTATACCCCA 58.074 47.619 0.00 0.00 0.00 4.96
354 358 9.661954 TCAATTGCCTATACCCCAAAATTATAA 57.338 29.630 0.00 0.00 0.00 0.98
375 384 7.869016 ATAATACAGTGATCCGTTTGTATCG 57.131 36.000 0.00 0.00 36.12 2.92
407 416 6.721318 ACTTTGTGTATGAATCTGTACCCAT 58.279 36.000 0.00 0.00 0.00 4.00
408 417 7.175104 ACTTTGTGTATGAATCTGTACCCATT 58.825 34.615 0.00 0.00 0.00 3.16
409 418 7.121168 ACTTTGTGTATGAATCTGTACCCATTG 59.879 37.037 0.00 0.00 0.00 2.82
422 431 0.653636 CCCATTGCGCAAATTCATGC 59.346 50.000 28.81 0.00 42.94 4.06
474 483 4.595762 AAGGTGTACGCAAAGAGAAGTA 57.404 40.909 8.97 0.00 0.00 2.24
560 569 1.847798 AACTGGCCCCATGCGAACTA 61.848 55.000 0.00 0.00 42.61 2.24
613 622 3.976942 GGTAATGAAGCATTGCTATTGCG 59.023 43.478 12.39 0.00 44.82 4.85
632 641 3.247411 TGCGATAATGAACCGTTGCTATG 59.753 43.478 0.00 0.00 0.00 2.23
639 648 1.873591 GAACCGTTGCTATGGCCATAG 59.126 52.381 38.20 38.20 42.76 2.23
654 663 2.496291 ATAGCGGACCGGTAGCACC 61.496 63.158 27.78 16.85 42.85 5.01
686 695 2.614983 ACCGTTGCTGTTACACGATTTT 59.385 40.909 0.00 0.00 0.00 1.82
687 696 3.223157 CCGTTGCTGTTACACGATTTTC 58.777 45.455 0.00 0.00 0.00 2.29
782 809 7.658179 TGACAAGATTGTGAATTCAGACTAC 57.342 36.000 8.80 1.88 42.43 2.73
783 810 7.445121 TGACAAGATTGTGAATTCAGACTACT 58.555 34.615 8.80 4.18 42.43 2.57
784 811 8.585018 TGACAAGATTGTGAATTCAGACTACTA 58.415 33.333 8.80 0.00 42.43 1.82
785 812 8.764524 ACAAGATTGTGAATTCAGACTACTAC 57.235 34.615 8.80 0.00 40.49 2.73
786 813 8.589338 ACAAGATTGTGAATTCAGACTACTACT 58.411 33.333 8.80 0.00 40.49 2.57
787 814 9.081997 CAAGATTGTGAATTCAGACTACTACTC 57.918 37.037 8.80 0.00 0.00 2.59
794 821 7.992033 GTGAATTCAGACTACTACTCCTACCTA 59.008 40.741 8.80 0.00 0.00 3.08
798 825 6.887013 TCAGACTACTACTCCTACCTAACAG 58.113 44.000 0.00 0.00 0.00 3.16
831 859 6.735130 ACCGAAACTGAACTTGGAAAAATAG 58.265 36.000 0.00 0.00 0.00 1.73
832 860 6.320418 ACCGAAACTGAACTTGGAAAAATAGT 59.680 34.615 0.00 0.00 0.00 2.12
837 865 6.795399 ACTGAACTTGGAAAAATAGTGTGTG 58.205 36.000 0.00 0.00 0.00 3.82
838 866 5.587289 TGAACTTGGAAAAATAGTGTGTGC 58.413 37.500 0.00 0.00 0.00 4.57
839 867 5.126222 TGAACTTGGAAAAATAGTGTGTGCA 59.874 36.000 0.00 0.00 0.00 4.57
840 868 5.590530 ACTTGGAAAAATAGTGTGTGCAA 57.409 34.783 0.00 0.00 0.00 4.08
841 869 6.160576 ACTTGGAAAAATAGTGTGTGCAAT 57.839 33.333 0.00 0.00 0.00 3.56
879 914 2.998670 AGAGCATTGATTCCGCATATCG 59.001 45.455 0.00 0.00 38.08 2.92
941 1022 1.556911 AGCTCAACACCTCACCATAGG 59.443 52.381 0.00 0.00 42.82 2.57
944 1025 1.555075 TCAACACCTCACCATAGGCTC 59.445 52.381 0.00 0.00 40.62 4.70
1013 1094 2.362760 TGCCATGGCCATCACCAC 60.363 61.111 33.44 4.10 44.17 4.16
1014 1095 3.149648 GCCATGGCCATCACCACC 61.150 66.667 27.24 0.00 44.17 4.61
1015 1096 2.359797 CCATGGCCATCACCACCA 59.640 61.111 17.61 0.00 44.17 4.17
1390 1474 1.153745 GAGTTCATGGCGTCGCTCT 60.154 57.895 18.11 1.40 0.00 4.09
1749 1858 2.816087 GGACTACGTATCGGCCTTCATA 59.184 50.000 0.00 0.00 0.00 2.15
2242 2351 2.428925 GCCGGGGTCAGGATAACGA 61.429 63.158 2.18 0.00 0.00 3.85
2295 2422 1.815840 GCGCAAGGTAAGGAGGCTC 60.816 63.158 5.78 5.78 38.28 4.70
2328 2455 1.812093 CGCGGACGGGCAGAAAATA 60.812 57.895 0.00 0.00 34.97 1.40
2410 2537 2.585869 CGTGTCGCGTTGCTGAAGT 61.586 57.895 5.77 0.00 35.54 3.01
2460 2596 2.166459 TGACGTCATCAAGGATCACTCC 59.834 50.000 15.76 0.00 35.39 3.85
2509 2648 0.529773 ATACGGACGCGCATGATTGT 60.530 50.000 5.73 0.00 0.00 2.71
2540 2681 1.347378 TCAGCTCCTGTGTATGTGCAA 59.653 47.619 0.00 0.00 32.61 4.08
2541 2682 2.026915 TCAGCTCCTGTGTATGTGCAAT 60.027 45.455 0.00 0.00 32.61 3.56
2542 2683 3.197549 TCAGCTCCTGTGTATGTGCAATA 59.802 43.478 0.00 0.00 32.61 1.90
2543 2684 3.940852 CAGCTCCTGTGTATGTGCAATAA 59.059 43.478 0.00 0.00 0.00 1.40
2544 2685 4.577693 CAGCTCCTGTGTATGTGCAATAAT 59.422 41.667 0.00 0.00 0.00 1.28
2545 2686 4.818546 AGCTCCTGTGTATGTGCAATAATC 59.181 41.667 0.00 0.00 0.00 1.75
2546 2687 4.023707 GCTCCTGTGTATGTGCAATAATCC 60.024 45.833 0.00 0.00 0.00 3.01
2547 2688 5.371526 CTCCTGTGTATGTGCAATAATCCT 58.628 41.667 0.00 0.00 0.00 3.24
2548 2689 6.493189 TCCTGTGTATGTGCAATAATCCTA 57.507 37.500 0.00 0.00 0.00 2.94
2549 2690 6.524734 TCCTGTGTATGTGCAATAATCCTAG 58.475 40.000 0.00 0.00 0.00 3.02
2550 2691 6.326323 TCCTGTGTATGTGCAATAATCCTAGA 59.674 38.462 0.00 0.00 0.00 2.43
2551 2692 6.425114 CCTGTGTATGTGCAATAATCCTAGAC 59.575 42.308 0.00 0.00 0.00 2.59
2552 2693 5.983118 TGTGTATGTGCAATAATCCTAGACG 59.017 40.000 0.00 0.00 0.00 4.18
2553 2694 5.983720 GTGTATGTGCAATAATCCTAGACGT 59.016 40.000 0.00 0.00 0.00 4.34
2554 2695 7.143340 GTGTATGTGCAATAATCCTAGACGTA 58.857 38.462 0.00 0.00 0.00 3.57
2555 2696 7.114529 GTGTATGTGCAATAATCCTAGACGTAC 59.885 40.741 0.00 0.00 0.00 3.67
2556 2697 5.585820 TGTGCAATAATCCTAGACGTACA 57.414 39.130 0.00 0.00 0.00 2.90
2557 2698 5.588240 TGTGCAATAATCCTAGACGTACAG 58.412 41.667 0.00 0.00 0.00 2.74
2558 2699 4.982916 GTGCAATAATCCTAGACGTACAGG 59.017 45.833 8.35 8.35 0.00 4.00
2559 2700 4.647853 TGCAATAATCCTAGACGTACAGGT 59.352 41.667 13.19 0.37 33.37 4.00
2560 2701 5.128171 TGCAATAATCCTAGACGTACAGGTT 59.872 40.000 13.19 9.91 33.37 3.50
2561 2702 5.690857 GCAATAATCCTAGACGTACAGGTTC 59.309 44.000 13.19 0.00 33.37 3.62
2562 2703 5.686159 ATAATCCTAGACGTACAGGTTCG 57.314 43.478 13.19 0.00 33.37 3.95
2563 2704 1.742761 TCCTAGACGTACAGGTTCGG 58.257 55.000 13.19 0.00 33.37 4.30
2564 2705 0.100146 CCTAGACGTACAGGTTCGGC 59.900 60.000 6.74 0.00 35.08 5.54
2565 2706 0.806868 CTAGACGTACAGGTTCGGCA 59.193 55.000 7.05 0.00 37.57 5.69
2566 2707 1.404391 CTAGACGTACAGGTTCGGCAT 59.596 52.381 7.05 0.00 37.57 4.40
2567 2708 0.606604 AGACGTACAGGTTCGGCATT 59.393 50.000 7.05 0.00 37.57 3.56
2568 2709 1.001633 AGACGTACAGGTTCGGCATTT 59.998 47.619 7.05 0.00 37.57 2.32
2569 2710 2.231964 AGACGTACAGGTTCGGCATTTA 59.768 45.455 7.05 0.00 37.57 1.40
2570 2711 2.340337 ACGTACAGGTTCGGCATTTAC 58.660 47.619 3.62 0.00 0.00 2.01
