Multiple sequence alignment - TraesCS7B01G258700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G258700 chr7B 100.000 3088 0 0 1 3088 479195845 479198932 0.000000e+00 5703.0
1 TraesCS7B01G258700 chr7B 94.044 319 17 1 2755 3071 106574888 106574570 1.670000e-132 483.0
2 TraesCS7B01G258700 chr7B 91.818 110 7 2 2455 2563 412819370 412819262 5.330000e-33 152.0
3 TraesCS7B01G258700 chr7D 92.982 1539 66 17 894 2426 457140513 457142015 0.000000e+00 2206.0
4 TraesCS7B01G258700 chr7D 94.989 898 42 3 1 897 457110224 457111119 0.000000e+00 1406.0
5 TraesCS7B01G258700 chr7D 94.286 315 16 1 2756 3068 440589318 440589632 5.990000e-132 481.0
6 TraesCS7B01G258700 chr7D 92.806 139 9 1 2616 2753 457142350 457142488 1.880000e-47 200.0
7 TraesCS7B01G258700 chr7D 95.745 94 3 1 2464 2557 538028547 538028639 1.920000e-32 150.0
8 TraesCS7B01G258700 chr7D 94.203 69 4 0 2555 2623 457142250 457142318 4.210000e-19 106.0
9 TraesCS7B01G258700 chr7A 92.576 1549 84 16 932 2472 543361671 543360146 0.000000e+00 2194.0
10 TraesCS7B01G258700 chr7A 92.806 139 9 1 2619 2756 543360041 543359903 1.880000e-47 200.0
11 TraesCS7B01G258700 chr7A 97.826 46 1 0 836 881 475802033 475802078 2.550000e-11 80.5
12 TraesCS7B01G258700 chr1B 95.208 313 13 1 2756 3066 230032759 230032447 7.690000e-136 494.0
13 TraesCS7B01G258700 chr6D 94.603 315 15 1 2756 3068 365722850 365722536 1.290000e-133 486.0
14 TraesCS7B01G258700 chr6D 96.703 91 3 0 2466 2556 265690348 265690438 5.330000e-33 152.0
15 TraesCS7B01G258700 chr1D 94.586 314 15 1 2755 3066 171745080 171745393 4.630000e-133 484.0
16 TraesCS7B01G258700 chr1D 97.753 89 2 0 2471 2559 394862598 394862510 1.480000e-33 154.0
17 TraesCS7B01G258700 chr1D 77.108 166 28 8 15 170 203365752 203365917 1.530000e-13 87.9
18 TraesCS7B01G258700 chr6A 93.769 321 16 3 2755 3071 516259203 516258883 2.150000e-131 479.0
19 TraesCS7B01G258700 chr5D 93.730 319 18 1 2755 3071 554400752 554400434 7.750000e-131 477.0
20 TraesCS7B01G258700 chr5D 81.373 510 88 6 297 802 161521862 161521356 2.870000e-110 409.0
21 TraesCS7B01G258700 chr5D 92.857 98 5 1 2469 2566 367519798 367519703 1.150000e-29 141.0
22 TraesCS7B01G258700 chr3B 93.478 322 18 2 2755 3073 430173340 430173661 2.790000e-130 475.0
23 TraesCS7B01G258700 chr4B 93.189 323 19 2 2755 3074 38549856 38549534 3.600000e-129 472.0
24 TraesCS7B01G258700 chr3D 95.745 94 4 0 2464 2557 434026471 434026378 5.330000e-33 152.0
25 TraesCS7B01G258700 chr2B 95.789 95 3 1 2470 2563 160407614 160407520 5.330000e-33 152.0
26 TraesCS7B01G258700 chr2B 94.845 97 4 1 2471 2566 653585348 653585444 1.920000e-32 150.0
27 TraesCS7B01G258700 chr5A 94.845 97 4 1 2468 2563 526398850 526398946 1.920000e-32 150.0
28 TraesCS7B01G258700 chr4D 95.652 46 2 0 836 881 11599898 11599853 1.190000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G258700 chr7B 479195845 479198932 3087 False 5703.000000 5703 100.000000 1 3088 1 chr7B.!!$F1 3087
1 TraesCS7B01G258700 chr7D 457110224 457111119 895 False 1406.000000 1406 94.989000 1 897 1 chr7D.!!$F2 896
2 TraesCS7B01G258700 chr7D 457140513 457142488 1975 False 837.333333 2206 93.330333 894 2753 3 chr7D.!!$F4 1859
3 TraesCS7B01G258700 chr7A 543359903 543361671 1768 True 1197.000000 2194 92.691000 932 2756 2 chr7A.!!$R1 1824
4 TraesCS7B01G258700 chr5D 161521356 161521862 506 True 409.000000 409 81.373000 297 802 1 chr5D.!!$R1 505

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
219 221 0.103937 GATCCCTGAGAAGAGCCACG 59.896 60.0 0.00 0.0 0.00 4.94 F
1697 1706 0.320771 TCTTCTCGGCAAGGAAGCAC 60.321 55.0 6.84 0.0 38.86 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1806 1815 0.103937 CCGATCCTCTCCAGCTGAAC 59.896 60.0 17.39 0.0 0.0 3.18 R
2844 3096 0.036010 CTGGGGTCACCACACTCATC 60.036 60.0 0.00 0.0 46.8 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.023980 ACCGAGACTATCATCTCAAACCA 58.976 43.478 3.85 0.00 44.67 3.67
75 76 1.262417 TGTTGACATGCTACCCTCGA 58.738 50.000 0.00 0.00 0.00 4.04
112 113 2.256306 GATGTGGGAAATTTGGTGGGT 58.744 47.619 0.00 0.00 0.00 4.51
157 158 2.912771 TCAGTTTCAAAGTCCGCTGAA 58.087 42.857 0.00 0.00 31.14 3.02
219 221 0.103937 GATCCCTGAGAAGAGCCACG 59.896 60.000 0.00 0.00 0.00 4.94
259 261 0.461516 ATGCGAGAGGTCTGCATGTG 60.462 55.000 12.97 0.00 46.82 3.21
286 288 3.826157 CAGGAAATAACAAGGAGCAACCA 59.174 43.478 2.96 0.00 42.04 3.67
289 291 1.821216 ATAACAAGGAGCAACCACCG 58.179 50.000 2.96 0.00 42.04 4.94
320 322 2.041922 TCCCGCCTGATAGCCACT 60.042 61.111 0.00 0.00 0.00 4.00
387 389 3.181486 CGTGGAGCTTTAGCAGTGATCTA 60.181 47.826 4.33 0.00 45.16 1.98
397 399 8.314751 GCTTTAGCAGTGATCTATAGGGATAAA 58.685 37.037 0.00 0.00 41.59 1.40
517 519 3.941483 CCACTGATTTACATGTCCACTCC 59.059 47.826 0.00 0.00 0.00 3.85
541 543 0.376152 GCGTGGCATCAGATTGTCTG 59.624 55.000 0.00 0.55 45.59 3.51
563 565 7.431668 GTCTGGAAGTAGTGACGAATATACAAC 59.568 40.741 0.00 0.00 33.76 3.32
670 675 8.717821 CGTGAAAATAGGAAACATAACAGAGAA 58.282 33.333 0.00 0.00 0.00 2.87
708 713 5.799827 AAGACAGTTGCTTCTCTTACTCT 57.200 39.130 0.00 0.00 0.00 3.24
741 746 1.175983 TGGCTTACTTGTTTGCCCGG 61.176 55.000 0.00 0.00 44.32 5.73
763 768 4.511527 GCATCATCTGTATCCCTATGTGG 58.488 47.826 0.00 0.00 0.00 4.17
825 830 7.786114 ACGCATTTCAATATTTGTCAAAGTTG 58.214 30.769 15.16 15.16 0.00 3.16
876 881 7.148507 CCCTGAGATGAGATAAATTACAATCGC 60.149 40.741 0.00 0.00 0.00 4.58
881 886 4.515191 TGAGATAAATTACAATCGCAGCCC 59.485 41.667 0.00 0.00 30.01 5.19
882 887 4.718961 AGATAAATTACAATCGCAGCCCT 58.281 39.130 0.00 0.00 0.00 5.19
930 935 2.877097 TGGAGATGCCAAGCAAGTAA 57.123 45.000 0.00 0.00 45.87 2.24
1004 1013 0.630673 TGTTCTGGGGAATCCATGGG 59.369 55.000 13.02 0.00 46.01 4.00
1035 1044 0.820074 CGAGCTCGGTGGTAGGATCT 60.820 60.000 28.40 0.00 35.37 2.75
1088 1097 2.679716 GCCTTGGCTCAGACCCAT 59.320 61.111 4.11 0.00 31.26 4.00
1228 1237 2.601666 AGCAGCAGGTCGGAGTGA 60.602 61.111 0.00 0.00 0.00 3.41
1236 1245 0.905337 AGGTCGGAGTGAAAGGAGGG 60.905 60.000 0.00 0.00 0.00 4.30
1294 1303 1.073923 TGCTTGTTCTTCCTTCCCCTC 59.926 52.381 0.00 0.00 0.00 4.30
1295 1304 1.614583 GCTTGTTCTTCCTTCCCCTCC 60.615 57.143 0.00 0.00 0.00 4.30
1296 1305 1.988846 CTTGTTCTTCCTTCCCCTCCT 59.011 52.381 0.00 0.00 0.00 3.69
1478 1487 2.527123 TACCACCAGACCGCCCAA 60.527 61.111 0.00 0.00 0.00 4.12
1507 1516 0.534652 GAGATAGCCAAGCTGCTGGG 60.535 60.000 19.14 19.14 42.77 4.45
1697 1706 0.320771 TCTTCTCGGCAAGGAAGCAC 60.321 55.000 6.84 0.00 38.86 4.40
1806 1815 1.097232 TTTTGAGATCATGGCGCTGG 58.903 50.000 7.64 0.00 0.00 4.85
1826 1835 1.045350 TTCAGCTGGAGAGGATCGGG 61.045 60.000 15.13 0.00 42.67 5.14
2012 2021 2.165845 ACAGTTCTACGATGTGCCTACC 59.834 50.000 0.00 0.00 0.00 3.18
2220 2233 9.709495 AGTATTGATTTGTTTTGTTACATGCAT 57.291 25.926 0.00 0.00 0.00 3.96