2571 2712 1.322338 CGTACAGGTTCGGCATTTACG 59.678 52.381 0.00 0.00 0.00 3.18
2572 2713 1.662122 GTACAGGTTCGGCATTTACGG 59.338 52.381 0.00 0.00 0.00 4.02
2573 2714 0.675522 ACAGGTTCGGCATTTACGGG 60.676 55.000 0.00 0.00 0.00 5.28
2574 2715 1.078001 AGGTTCGGCATTTACGGGG 60.078 57.895 0.00 0.00 0.00 5.73
2575 2716 2.767445 GGTTCGGCATTTACGGGGC 61.767 63.158 0.00 0.00 0.00 5.80
2576 2717 2.438795 TTCGGCATTTACGGGGCC 60.439 61.111 0.00 0.00 44.27 5.80
2577 2718 2.974041 TTCGGCATTTACGGGGCCT 61.974 57.895 0.84 0.00 45.53 5.19
2578 2719 2.879813 TTCGGCATTTACGGGGCCTC 62.880 60.000 0.84 0.00 45.53 4.70
2579 2720 2.595655 GGCATTTACGGGGCCTCT 59.404 61.111 0.00 0.00 44.32 3.69
2580 2721 1.076995 GGCATTTACGGGGCCTCTT 60.077 57.895 0.00 0.00 44.32 2.85
2581 2722 0.181824 GGCATTTACGGGGCCTCTTA 59.818 55.000 0.00 0.00 44.32 2.10
2582 2723 1.409101 GGCATTTACGGGGCCTCTTAA 60.409 52.381 0.00 0.00 44.32 1.85
2583 2724 2.371306 GCATTTACGGGGCCTCTTAAA 58.629 47.619 16.03 16.03 0.00 1.52
2584 2725 2.956333 GCATTTACGGGGCCTCTTAAAT 59.044 45.455 18.91 18.91 0.00 1.40
2585 2726 3.004419 GCATTTACGGGGCCTCTTAAATC 59.996 47.826 21.17 13.57 0.00 2.17
2586 2727 4.461198 CATTTACGGGGCCTCTTAAATCT 58.539 43.478 21.17 3.32 0.00 2.40
2587 2728 3.832615 TTACGGGGCCTCTTAAATCTC 57.167 47.619 0.00 0.00 0.00 2.75
2588 2729 1.880941 ACGGGGCCTCTTAAATCTCT 58.119 50.000 0.00 0.00 0.00 3.10
2589 2730 2.197465 ACGGGGCCTCTTAAATCTCTT 58.803 47.619 0.00 0.00 0.00 2.85
2590 2731 2.170817 ACGGGGCCTCTTAAATCTCTTC 59.829 50.000 0.00 0.00 0.00 2.87
2591 2732 2.803492 CGGGGCCTCTTAAATCTCTTCG 60.803 54.545 0.00 0.00 0.00 3.79
2592 2733 2.485657 GGGGCCTCTTAAATCTCTTCGG 60.486 54.545 0.84 0.00 0.00 4.30
2593 2734 2.214347 GGCCTCTTAAATCTCTTCGGC 58.786 52.381 0.00 0.00 35.63 5.54
2594 2735 2.214347 GCCTCTTAAATCTCTTCGGCC 58.786 52.381 0.00 0.00 0.00 6.13
2595 2736 2.839975 CCTCTTAAATCTCTTCGGCCC 58.160 52.381 0.00 0.00 0.00 5.80
2596 2737 2.485657 CCTCTTAAATCTCTTCGGCCCC 60.486 54.545 0.00 0.00 0.00 5.80
2597 2738 1.489230 TCTTAAATCTCTTCGGCCCCC 59.511 52.381 0.00 0.00 0.00 5.40
2613 2754 0.769247 CCCCCTTATTTCTACCCGGG 59.231 60.000 22.25 22.25 0.00 5.73
2614 2755 0.769247 CCCCTTATTTCTACCCGGGG 59.231 60.000 27.92 12.73 44.79 5.73
2615 2756 1.514983 CCCTTATTTCTACCCGGGGT 58.485 55.000 27.92 24.58 40.16 4.95
2616 2757 1.142262 CCCTTATTTCTACCCGGGGTG 59.858 57.143 29.08 17.24 36.19 4.61
2617 2758 2.121129 CCTTATTTCTACCCGGGGTGA 58.879 52.381 29.08 19.48 36.19 4.02
2618 2759 2.709397 CCTTATTTCTACCCGGGGTGAT 59.291 50.000 29.08 17.71 36.19 3.06
2619 2760 3.244457 CCTTATTTCTACCCGGGGTGATC 60.244 52.174 29.08 0.00 36.19 2.92
2620 2761 1.137697 ATTTCTACCCGGGGTGATCC 58.862 55.000 29.08 0.00 36.19 3.36
2629 2770 3.083997 GGGTGATCCCGCCTCACT 61.084 66.667 9.23 0.00 44.74 3.41
2630 2771 2.501610 GGTGATCCCGCCTCACTC 59.498 66.667 9.23 0.00 42.14 3.51
2631 2772 2.060980 GGTGATCCCGCCTCACTCT 61.061 63.158 9.23 0.00 42.14 3.24
2632 2773 1.439644 GTGATCCCGCCTCACTCTC 59.560 63.158 0.00 0.00 39.90 3.20
2633 2774 1.758514 TGATCCCGCCTCACTCTCC 60.759 63.158 0.00 0.00 0.00 3.71
2634 2775 1.456705 GATCCCGCCTCACTCTCCT 60.457 63.158 0.00 0.00 0.00 3.69
2635 2776 1.002274 ATCCCGCCTCACTCTCCTT 59.998 57.895 0.00 0.00 0.00 3.36
2636 2777 1.045911 ATCCCGCCTCACTCTCCTTC 61.046 60.000 0.00 0.00 0.00 3.46
2637 2778 1.684049 CCCGCCTCACTCTCCTTCT 60.684 63.158 0.00 0.00 0.00 2.85
2638 2779 0.395862 CCCGCCTCACTCTCCTTCTA 60.396 60.000 0.00 0.00 0.00 2.10
2639 2780 1.698506 CCGCCTCACTCTCCTTCTAT 58.301 55.000 0.00 0.00 0.00 1.98
2640 2781 2.035632 CCGCCTCACTCTCCTTCTATT 58.964 52.381 0.00 0.00 0.00 1.73
2641 2782 2.035321 CCGCCTCACTCTCCTTCTATTC 59.965 54.545 0.00 0.00 0.00 1.75
2642 2783 2.690497 CGCCTCACTCTCCTTCTATTCA 59.310 50.000 0.00 0.00 0.00 2.57
2643 2784 3.131223 CGCCTCACTCTCCTTCTATTCAA 59.869 47.826 0.00 0.00 0.00 2.69
2644 2785 4.202202 CGCCTCACTCTCCTTCTATTCAAT 60.202 45.833 0.00 0.00 0.00 2.57
2645 2786 5.679601 GCCTCACTCTCCTTCTATTCAATT 58.320 41.667 0.00 0.00 0.00 2.32
2646 2787 5.757808 GCCTCACTCTCCTTCTATTCAATTC 59.242 44.000 0.00 0.00 0.00 2.17
2647 2788 6.407979 GCCTCACTCTCCTTCTATTCAATTCT 60.408 42.308 0.00 0.00 0.00 2.40
2648 2789 6.985645 CCTCACTCTCCTTCTATTCAATTCTG 59.014 42.308 0.00 0.00 0.00 3.02
2649 2790 7.364585 CCTCACTCTCCTTCTATTCAATTCTGT 60.365 40.741 0.00 0.00 0.00 3.41
2650 2791 7.911651 TCACTCTCCTTCTATTCAATTCTGTT 58.088 34.615 0.00 0.00 0.00 3.16
2651 2792 9.035890 TCACTCTCCTTCTATTCAATTCTGTTA 57.964 33.333 0.00 0.00 0.00 2.41
2652 2793 9.658799 CACTCTCCTTCTATTCAATTCTGTTAA 57.341 33.333 0.00 0.00 0.00 2.01
2653 2794 9.883142 ACTCTCCTTCTATTCAATTCTGTTAAG 57.117 33.333 0.00 0.00 0.00 1.85
2654 2795 8.723942 TCTCCTTCTATTCAATTCTGTTAAGC 57.276 34.615 0.00 0.00 0.00 3.09
2655 2796 7.770897 TCTCCTTCTATTCAATTCTGTTAAGCC 59.229 37.037 0.00 0.00 0.00 4.35
2656 2797 7.402054 TCCTTCTATTCAATTCTGTTAAGCCA 58.598 34.615 0.00 0.00 0.00 4.75
2657 2798 7.888021 TCCTTCTATTCAATTCTGTTAAGCCAA 59.112 33.333 0.00 0.00 0.00 4.52
2658 2799 8.522830 CCTTCTATTCAATTCTGTTAAGCCAAA 58.477 33.333 0.00 0.00 0.00 3.28
2661 2802 9.241919 TCTATTCAATTCTGTTAAGCCAAATCA 57.758 29.630 0.00 0.00 0.00 2.57
2662 2803 9.512435 CTATTCAATTCTGTTAAGCCAAATCAG 57.488 33.333 0.00 0.00 0.00 2.90
2663 2804 5.713025 TCAATTCTGTTAAGCCAAATCAGC 58.287 37.500 0.00 0.00 0.00 4.26
2664 2805 4.725790 ATTCTGTTAAGCCAAATCAGCC 57.274 40.909 0.00 0.00 0.00 4.85
2665 2806 2.083774 TCTGTTAAGCCAAATCAGCCG 58.916 47.619 0.00 0.00 0.00 5.52
2666 2807 1.812571 CTGTTAAGCCAAATCAGCCGT 59.187 47.619 0.00 0.00 0.00 5.68
2667 2808 3.006940 CTGTTAAGCCAAATCAGCCGTA 58.993 45.455 0.00 0.00 0.00 4.02
2668 2809 3.413327 TGTTAAGCCAAATCAGCCGTAA 58.587 40.909 0.00 0.00 0.00 3.18
2669 2810 4.013728 TGTTAAGCCAAATCAGCCGTAAT 58.986 39.130 0.00 0.00 0.00 1.89
2670 2811 4.461081 TGTTAAGCCAAATCAGCCGTAATT 59.539 37.500 0.00 0.00 0.00 1.40
2671 2812 5.648526 TGTTAAGCCAAATCAGCCGTAATTA 59.351 36.000 0.00 0.00 0.00 1.40
2672 2813 6.151312 TGTTAAGCCAAATCAGCCGTAATTAA 59.849 34.615 0.00 0.00 0.00 1.40
2673 2814 5.852282 AAGCCAAATCAGCCGTAATTAAT 57.148 34.783 0.00 0.00 0.00 1.40
2674 2815 5.438761 AGCCAAATCAGCCGTAATTAATC 57.561 39.130 0.00 0.00 0.00 1.75
2675 2816 5.133221 AGCCAAATCAGCCGTAATTAATCT 58.867 37.500 0.00 0.00 0.00 2.40
2676 2817 5.239525 AGCCAAATCAGCCGTAATTAATCTC 59.760 40.000 0.00 0.00 0.00 2.75
2677 2818 5.239525 GCCAAATCAGCCGTAATTAATCTCT 59.760 40.000 0.00 0.00 0.00 3.10
2678 2819 6.662616 CCAAATCAGCCGTAATTAATCTCTG 58.337 40.000 0.00 0.00 0.00 3.35
2679 2820 5.931441 AATCAGCCGTAATTAATCTCTGC 57.069 39.130 0.00 0.00 0.00 4.26
2680 2821 4.672587 TCAGCCGTAATTAATCTCTGCT 57.327 40.909 0.00 0.00 0.00 4.24
2681 2822 4.621991 TCAGCCGTAATTAATCTCTGCTC 58.378 43.478 6.03 0.00 0.00 4.26
2682 2823 3.426859 CAGCCGTAATTAATCTCTGCTCG 59.573 47.826 6.03 0.00 0.00 5.03
2683 2824 3.068307 AGCCGTAATTAATCTCTGCTCGT 59.932 43.478 0.00 0.00 0.00 4.18
2684 2825 4.277672 AGCCGTAATTAATCTCTGCTCGTA 59.722 41.667 0.00 0.00 0.00 3.43
2685 2826 4.980434 GCCGTAATTAATCTCTGCTCGTAA 59.020 41.667 0.00 0.00 0.00 3.18
2686 2827 5.634020 GCCGTAATTAATCTCTGCTCGTAAT 59.366 40.000 0.00 0.00 0.00 1.89
2687 2828 6.145696 GCCGTAATTAATCTCTGCTCGTAATT 59.854 38.462 0.00 0.00 0.00 1.40
2688 2829 7.327761 GCCGTAATTAATCTCTGCTCGTAATTA 59.672 37.037 0.00 0.00 0.00 1.40
2689 2830 8.636843 CCGTAATTAATCTCTGCTCGTAATTAC 58.363 37.037 5.47 5.47 40.72 1.89
2690 2831 8.636843 CGTAATTAATCTCTGCTCGTAATTACC 58.363 37.037 10.01 0.00 40.88 2.85
2691 2832 7.964604 AATTAATCTCTGCTCGTAATTACCC 57.035 36.000 10.01 0.04 0.00 3.69
2692 2833 3.644884 ATCTCTGCTCGTAATTACCCG 57.355 47.619 10.01 0.00 0.00 5.28
2693 2834 2.372264 TCTCTGCTCGTAATTACCCGT 58.628 47.619 10.01 0.00 0.00 5.28
2694 2835 3.544684 TCTCTGCTCGTAATTACCCGTA 58.455 45.455 10.01 0.51 0.00 4.02
2695 2836 4.139786 TCTCTGCTCGTAATTACCCGTAT 58.860 43.478 10.01 0.00 0.00 3.06
2696 2837 4.023450 TCTCTGCTCGTAATTACCCGTATG 60.023 45.833 10.01 0.00 0.00 2.39
2697 2838 3.633525 TCTGCTCGTAATTACCCGTATGT 59.366 43.478 10.01 0.00 0.00 2.29
2698 2839 3.708890 TGCTCGTAATTACCCGTATGTG 58.291 45.455 10.01 0.00 0.00 3.21
2699 2840 3.130869 TGCTCGTAATTACCCGTATGTGT 59.869 43.478 10.01 0.00 0.00 3.72
2700 2841 4.337836 TGCTCGTAATTACCCGTATGTGTA 59.662 41.667 10.01 0.00 0.00 2.90
2701 2842 4.913924 GCTCGTAATTACCCGTATGTGTAG 59.086 45.833 10.01 0.00 0.00 2.74
2702 2843 4.858935 TCGTAATTACCCGTATGTGTAGC 58.141 43.478 10.01 0.00 0.00 3.58
2703 2844 4.337836 TCGTAATTACCCGTATGTGTAGCA 59.662 41.667 10.01 0.00 0.00 3.49
2704 2845 5.009911 TCGTAATTACCCGTATGTGTAGCAT 59.990 40.000 10.01 0.00 41.42 3.79
2705 2846 5.693104 CGTAATTACCCGTATGTGTAGCATT 59.307 40.000 10.01 0.00 38.94 3.56
2706 2847 6.346279 CGTAATTACCCGTATGTGTAGCATTG 60.346 42.308 10.01 0.00 38.94 2.82
2707 2848 1.663695 ACCCGTATGTGTAGCATTGC 58.336 50.000 0.00 0.00 38.94 3.56
2708 2849 1.209504 ACCCGTATGTGTAGCATTGCT 59.790 47.619 16.63 16.63 43.41 3.91
2709 2850 1.867233 CCCGTATGTGTAGCATTGCTC 59.133 52.381 15.81 7.72 40.44 4.26
2710 2851 1.522676 CCGTATGTGTAGCATTGCTCG 59.477 52.381 15.81 10.35 40.44 5.03
2711 2852 2.193447 CGTATGTGTAGCATTGCTCGT 58.807 47.619 15.81 5.13 40.44 4.18
2712 2853 2.034591 CGTATGTGTAGCATTGCTCGTG 60.035 50.000 15.81 0.00 40.44 4.35
2713 2854 2.099141 ATGTGTAGCATTGCTCGTGT 57.901 45.000 15.81 0.00 40.44 4.49
2714 2855 2.734276 TGTGTAGCATTGCTCGTGTA 57.266 45.000 15.81 0.00 40.44 2.90
2715 2856 3.245518 TGTGTAGCATTGCTCGTGTAT 57.754 42.857 15.81 0.00 40.44 2.29
2716 2857 2.929398 TGTGTAGCATTGCTCGTGTATG 59.071 45.455 15.81 0.00 40.44 2.39
2717 2858 2.930040 GTGTAGCATTGCTCGTGTATGT 59.070 45.455 15.81 0.00 40.44 2.29
2718 2859 2.929398 TGTAGCATTGCTCGTGTATGTG 59.071 45.455 15.81 0.00 40.44 3.21
2719 2860 0.729116 AGCATTGCTCGTGTATGTGC 59.271 50.000 5.03 5.68 30.62 4.57
2728 2869 1.154488 GTGTATGTGCGGTTGTGCG 60.154 57.895 0.00 0.00 37.81 5.34
2785 2926 3.463944 CCGCGTACTCCTCCATTAATTT 58.536 45.455 4.92 0.00 0.00 1.82
2800 2941 5.123186 CCATTAATTTTGTAGCCTCGTGACA 59.877 40.000 0.00 0.00 0.00 3.58
2828 2969 1.093159 CCTCAAGCTGCCTGACATTC 58.907 55.000 0.00 0.00 0.00 2.67
2928 6404 9.591792 AGTACTTCGTTTTAGTTTACAAGTCTT 57.408 29.630 0.00 0.00 0.00 3.01
2929 6405 9.628983 GTACTTCGTTTTAGTTTACAAGTCTTG 57.371 33.333 11.17 11.17 0.00 3.02
2930 6406 7.184779 ACTTCGTTTTAGTTTACAAGTCTTGC 58.815 34.615 12.66 0.00 0.00 4.01
2931 6407 5.730269 TCGTTTTAGTTTACAAGTCTTGCG 58.270 37.500 12.66 4.32 0.00 4.85
2932 6408 4.374828 CGTTTTAGTTTACAAGTCTTGCGC 59.625 41.667 12.66 0.00 0.00 6.09
2933 6409 5.267776 GTTTTAGTTTACAAGTCTTGCGCA 58.732 37.500 5.66 5.66 0.00 6.09
2934 6410 5.682943 TTTAGTTTACAAGTCTTGCGCAT 57.317 34.783 12.75 0.00 0.00 4.73
2935 6411 6.788684 TTTAGTTTACAAGTCTTGCGCATA 57.211 33.333 12.75 0.00 0.00 3.14
2936 6412 6.978343 TTAGTTTACAAGTCTTGCGCATAT 57.022 33.333 12.75 0.00 0.00 1.78
2937 6413 8.481974 TTTAGTTTACAAGTCTTGCGCATATA 57.518 30.769 12.75 0.00 0.00 0.86
2938 6414 6.345920 AGTTTACAAGTCTTGCGCATATAC 57.654 37.500 12.75 10.19 0.00 1.47
2939 6415 5.293569 AGTTTACAAGTCTTGCGCATATACC 59.706 40.000 12.75 0.00 0.00 2.73
2940 6416 3.543680 ACAAGTCTTGCGCATATACCT 57.456 42.857 12.75 0.00 0.00 3.08
2941 6417 4.665833 ACAAGTCTTGCGCATATACCTA 57.334 40.909 12.75 0.00 0.00 3.08
2942 6418 4.621991 ACAAGTCTTGCGCATATACCTAG 58.378 43.478 12.75 3.25 0.00 3.02
2943 6419 3.944055 AGTCTTGCGCATATACCTAGG 57.056 47.619 12.75 7.41 0.00 3.02
2944 6420 3.231818 AGTCTTGCGCATATACCTAGGT 58.768 45.455 20.57 20.57 0.00 3.08
2945 6421 3.641906 AGTCTTGCGCATATACCTAGGTT 59.358 43.478 22.11 10.62 0.00 3.50
2946 6422 3.741344 GTCTTGCGCATATACCTAGGTTG 59.259 47.826 22.11 13.87 0.00 3.77