2224 2237 9.713740 TTGATTTGTTTTGTTACATGCATTTTC 57.286 25.926 0.00 0.00 0.00 2.29
2225 2238 8.341173 TGATTTGTTTTGTTACATGCATTTTCC 58.659 29.630 0.00 0.00 0.00 3.13
2226 2239 7.615582 TTTGTTTTGTTACATGCATTTTCCA 57.384 28.000 0.00 0.00 0.00 3.53
2227 2240 7.798596 TTGTTTTGTTACATGCATTTTCCAT 57.201 28.000 0.00 0.00 0.00 3.41
2228 2241 7.418840 TGTTTTGTTACATGCATTTTCCATC 57.581 32.000 0.00 0.00 0.00 3.51
2229 2242 6.426328 TGTTTTGTTACATGCATTTTCCATCC 59.574 34.615 0.00 0.00 0.00 3.51
2230 2243 4.368874 TGTTACATGCATTTTCCATCCG 57.631 40.909 0.00 0.00 0.00 4.18
2241 2254 5.516339 GCATTTTCCATCCGTTGAATTAGTG 59.484 40.000 0.00 0.00 0.00 2.74
2262 2276 1.907807 GCAGGGATGGGTGCAACAA 60.908 57.895 3.06 0.00 39.98 2.83
2278 2292 3.067320 GCAACAACAAAAAGAGAGCCTCT 59.933 43.478 0.00 0.00 43.37 3.69
2308 2327 9.956720 CCATTTTACAAGGATTAAGATCACATC 57.043 33.333 0.00 0.00 33.77 3.06
2329 2348 6.886459 ACATCAAGGAAATATGTGCACTACTT 59.114 34.615 19.41 6.54 32.74 2.24
2331 2350 9.060347 CATCAAGGAAATATGTGCACTACTTAT 57.940 33.333 19.41 5.07 32.67 1.73
2332 2351 8.437360 TCAAGGAAATATGTGCACTACTTATG 57.563 34.615 19.41 6.55 31.96 1.90
2333 2352 8.046708 TCAAGGAAATATGTGCACTACTTATGT 58.953 33.333 19.41 5.37 31.96 2.29
2334 2353 7.792374 AGGAAATATGTGCACTACTTATGTG 57.208 36.000 19.41 0.00 38.36 3.21
2386 2405 8.629158 TGATAAAATAATACAAGTGCCATCACC 58.371 33.333 0.00 0.00 44.16 4.02
2430 2639 7.976175 TCATTGACTTGTGTGTATCTATCAGAC 59.024 37.037 0.00 0.00 0.00 3.51
2469 2678 5.565259 CGTAACAAAGCAAAGCACATCTAAG 59.435 40.000 0.00 0.00 0.00 2.18
2470 2679 5.520376 AACAAAGCAAAGCACATCTAAGT 57.480 34.783 0.00 0.00 0.00 2.24
2471 2680 6.633500 AACAAAGCAAAGCACATCTAAGTA 57.367 33.333 0.00 0.00 0.00 2.24
2472 2681 6.002062 ACAAAGCAAAGCACATCTAAGTAC 57.998 37.500 0.00 0.00 0.00 2.73
2473 2682 5.765182 ACAAAGCAAAGCACATCTAAGTACT 59.235 36.000 0.00 0.00 0.00 2.73
2474 2683 6.073003 ACAAAGCAAAGCACATCTAAGTACTC 60.073 38.462 0.00 0.00 0.00 2.59
2475 2684 4.508662 AGCAAAGCACATCTAAGTACTCC 58.491 43.478 0.00 0.00 0.00 3.85
2476 2685 3.623510 GCAAAGCACATCTAAGTACTCCC 59.376 47.826 0.00 0.00 0.00 4.30
2477 2686 4.624125 GCAAAGCACATCTAAGTACTCCCT 60.624 45.833 0.00 0.00 0.00 4.20
2478 2687 5.112686 CAAAGCACATCTAAGTACTCCCTC 58.887 45.833 0.00 0.00 0.00 4.30
2479 2688 3.301274 AGCACATCTAAGTACTCCCTCC 58.699 50.000 0.00 0.00 0.00 4.30
2480 2689 2.034812 GCACATCTAAGTACTCCCTCCG 59.965 54.545 0.00 0.00 0.00 4.63
2481 2690 3.288964 CACATCTAAGTACTCCCTCCGT 58.711 50.000 0.00 0.00 0.00 4.69
2482 2691 3.700038 CACATCTAAGTACTCCCTCCGTT 59.300 47.826 0.00 0.00 0.00 4.44
2483 2692 4.159879 CACATCTAAGTACTCCCTCCGTTT 59.840 45.833 0.00 0.00 0.00 3.60
2484 2693 4.401837 ACATCTAAGTACTCCCTCCGTTTC 59.598 45.833 0.00 0.00 0.00 2.78
2485 2694 4.038271 TCTAAGTACTCCCTCCGTTTCA 57.962 45.455 0.00 0.00 0.00 2.69
2486 2695 4.410099 TCTAAGTACTCCCTCCGTTTCAA 58.590 43.478 0.00 0.00 0.00 2.69
2487 2696 4.834496 TCTAAGTACTCCCTCCGTTTCAAA 59.166 41.667 0.00 0.00 0.00 2.69
2488 2697 4.635699 AAGTACTCCCTCCGTTTCAAAT 57.364 40.909 0.00 0.00 0.00 2.32
2489 2698 4.635699 AGTACTCCCTCCGTTTCAAATT 57.364 40.909 0.00 0.00 0.00 1.82
2490 2699 5.750352 AGTACTCCCTCCGTTTCAAATTA 57.250 39.130 0.00 0.00 0.00 1.40
2491 2700 5.485620 AGTACTCCCTCCGTTTCAAATTAC 58.514 41.667 0.00 0.00 0.00 1.89
2492 2701 4.635699 ACTCCCTCCGTTTCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
2493 2702 4.576879 ACTCCCTCCGTTTCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
2494 2703 3.592059 TCCCTCCGTTTCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
2495 2704 3.007182 TCCCTCCGTTTCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
2496 2705 3.370061 CCCTCCGTTTCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
2497 2706 3.060363 CCTCCGTTTCAAATTACTCGTCG 59.940 47.826 0.00 0.00 0.00 5.12
2498 2707 3.641648 TCCGTTTCAAATTACTCGTCGT 58.358 40.909 0.00 0.00 0.00 4.34
2499 2708 3.426191 TCCGTTTCAAATTACTCGTCGTG 59.574 43.478 0.00 0.00 0.00 4.35
2500 2709 3.422603 CCGTTTCAAATTACTCGTCGTGG 60.423 47.826 0.00 0.00 0.00 4.94
2501 2710 3.182972 CGTTTCAAATTACTCGTCGTGGT 59.817 43.478 0.00 0.00 0.00 4.16
2502 2711 4.318263 CGTTTCAAATTACTCGTCGTGGTT 60.318 41.667 0.00 0.00 0.00 3.67
2503 2712 5.504392 GTTTCAAATTACTCGTCGTGGTTT 58.496 37.500 0.00 0.00 0.00 3.27
2504 2713 5.738118 TTCAAATTACTCGTCGTGGTTTT 57.262 34.783 0.00 0.00 0.00 2.43
2505 2714 6.841443 TTCAAATTACTCGTCGTGGTTTTA 57.159 33.333 0.00 0.00 0.00 1.52
2506 2715 6.456447 TCAAATTACTCGTCGTGGTTTTAG 57.544 37.500 0.00 0.00 0.00 1.85
2507 2716 5.984926 TCAAATTACTCGTCGTGGTTTTAGT 59.015 36.000 0.00 0.00 0.00 2.24
2508 2717 6.479660 TCAAATTACTCGTCGTGGTTTTAGTT 59.520 34.615 0.00 0.00 0.00 2.24
2509 2718 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
2510 2719 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
2511 2720 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
2512 2721 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
2513 2722 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
2514 2723 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
2515 2724 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
2516 2725 7.011295 ACTCGTCGTGGTTTTAGTTCAAATTTA 59.989 33.333 0.00 0.00 0.00 1.40
2517 2726 7.692088 TCGTCGTGGTTTTAGTTCAAATTTAA 58.308 30.769 0.00 0.00 0.00 1.52
2518 2727 8.180267 TCGTCGTGGTTTTAGTTCAAATTTAAA 58.820 29.630 0.00 0.00 0.00 1.52
2519 2728 8.254470 CGTCGTGGTTTTAGTTCAAATTTAAAC 58.746 33.333 0.00 0.00 0.00 2.01
2520 2729 9.292846 GTCGTGGTTTTAGTTCAAATTTAAACT 57.707 29.630 11.45 11.45 39.07 2.66
2531 2740 9.292846 AGTTCAAATTTAAACTAAAACCACGAC 57.707 29.630 4.83 0.00 34.05 4.34
2532 2741 7.895582 TCAAATTTAAACTAAAACCACGACG 57.104 32.000 0.00 0.00 0.00 5.12
2533 2742 7.692088 TCAAATTTAAACTAAAACCACGACGA 58.308 30.769 0.00 0.00 0.00 4.20
2534 2743 7.639461 TCAAATTTAAACTAAAACCACGACGAC 59.361 33.333 0.00 0.00 0.00 4.34
2535 2744 6.849588 ATTTAAACTAAAACCACGACGACT 57.150 33.333 0.00 0.00 0.00 4.18
2536 2745 7.945033 ATTTAAACTAAAACCACGACGACTA 57.055 32.000 0.00 0.00 0.00 2.59
2537 2746 7.763172 TTTAAACTAAAACCACGACGACTAA 57.237 32.000 0.00 0.00 0.00 2.24
2538 2747 7.945033 TTAAACTAAAACCACGACGACTAAT 57.055 32.000 0.00 0.00 0.00 1.73
2539 2748 6.849588 AAACTAAAACCACGACGACTAATT 57.150 33.333 0.00 0.00 0.00 1.40
2540 2749 6.849588 AACTAAAACCACGACGACTAATTT 57.150 33.333 0.00 0.00 0.00 1.82
2541 2750 6.219302 ACTAAAACCACGACGACTAATTTG 57.781 37.500 0.00 0.00 0.00 2.32
2542 2751 4.477302 AAAACCACGACGACTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
2543 2752 3.389925 AACCACGACGACTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
2544 2753 3.389925 ACCACGACGACTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
2545 2754 3.062042 ACCACGACGACTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