2947 6423 3.386726 TCTTGCGCATATACCTAGGTTGT 59.613 43.478 22.11 12.13 0.00 3.32
2948 6424 3.380479 TGCGCATATACCTAGGTTGTC 57.620 47.619 22.11 9.23 0.00 3.18
2949 6425 2.696187 TGCGCATATACCTAGGTTGTCA 59.304 45.455 22.11 11.58 0.00 3.58
2950 6426 3.133183 TGCGCATATACCTAGGTTGTCAA 59.867 43.478 22.11 0.75 0.00 3.18
2951 6427 4.202315 TGCGCATATACCTAGGTTGTCAAT 60.202 41.667 22.11 9.64 0.00 2.57
2952 6428 4.755123 GCGCATATACCTAGGTTGTCAATT 59.245 41.667 22.11 0.00 0.00 2.32
2953 6429 5.238650 GCGCATATACCTAGGTTGTCAATTT 59.761 40.000 22.11 0.00 0.00 1.82
2954 6430 6.238648 GCGCATATACCTAGGTTGTCAATTTT 60.239 38.462 22.11 0.00 0.00 1.82
2955 6431 7.041644 GCGCATATACCTAGGTTGTCAATTTTA 60.042 37.037 22.11 0.00 0.00 1.52
2956 6432 8.999431 CGCATATACCTAGGTTGTCAATTTTAT 58.001 33.333 22.11 5.71 0.00 1.40
2960 6436 8.747538 ATACCTAGGTTGTCAATTTTATCACC 57.252 34.615 22.11 0.00 0.00 4.02
2961 6437 5.949952 ACCTAGGTTGTCAATTTTATCACCC 59.050 40.000 9.21 0.00 0.00 4.61
2962 6438 6.187682 CCTAGGTTGTCAATTTTATCACCCT 58.812 40.000 0.00 0.00 0.00 4.34
2963 6439 7.037153 ACCTAGGTTGTCAATTTTATCACCCTA 60.037 37.037 9.21 0.00 0.00 3.53
2964 6440 7.832187 CCTAGGTTGTCAATTTTATCACCCTAA 59.168 37.037 0.00 0.00 27.80 2.69
2965 6441 9.408648 CTAGGTTGTCAATTTTATCACCCTAAT 57.591 33.333 0.00 0.00 27.80 1.73
2967 6443 9.936329 AGGTTGTCAATTTTATCACCCTAATAT 57.064 29.630 0.00 0.00 0.00 1.28
3017 6493 8.378172 TCGTTTCAAAATAGAACATCTGAAGT 57.622 30.769 0.00 0.00 0.00 3.01
3018 6494 8.836413 TCGTTTCAAAATAGAACATCTGAAGTT 58.164 29.630 0.00 0.00 0.00 2.66
3019 6495 9.450807 CGTTTCAAAATAGAACATCTGAAGTTT 57.549 29.630 0.00 0.00 0.00 2.66
3071 6547 9.575868 TGACTTGTATTAGGTTGGTTAAATTGA 57.424 29.630 0.00 0.00 0.00 2.57
3072 6548 9.836076 GACTTGTATTAGGTTGGTTAAATTGAC 57.164 33.333 0.00 0.00 0.00 3.18
3073 6549 8.508875 ACTTGTATTAGGTTGGTTAAATTGACG 58.491 33.333 0.00 0.00 0.00 4.35
3074 6550 8.618702 TTGTATTAGGTTGGTTAAATTGACGA 57.381 30.769 0.00 0.00 0.00 4.20
3075 6551 8.031848 TGTATTAGGTTGGTTAAATTGACGAC 57.968 34.615 0.00 0.00 0.00 4.34
3076 6552 5.945466 TTAGGTTGGTTAAATTGACGACC 57.055 39.130 0.00 4.64 0.00 4.79
3077 6553 4.094830 AGGTTGGTTAAATTGACGACCT 57.905 40.909 8.18 8.18 32.66 3.85
3078 6554 5.231702 AGGTTGGTTAAATTGACGACCTA 57.768 39.130 11.08 0.91 34.50 3.08
3079 6555 5.243207 AGGTTGGTTAAATTGACGACCTAG 58.757 41.667 11.08 0.00 34.50 3.02
3080 6556 4.393990 GGTTGGTTAAATTGACGACCTAGG 59.606 45.833 7.41 7.41 33.33 3.02
3081 6557 4.210724 TGGTTAAATTGACGACCTAGGG 57.789 45.455 14.81 0.00 33.33 3.53
3082 6558 3.054948 TGGTTAAATTGACGACCTAGGGG 60.055 47.826 14.81 7.16 38.88 4.79
3091 6567 3.306379 ACCTAGGGGTAAGCGCAC 58.694 61.111 14.81 0.00 45.32 5.34
3092 6568 2.106332 CCTAGGGGTAAGCGCACG 59.894 66.667 11.47 0.00 0.00 5.34
3093 6569 2.585247 CTAGGGGTAAGCGCACGC 60.585 66.667 11.47 6.99 42.33 5.34
3099 6575 2.125832 GTAAGCGCACGCCCTGTA 60.126 61.111 11.47 0.00 43.17 2.74
3100 6576 1.738830 GTAAGCGCACGCCCTGTAA 60.739 57.895 11.47 0.00 43.17 2.41
3101 6577 1.004799 TAAGCGCACGCCCTGTAAA 60.005 52.632 11.47 0.00 43.17 2.01
3102 6578 1.293267 TAAGCGCACGCCCTGTAAAC 61.293 55.000 11.47 0.00 43.17 2.01
3103 6579 3.047877 GCGCACGCCCTGTAAACT 61.048 61.111 0.30 0.00 34.56 2.66
3104 6580 2.860293 CGCACGCCCTGTAAACTG 59.140 61.111 0.00 0.00 0.00 3.16
3105 6581 2.677003 CGCACGCCCTGTAAACTGG 61.677 63.158 0.00 0.00 35.06 4.00
3106 6582 1.302192 GCACGCCCTGTAAACTGGA 60.302 57.895 7.54 0.00 37.15 3.86
3107 6583 1.298859 GCACGCCCTGTAAACTGGAG 61.299 60.000 7.54 4.32 37.15 3.86
3108 6584 0.673644 CACGCCCTGTAAACTGGAGG 60.674 60.000 7.54 2.15 37.15 4.30
3109 6585 0.834687 ACGCCCTGTAAACTGGAGGA 60.835 55.000 7.54 0.00 37.15 3.71
3110 6586 0.108138 CGCCCTGTAAACTGGAGGAG 60.108 60.000 7.54 0.00 37.15 3.69
3111 6587 1.276622 GCCCTGTAAACTGGAGGAGA 58.723 55.000 7.54 0.00 37.15 3.71
3112 6588 1.066071 GCCCTGTAAACTGGAGGAGAC 60.066 57.143 7.54 0.00 37.15 3.36
3119 6595 3.562108 AAACTGGAGGAGACCTTAGGA 57.438 47.619 4.77 0.00 31.76 2.94
3137 6613 1.577328 GATGTGCACCGTGACCAAGG 61.577 60.000 15.69 0.44 35.99 3.61
3140 6616 1.302431 TGCACCGTGACCAAGGATG 60.302 57.895 8.91 5.00 33.97 3.51
3144 6620 1.221840 CCGTGACCAAGGATGAGGG 59.778 63.158 0.00 0.00 31.21 4.30
3145 6621 1.264749 CCGTGACCAAGGATGAGGGA 61.265 60.000 0.00 0.00 31.21 4.20
3152 6628 2.107552 ACCAAGGATGAGGGAAAAACGA 59.892 45.455 0.00 0.00 0.00 3.85
3155 6631 4.072131 CAAGGATGAGGGAAAAACGAGAA 58.928 43.478 0.00 0.00 0.00 2.87
3158 6634 4.519350 AGGATGAGGGAAAAACGAGAAAAC 59.481 41.667 0.00 0.00 0.00 2.43
3164 6640 8.680039 TGAGGGAAAAACGAGAAAACTTAATA 57.320 30.769 0.00 0.00 0.00 0.98
3212 6688 2.293122 TGCAATGAACTAACCACTGCAC 59.707 45.455 0.00 0.00 33.65 4.57
3248 6724 5.584442 TGATATGTCATTGAAAGCATGCAC 58.416 37.500 21.98 11.31 0.00 4.57
3250 6726 0.986992 GTCATTGAAAGCATGCACGC 59.013 50.000 21.98 0.00 0.00 5.34
3255 6731 3.631487 GAAAGCATGCACGCCCCAC 62.631 63.158 21.98 0.00 0.00 4.61
3292 6768 8.134895 GGTTGATATGTCAAGAAACAAGAAACA 58.865 33.333 4.98 0.00 44.58 2.83
3313 6789 1.726853 AGTGAGAGTTAATGCACCGC 58.273 50.000 0.00 0.00 31.85 5.68
3314 6790 0.370273 GTGAGAGTTAATGCACCGCG 59.630 55.000 0.00 0.00 0.00 6.46
3316 6792 1.079127 AGAGTTAATGCACCGCGCT 60.079 52.632 5.56 0.00 43.06 5.92
3328 6804 0.309612 ACCGCGCTTAAGTGTTTTGG 59.690 50.000 17.00 14.98 0.00 3.28
3404 6880 1.066573 GTGCATGTAGCTGTGAGGTCT 60.067 52.381 0.00 0.00 45.94 3.85
3427 6903 3.763097 TGATTTATCTTGTTGCGGCAG 57.237 42.857 1.67 0.00 0.00 4.85
3444 6925 1.369625 CAGGCAATACAACCTCCGTC 58.630 55.000 0.00 0.00 32.56 4.79
3458 6939 4.514401 ACCTCCGTCTGGAATTAATTGTC 58.486 43.478 5.17 0.00 45.87 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 8.974060 ACTATTTCTCCTTGTGTTTAAACTCA 57.026 30.769 18.72 17.77 0.00 3.41
15 16 8.617809 GTGTGACTATTTCTCCTTGTGTTTAAA 58.382 33.333 0.00 0.00 0.00 1.52
153 157 4.637483 GCATATGTTTGCAGTACACCAT 57.363 40.909 4.29 1.39 42.31 3.55