2546 2755 2.091588 CCACGACGACTAATTTGGAACG 59.908 50.000 0.00 0.00 0.00 3.95
2547 2756 2.091588 CACGACGACTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
2548 2757 2.030007 ACGACGACTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
2549 2758 2.597305 CGACGACTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2550 2759 2.928116 GACGACTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2551 2760 2.277084 CGACTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2552 2761 2.093869 CGACTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2553 2762 3.532542 GACTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2584 2793 7.124901 TGGAATAAGATGCACTCTAAGAAGTCT 59.875 37.037 0.00 0.00 32.41 3.24
2608 2817 3.565307 AGTTCCCATTCAGTTGCTTCAA 58.435 40.909 0.00 0.00 0.00 2.69
2654 2905 5.416083 TCTCACGTGATTTAATCAATCGGT 58.584 37.500 20.40 8.77 44.07 4.69
2658 2909 8.030744 TCACGTGATTTAATCAATCGGTTTTA 57.969 30.769 15.76 0.00 44.07 1.52
2691 2943 1.024579 CATGTAAGGTGCCGGTGGTC 61.025 60.000 1.90 0.00 0.00 4.02
2753 3005 1.004560 CTCTCTGCCAAGACGCCAA 60.005 57.895 0.00 0.00 0.00 4.52
2756 3008 0.239347 CTCTGCCAAGACGCCAAAAG 59.761 55.000 0.00 0.00 0.00 2.27
2757 3009 1.172180 TCTGCCAAGACGCCAAAAGG 61.172 55.000 0.00 0.00 0.00 3.11
2758 3010 2.049156 GCCAAGACGCCAAAAGGC 60.049 61.111 0.00 0.00 34.71 4.35
2759 3011 2.650778 CCAAGACGCCAAAAGGCC 59.349 61.111 0.00 0.00 0.00 5.19
2760 3012 2.650778 CAAGACGCCAAAAGGCCC 59.349 61.111 0.00 0.00 0.00 5.80
2761 3013 2.600470 AAGACGCCAAAAGGCCCC 60.600 61.111 0.00 0.00 0.00 5.80
2762 3014 3.146828 AAGACGCCAAAAGGCCCCT 62.147 57.895 0.00 0.00 0.00 4.79
2763 3015 3.062466 GACGCCAAAAGGCCCCTC 61.062 66.667 0.00 0.00 0.00 4.30
2764 3016 3.860930 GACGCCAAAAGGCCCCTCA 62.861 63.158 0.00 0.00 0.00 3.86
2765 3017 3.064324 CGCCAAAAGGCCCCTCAG 61.064 66.667 0.00 0.00 0.00 3.35
2766 3018 2.440599 GCCAAAAGGCCCCTCAGA 59.559 61.111 0.00 0.00 0.00 3.27
2767 3019 1.228862 GCCAAAAGGCCCCTCAGAA 60.229 57.895 0.00 0.00 0.00 3.02
2768 3020 0.615827 GCCAAAAGGCCCCTCAGAAT 60.616 55.000 0.00 0.00 0.00 2.40
2769 3021 1.188863 CCAAAAGGCCCCTCAGAATG 58.811 55.000 0.00 0.00 37.54 2.67
2770 3022 1.550869 CCAAAAGGCCCCTCAGAATGT 60.551 52.381 0.00 0.00 37.40 2.71
2771 3023 2.250924 CAAAAGGCCCCTCAGAATGTT 58.749 47.619 0.00 0.00 37.40 2.71
2772 3024 2.634453 CAAAAGGCCCCTCAGAATGTTT 59.366 45.455 0.00 0.00 37.40 2.83
2773 3025 2.222227 AAGGCCCCTCAGAATGTTTC 57.778 50.000 0.00 0.00 37.40 2.78
2774 3026 1.075601 AGGCCCCTCAGAATGTTTCA 58.924 50.000 0.00 0.00 37.40 2.69
2775 3027 1.177401 GGCCCCTCAGAATGTTTCAC 58.823 55.000 0.00 0.00 37.40 3.18
2776 3028 1.177401 GCCCCTCAGAATGTTTCACC 58.823 55.000 0.00 0.00 37.40 4.02
2777 3029 1.272147 GCCCCTCAGAATGTTTCACCT 60.272 52.381 0.00 0.00 37.40 4.00
2778 3030 2.819348 GCCCCTCAGAATGTTTCACCTT 60.819 50.000 0.00 0.00 37.40 3.50
2779 3031 2.821969 CCCCTCAGAATGTTTCACCTTG 59.178 50.000 0.00 0.00 37.40 3.61
2780 3032 3.490348 CCCTCAGAATGTTTCACCTTGT 58.510 45.455 0.00 0.00 37.40 3.16
2781 3033 4.506625 CCCCTCAGAATGTTTCACCTTGTA 60.507 45.833 0.00 0.00 37.40 2.41
2782 3034 4.455877 CCCTCAGAATGTTTCACCTTGTAC 59.544 45.833 0.00 0.00 37.40 2.90
2783 3035 5.063204 CCTCAGAATGTTTCACCTTGTACA 58.937 41.667 0.00 0.00 37.40 2.90
2784 3036 5.180117 CCTCAGAATGTTTCACCTTGTACAG 59.820 44.000 0.00 0.00 37.40 2.74
2785 3037 5.063204 TCAGAATGTTTCACCTTGTACAGG 58.937 41.667 9.12 9.12 43.21 4.00
2794 3046 1.739067 CCTTGTACAGGTGCTAAGCC 58.261 55.000 4.10 0.00 37.99 4.35
2795 3047 1.279271 CCTTGTACAGGTGCTAAGCCT 59.721 52.381 4.10 0.00 37.99 4.58
2796 3048 2.290323 CCTTGTACAGGTGCTAAGCCTT 60.290 50.000 4.10 0.00 37.99 4.35
2797 3049 3.412386 CTTGTACAGGTGCTAAGCCTTT 58.588 45.455 0.00 0.00 33.31 3.11
2798 3050 3.053831 TGTACAGGTGCTAAGCCTTTC 57.946 47.619 0.00 0.00 33.31 2.62
2799 3051 2.370519 TGTACAGGTGCTAAGCCTTTCA 59.629 45.455 0.00 0.00 33.31 2.69
2800 3052 1.897560 ACAGGTGCTAAGCCTTTCAC 58.102 50.000 2.14 2.14 33.31 3.18
2801 3053 1.142870 ACAGGTGCTAAGCCTTTCACA 59.857 47.619 10.37 0.00 33.31 3.58
2802 3054 2.224867 ACAGGTGCTAAGCCTTTCACAT 60.225 45.455 10.37 2.50 33.31 3.21
2803 3055 3.009033 ACAGGTGCTAAGCCTTTCACATA 59.991 43.478 10.37 0.00 33.31 2.29
2804 3056 3.624861 CAGGTGCTAAGCCTTTCACATAG 59.375 47.826 10.37 0.00 33.31 2.23
2805 3057 2.945668 GGTGCTAAGCCTTTCACATAGG 59.054 50.000 10.37 0.00 35.80 2.57
2836 3088 9.995003 AAATTTGATGTGGCAAGTTATTTAAGA 57.005 25.926 0.00 0.00 29.18 2.10
2837 3089 9.643693 AATTTGATGTGGCAAGTTATTTAAGAG 57.356 29.630 0.00 0.00 0.00 2.85
2838 3090 6.757897 TGATGTGGCAAGTTATTTAAGAGG 57.242 37.500 0.00 0.00 0.00 3.69
2839 3091 6.480763 TGATGTGGCAAGTTATTTAAGAGGA 58.519 36.000 0.00 0.00 0.00 3.71
2840 3092 6.599244 TGATGTGGCAAGTTATTTAAGAGGAG 59.401 38.462 0.00 0.00 0.00 3.69
2841 3093 6.121776 TGTGGCAAGTTATTTAAGAGGAGA 57.878 37.500 0.00 0.00 0.00 3.71
2842 3094 6.173339 TGTGGCAAGTTATTTAAGAGGAGAG 58.827 40.000 0.00 0.00 0.00 3.20
2843 3095 6.013725 TGTGGCAAGTTATTTAAGAGGAGAGA 60.014 38.462 0.00 0.00 0.00 3.10
2844 3096 6.536941 GTGGCAAGTTATTTAAGAGGAGAGAG 59.463 42.308 0.00 0.00 0.00 3.20
2845 3097 6.440647 TGGCAAGTTATTTAAGAGGAGAGAGA 59.559 38.462 0.00 0.00 0.00 3.10
2846 3098 7.126421 TGGCAAGTTATTTAAGAGGAGAGAGAT 59.874 37.037 0.00 0.00 0.00 2.75
2847 3099 7.440856 GGCAAGTTATTTAAGAGGAGAGAGATG 59.559 40.741 0.00 0.00 0.00 2.90
2848 3100 8.200792 GCAAGTTATTTAAGAGGAGAGAGATGA 58.799 37.037 0.00 0.00 0.00 2.92
2849 3101 9.748708 CAAGTTATTTAAGAGGAGAGAGATGAG 57.251 37.037 0.00 0.00 0.00 2.90
2850 3102 9.487442 AAGTTATTTAAGAGGAGAGAGATGAGT 57.513 33.333 0.00 0.00 0.00 3.41
2851 3103 8.912988 AGTTATTTAAGAGGAGAGAGATGAGTG 58.087 37.037 0.00 0.00 0.00 3.51
2852 3104 8.691797 GTTATTTAAGAGGAGAGAGATGAGTGT 58.308 37.037 0.00 0.00 0.00 3.55
2853 3105 6.522625 TTTAAGAGGAGAGAGATGAGTGTG 57.477 41.667 0.00 0.00 0.00 3.82
2854 3106 3.017048 AGAGGAGAGAGATGAGTGTGG 57.983 52.381 0.00 0.00 0.00 4.17
2855 3107 2.311542 AGAGGAGAGAGATGAGTGTGGT 59.688 50.000 0.00 0.00 0.00 4.16
2856 3108 2.426738 GAGGAGAGAGATGAGTGTGGTG 59.573 54.545 0.00 0.00 0.00 4.17
2857 3109 2.042297 AGGAGAGAGATGAGTGTGGTGA 59.958 50.000 0.00 0.00 0.00 4.02
2858 3110 2.165437 GGAGAGAGATGAGTGTGGTGAC 59.835 54.545 0.00 0.00 0.00 3.67
2859 3111 2.165437 GAGAGAGATGAGTGTGGTGACC 59.835 54.545 0.00 0.00 0.00 4.02
2860 3112 1.205893 GAGAGATGAGTGTGGTGACCC 59.794 57.143 0.00 0.00 0.00 4.46
2861 3113 0.250513 GAGATGAGTGTGGTGACCCC 59.749 60.000 0.00 0.00 0.00 4.95
2862 3114 0.473694 AGATGAGTGTGGTGACCCCA 60.474 55.000 0.00 0.00 42.51 4.96
2863 3115 0.036010 GATGAGTGTGGTGACCCCAG 60.036 60.000 0.00 0.00 46.45 4.45
2864 3116 1.492133 ATGAGTGTGGTGACCCCAGG 61.492 60.000 0.00 0.00 46.45 4.45
2865 3117 1.841556 GAGTGTGGTGACCCCAGGA 60.842 63.158 0.00 0.00 46.45 3.86