179 183 2.361757 TGCCAAACTCACACCAATTCTG 59.638 45.455 0.00 0.00 0.00 3.02
203 207 3.324268 AGGATGAATCGATGTCTGCTCAT 59.676 43.478 7.55 7.55 0.00 2.90
294 298 3.524541 GCGGGAATCAAAATGCTTCAAT 58.475 40.909 0.00 0.00 0.00 2.57
324 328 1.607148 GGGGTATAGGCAATTGAACGC 59.393 52.381 10.34 6.71 0.00 4.84
354 358 5.258456 ACGATACAAACGGATCACTGTAT 57.742 39.130 0.00 1.79 37.62 2.29
362 366 6.308371 AGTTGAAAAACGATACAAACGGAT 57.692 33.333 0.00 0.00 34.93 4.18
375 384 9.301153 ACAGATTCATACACAAAGTTGAAAAAC 57.699 29.630 0.00 0.00 33.86 2.43
407 416 2.414806 ACAATGCATGAATTTGCGCAA 58.585 38.095 21.02 21.02 45.77 4.85
408 417 2.081725 ACAATGCATGAATTTGCGCA 57.918 40.000 5.66 5.66 45.77 6.09
409 418 2.536803 CCTACAATGCATGAATTTGCGC 59.463 45.455 0.00 0.00 45.77 6.09
474 483 3.682696 AGTGTGCATGATGAGACAATGT 58.317 40.909 0.00 0.00 0.00 2.71
560 569 8.396272 ACTAGTGTTGCAATAGAGTCAATTTT 57.604 30.769 11.59 0.00 35.86 1.82
613 622 3.058224 GGCCATAGCAACGGTTCATTATC 60.058 47.826 0.00 0.00 42.56 1.75
632 641 3.222354 CTACCGGTCCGCTATGGCC 62.222 68.421 12.40 0.00 37.80 5.36
642 651 4.468689 GCCAGGGTGCTACCGGTC 62.469 72.222 12.40 0.00 39.83 4.79
654 663 0.392998 AGCAACGGTTCATAGCCAGG 60.393 55.000 0.00 0.00 0.00 4.45
660 669 2.732500 CGTGTAACAGCAACGGTTCATA 59.267 45.455 0.00 0.00 35.74 2.15
686 695 7.653713 GTCTATCCAGCTATCTCAAATTTTCGA 59.346 37.037 0.00 0.00 0.00 3.71
687 696 7.439356 TGTCTATCCAGCTATCTCAAATTTTCG 59.561 37.037 0.00 0.00 0.00 3.46
794 821 4.039488 TCAGTTTCGGTACATACACCTGTT 59.961 41.667 0.00 0.00 36.35 3.16
798 825 4.563061 AGTTCAGTTTCGGTACATACACC 58.437 43.478 0.00 0.00 35.04 4.16
806 833 6.702716 ATTTTTCCAAGTTCAGTTTCGGTA 57.297 33.333 0.00 0.00 0.00 4.02
831 859 6.226052 TGGAGATGATATCTATTGCACACAC 58.774 40.000 3.98 0.00 40.38 3.82
832 860 6.268387 TCTGGAGATGATATCTATTGCACACA 59.732 38.462 3.98 0.00 40.38 3.72
837 865 6.757947 GCTCTTCTGGAGATGATATCTATTGC 59.242 42.308 3.98 0.00 44.45 3.56
838 866 7.838884 TGCTCTTCTGGAGATGATATCTATTG 58.161 38.462 3.98 0.00 44.45 1.90
839 867 8.612486 ATGCTCTTCTGGAGATGATATCTATT 57.388 34.615 3.98 0.00 44.45 1.73
840 868 8.479689 CAATGCTCTTCTGGAGATGATATCTAT 58.520 37.037 3.98 0.00 44.45 1.98
841 869 7.673082 TCAATGCTCTTCTGGAGATGATATCTA 59.327 37.037 3.98 0.00 44.45 1.98
851 886 2.871022 CGGAATCAATGCTCTTCTGGAG 59.129 50.000 0.00 0.00 44.49 3.86
879 914 1.807742 CTCGGATCGTCTGTATCCCTC 59.192 57.143 0.00 0.00 39.92 4.30
941 1022 0.606673 GACTTGTGAAGGGTGGGAGC 60.607 60.000 0.00 0.00 0.00 4.70
944 1025 0.764890 TCTGACTTGTGAAGGGTGGG 59.235 55.000 0.00 0.00 0.00 4.61
1098 1182 2.354729 CCCTTGGCCATGAACGGA 59.645 61.111 19.85 0.00 0.00 4.69
1398 1482 2.627737 GGAGACGAGCACGAGTGGT 61.628 63.158 11.40 7.72 44.89 4.16
1626 1735 4.988716 ACTGGGTCCTCGGCGTCA 62.989 66.667 6.85 0.00 0.00 4.35
1749 1858 1.814527 GTCCGGCTGGTAGAACGAT 59.185 57.895 12.43 0.00 36.30 3.73
2096 2205 1.669115 CAGTGGCTCACGAACCCTG 60.669 63.158 0.00 0.00 39.64 4.45
2358 2485 2.375766 GCTCACCGCTGACTTCACG 61.376 63.158 0.00 0.00 35.14 4.35
2360 2487 2.049156 CGCTCACCGCTGACTTCA 60.049 61.111 0.00 0.00 36.13 3.02
2410 2537 1.073722 CCTGCAGCTCTTCCACCAA 59.926 57.895 8.66 0.00 0.00 3.67
2460 2596 1.197721 GCGGCCGATGGATTTGATTAG 59.802 52.381 33.48 0.00 0.00 1.73
2509 2648 4.202461 ACACAGGAGCTGAAGTTATTTCCA 60.202 41.667 0.00 0.00 34.77 3.53
2540 2681 4.518211 CCGAACCTGTACGTCTAGGATTAT 59.482 45.833 21.07 7.30 37.52 1.28
2541 2682 3.879295 CCGAACCTGTACGTCTAGGATTA 59.121 47.826 21.07 0.00 37.52 1.75
2542 2683 2.686915 CCGAACCTGTACGTCTAGGATT 59.313 50.000 21.07 12.76 37.52 3.01
2543 2684 2.295885 CCGAACCTGTACGTCTAGGAT 58.704 52.381 21.07 11.74 37.52 3.24
2544 2685 1.742761 CCGAACCTGTACGTCTAGGA 58.257 55.000 21.07 0.00 37.52 2.94
2545 2686 0.100146 GCCGAACCTGTACGTCTAGG 59.900 60.000 14.56 14.56 40.01 3.02
2546 2687 0.806868 TGCCGAACCTGTACGTCTAG 59.193 55.000 0.00 0.00 0.00 2.43
2547 2688 1.466856 ATGCCGAACCTGTACGTCTA 58.533 50.000 0.00 0.00 0.00 2.59
2548 2689 0.606604 AATGCCGAACCTGTACGTCT 59.393 50.000 0.00 0.00 0.00 4.18
2549 2690 1.435577 AAATGCCGAACCTGTACGTC 58.564 50.000 0.00 0.00 0.00 4.34
2550 2691 2.340337 GTAAATGCCGAACCTGTACGT 58.660 47.619 0.00 0.00 0.00 3.57
2551 2692 1.322338 CGTAAATGCCGAACCTGTACG 59.678 52.381 0.00 0.00 0.00 3.67
2552 2693 1.662122 CCGTAAATGCCGAACCTGTAC 59.338 52.381 0.00 0.00 0.00 2.90
2553 2694 1.405797 CCCGTAAATGCCGAACCTGTA 60.406 52.381 0.00 0.00 0.00 2.74
2554 2695 0.675522 CCCGTAAATGCCGAACCTGT 60.676 55.000 0.00 0.00 0.00 4.00
2555 2696 1.373590 CCCCGTAAATGCCGAACCTG 61.374 60.000 0.00 0.00 0.00 4.00
2556 2697 1.078001 CCCCGTAAATGCCGAACCT 60.078 57.895 0.00 0.00 0.00 3.50
2557 2698 2.767445 GCCCCGTAAATGCCGAACC 61.767 63.158 0.00 0.00 0.00 3.62
2558 2699 2.767445 GGCCCCGTAAATGCCGAAC 61.767 63.158 0.00 0.00 35.08 3.95
2559 2700 2.438795 GGCCCCGTAAATGCCGAA 60.439 61.111 0.00 0.00 35.08 4.30
2562 2703 0.181824 TAAGAGGCCCCGTAAATGCC 59.818 55.000 0.00 0.00 45.70 4.40
2563 2704 2.047002 TTAAGAGGCCCCGTAAATGC 57.953 50.000 0.00 0.00 0.00 3.56
2564 2705 4.461198 AGATTTAAGAGGCCCCGTAAATG 58.539 43.478 19.94 0.00 0.00 2.32
2565 2706 4.412528 AGAGATTTAAGAGGCCCCGTAAAT 59.587 41.667 16.07 16.07 0.00 1.40
2566 2707 3.778629 AGAGATTTAAGAGGCCCCGTAAA 59.221 43.478 7.77 7.77 0.00 2.01
2567 2708 3.381335 AGAGATTTAAGAGGCCCCGTAA 58.619 45.455 0.00 0.00 0.00 3.18
2568 2709 3.042059 AGAGATTTAAGAGGCCCCGTA 57.958 47.619 0.00 0.00 0.00 4.02
2569 2710 1.880941 AGAGATTTAAGAGGCCCCGT 58.119 50.000 0.00 0.00 0.00 5.28
2570 2711 2.803492 CGAAGAGATTTAAGAGGCCCCG 60.803 54.545 0.00 0.00 0.00 5.73
2571 2712 2.485657 CCGAAGAGATTTAAGAGGCCCC 60.486 54.545 0.00 0.00 0.00 5.80
2572 2713 2.839975 CCGAAGAGATTTAAGAGGCCC 58.160 52.381 0.00 0.00 0.00 5.80
2573 2714 2.214347 GCCGAAGAGATTTAAGAGGCC 58.786 52.381 0.00 0.00 37.54 5.19
2574 2715 2.214347 GGCCGAAGAGATTTAAGAGGC 58.786 52.381 0.00 0.00 42.32 4.70
2575 2716 2.485657 GGGGCCGAAGAGATTTAAGAGG 60.486 54.545 0.00 0.00 0.00 3.69
2576 2717 2.485657 GGGGGCCGAAGAGATTTAAGAG 60.486 54.545 0.00 0.00 0.00 2.85
2577 2718 1.489230 GGGGGCCGAAGAGATTTAAGA 59.511 52.381 0.00 0.00 0.00 2.10
2578 2719 1.968704 GGGGGCCGAAGAGATTTAAG 58.031 55.000 0.00 0.00 0.00 1.85
2594 2735 0.769247 CCCGGGTAGAAATAAGGGGG 59.231 60.000 14.18 0.00 35.36 5.40
2596 2737 1.142262 CACCCCGGGTAGAAATAAGGG 59.858 57.143 21.85 0.95 39.09 3.95
2597 2738 2.121129 TCACCCCGGGTAGAAATAAGG 58.879 52.381 21.85 1.55 32.11 2.69
2598 2739 3.244457 GGATCACCCCGGGTAGAAATAAG 60.244 52.174 21.85 2.41 32.11 1.73
2599 2740 2.707257 GGATCACCCCGGGTAGAAATAA 59.293 50.000 21.85 0.00 32.11 1.40
2600 2741 2.332117 GGATCACCCCGGGTAGAAATA 58.668 52.381 21.85 0.00 32.11 1.40
2601 2742 1.137697 GGATCACCCCGGGTAGAAAT 58.862 55.000 21.85 5.21 32.11 2.17
2602 2743 2.611520 GGATCACCCCGGGTAGAAA 58.388 57.895 21.85 0.00 32.11 2.52
2603 2744 4.386591 GGATCACCCCGGGTAGAA 57.613 61.111 21.85 1.59 32.11 2.10
2613 2754 2.022240 GAGAGTGAGGCGGGATCACC 62.022 65.000 2.62 0.00 46.68 4.02
2614 2755 1.439644 GAGAGTGAGGCGGGATCAC 59.560 63.158 0.00 0.00 46.01 3.06
2615 2756 1.758514 GGAGAGTGAGGCGGGATCA 60.759 63.158 0.00 0.00 0.00 2.92
2616 2757 1.045911 AAGGAGAGTGAGGCGGGATC 61.046 60.000 0.00 0.00 0.00 3.36
2617 2758 1.002274 AAGGAGAGTGAGGCGGGAT 59.998 57.895 0.00 0.00 0.00 3.85
2618 2759 1.682684 GAAGGAGAGTGAGGCGGGA 60.683 63.158 0.00 0.00 0.00 5.14
2619 2760 0.395862 TAGAAGGAGAGTGAGGCGGG 60.396 60.000 0.00 0.00 0.00 6.13
2620 2761 1.698506 ATAGAAGGAGAGTGAGGCGG 58.301 55.000 0.00 0.00 0.00 6.13
2621 2762 2.690497 TGAATAGAAGGAGAGTGAGGCG 59.310 50.000 0.00 0.00 0.00 5.52
2622 2763 4.744795 TTGAATAGAAGGAGAGTGAGGC 57.255 45.455 0.00 0.00 0.00 4.70
2623 2764 6.985645 CAGAATTGAATAGAAGGAGAGTGAGG 59.014 42.308 0.00 0.00 0.00 3.86
2624 2765 7.555087 ACAGAATTGAATAGAAGGAGAGTGAG 58.445 38.462 0.00 0.00 0.00 3.51
2625 2766 7.487822 ACAGAATTGAATAGAAGGAGAGTGA 57.512 36.000 0.00 0.00 0.00 3.41
2626 2767 9.658799 TTAACAGAATTGAATAGAAGGAGAGTG 57.341 33.333 0.00 0.00 0.00 3.51
2627 2768 9.883142 CTTAACAGAATTGAATAGAAGGAGAGT 57.117 33.333 0.00 0.00 0.00 3.24
2628 2769 8.825745 GCTTAACAGAATTGAATAGAAGGAGAG 58.174 37.037 0.00 0.00 0.00 3.20
2629 2770 7.770897 GGCTTAACAGAATTGAATAGAAGGAGA 59.229 37.037 0.00 0.00 0.00 3.71
2630 2771 7.554118 TGGCTTAACAGAATTGAATAGAAGGAG 59.446 37.037 0.00 0.00 0.00 3.69
2631 2772 7.402054 TGGCTTAACAGAATTGAATAGAAGGA 58.598 34.615 0.00 0.00 0.00 3.36
2632 2773 7.630242 TGGCTTAACAGAATTGAATAGAAGG 57.370 36.000 0.00 0.00 0.00 3.46
2635 2776 9.241919 TGATTTGGCTTAACAGAATTGAATAGA 57.758 29.630 0.00 0.00 0.00 1.98
2636 2777 9.512435 CTGATTTGGCTTAACAGAATTGAATAG 57.488 33.333 0.00 0.00 0.00 1.73
2637 2778 7.975616 GCTGATTTGGCTTAACAGAATTGAATA 59.024 33.333 0.00 0.00 0.00 1.75
2638 2779 6.815142 GCTGATTTGGCTTAACAGAATTGAAT 59.185 34.615 0.00 0.00 0.00 2.57
2639 2780 6.158598 GCTGATTTGGCTTAACAGAATTGAA 58.841 36.000 0.00 0.00 0.00 2.69
2640 2781 5.336690 GGCTGATTTGGCTTAACAGAATTGA 60.337 40.000 0.00 0.00 0.00 2.57
2641 2782 4.866486 GGCTGATTTGGCTTAACAGAATTG 59.134 41.667 0.00 0.00 0.00 2.32
2642 2783 4.380867 CGGCTGATTTGGCTTAACAGAATT 60.381 41.667 0.00 0.00 0.00 2.17
2643 2784 3.129287 CGGCTGATTTGGCTTAACAGAAT 59.871 43.478 0.00 0.00 0.00 2.40
2644 2785 2.487762 CGGCTGATTTGGCTTAACAGAA 59.512 45.455 0.00 0.00 0.00 3.02
2645 2786 2.083774 CGGCTGATTTGGCTTAACAGA 58.916 47.619 0.00 0.00 0.00 3.41
2646 2787 1.812571 ACGGCTGATTTGGCTTAACAG 59.187 47.619 0.00 0.00 0.00 3.16
2647 2788 1.904287 ACGGCTGATTTGGCTTAACA 58.096 45.000 0.00 0.00 0.00 2.41
2648 2789 4.632538 ATTACGGCTGATTTGGCTTAAC 57.367 40.909 0.00 0.00 31.33 2.01
2649 2790 6.761099 TTAATTACGGCTGATTTGGCTTAA 57.239 33.333 0.00 0.00 32.61 1.85
2650 2791 6.770785 AGATTAATTACGGCTGATTTGGCTTA 59.229 34.615 0.00 0.00 0.00 3.09
2651 2792 5.594317 AGATTAATTACGGCTGATTTGGCTT 59.406 36.000 0.00 0.00 0.00 4.35
2652 2793 5.133221 AGATTAATTACGGCTGATTTGGCT 58.867 37.500 0.00 0.00 0.00 4.75
2653 2794 5.239525 AGAGATTAATTACGGCTGATTTGGC 59.760 40.000 0.00 0.00 0.00 4.52
2654 2795 6.662616 CAGAGATTAATTACGGCTGATTTGG 58.337 40.000 0.00 0.00 0.00 3.28
2655 2796 6.017605 AGCAGAGATTAATTACGGCTGATTTG 60.018 38.462 15.17 0.00 33.27 2.32
2656 2797 6.058183 AGCAGAGATTAATTACGGCTGATTT 58.942 36.000 15.17 0.00 33.27 2.17
2657 2798 5.615289 AGCAGAGATTAATTACGGCTGATT 58.385 37.500 15.17 0.00 33.27 2.57
2658 2799 5.220710 AGCAGAGATTAATTACGGCTGAT 57.779 39.130 15.17 4.98 33.27 2.90
2659 2800 4.621991 GAGCAGAGATTAATTACGGCTGA 58.378 43.478 18.69 0.00 34.45 4.26
2660 2801 3.426859 CGAGCAGAGATTAATTACGGCTG 59.573 47.826 18.69 10.45 34.45 4.85
2661 2802 3.068307 ACGAGCAGAGATTAATTACGGCT 59.932 43.478 15.60 15.60 36.63 5.52
2662 2803 3.381949 ACGAGCAGAGATTAATTACGGC 58.618 45.455 0.00 8.83 0.00 5.68
2663 2804 7.639162 AATTACGAGCAGAGATTAATTACGG 57.361 36.000 0.00 0.00 0.00 4.02
2664 2805 8.636843 GGTAATTACGAGCAGAGATTAATTACG 58.363 37.037 9.46 0.00 41.92 3.18
2665 2806 8.923683 GGGTAATTACGAGCAGAGATTAATTAC 58.076 37.037 9.46 11.52 41.10 1.89
2666 2807 7.811236 CGGGTAATTACGAGCAGAGATTAATTA 59.189 37.037 9.46 0.00 0.00 1.40
2667 2808 6.645415 CGGGTAATTACGAGCAGAGATTAATT 59.355 38.462 9.46 0.00 0.00 1.40
2668 2809 6.157211 CGGGTAATTACGAGCAGAGATTAAT 58.843 40.000 9.46 0.00 0.00 1.40
2669 2810 5.068198 ACGGGTAATTACGAGCAGAGATTAA 59.932 40.000 9.46 0.00 0.00 1.40
2670 2811 4.581824 ACGGGTAATTACGAGCAGAGATTA 59.418 41.667 9.46 0.00 0.00 1.75
2671 2812 3.383825 ACGGGTAATTACGAGCAGAGATT 59.616 43.478 9.46 0.00 0.00 2.40
2672 2813 2.957006 ACGGGTAATTACGAGCAGAGAT 59.043 45.455 9.46 0.00 0.00 2.75
2673 2814 2.372264 ACGGGTAATTACGAGCAGAGA 58.628 47.619 9.46 0.00 0.00 3.10
2674 2815 2.865343 ACGGGTAATTACGAGCAGAG 57.135 50.000 9.46 0.00 0.00 3.35