2866 3118 1.385347 AGTGTGGTGACCCCAGGAA 60.385 57.895 0.00 0.00 46.45 3.36
2867 3119 1.073199 GTGTGGTGACCCCAGGAAG 59.927 63.158 0.00 0.00 46.45 3.46
2868 3120 1.074090 TGTGGTGACCCCAGGAAGA 60.074 57.895 0.00 0.00 46.45 2.87
2869 3121 0.696143 TGTGGTGACCCCAGGAAGAA 60.696 55.000 0.00 0.00 46.45 2.52
2870 3122 0.476771 GTGGTGACCCCAGGAAGAAA 59.523 55.000 0.00 0.00 46.45 2.52
2871 3123 0.476771 TGGTGACCCCAGGAAGAAAC 59.523 55.000 0.00 0.00 38.72 2.78
2872 3124 0.476771 GGTGACCCCAGGAAGAAACA 59.523 55.000 0.00 0.00 0.00 2.83
2873 3125 1.545651 GGTGACCCCAGGAAGAAACAG 60.546 57.143 0.00 0.00 0.00 3.16
2874 3126 1.143073 GTGACCCCAGGAAGAAACAGT 59.857 52.381 0.00 0.00 0.00 3.55
2875 3127 1.142870 TGACCCCAGGAAGAAACAGTG 59.857 52.381 0.00 0.00 0.00 3.66
2876 3128 0.178990 ACCCCAGGAAGAAACAGTGC 60.179 55.000 0.00 0.00 0.00 4.40
2877 3129 0.111253 CCCCAGGAAGAAACAGTGCT 59.889 55.000 0.00 0.00 0.00 4.40
2878 3130 1.351017 CCCCAGGAAGAAACAGTGCTA 59.649 52.381 0.00 0.00 0.00 3.49
2879 3131 2.224769 CCCCAGGAAGAAACAGTGCTAA 60.225 50.000 0.00 0.00 0.00 3.09
2880 3132 3.486383 CCCAGGAAGAAACAGTGCTAAA 58.514 45.455 0.00 0.00 0.00 1.85
2881 3133 3.253432 CCCAGGAAGAAACAGTGCTAAAC 59.747 47.826 0.00 0.00 0.00 2.01
2882 3134 3.882888 CCAGGAAGAAACAGTGCTAAACA 59.117 43.478 0.00 0.00 0.00 2.83
2894 3146 4.842139 GTGCTAAACACGTGAATCTAGG 57.158 45.455 25.01 6.41 40.07 3.02
2895 3147 3.062234 GTGCTAAACACGTGAATCTAGGC 59.938 47.826 25.01 15.76 40.07 3.93
2896 3148 3.259064 GCTAAACACGTGAATCTAGGCA 58.741 45.455 25.01 0.00 0.00 4.75
2897 3149 3.682858 GCTAAACACGTGAATCTAGGCAA 59.317 43.478 25.01 0.00 0.00 4.52
2898 3150 4.153475 GCTAAACACGTGAATCTAGGCAAA 59.847 41.667 25.01 0.00 0.00 3.68
2899 3151 5.334569 GCTAAACACGTGAATCTAGGCAAAA 60.335 40.000 25.01 0.00 0.00 2.44
2900 3152 4.483476 AACACGTGAATCTAGGCAAAAC 57.517 40.909 25.01 0.00 0.00 2.43
2901 3153 3.472652 ACACGTGAATCTAGGCAAAACA 58.527 40.909 25.01 0.00 0.00 2.83
2902 3154 4.072131 ACACGTGAATCTAGGCAAAACAT 58.928 39.130 25.01 0.00 0.00 2.71
2903 3155 4.518970 ACACGTGAATCTAGGCAAAACATT 59.481 37.500 25.01 0.00 0.00 2.71
2904 3156 5.009610 ACACGTGAATCTAGGCAAAACATTT 59.990 36.000 25.01 0.00 0.00 2.32
2905 3157 6.205853 ACACGTGAATCTAGGCAAAACATTTA 59.794 34.615 25.01 0.00 0.00 1.40
2906 3158 7.081349 CACGTGAATCTAGGCAAAACATTTAA 58.919 34.615 10.90 0.00 0.00 1.52
2907 3159 7.593273 CACGTGAATCTAGGCAAAACATTTAAA 59.407 33.333 10.90 0.00 0.00 1.52
2908 3160 7.807907 ACGTGAATCTAGGCAAAACATTTAAAG 59.192 33.333 0.00 0.00 0.00 1.85
2909 3161 7.273381 CGTGAATCTAGGCAAAACATTTAAAGG 59.727 37.037 0.00 0.00 0.00 3.11
2910 3162 8.303876 GTGAATCTAGGCAAAACATTTAAAGGA 58.696 33.333 6.90 0.00 0.00 3.36
2911 3163 8.865090 TGAATCTAGGCAAAACATTTAAAGGAA 58.135 29.630 6.90 0.00 0.00 3.36
2912 3164 9.358872 GAATCTAGGCAAAACATTTAAAGGAAG 57.641 33.333 6.90 0.00 0.00 3.46
2913 3165 7.227049 TCTAGGCAAAACATTTAAAGGAAGG 57.773 36.000 6.90 0.00 0.00 3.46
2914 3166 7.007723 TCTAGGCAAAACATTTAAAGGAAGGA 58.992 34.615 6.90 0.00 0.00 3.36
2915 3167 6.493189 AGGCAAAACATTTAAAGGAAGGAA 57.507 33.333 6.90 0.00 0.00 3.36
2916 3168 6.524734 AGGCAAAACATTTAAAGGAAGGAAG 58.475 36.000 6.90 0.00 0.00 3.46
2917 3169 5.179368 GGCAAAACATTTAAAGGAAGGAAGC 59.821 40.000 6.90 3.11 0.00 3.86
2918 3170 5.179368 GCAAAACATTTAAAGGAAGGAAGCC 59.821 40.000 6.90 0.00 0.00 4.35
2919 3171 5.483685 AAACATTTAAAGGAAGGAAGCCC 57.516 39.130 6.90 0.00 0.00 5.19
2920 3172 4.126520 ACATTTAAAGGAAGGAAGCCCA 57.873 40.909 6.90 0.00 33.88 5.36
2921 3173 3.832490 ACATTTAAAGGAAGGAAGCCCAC 59.168 43.478 6.90 0.00 33.88 4.61
2922 3174 2.597578 TTAAAGGAAGGAAGCCCACC 57.402 50.000 0.00 0.00 33.88 4.61
2923 3175 1.451449 TAAAGGAAGGAAGCCCACCA 58.549 50.000 0.00 0.00 34.91 4.17
2924 3176 0.560688 AAAGGAAGGAAGCCCACCAA 59.439 50.000 0.00 0.00 34.91 3.67
2925 3177 0.786435 AAGGAAGGAAGCCCACCAAT 59.214 50.000 0.00 0.00 34.91 3.16
2926 3178 1.681229 AGGAAGGAAGCCCACCAATA 58.319 50.000 0.00 0.00 34.91 1.90
2927 3179 1.285078 AGGAAGGAAGCCCACCAATAC 59.715 52.381 0.00 0.00 34.91 1.89
2928 3180 1.005450 GGAAGGAAGCCCACCAATACA 59.995 52.381 0.00 0.00 33.45 2.29
2929 3181 2.358195 GGAAGGAAGCCCACCAATACAT 60.358 50.000 0.00 0.00 33.45 2.29
2930 3182 2.442236 AGGAAGCCCACCAATACATG 57.558 50.000 0.00 0.00 33.88 3.21
2931 3183 1.922447 AGGAAGCCCACCAATACATGA 59.078 47.619 0.00 0.00 33.88 3.07
2932 3184 2.311542 AGGAAGCCCACCAATACATGAA 59.688 45.455 0.00 0.00 33.88 2.57
2933 3185 2.689983 GGAAGCCCACCAATACATGAAG 59.310 50.000 0.00 0.00 0.00 3.02
2934 3186 1.767759 AGCCCACCAATACATGAAGC 58.232 50.000 0.00 0.00 0.00 3.86
2935 3187 1.285962 AGCCCACCAATACATGAAGCT 59.714 47.619 0.00 0.00 0.00 3.74
2936 3188 2.102578 GCCCACCAATACATGAAGCTT 58.897 47.619 0.00 0.00 0.00 3.74
2937 3189 2.497273 GCCCACCAATACATGAAGCTTT 59.503 45.455 0.00 0.00 0.00 3.51
2938 3190 3.699038 GCCCACCAATACATGAAGCTTTA 59.301 43.478 0.00 0.00 0.00 1.85
2939 3191 4.202050 GCCCACCAATACATGAAGCTTTAG 60.202 45.833 0.00 0.00 0.00 1.85
2940 3192 4.949856 CCCACCAATACATGAAGCTTTAGT 59.050 41.667 0.00 2.41 0.00 2.24
2941 3193 5.418840 CCCACCAATACATGAAGCTTTAGTT 59.581 40.000 0.00 0.00 0.00 2.24
2942 3194 6.324819 CCACCAATACATGAAGCTTTAGTTG 58.675 40.000 0.00 0.00 0.00 3.16
2943 3195 5.801947 CACCAATACATGAAGCTTTAGTTGC 59.198 40.000 0.00 0.00 0.00 4.17
2944 3196 5.711976 ACCAATACATGAAGCTTTAGTTGCT 59.288 36.000 0.00 0.00 43.32 3.91
2945 3197 6.884295 ACCAATACATGAAGCTTTAGTTGCTA 59.116 34.615 0.00 0.00 40.22 3.49
2946 3198 7.393234 ACCAATACATGAAGCTTTAGTTGCTAA 59.607 33.333 0.00 0.00 40.22 3.09
2947 3199 8.243426 CCAATACATGAAGCTTTAGTTGCTAAA 58.757 33.333 0.00 2.01 40.22 1.85
2948 3200 9.793252 CAATACATGAAGCTTTAGTTGCTAAAT 57.207 29.630 0.00 0.00 40.22 1.40
2950 3202 7.452880 ACATGAAGCTTTAGTTGCTAAATCA 57.547 32.000 0.00 4.50 40.22 2.57
2951 3203 8.059798 ACATGAAGCTTTAGTTGCTAAATCAT 57.940 30.769 0.00 8.95 40.22 2.45
2952 3204 8.526147 ACATGAAGCTTTAGTTGCTAAATCATT 58.474 29.630 0.00 4.41 40.22 2.57
2974 3226 8.458843 TCATTAAATGAAGTAAGCTTAGCAACC 58.541 33.333 6.38 0.00 36.11 3.77
2975 3227 7.753309 TTAAATGAAGTAAGCTTAGCAACCA 57.247 32.000 6.38 1.78 34.61 3.67
2976 3228 6.840780 AAATGAAGTAAGCTTAGCAACCAT 57.159 33.333 6.38 4.02 34.61 3.55
2977 3229 7.938140 AAATGAAGTAAGCTTAGCAACCATA 57.062 32.000 6.38 0.00 34.61 2.74
2978 3230 7.938140 AATGAAGTAAGCTTAGCAACCATAA 57.062 32.000 6.38 0.00 34.61 1.90
2979 3231 6.985188 TGAAGTAAGCTTAGCAACCATAAG 57.015 37.500 6.38 0.00 34.61 1.73
2988 3240 2.369394 AGCAACCATAAGCTAAGCACC 58.631 47.619 0.00 0.00 39.78 5.01
2989 3241 2.025887 AGCAACCATAAGCTAAGCACCT 60.026 45.455 0.00 0.00 39.78 4.00
2990 3242 3.199946 AGCAACCATAAGCTAAGCACCTA 59.800 43.478 0.00 0.00 39.78 3.08
2991 3243 4.137543 GCAACCATAAGCTAAGCACCTAT 58.862 43.478 0.00 0.00 0.00 2.57