2675 2816 3.633525 ACATACGGGTAATTACGAGCAGA 59.366 43.478 9.46 0.00 0.00 4.26
2676 2817 3.734231 CACATACGGGTAATTACGAGCAG 59.266 47.826 9.46 0.01 0.00 4.24
2677 2818 3.130869 ACACATACGGGTAATTACGAGCA 59.869 43.478 9.46 0.00 0.00 4.26
2678 2819 3.709987 ACACATACGGGTAATTACGAGC 58.290 45.455 9.46 0.00 0.00 5.03
2679 2820 4.913924 GCTACACATACGGGTAATTACGAG 59.086 45.833 9.46 8.20 0.00 4.18
2680 2821 4.337836 TGCTACACATACGGGTAATTACGA 59.662 41.667 9.46 0.00 0.00 3.43
2681 2822 4.609947 TGCTACACATACGGGTAATTACG 58.390 43.478 9.46 1.91 0.00 3.18
2682 2823 6.565247 GCAATGCTACACATACGGGTAATTAC 60.565 42.308 7.09 7.09 38.34 1.89
2683 2824 5.467399 GCAATGCTACACATACGGGTAATTA 59.533 40.000 0.00 0.00 38.34 1.40
2684 2825 4.274950 GCAATGCTACACATACGGGTAATT 59.725 41.667 0.00 0.00 38.34 1.40
2685 2826 3.813166 GCAATGCTACACATACGGGTAAT 59.187 43.478 0.00 0.00 38.34 1.89
2686 2827 3.118555 AGCAATGCTACACATACGGGTAA 60.119 43.478 5.69 0.00 38.34 2.85
2687 2828 2.432874 AGCAATGCTACACATACGGGTA 59.567 45.455 5.69 0.00 38.34 3.69
2688 2829 1.209504 AGCAATGCTACACATACGGGT 59.790 47.619 5.69 0.00 38.34 5.28
2689 2830 1.867233 GAGCAATGCTACACATACGGG 59.133 52.381 8.12 0.00 39.88 5.28
2690 2831 1.522676 CGAGCAATGCTACACATACGG 59.477 52.381 8.12 0.00 39.88 4.02
2691 2832 2.034591 CACGAGCAATGCTACACATACG 60.035 50.000 8.12 8.27 39.88 3.06
2692 2833 2.930040 ACACGAGCAATGCTACACATAC 59.070 45.455 8.12 0.00 39.88 2.39
2693 2834 3.245518 ACACGAGCAATGCTACACATA 57.754 42.857 8.12 0.00 39.88 2.29
2694 2835 2.099141 ACACGAGCAATGCTACACAT 57.901 45.000 8.12 0.00 39.88 3.21
2695 2836 2.734276 TACACGAGCAATGCTACACA 57.266 45.000 8.12 0.00 39.88 3.72
2696 2837 2.930040 ACATACACGAGCAATGCTACAC 59.070 45.455 8.12 0.00 39.88 2.90
2697 2838 2.929398 CACATACACGAGCAATGCTACA 59.071 45.455 8.12 0.00 39.88 2.74
2698 2839 2.285834 GCACATACACGAGCAATGCTAC 60.286 50.000 8.12 0.90 39.88 3.58
2699 2840 1.933181 GCACATACACGAGCAATGCTA 59.067 47.619 8.12 0.00 39.88 3.49
2700 2841 0.729116 GCACATACACGAGCAATGCT 59.271 50.000 7.79 7.79 43.88 3.79
2701 2842 0.587242 CGCACATACACGAGCAATGC 60.587 55.000 0.00 0.00 0.00 3.56
2702 2843 0.026674 CCGCACATACACGAGCAATG 59.973 55.000 0.00 0.00 0.00 2.82
2703 2844 0.391130 ACCGCACATACACGAGCAAT 60.391 50.000 0.00 0.00 0.00 3.56
2704 2845 0.601576 AACCGCACATACACGAGCAA 60.602 50.000 0.00 0.00 0.00 3.91
2705 2846 1.005512 AACCGCACATACACGAGCA 60.006 52.632 0.00 0.00 0.00 4.26
2706 2847 1.289109 ACAACCGCACATACACGAGC 61.289 55.000 0.00 0.00 0.00 5.03
2707 2848 0.438445 CACAACCGCACATACACGAG 59.562 55.000 0.00 0.00 0.00 4.18
2708 2849 1.561717 GCACAACCGCACATACACGA 61.562 55.000 0.00 0.00 0.00 4.35
2709 2850 1.154488 GCACAACCGCACATACACG 60.154 57.895 0.00 0.00 0.00 4.49
2710 2851 1.154488 CGCACAACCGCACATACAC 60.154 57.895 0.00 0.00 0.00 2.90
2711 2852 3.249013 CGCACAACCGCACATACA 58.751 55.556 0.00 0.00 0.00 2.29
2785 2926 0.319555 GCACTGTCACGAGGCTACAA 60.320 55.000 0.00 0.00 0.00 2.41
2800 2941 0.888285 GCAGCTTGAGGAAGTGCACT 60.888 55.000 15.25 15.25 36.77 4.40
2828 2969 6.546395 ACACTGAAATAGCTGAAATAAAGCG 58.454 36.000 0.00 0.00 45.59 4.68
2908 6384 5.730269 CGCAAGACTTGTAAACTAAAACGA 58.270 37.500 16.39 0.00 43.02 3.85
2910 6386 5.267776 TGCGCAAGACTTGTAAACTAAAAC 58.732 37.500 8.16 0.00 43.02 2.43
2912 6388 5.682943 ATGCGCAAGACTTGTAAACTAAA 57.317 34.783 17.11 0.00 43.02 1.85
2913 6389 6.978343 ATATGCGCAAGACTTGTAAACTAA 57.022 33.333 17.11 0.00 43.02 2.24
2914 6390 6.477688 GGTATATGCGCAAGACTTGTAAACTA 59.522 38.462 17.11 0.00 43.02 2.24
2915 6391 5.293569 GGTATATGCGCAAGACTTGTAAACT 59.706 40.000 17.11 0.00 43.02 2.66
2916 6392 5.293569 AGGTATATGCGCAAGACTTGTAAAC 59.706 40.000 17.11 1.08 43.02 2.01
2917 6393 5.424757 AGGTATATGCGCAAGACTTGTAAA 58.575 37.500 17.11 3.07 43.02 2.01
2919 6395 4.665833 AGGTATATGCGCAAGACTTGTA 57.334 40.909 17.11 0.00 43.02 2.41
2920 6396 3.543680 AGGTATATGCGCAAGACTTGT 57.456 42.857 17.11 0.00 43.02 3.16
2921 6397 3.990469 CCTAGGTATATGCGCAAGACTTG 59.010 47.826 17.11 11.02 43.02 3.16
2922 6398 3.641906 ACCTAGGTATATGCGCAAGACTT 59.358 43.478 17.11 11.79 43.02 3.01
2923 6399 3.231818 ACCTAGGTATATGCGCAAGACT 58.768 45.455 17.11 11.34 43.02 3.24
2924 6400 3.662247 ACCTAGGTATATGCGCAAGAC 57.338 47.619 17.11 12.84 43.02 3.01
2925 6401 3.386726 ACAACCTAGGTATATGCGCAAGA 59.613 43.478 17.11 5.87 43.02 3.02
2926 6402 3.728845 ACAACCTAGGTATATGCGCAAG 58.271 45.455 17.11 4.85 43.44 4.01
2927 6403 3.133183 TGACAACCTAGGTATATGCGCAA 59.867 43.478 17.11 4.13 0.00 4.85
2928 6404 2.696187 TGACAACCTAGGTATATGCGCA 59.304 45.455 16.67 14.96 0.00 6.09
2929 6405 3.380479 TGACAACCTAGGTATATGCGC 57.620 47.619 16.67 0.00 0.00 6.09
2930 6406 6.861065 AAATTGACAACCTAGGTATATGCG 57.139 37.500 16.67 2.47 0.00 4.73
2934 6410 9.841295 GGTGATAAAATTGACAACCTAGGTATA 57.159 33.333 16.67 0.00 0.00 1.47
2935 6411 7.778382 GGGTGATAAAATTGACAACCTAGGTAT 59.222 37.037 16.67 6.57 37.18 2.73
2936 6412 7.037153 AGGGTGATAAAATTGACAACCTAGGTA 60.037 37.037 16.67 0.00 46.75 3.08
2937 6413 5.949952 GGGTGATAAAATTGACAACCTAGGT 59.050 40.000 9.21 9.21 37.18 3.08
2938 6414 6.187682 AGGGTGATAAAATTGACAACCTAGG 58.812 40.000 7.41 7.41 46.75 3.02
2991 6467 9.003658 ACTTCAGATGTTCTATTTTGAAACGAT 57.996 29.630 0.00 0.00 0.00 3.73
2992 6468 8.378172 ACTTCAGATGTTCTATTTTGAAACGA 57.622 30.769 0.00 0.00 0.00 3.85
2993 6469 9.450807 AAACTTCAGATGTTCTATTTTGAAACG 57.549 29.630 2.28 0.00 0.00 3.60
3045 6521 9.575868 TCAATTTAACCAACCTAATACAAGTCA 57.424 29.630 0.00 0.00 0.00 3.41
3046 6522 9.836076 GTCAATTTAACCAACCTAATACAAGTC 57.164 33.333 0.00 0.00 0.00 3.01
3047 6523 8.508875 CGTCAATTTAACCAACCTAATACAAGT 58.491 33.333 0.00 0.00 0.00 3.16
3048 6524 8.723311 TCGTCAATTTAACCAACCTAATACAAG 58.277 33.333 0.00 0.00 0.00 3.16
3049 6525 8.505625 GTCGTCAATTTAACCAACCTAATACAA 58.494 33.333 0.00 0.00 0.00 2.41