2992 3244 4.023707 GCAACCATAAGCTAAGCACCTATG 60.024 45.833 0.00 0.00 0.00 2.23
3009 3261 6.500589 ACCTATGCATTGGTGAGTATAGTT 57.499 37.500 28.63 3.15 34.63 2.24
3010 3262 6.291377 ACCTATGCATTGGTGAGTATAGTTG 58.709 40.000 28.63 1.90 34.63 3.16
3011 3263 5.180117 CCTATGCATTGGTGAGTATAGTTGC 59.820 44.000 17.91 0.00 0.00 4.17
3012 3264 4.220693 TGCATTGGTGAGTATAGTTGCT 57.779 40.909 0.00 0.00 0.00 3.91
3013 3265 5.351948 TGCATTGGTGAGTATAGTTGCTA 57.648 39.130 0.00 0.00 0.00 3.49
3014 3266 5.739959 TGCATTGGTGAGTATAGTTGCTAA 58.260 37.500 0.00 0.00 0.00 3.09
3015 3267 5.817296 TGCATTGGTGAGTATAGTTGCTAAG 59.183 40.000 0.00 0.00 0.00 2.18
3016 3268 5.277538 GCATTGGTGAGTATAGTTGCTAAGC 60.278 44.000 0.00 0.00 0.00 3.09
3017 3269 5.677319 TTGGTGAGTATAGTTGCTAAGCT 57.323 39.130 0.00 0.00 0.00 3.74
3018 3270 6.785337 TTGGTGAGTATAGTTGCTAAGCTA 57.215 37.500 0.00 0.00 0.00 3.32
3019 3271 6.978674 TGGTGAGTATAGTTGCTAAGCTAT 57.021 37.500 0.00 0.00 0.00 2.97
3020 3272 7.361457 TGGTGAGTATAGTTGCTAAGCTATT 57.639 36.000 0.00 0.00 0.00 1.73
3021 3273 7.792032 TGGTGAGTATAGTTGCTAAGCTATTT 58.208 34.615 0.00 0.00 0.00 1.40
3022 3274 8.920174 TGGTGAGTATAGTTGCTAAGCTATTTA 58.080 33.333 0.00 0.00 0.00 1.40
3023 3275 9.760077 GGTGAGTATAGTTGCTAAGCTATTTAA 57.240 33.333 0.00 0.00 0.00 1.52
3028 3280 9.813080 GTATAGTTGCTAAGCTATTTAATGTGC 57.187 33.333 0.00 0.00 0.00 4.57
3029 3281 8.682936 ATAGTTGCTAAGCTATTTAATGTGCT 57.317 30.769 0.00 2.44 37.37 4.40
3030 3282 7.396540 AGTTGCTAAGCTATTTAATGTGCTT 57.603 32.000 18.26 18.26 45.94 3.91
3031 3283 8.506168 AGTTGCTAAGCTATTTAATGTGCTTA 57.494 30.769 18.45 18.45 44.08 3.09
3049 3301 3.462021 CTTAGCACCTCATCTAAGCACC 58.538 50.000 0.00 0.00 36.48 5.01
3050 3302 0.543749 AGCACCTCATCTAAGCACCC 59.456 55.000 0.00 0.00 0.00 4.61
3051 3303 0.253044 GCACCTCATCTAAGCACCCA 59.747 55.000 0.00 0.00 0.00 4.51
3052 3304 1.133976 GCACCTCATCTAAGCACCCAT 60.134 52.381 0.00 0.00 0.00 4.00
3053 3305 2.569059 CACCTCATCTAAGCACCCATG 58.431 52.381 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 5.277825 CGTCTGGTTTGAGATGATAGTCTC 58.722 45.833 0.00 0.00 43.90 3.36
22 23 4.070552 GCTTGGCGTCCTCCGTCT 62.071 66.667 0.00 0.00 43.10 4.18
64 65 4.111016 CGCGTGTCGAGGGTAGCA 62.111 66.667 0.00 0.00 41.67 3.49
219 221 5.640732 CATTTACATGCAGGTCCTTACAAC 58.359 41.667 7.56 0.00 0.00 3.32
250 252 6.433716 TGTTATTTCCTGAAATCACATGCAGA 59.566 34.615 13.05 0.00 38.94 4.26
259 261 6.515272 TGCTCCTTGTTATTTCCTGAAATC 57.485 37.500 8.32 0.00 40.99 2.17
277 279 3.050275 GTCAGCGGTGGTTGCTCC 61.050 66.667 15.67 0.00 41.72 4.70
320 322 5.824097 CACCATCCACATTCATCTTCACATA 59.176 40.000 0.00 0.00 0.00 2.29
359 361 0.533032 GCTAAAGCTCCACGGTCTCT 59.467 55.000 0.00 0.00 38.21 3.10
397 399 7.930865 GCTGAGTCATCAAGATAATTACCTCTT 59.069 37.037 0.00 0.00 34.23 2.85
414 416 6.328672 ACCCTCAAAGATAATAGCTGAGTCAT 59.671 38.462 0.00 0.00 33.21 3.06
517 519 1.638388 AATCTGATGCCACGCACACG 61.638 55.000 0.00 0.00 43.04 4.49
541 543 6.696148 CAGGTTGTATATTCGTCACTACTTCC 59.304 42.308 0.00 0.00 0.00 3.46
563 565 0.323629 TACCGGCAGGAAACTTCAGG 59.676 55.000 10.86 0.00 43.98 3.86
741 746 4.019860 ACCACATAGGGATACAGATGATGC 60.020 45.833 0.00 0.00 43.89 3.91
825 830 6.524586 GTGTTTTATGCAAATGTAGACAGAGC 59.475 38.462 0.00 0.00 0.00 4.09
889 894 5.221028 CCAAGGCTGCGATTGTAATAATTCA 60.221 40.000 13.09 0.00 0.00 2.57
930 935 0.531974 TTCAGGAAAGTGCGCGTCTT 60.532 50.000 8.43 10.41 0.00 3.01
1096 1105 4.603946 GGTATGAGGACCGCCGCC 62.604 72.222 0.00 0.00 39.96 6.13
1228 1237 2.378634 CCATCGCCTCCCCTCCTTT 61.379 63.158 0.00 0.00 0.00 3.11
1267 1276 1.771255 AGGAAGAACAAGCACCTCACT 59.229 47.619 0.00 0.00 0.00 3.41
1294 1303 2.671396 CGGACAAATCGTAACAGGAAGG 59.329 50.000 0.00 0.00 0.00 3.46
1295 1304 3.122948 CACGGACAAATCGTAACAGGAAG 59.877 47.826 0.00 0.00 38.94 3.46
1296 1305 3.061322 CACGGACAAATCGTAACAGGAA 58.939 45.455 0.00 0.00 38.94 3.36
1354 1363 0.179089 CTCCTCCTTCACCTGCGATG 60.179 60.000 0.00 0.00 0.00 3.84
1366 1375 1.965754 GCACCTCGCAATCTCCTCCT 61.966 60.000 0.00 0.00 41.79 3.69
1478 1487 3.967335 GCTATCTCCGCCGCGAGT 61.967 66.667 15.93 0.00 0.00 4.18
1507 1516 3.434319 CCGTCCATGTGGTGCAGC 61.434 66.667 9.47 9.47 36.34 5.25
1697 1706 1.078497 TACAGCATCCACCAAGCCG 60.078 57.895 0.00 0.00 0.00 5.52
1703 1712 2.464459 GCGCACTACAGCATCCACC 61.464 63.158 0.30 0.00 0.00 4.61
1736 1745 0.741574 ATGCGACGATGGCGGTTTTA 60.742 50.000 0.00 0.00 43.17 1.52
1806 1815 0.103937 CCGATCCTCTCCAGCTGAAC 59.896 60.000 17.39 0.00 0.00 3.18
1925 1934 2.971598 CGATGCCACTTCCCCTGGT 61.972 63.158 0.00 0.00 0.00 4.00
2012 2021 2.065899 TGCCATAATTCCTTTCCCCG 57.934 50.000 0.00 0.00 0.00 5.73
2168 2178 5.483231 TCCATAAAATTGCTGACATTCCCAA 59.517 36.000 0.00 0.00 0.00 4.12
2199 2212 8.341173 GGAAAATGCATGTAACAAAACAAATCA 58.659 29.630 0.00 0.00 32.02 2.57
2218 2231 6.851609 TCACTAATTCAACGGATGGAAAATG 58.148 36.000 0.00 0.00 0.00 2.32
2219 2232 7.483307 CATCACTAATTCAACGGATGGAAAAT 58.517 34.615 0.00 0.00 0.00 1.82
2220 2233 6.624861 GCATCACTAATTCAACGGATGGAAAA 60.625 38.462 0.00 0.00 34.28 2.29
2221 2234 5.163663 GCATCACTAATTCAACGGATGGAAA 60.164 40.000 0.00 0.00 34.28 3.13
2222 2235 4.335315 GCATCACTAATTCAACGGATGGAA 59.665 41.667 0.00 0.00 34.28 3.53
2223 2236 3.876914 GCATCACTAATTCAACGGATGGA 59.123 43.478 0.00 0.00 34.28 3.41
2224 2237 3.627123 TGCATCACTAATTCAACGGATGG 59.373 43.478 0.00 0.00 34.28 3.51
2225 2238 4.260907 CCTGCATCACTAATTCAACGGATG 60.261 45.833 0.00 0.00 36.20 3.51
2226 2239 3.879295 CCTGCATCACTAATTCAACGGAT 59.121 43.478 0.00 0.00 0.00 4.18
2227 2240 3.270027 CCTGCATCACTAATTCAACGGA 58.730 45.455 0.00 0.00 0.00 4.69
2228 2241 2.355756 CCCTGCATCACTAATTCAACGG 59.644 50.000 0.00 0.00 0.00 4.44
2229 2242 3.270027 TCCCTGCATCACTAATTCAACG 58.730 45.455 0.00 0.00 0.00 4.10
2230 2243 4.037208 CCATCCCTGCATCACTAATTCAAC 59.963 45.833 0.00 0.00 0.00 3.18
2241 2254 1.380246 TTGCACCCATCCCTGCATC 60.380 57.895 0.00 0.00 42.86 3.91
2305 2319 6.932356 AGTAGTGCACATATTTCCTTGATG 57.068 37.500 21.04 0.00 0.00 3.07
2308 2327 8.124823 CACATAAGTAGTGCACATATTTCCTTG 58.875 37.037 21.04 7.70 0.00 3.61
2329 2348 8.442632 AGTACTCGTAATTAGTAGTGCACATA 57.557 34.615 21.04 5.97 32.96 2.29
2331 2350 6.748333 AGTACTCGTAATTAGTAGTGCACA 57.252 37.500 21.04 1.84 32.96 4.57
2332 2351 7.375544 GCTTAGTACTCGTAATTAGTAGTGCAC 59.624 40.741 9.40 9.40 35.31 4.57
2333 2352 7.281774 AGCTTAGTACTCGTAATTAGTAGTGCA 59.718 37.037 0.00 0.00 35.31 4.57
2334 2353 7.638134 AGCTTAGTACTCGTAATTAGTAGTGC 58.362 38.462 0.00 7.99 35.31 4.40
2335 2354 9.435802 CAAGCTTAGTACTCGTAATTAGTAGTG 57.564 37.037 0.00 0.00 35.31 2.74
2336 2355 9.388506 TCAAGCTTAGTACTCGTAATTAGTAGT 57.611 33.333 0.00 5.29 37.04 2.73
2364 2383 5.957774 AGGGTGATGGCACTTGTATTATTTT 59.042 36.000 0.00 0.00 44.52 1.82
2386 2405 5.187576 TCAATGAAAAATAGGAGGCCAAAGG 59.812 40.000 5.01 0.00 0.00 3.11
2430 2639 3.395639 TGTTACGGTTTCTAAGGCACTG 58.604 45.455 0.00 0.00 40.86 3.66
2469 2678 5.485620 AGTAATTTGAAACGGAGGGAGTAC 58.514 41.667 0.00 0.00 0.00 2.73
2470 2679 5.622914 CGAGTAATTTGAAACGGAGGGAGTA 60.623 44.000 0.00 0.00 0.00 2.59
2471 2680 4.576879 GAGTAATTTGAAACGGAGGGAGT 58.423 43.478 0.00 0.00 0.00 3.85
2472 2681 3.617263 CGAGTAATTTGAAACGGAGGGAG 59.383 47.826 0.00 0.00 0.00 4.30
2473 2682 3.007182 ACGAGTAATTTGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
2474 2683 3.332034 ACGAGTAATTTGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
2475 2684 3.060363 CGACGAGTAATTTGAAACGGAGG 59.940 47.826 0.00 0.00 0.00 4.30
2476 2685 3.671928 ACGACGAGTAATTTGAAACGGAG 59.328 43.478 0.00 0.00 0.00 4.63
2477 2686 3.426191 CACGACGAGTAATTTGAAACGGA 59.574 43.478 0.00 0.00 0.00 4.69
2478 2687 3.422603 CCACGACGAGTAATTTGAAACGG 60.423 47.826 0.00 0.00 0.00 4.44
2479 2688 3.182972 ACCACGACGAGTAATTTGAAACG 59.817 43.478 0.00 0.00 0.00 3.60
2480 2689 4.720530 ACCACGACGAGTAATTTGAAAC 57.279 40.909 0.00 0.00 0.00 2.78
2481 2690 5.738118 AAACCACGACGAGTAATTTGAAA 57.262 34.783 0.00 0.00 0.00 2.69
2482 2691 5.738118 AAAACCACGACGAGTAATTTGAA 57.262 34.783 0.00 0.00 0.00 2.69
2483 2692 5.984926 ACTAAAACCACGACGAGTAATTTGA 59.015 36.000 0.00 0.00 0.00 2.69
2484 2693 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
2485 2694 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
2486 2695 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
2487 2696 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
2488 2697 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
2489 2698 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
2490 2699 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
2491 2700 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
2492 2701 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
2493 2702 7.895582 TTAAATTTGAACTAAAACCACGACG 57.104 32.000 0.00 0.00 0.00 5.12
2494 2703 9.292846 AGTTTAAATTTGAACTAAAACCACGAC 57.707 29.630 22.70 0.00 35.55 4.34
2505 2714 9.292846 GTCGTGGTTTTAGTTTAAATTTGAACT 57.707 29.630 25.84 25.84 39.80 3.01
2506 2715 8.254470 CGTCGTGGTTTTAGTTTAAATTTGAAC 58.746 33.333 15.93 15.93 0.00 3.18
2507 2716 8.180267 TCGTCGTGGTTTTAGTTTAAATTTGAA 58.820 29.630 0.00 0.00 0.00 2.69
2508 2717 7.639461 GTCGTCGTGGTTTTAGTTTAAATTTGA 59.361 33.333 0.00 0.00 0.00 2.69
2509 2718 7.641020 AGTCGTCGTGGTTTTAGTTTAAATTTG 59.359 33.333 0.00 0.00 0.00 2.32
2510 2719 7.696755 AGTCGTCGTGGTTTTAGTTTAAATTT 58.303 30.769 0.00 0.00 0.00 1.82
2511 2720 7.250445 AGTCGTCGTGGTTTTAGTTTAAATT 57.750 32.000 0.00 0.00 0.00 1.82
2512 2721 6.849588 AGTCGTCGTGGTTTTAGTTTAAAT 57.150 33.333 0.00 0.00 0.00 1.40
2513 2722 7.763172 TTAGTCGTCGTGGTTTTAGTTTAAA 57.237 32.000 0.00 0.00 0.00 1.52
2514 2723 7.945033 ATTAGTCGTCGTGGTTTTAGTTTAA 57.055 32.000 0.00 0.00 0.00 1.52
2515 2724 7.945033 AATTAGTCGTCGTGGTTTTAGTTTA 57.055 32.000 0.00 0.00 0.00 2.01
2516 2725 6.849588 AATTAGTCGTCGTGGTTTTAGTTT 57.150 33.333 0.00 0.00 0.00 2.66
2517 2726 6.293027 CCAAATTAGTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
2518 2727 5.178067 CCAAATTAGTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
2519 2728 5.406175 TCCAAATTAGTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
2520 2729 5.295950 TCCAAATTAGTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
2521 2730 4.128643 TCCAAATTAGTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
2522 2731 3.731089 TCCAAATTAGTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
2523 2732 3.389925 TCCAAATTAGTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2524 2733 3.062042 GTTCCAAATTAGTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
2525 2734 2.091588 CGTTCCAAATTAGTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
2526 2735 2.091588 CCGTTCCAAATTAGTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
2527 2736 2.030007 TCCGTTCCAAATTAGTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
2528 2737 2.597305 CTCCGTTCCAAATTAGTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2529 2738 2.928116 CCTCCGTTCCAAATTAGTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2530 2739 2.354403 CCCTCCGTTCCAAATTAGTCGT 60.354 50.000 0.00 0.00 0.00 4.34
2531 2740 2.093869 TCCCTCCGTTCCAAATTAGTCG 60.094 50.000 0.00 0.00 0.00 4.18
2532 2741 3.055312 ACTCCCTCCGTTCCAAATTAGTC 60.055 47.826 0.00 0.00 0.00 2.59
2533 2742 2.910977 ACTCCCTCCGTTCCAAATTAGT 59.089 45.455 0.00 0.00 0.00 2.24
2534 2743 3.629142 ACTCCCTCCGTTCCAAATTAG 57.371 47.619 0.00 0.00 0.00 1.73
2535 2744 6.239772 CCATATACTCCCTCCGTTCCAAATTA 60.240 42.308 0.00 0.00 0.00 1.40
2536 2745 5.456186 CCATATACTCCCTCCGTTCCAAATT 60.456 44.000 0.00 0.00 0.00 1.82
2537 2746 4.041691 CCATATACTCCCTCCGTTCCAAAT 59.958 45.833 0.00 0.00 0.00 2.32
2538 2747 3.389983 CCATATACTCCCTCCGTTCCAAA 59.610 47.826 0.00 0.00 0.00 3.28
2539 2748 2.969950 CCATATACTCCCTCCGTTCCAA 59.030 50.000 0.00 0.00 0.00 3.53
2540 2749 2.178325 TCCATATACTCCCTCCGTTCCA 59.822 50.000 0.00 0.00 0.00 3.53
2541 2750 2.885616 TCCATATACTCCCTCCGTTCC 58.114 52.381 0.00 0.00 0.00 3.62
2542 2751 6.436532 TCTTATTCCATATACTCCCTCCGTTC 59.563 42.308 0.00 0.00 0.00 3.95
2543 2752 6.320518 TCTTATTCCATATACTCCCTCCGTT 58.679 40.000 0.00 0.00 0.00 4.44
2544 2753 5.900437 TCTTATTCCATATACTCCCTCCGT 58.100 41.667 0.00 0.00 0.00 4.69
2545 2754 6.684111 GCATCTTATTCCATATACTCCCTCCG 60.684 46.154 0.00 0.00 0.00 4.63
2546 2755 6.156949 TGCATCTTATTCCATATACTCCCTCC 59.843 42.308 0.00 0.00 0.00 4.30
2547 2756 7.044798 GTGCATCTTATTCCATATACTCCCTC 58.955 42.308 0.00 0.00 0.00 4.30
2548 2757 6.732862 AGTGCATCTTATTCCATATACTCCCT 59.267 38.462 0.00 0.00 0.00 4.20
2549 2758 6.951971 AGTGCATCTTATTCCATATACTCCC 58.048 40.000 0.00 0.00 0.00 4.30
2550 2759 7.846066 AGAGTGCATCTTATTCCATATACTCC 58.154 38.462 0.00 0.00 32.99 3.85
2584 2793 3.228188 AGCAACTGAATGGGAACTTGA 57.772 42.857 0.00 0.00 0.00 3.02
2608 2817 3.062042 GGTTGTCTATTTGAACGACCGT 58.938 45.455 0.00 0.00 0.00 4.83
2610 2819 4.995487 AGAAGGTTGTCTATTTGAACGACC 59.005 41.667 4.10 4.10 0.00 4.79
2614 2823 5.465724 ACGTGAGAAGGTTGTCTATTTGAAC 59.534 40.000 0.00 0.00 0.00 3.18
2685 2937 5.419471 AGACTTCTACTGTTATGAGACCACC 59.581 44.000 0.00 0.00 0.00 4.61
2691 2943 7.543868 CCTGTTTCAGACTTCTACTGTTATGAG 59.456 40.741 0.00 0.00 36.81 2.90
2753 3005 2.158325 TGAAACATTCTGAGGGGCCTTT 60.158 45.455 0.84 0.00 0.00 3.11
2756 3008 1.177401 GTGAAACATTCTGAGGGGCC 58.823 55.000 0.00 0.00 36.32 5.80
2757 3009 1.177401 GGTGAAACATTCTGAGGGGC 58.823 55.000 0.00 0.00 39.98 5.80
2758 3010 2.821969 CAAGGTGAAACATTCTGAGGGG 59.178 50.000 0.00 0.00 39.78 4.79
2759 3011 3.490348 ACAAGGTGAAACATTCTGAGGG 58.510 45.455 0.00 0.00 39.78 4.30