3050 6526 7.119553 GGTCGTCAATTTAACCAACCTAATACA 59.880 37.037 0.00 0.00 0.00 2.29
3051 6527 7.335171 AGGTCGTCAATTTAACCAACCTAATAC 59.665 37.037 7.30 0.00 34.22 1.89
3052 6528 7.396418 AGGTCGTCAATTTAACCAACCTAATA 58.604 34.615 7.30 0.00 34.22 0.98
3053 6529 6.243148 AGGTCGTCAATTTAACCAACCTAAT 58.757 36.000 7.30 0.00 34.22 1.73
3054 6530 5.623169 AGGTCGTCAATTTAACCAACCTAA 58.377 37.500 7.30 0.00 34.22 2.69
3055 6531 5.231702 AGGTCGTCAATTTAACCAACCTA 57.768 39.130 7.30 0.00 34.22 3.08
3056 6532 4.094830 AGGTCGTCAATTTAACCAACCT 57.905 40.909 0.00 0.00 34.09 3.50
3057 6533 4.393990 CCTAGGTCGTCAATTTAACCAACC 59.606 45.833 0.00 0.00 34.09 3.77
3058 6534 4.393990 CCCTAGGTCGTCAATTTAACCAAC 59.606 45.833 8.29 0.00 34.09 3.77
3059 6535 4.566070 CCCCTAGGTCGTCAATTTAACCAA 60.566 45.833 8.29 0.00 34.09 3.67
3060 6536 3.054948 CCCCTAGGTCGTCAATTTAACCA 60.055 47.826 8.29 0.00 34.09 3.67
3061 6537 3.054875 ACCCCTAGGTCGTCAATTTAACC 60.055 47.826 8.29 0.00 46.45 2.85
3062 6538 4.212143 ACCCCTAGGTCGTCAATTTAAC 57.788 45.455 8.29 0.00 46.45 2.01
3063 6539 5.627503 GCTTACCCCTAGGTCGTCAATTTAA 60.628 44.000 8.29 0.00 46.45 1.52
3064 6540 4.141869 GCTTACCCCTAGGTCGTCAATTTA 60.142 45.833 8.29 0.00 46.45 1.40
3065 6541 3.370209 GCTTACCCCTAGGTCGTCAATTT 60.370 47.826 8.29 0.00 46.45 1.82
3066 6542 2.169978 GCTTACCCCTAGGTCGTCAATT 59.830 50.000 8.29 0.00 46.45 2.32
3067 6543 1.761198 GCTTACCCCTAGGTCGTCAAT 59.239 52.381 8.29 0.00 46.45 2.57
3068 6544 1.188863 GCTTACCCCTAGGTCGTCAA 58.811 55.000 8.29 0.00 46.45 3.18
3069 6545 1.033746 CGCTTACCCCTAGGTCGTCA 61.034 60.000 8.29 0.00 46.45 4.35
3070 6546 1.732308 CGCTTACCCCTAGGTCGTC 59.268 63.158 8.29 0.00 46.45 4.20
3071 6547 2.421399 GCGCTTACCCCTAGGTCGT 61.421 63.158 8.29 6.00 46.45 4.34
3072 6548 2.416260 GCGCTTACCCCTAGGTCG 59.584 66.667 8.29 0.00 46.45 4.79
3073 6549 1.143401 GTGCGCTTACCCCTAGGTC 59.857 63.158 9.73 0.00 46.45 3.85
3075 6551 2.106332 CGTGCGCTTACCCCTAGG 59.894 66.667 9.73 0.06 40.04 3.02
3076 6552 2.585247 GCGTGCGCTTACCCCTAG 60.585 66.667 9.73 0.00 38.26 3.02
3077 6553 4.151582 GGCGTGCGCTTACCCCTA 62.152 66.667 16.21 0.00 41.60 3.53
3081 6557 3.652539 TACAGGGCGTGCGCTTACC 62.653 63.158 16.21 6.80 41.60 2.85
3082 6558 1.293267 TTTACAGGGCGTGCGCTTAC 61.293 55.000 16.21 0.00 41.60 2.34
3083 6559 1.004799 TTTACAGGGCGTGCGCTTA 60.005 52.632 16.21 3.25 41.60 3.09
3084 6560 2.281208 TTTACAGGGCGTGCGCTT 60.281 55.556 16.21 4.14 41.60 4.68
3085 6561 3.047877 GTTTACAGGGCGTGCGCT 61.048 61.111 16.21 8.81 41.60 5.92
3086 6562 3.047877 AGTTTACAGGGCGTGCGC 61.048 61.111 7.17 8.17 41.06 6.09
3087 6563 2.677003 CCAGTTTACAGGGCGTGCG 61.677 63.158 7.17 0.00 0.00 5.34
3088 6564 1.298859 CTCCAGTTTACAGGGCGTGC 61.299 60.000 7.17 0.00 0.00 5.34
3089 6565 0.673644 CCTCCAGTTTACAGGGCGTG 60.674 60.000 5.50 5.50 0.00 5.34
3090 6566 0.834687 TCCTCCAGTTTACAGGGCGT 60.835 55.000 0.00 0.00 0.00 5.68
3091 6567 0.108138 CTCCTCCAGTTTACAGGGCG 60.108 60.000 0.00 0.00 0.00 6.13
3092 6568 1.066071 GTCTCCTCCAGTTTACAGGGC 60.066 57.143 0.00 0.00 0.00 5.19
3093 6569 1.555533 GGTCTCCTCCAGTTTACAGGG 59.444 57.143 0.00 0.00 0.00 4.45
3094 6570 2.541466 AGGTCTCCTCCAGTTTACAGG 58.459 52.381 0.00 0.00 0.00 4.00
3095 6571 4.160626 CCTAAGGTCTCCTCCAGTTTACAG 59.839 50.000 0.00 0.00 30.89 2.74
3096 6572 4.094476 CCTAAGGTCTCCTCCAGTTTACA 58.906 47.826 0.00 0.00 30.89 2.41
3097 6573 4.351127 TCCTAAGGTCTCCTCCAGTTTAC 58.649 47.826 0.00 0.00 30.89 2.01
3098 6574 4.687262 TCCTAAGGTCTCCTCCAGTTTA 57.313 45.455 0.00 0.00 30.89 2.01
3099 6575 3.562108 TCCTAAGGTCTCCTCCAGTTT 57.438 47.619 0.00 0.00 30.89 2.66
3100 6576 3.246167 ACATCCTAAGGTCTCCTCCAGTT 60.246 47.826 0.00 0.00 30.89 3.16
3101 6577 2.316372 ACATCCTAAGGTCTCCTCCAGT 59.684 50.000 0.00 0.00 30.89 4.00
3102 6578 2.697751 CACATCCTAAGGTCTCCTCCAG 59.302 54.545 0.00 0.00 30.89 3.86
3103 6579 2.752030 CACATCCTAAGGTCTCCTCCA 58.248 52.381 0.00 0.00 30.89 3.86
3104 6580 1.414550 GCACATCCTAAGGTCTCCTCC 59.585 57.143 0.00 0.00 30.89 4.30
3105 6581 2.111384 TGCACATCCTAAGGTCTCCTC 58.889 52.381 0.00 0.00 30.89 3.71
3106 6582 1.834263 GTGCACATCCTAAGGTCTCCT 59.166 52.381 13.17 0.00 33.87 3.69
3107 6583 1.134371 GGTGCACATCCTAAGGTCTCC 60.134 57.143 20.43 0.00 0.00 3.71
3108 6584 1.471676 CGGTGCACATCCTAAGGTCTC 60.472 57.143 20.43 0.00 0.00 3.36
3109 6585 0.537188 CGGTGCACATCCTAAGGTCT 59.463 55.000 20.43 0.00 0.00 3.85
3110 6586 0.249398 ACGGTGCACATCCTAAGGTC 59.751 55.000 20.43 0.00 0.00 3.85
3111 6587 0.036388 CACGGTGCACATCCTAAGGT 60.036 55.000 20.43 0.00 0.00 3.50
3112 6588 0.249120 TCACGGTGCACATCCTAAGG 59.751 55.000 20.43 0.00 0.00 2.69
3119 6595 1.600636 CCTTGGTCACGGTGCACAT 60.601 57.895 20.43 2.58 0.00 3.21
3137 6613 5.690997 AGTTTTCTCGTTTTTCCCTCATC 57.309 39.130 0.00 0.00 0.00 2.92
3188 6664 3.057315 GCAGTGGTTAGTTCATTGCATGT 60.057 43.478 6.68 0.00 44.01 3.21
3193 6669 2.548057 ACGTGCAGTGGTTAGTTCATTG 59.452 45.455 0.00 0.00 0.00 2.82
3212 6688 5.544136 TGACATATCAACCAAACATGACG 57.456 39.130 0.00 0.00 0.00 4.35
3248 6724 1.134098 ACCAATAAGAGATGTGGGGCG 60.134 52.381 0.00 0.00 35.32 6.13
3250 6726 4.235079 TCAACCAATAAGAGATGTGGGG 57.765 45.455 0.00 0.00 35.32 4.96
3255 6731 9.551734 TCTTGACATATCAACCAATAAGAGATG 57.448 33.333 0.00 0.00 40.01 2.90
3287 6763 5.915196 GGTGCATTAACTCTCACTTTGTTTC 59.085 40.000 0.00 0.00 0.00 2.78
3292 6768 2.484264 GCGGTGCATTAACTCTCACTTT 59.516 45.455 0.00 0.00 0.00 2.66
3313 6789 7.087639 TCAAATAATCCCAAAACACTTAAGCG 58.912 34.615 1.29 0.00 0.00 4.68
3314 6790 9.435688 AATCAAATAATCCCAAAACACTTAAGC 57.564 29.630 1.29 0.00 0.00 3.09
3404 6880 3.254411 TGCCGCAACAAGATAAATCAACA 59.746 39.130 0.00 0.00 0.00 3.33
3427 6903 1.369625 CAGACGGAGGTTGTATTGCC 58.630 55.000 0.00 0.00 0.00 4.52
3434 6915 4.700213 ACAATTAATTCCAGACGGAGGTTG 59.300 41.667 0.00 0.00 44.10 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.