2760 3012 5.063204 TGTACAAGGTGAAACATTCTGAGG 58.937 41.667 0.00 0.00 39.78 3.86
2761 3013 5.180117 CCTGTACAAGGTGAAACATTCTGAG 59.820 44.000 0.00 0.00 39.78 3.35
2762 3014 5.063204 CCTGTACAAGGTGAAACATTCTGA 58.937 41.667 0.00 0.00 39.78 3.27
2763 3015 5.362556 CCTGTACAAGGTGAAACATTCTG 57.637 43.478 0.00 0.00 39.78 3.02
2776 3028 2.770164 AGGCTTAGCACCTGTACAAG 57.230 50.000 6.53 0.00 35.72 3.16
2777 3029 3.181449 TGAAAGGCTTAGCACCTGTACAA 60.181 43.478 6.53 0.00 37.67 2.41
2778 3030 2.370519 TGAAAGGCTTAGCACCTGTACA 59.629 45.455 6.53 0.00 37.67 2.90
2779 3031 2.742589 GTGAAAGGCTTAGCACCTGTAC 59.257 50.000 17.56 0.00 37.67 2.90
2780 3032 2.370519 TGTGAAAGGCTTAGCACCTGTA 59.629 45.455 22.53 8.13 37.67 2.74
2781 3033 1.142870 TGTGAAAGGCTTAGCACCTGT 59.857 47.619 22.53 0.00 37.67 4.00
2782 3034 1.896220 TGTGAAAGGCTTAGCACCTG 58.104 50.000 22.53 0.00 37.67 4.00
2783 3035 2.887151 ATGTGAAAGGCTTAGCACCT 57.113 45.000 22.53 14.45 40.02 4.00
2784 3036 2.945668 CCTATGTGAAAGGCTTAGCACC 59.054 50.000 22.53 10.89 0.00 5.01
2810 3062 9.995003 TCTTAAATAACTTGCCACATCAAATTT 57.005 25.926 0.00 0.00 0.00 1.82
2811 3063 9.643693 CTCTTAAATAACTTGCCACATCAAATT 57.356 29.630 0.00 0.00 0.00 1.82
2812 3064 8.253113 CCTCTTAAATAACTTGCCACATCAAAT 58.747 33.333 0.00 0.00 0.00 2.32
2813 3065 7.450014 TCCTCTTAAATAACTTGCCACATCAAA 59.550 33.333 0.00 0.00 0.00 2.69
2814 3066 6.945435 TCCTCTTAAATAACTTGCCACATCAA 59.055 34.615 0.00 0.00 0.00 2.57
2815 3067 6.480763 TCCTCTTAAATAACTTGCCACATCA 58.519 36.000 0.00 0.00 0.00 3.07
2816 3068 6.823689 TCTCCTCTTAAATAACTTGCCACATC 59.176 38.462 0.00 0.00 0.00 3.06
2817 3069 6.721318 TCTCCTCTTAAATAACTTGCCACAT 58.279 36.000 0.00 0.00 0.00 3.21
2818 3070 6.013725 TCTCTCCTCTTAAATAACTTGCCACA 60.014 38.462 0.00 0.00 0.00 4.17
2819 3071 6.407202 TCTCTCCTCTTAAATAACTTGCCAC 58.593 40.000 0.00 0.00 0.00 5.01
2820 3072 6.440647 TCTCTCTCCTCTTAAATAACTTGCCA 59.559 38.462 0.00 0.00 0.00 4.92
2821 3073 6.879400 TCTCTCTCCTCTTAAATAACTTGCC 58.121 40.000 0.00 0.00 0.00 4.52
2822 3074 8.200792 TCATCTCTCTCCTCTTAAATAACTTGC 58.799 37.037 0.00 0.00 0.00 4.01
2823 3075 9.748708 CTCATCTCTCTCCTCTTAAATAACTTG 57.251 37.037 0.00 0.00 0.00 3.16
2824 3076 9.487442 ACTCATCTCTCTCCTCTTAAATAACTT 57.513 33.333 0.00 0.00 0.00 2.66
2825 3077 8.912988 CACTCATCTCTCTCCTCTTAAATAACT 58.087 37.037 0.00 0.00 0.00 2.24
2826 3078 8.691797 ACACTCATCTCTCTCCTCTTAAATAAC 58.308 37.037 0.00 0.00 0.00 1.89
2827 3079 8.690884 CACACTCATCTCTCTCCTCTTAAATAA 58.309 37.037 0.00 0.00 0.00 1.40
2828 3080 7.286546 CCACACTCATCTCTCTCCTCTTAAATA 59.713 40.741 0.00 0.00 0.00 1.40
2829 3081 6.098124 CCACACTCATCTCTCTCCTCTTAAAT 59.902 42.308 0.00 0.00 0.00 1.40
2830 3082 5.420421 CCACACTCATCTCTCTCCTCTTAAA 59.580 44.000 0.00 0.00 0.00 1.52
2831 3083 4.952957 CCACACTCATCTCTCTCCTCTTAA 59.047 45.833 0.00 0.00 0.00 1.85
2832 3084 4.017958 ACCACACTCATCTCTCTCCTCTTA 60.018 45.833 0.00 0.00 0.00 2.10
2833 3085 3.245586 ACCACACTCATCTCTCTCCTCTT 60.246 47.826 0.00 0.00 0.00 2.85
2834 3086 2.311542 ACCACACTCATCTCTCTCCTCT 59.688 50.000 0.00 0.00 0.00 3.69
2835 3087 2.426738 CACCACACTCATCTCTCTCCTC 59.573 54.545 0.00 0.00 0.00 3.71
2836 3088 2.042297 TCACCACACTCATCTCTCTCCT 59.958 50.000 0.00 0.00 0.00 3.69
2837 3089 2.165437 GTCACCACACTCATCTCTCTCC 59.835 54.545 0.00 0.00 0.00 3.71
2838 3090 2.165437 GGTCACCACACTCATCTCTCTC 59.835 54.545 0.00 0.00 0.00 3.20
2839 3091 2.175202 GGTCACCACACTCATCTCTCT 58.825 52.381 0.00 0.00 0.00 3.10
2840 3092 1.205893 GGGTCACCACACTCATCTCTC 59.794 57.143 0.00 0.00 36.50 3.20
2841 3093 1.270907 GGGTCACCACACTCATCTCT 58.729 55.000 0.00 0.00 36.50 3.10
2842 3094 0.250513 GGGGTCACCACACTCATCTC 59.749 60.000 0.00 0.00 39.85 2.75
2843 3095 0.473694 TGGGGTCACCACACTCATCT 60.474 55.000 0.00 0.00 46.80 2.90
2844 3096 0.036010 CTGGGGTCACCACACTCATC 60.036 60.000 0.00 0.00 46.80 2.92
2845 3097 1.492133 CCTGGGGTCACCACACTCAT 61.492 60.000 0.00 0.00 46.80 2.90
2846 3098 2.146724 CCTGGGGTCACCACACTCA 61.147 63.158 0.00 0.00 46.80 3.41
2847 3099 1.415672 TTCCTGGGGTCACCACACTC 61.416 60.000 0.00 0.00 46.80 3.51
2848 3100 1.385347 TTCCTGGGGTCACCACACT 60.385 57.895 0.00 0.00 46.80 3.55
2849 3101 1.073199 CTTCCTGGGGTCACCACAC 59.927 63.158 0.00 0.00 46.80 3.82
2850 3102 0.696143 TTCTTCCTGGGGTCACCACA 60.696 55.000 0.00 0.00 46.80 4.17
2851 3103 0.476771 TTTCTTCCTGGGGTCACCAC 59.523 55.000 0.00 0.00 46.80 4.16
2853 3105 0.476771 TGTTTCTTCCTGGGGTCACC 59.523 55.000 0.00 0.00 40.81 4.02
2854 3106 1.143073 ACTGTTTCTTCCTGGGGTCAC 59.857 52.381 0.00 0.00 0.00 3.67
2855 3107 1.142870 CACTGTTTCTTCCTGGGGTCA 59.857 52.381 0.00 0.00 0.00 4.02
2856 3108 1.897560 CACTGTTTCTTCCTGGGGTC 58.102 55.000 0.00 0.00 0.00 4.46
2857 3109 0.178990 GCACTGTTTCTTCCTGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
2858 3110 0.111253 AGCACTGTTTCTTCCTGGGG 59.889 55.000 0.00 0.00 0.00 4.96
2859 3111 2.859165 TAGCACTGTTTCTTCCTGGG 57.141 50.000 0.00 0.00 0.00 4.45
2860 3112 3.882888 TGTTTAGCACTGTTTCTTCCTGG 59.117 43.478 0.00 0.00 0.00 4.45
2861 3113 4.552767 CGTGTTTAGCACTGTTTCTTCCTG 60.553 45.833 0.00 0.00 45.57 3.86
2862 3114 3.560068 CGTGTTTAGCACTGTTTCTTCCT 59.440 43.478 0.00 0.00 45.57 3.36
2863 3115 3.311596 ACGTGTTTAGCACTGTTTCTTCC 59.688 43.478 0.00 0.00 45.57 3.46
2864 3116 4.033587 TCACGTGTTTAGCACTGTTTCTTC 59.966 41.667 16.51 0.00 45.57 2.87
2865 3117 3.936453 TCACGTGTTTAGCACTGTTTCTT 59.064 39.130 16.51 0.00 45.57 2.52
2866 3118 3.527533 TCACGTGTTTAGCACTGTTTCT 58.472 40.909 16.51 0.00 45.57 2.52
2867 3119 3.936902 TCACGTGTTTAGCACTGTTTC 57.063 42.857 16.51 0.00 45.57 2.78
2868 3120 4.574828 AGATTCACGTGTTTAGCACTGTTT 59.425 37.500 16.51 0.00 45.57 2.83
2869 3121 4.127171 AGATTCACGTGTTTAGCACTGTT 58.873 39.130 16.51 0.00 45.57 3.16
2870 3122 3.728845 AGATTCACGTGTTTAGCACTGT 58.271 40.909 16.51 0.00 45.57 3.55
2871 3123 4.327357 CCTAGATTCACGTGTTTAGCACTG 59.673 45.833 16.51 0.00 45.57 3.66
2872 3124 4.495422 CCTAGATTCACGTGTTTAGCACT 58.505 43.478 16.51 8.93 45.57 4.40
2873 3125 3.062234 GCCTAGATTCACGTGTTTAGCAC 59.938 47.826 16.51 1.97 44.36 4.40
2874 3126 3.259064 GCCTAGATTCACGTGTTTAGCA 58.741 45.455 16.51 0.00 0.00 3.49
2875 3127 3.259064 TGCCTAGATTCACGTGTTTAGC 58.741 45.455 16.51 10.90 0.00 3.09
2876 3128 5.856126 TTTGCCTAGATTCACGTGTTTAG 57.144 39.130 16.51 12.17 0.00 1.85
2877 3129 5.527951 TGTTTTGCCTAGATTCACGTGTTTA 59.472 36.000 16.51 2.77 0.00 2.01
2878 3130 4.336993 TGTTTTGCCTAGATTCACGTGTTT 59.663 37.500 16.51 3.90 0.00 2.83
2879 3131 3.880490 TGTTTTGCCTAGATTCACGTGTT 59.120 39.130 16.51 4.31 0.00 3.32
2880 3132 3.472652 TGTTTTGCCTAGATTCACGTGT 58.527 40.909 16.51 0.00 0.00 4.49
2881 3133 4.685169 ATGTTTTGCCTAGATTCACGTG 57.315 40.909 9.94 9.94 0.00 4.49
2882 3134 5.705609 AAATGTTTTGCCTAGATTCACGT 57.294 34.783 0.00 0.00 0.00 4.49
2883 3135 7.273381 CCTTTAAATGTTTTGCCTAGATTCACG 59.727 37.037 0.00 0.00 0.00 4.35
2884 3136 8.303876 TCCTTTAAATGTTTTGCCTAGATTCAC 58.696 33.333 0.00 0.00 0.00 3.18
2885 3137 8.415950 TCCTTTAAATGTTTTGCCTAGATTCA 57.584 30.769 0.00 0.00 0.00 2.57
2886 3138 9.358872 CTTCCTTTAAATGTTTTGCCTAGATTC 57.641 33.333 0.00 0.00 0.00 2.52
2887 3139 8.314021 CCTTCCTTTAAATGTTTTGCCTAGATT 58.686 33.333 0.00 0.00 0.00 2.40
2888 3140 7.673926 TCCTTCCTTTAAATGTTTTGCCTAGAT 59.326 33.333 0.00 0.00 0.00 1.98
2889 3141 7.007723 TCCTTCCTTTAAATGTTTTGCCTAGA 58.992 34.615 0.00 0.00 0.00 2.43
2890 3142 7.227049 TCCTTCCTTTAAATGTTTTGCCTAG 57.773 36.000 0.00 0.00 0.00 3.02
2891 3143 7.604657 TTCCTTCCTTTAAATGTTTTGCCTA 57.395 32.000 0.00 0.00 0.00 3.93
2892 3144 6.493189 TTCCTTCCTTTAAATGTTTTGCCT 57.507 33.333 0.00 0.00 0.00 4.75
2893 3145 5.179368 GCTTCCTTCCTTTAAATGTTTTGCC 59.821 40.000 0.00 0.00 0.00 4.52
2894 3146 5.179368 GGCTTCCTTCCTTTAAATGTTTTGC 59.821 40.000 0.00 0.00 0.00 3.68
2895 3147 5.700832 GGGCTTCCTTCCTTTAAATGTTTTG 59.299 40.000 0.00 0.00 0.00 2.44
2896 3148 5.368230 TGGGCTTCCTTCCTTTAAATGTTTT 59.632 36.000 0.00 0.00 0.00 2.43
2897 3149 4.904853 TGGGCTTCCTTCCTTTAAATGTTT 59.095 37.500 0.00 0.00 0.00 2.83
2898 3150 4.283467 GTGGGCTTCCTTCCTTTAAATGTT 59.717 41.667 0.00 0.00 0.00 2.71
2899 3151 3.832490 GTGGGCTTCCTTCCTTTAAATGT 59.168 43.478 0.00 0.00 0.00 2.71
2900 3152 3.195610 GGTGGGCTTCCTTCCTTTAAATG 59.804 47.826 0.00 0.00 0.00 2.32
2901 3153 3.181412 TGGTGGGCTTCCTTCCTTTAAAT 60.181 43.478 0.00 0.00 0.00 1.40
2902 3154 2.178106 TGGTGGGCTTCCTTCCTTTAAA 59.822 45.455 0.00 0.00 0.00 1.52
2903 3155 1.783979 TGGTGGGCTTCCTTCCTTTAA 59.216 47.619 0.00 0.00 0.00 1.52
2904 3156 1.451449 TGGTGGGCTTCCTTCCTTTA 58.549 50.000 0.00 0.00 0.00 1.85
2905 3157 0.560688 TTGGTGGGCTTCCTTCCTTT 59.439 50.000 0.00 0.00 0.00 3.11
2906 3158 0.786435 ATTGGTGGGCTTCCTTCCTT 59.214 50.000 0.00 0.00 0.00 3.36
2907 3159 1.285078 GTATTGGTGGGCTTCCTTCCT 59.715 52.381 0.00 0.00 0.00 3.36
2908 3160 1.005450 TGTATTGGTGGGCTTCCTTCC 59.995 52.381 0.00 0.00 0.00 3.46
2909 3161 2.507407 TGTATTGGTGGGCTTCCTTC 57.493 50.000 0.00 0.00 0.00 3.46
2910 3162 2.311542 TCATGTATTGGTGGGCTTCCTT 59.688 45.455 0.00 0.00 0.00 3.36
2911 3163 1.922447 TCATGTATTGGTGGGCTTCCT 59.078 47.619 0.00 0.00 0.00 3.36
2912 3164 2.435372 TCATGTATTGGTGGGCTTCC 57.565 50.000 0.00 0.00 0.00 3.46
2913 3165 2.099756 GCTTCATGTATTGGTGGGCTTC 59.900 50.000 0.00 0.00 0.00 3.86
2914 3166 2.102578 GCTTCATGTATTGGTGGGCTT 58.897 47.619 0.00 0.00 0.00 4.35
2915 3167 1.285962 AGCTTCATGTATTGGTGGGCT 59.714 47.619 0.00 0.00 0.00 5.19
2916 3168 1.767759 AGCTTCATGTATTGGTGGGC 58.232 50.000 0.00 0.00 0.00 5.36
2917 3169 4.949856 ACTAAAGCTTCATGTATTGGTGGG 59.050 41.667 0.00 0.00 0.00 4.61
2918 3170 6.324819 CAACTAAAGCTTCATGTATTGGTGG 58.675 40.000 0.00 0.00 0.00 4.61
2919 3171 5.801947 GCAACTAAAGCTTCATGTATTGGTG 59.198 40.000 0.00 0.00 0.00 4.17
2920 3172 5.711976 AGCAACTAAAGCTTCATGTATTGGT 59.288 36.000 0.00 2.35 39.87 3.67
2921 3173 6.199937 AGCAACTAAAGCTTCATGTATTGG 57.800 37.500 0.00 0.00 39.87 3.16
2922 3174 9.793252 ATTTAGCAACTAAAGCTTCATGTATTG 57.207 29.630 0.00 0.71 43.25 1.90
2924 3176 9.177608 TGATTTAGCAACTAAAGCTTCATGTAT 57.822 29.630 14.32 0.00 41.23 2.29
2925 3177 8.560355 TGATTTAGCAACTAAAGCTTCATGTA 57.440 30.769 14.32 0.00 41.23 2.29
2926 3178 7.452880 TGATTTAGCAACTAAAGCTTCATGT 57.547 32.000 14.32 0.00 41.23 3.21
2927 3179 8.922058 AATGATTTAGCAACTAAAGCTTCATG 57.078 30.769 14.32 0.00 41.23 3.07
2948 3200 8.458843 GGTTGCTAAGCTTACTTCATTTAATGA 58.541 33.333 0.86 3.20 37.33 2.57
2949 3201 8.243426 TGGTTGCTAAGCTTACTTCATTTAATG 58.757 33.333 0.86 0.00 37.33 1.90
2950 3202 8.348285 TGGTTGCTAAGCTTACTTCATTTAAT 57.652 30.769 0.86 0.00 37.33 1.40
2951 3203 7.753309 TGGTTGCTAAGCTTACTTCATTTAA 57.247 32.000 0.86 0.00 37.33 1.52
2952 3204 7.938140 ATGGTTGCTAAGCTTACTTCATTTA 57.062 32.000 0.86 0.00 37.33 1.40
2953 3205 6.840780 ATGGTTGCTAAGCTTACTTCATTT 57.159 33.333 0.86 0.00 37.33 2.32
2954 3206 7.415653 GCTTATGGTTGCTAAGCTTACTTCATT 60.416 37.037 0.86 0.00 44.88 2.57
2955 3207 6.038714 GCTTATGGTTGCTAAGCTTACTTCAT 59.961 38.462 0.86 5.42 44.88 2.57
2956 3208 5.354234 GCTTATGGTTGCTAAGCTTACTTCA 59.646 40.000 0.86 0.00 44.88 3.02
2957 3209 5.811588 GCTTATGGTTGCTAAGCTTACTTC 58.188 41.667 0.86 0.00 44.88 3.01
2958 3210 5.819825 GCTTATGGTTGCTAAGCTTACTT 57.180 39.130 0.86 0.00 44.88 2.24
2966 3218 3.945285 GGTGCTTAGCTTATGGTTGCTAA 59.055 43.478 5.60 7.14 45.78 3.09
2967 3219 3.199946 AGGTGCTTAGCTTATGGTTGCTA 59.800 43.478 5.60 0.00 40.35 3.49
2968 3220 2.025887 AGGTGCTTAGCTTATGGTTGCT 60.026 45.455 5.60 0.00 42.67 3.91
2969 3221 2.369394 AGGTGCTTAGCTTATGGTTGC 58.631 47.619 5.60 0.00 0.00 4.17
2970 3222 5.679734 CATAGGTGCTTAGCTTATGGTTG 57.320 43.478 5.60 0.00 0.00 3.77
2986 3238 6.291377 CAACTATACTCACCAATGCATAGGT 58.709 40.000 0.00 0.00 39.10 3.08
2987 3239 5.180117 GCAACTATACTCACCAATGCATAGG 59.820 44.000 0.00 0.00 33.00 2.57
2988 3240 5.994054 AGCAACTATACTCACCAATGCATAG 59.006 40.000 0.00 0.00 35.11 2.23
2989 3241 5.928976 AGCAACTATACTCACCAATGCATA 58.071 37.500 0.00 0.00 35.11 3.14
2990 3242 4.785301 AGCAACTATACTCACCAATGCAT 58.215 39.130 0.00 0.00 35.11 3.96
2991 3243 4.220693 AGCAACTATACTCACCAATGCA 57.779 40.909 0.00 0.00 35.11 3.96
2992 3244 5.277538 GCTTAGCAACTATACTCACCAATGC 60.278 44.000 0.00 0.00 0.00 3.56
2993 3245 6.051717 AGCTTAGCAACTATACTCACCAATG 58.948 40.000 7.07 0.00 0.00 2.82
2994 3246 6.240549 AGCTTAGCAACTATACTCACCAAT 57.759 37.500 7.07 0.00 0.00 3.16
2995 3247 5.677319 AGCTTAGCAACTATACTCACCAA 57.323 39.130 7.07 0.00 0.00 3.67
2996 3248 6.978674 ATAGCTTAGCAACTATACTCACCA 57.021 37.500 7.07 0.00 0.00 4.17
2997 3249 9.760077 TTAAATAGCTTAGCAACTATACTCACC 57.240 33.333 7.07 0.00 0.00 4.02
3002 3254 9.813080 GCACATTAAATAGCTTAGCAACTATAC 57.187 33.333 7.07 0.00 0.00 1.47
3003 3255 9.778741 AGCACATTAAATAGCTTAGCAACTATA 57.221 29.630 7.07 0.00 32.52 1.31
3004 3256 8.682936 AGCACATTAAATAGCTTAGCAACTAT 57.317 30.769 7.07 0.00 32.52 2.12
3005 3257 8.506168 AAGCACATTAAATAGCTTAGCAACTA 57.494 30.769 7.07 0.00 44.73 2.24
3006 3258 7.396540 AAGCACATTAAATAGCTTAGCAACT 57.603 32.000 7.07 0.00 44.73 3.16
3028 3280 3.462021 GGTGCTTAGATGAGGTGCTAAG 58.538 50.000 0.00 0.00 43.95 2.18
3029 3281 2.170607 GGGTGCTTAGATGAGGTGCTAA 59.829 50.000 0.00 0.00 0.00 3.09
3030 3282 1.762957 GGGTGCTTAGATGAGGTGCTA 59.237 52.381 0.00 0.00 0.00 3.49
3031 3283 0.543749 GGGTGCTTAGATGAGGTGCT 59.456 55.000 0.00 0.00 0.00 4.40
3032 3284 0.253044 TGGGTGCTTAGATGAGGTGC 59.747 55.000 0.00 0.00 0.00 5.01
3033 3285 2.569059 CATGGGTGCTTAGATGAGGTG 58.431 52.381 0.00 0.00 0.00 4.00
3067 3319 3.250464 CTCTACCGTTCTCCGTATTCG 57.750 52.381 0.00 0.00 33.66 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.