Multiple sequence alignment - TraesCS7B01G258300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G258300 chr7B 100.000 5868 0 0 1 5868 478861934 478856067 0.000000e+00 10837.0
1 TraesCS7B01G258300 chr7A 91.236 2419 154 29 1945 4325 543437614 543440012 0.000000e+00 3240.0
2 TraesCS7B01G258300 chr7A 93.510 832 31 9 4493 5323 543440162 543440971 0.000000e+00 1216.0
3 TraesCS7B01G258300 chr7A 91.856 835 57 5 736 1563 543436492 543437322 0.000000e+00 1155.0
4 TraesCS7B01G258300 chr7A 91.026 312 15 3 5555 5866 543442019 543442317 5.470000e-110 409.0
5 TraesCS7B01G258300 chr7A 91.870 246 11 3 5331 5576 543441774 543442010 9.420000e-88 335.0
6 TraesCS7B01G258300 chr7A 92.958 213 12 2 1562 1771 543437404 543437616 2.050000e-79 307.0
7 TraesCS7B01G258300 chr7A 92.208 77 3 1 4324 4397 543440044 543440120 8.040000e-19 106.0
8 TraesCS7B01G258300 chr7D 90.886 1942 136 21 1947 3862 454674859 454672933 0.000000e+00 2567.0
9 TraesCS7B01G258300 chr7D 93.320 1003 49 9 4441 5429 454672329 454671331 0.000000e+00 1465.0
10 TraesCS7B01G258300 chr7D 91.055 1062 64 16 516 1562 454676197 454675152 0.000000e+00 1406.0
11 TraesCS7B01G258300 chr7D 91.515 495 37 4 3836 4325 454672932 454672438 0.000000e+00 676.0
12 TraesCS7B01G258300 chr7D 91.598 488 39 2 24 511 95115370 95114885 0.000000e+00 673.0
13 TraesCS7B01G258300 chr7D 90.141 497 46 2 20 516 556135268 556134775 1.380000e-180 643.0
14 TraesCS7B01G258300 chr7D 90.068 443 23 11 5421 5861 454671234 454670811 6.640000e-154 555.0
15 TraesCS7B01G258300 chr7D 91.905 210 13 3 1563 1770 454675066 454674859 2.070000e-74 291.0
16 TraesCS7B01G258300 chr7D 87.640 178 17 1 1772 1944 13392224 13392401 9.970000e-48 202.0
17 TraesCS7B01G258300 chr7D 91.250 80 4 2 4324 4400 454672411 454672332 8.040000e-19 106.0
18 TraesCS7B01G258300 chr6D 91.683 505 41 1 20 524 411224656 411224153 0.000000e+00 699.0
19 TraesCS7B01G258300 chr6D 92.143 140 11 0 1805 1944 274304413 274304552 1.290000e-46 198.0
20 TraesCS7B01G258300 chr2D 91.054 503 39 1 20 516 595152703 595152201 0.000000e+00 675.0
21 TraesCS7B01G258300 chr2D 89.349 507 49 4 12 518 391827300 391826799 2.980000e-177 632.0
22 TraesCS7B01G258300 chr5D 90.600 500 42 4 20 518 275166389 275165894 0.000000e+00 658.0
23 TraesCS7B01G258300 chr5D 90.524 496 47 0 20 515 504071568 504071073 0.000000e+00 656.0
24 TraesCS7B01G258300 chr5D 90.000 500 43 5 20 518 93060103 93060596 1.780000e-179 640.0
25 TraesCS7B01G258300 chr5D 91.339 127 11 0 2159 2285 277069024 277069150 2.170000e-39 174.0
26 TraesCS7B01G258300 chr5D 78.970 233 34 12 2497 2720 277069403 277069629 1.700000e-30 145.0
27 TraesCS7B01G258300 chr3D 89.738 497 48 1 20 516 297680259 297679766 2.980000e-177 632.0
28 TraesCS7B01G258300 chr3D 92.466 146 11 0 1805 1950 409470926 409470781 5.960000e-50 209.0
29 TraesCS7B01G258300 chrUn 88.108 185 11 4 1772 1945 71310538 71310354 5.960000e-50 209.0
30 TraesCS7B01G258300 chr3B 92.857 140 8 2 1805 1944 480568202 480568339 9.970000e-48 202.0
31 TraesCS7B01G258300 chr6B 92.143 140 11 0 1805 1944 436494762 436494901 1.290000e-46 198.0
32 TraesCS7B01G258300 chr6B 76.437 174 27 9 1767 1927 640398714 640398886 1.360000e-11 82.4
33 TraesCS7B01G258300 chr5B 86.957 184 13 1 1772 1944 632125094 632125277 4.640000e-46 196.0
34 TraesCS7B01G258300 chr5B 92.126 127 10 0 2159 2285 314957977 314958103 4.670000e-41 180.0
35 TraesCS7B01G258300 chr5B 78.879 232 36 8 2497 2720 314958356 314958582 1.700000e-30 145.0
36 TraesCS7B01G258300 chr3A 91.912 136 11 0 1808 1943 491194214 491194079 2.160000e-44 191.0
37 TraesCS7B01G258300 chr1B 91.367 139 10 2 1806 1944 667979864 667980000 7.760000e-44 189.0
38 TraesCS7B01G258300 chr5A 91.339 127 11 0 2159 2285 365931869 365931995 2.170000e-39 174.0
39 TraesCS7B01G258300 chr5A 78.541 233 37 10 2497 2720 365932249 365932477 2.200000e-29 141.0
40 TraesCS7B01G258300 chr4A 76.596 188 23 10 1770 1937 705229693 705229507 3.770000e-12 84.2
41 TraesCS7B01G258300 chr4A 97.561 41 0 1 1767 1806 340498578 340498538 1.060000e-07 69.4
42 TraesCS7B01G258300 chr2B 100.000 37 0 0 1770 1806 111930792 111930828 1.060000e-07 69.4
43 TraesCS7B01G258300 chr2B 100.000 37 0 0 1770 1806 113399800 113399764 1.060000e-07 69.4
44 TraesCS7B01G258300 chr2B 100.000 37 0 0 1770 1806 113410400 113410364 1.060000e-07 69.4
45 TraesCS7B01G258300 chr2B 100.000 37 0 0 1770 1806 113437829 113437793 1.060000e-07 69.4
46 TraesCS7B01G258300 chr2B 100.000 37 0 0 1770 1806 113476149 113476113 1.060000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G258300 chr7B 478856067 478861934 5867 True 10837.000000 10837 100.000000 1 5868 1 chr7B.!!$R1 5867
1 TraesCS7B01G258300 chr7A 543436492 543442317 5825 False 966.857143 3240 92.094857 736 5866 7 chr7A.!!$F1 5130
2 TraesCS7B01G258300 chr7D 454670811 454676197 5386 True 1009.428571 2567 91.428429 516 5861 7 chr7D.!!$R3 5345
3 TraesCS7B01G258300 chr6D 411224153 411224656 503 True 699.000000 699 91.683000 20 524 1 chr6D.!!$R1 504
4 TraesCS7B01G258300 chr2D 595152201 595152703 502 True 675.000000 675 91.054000 20 516 1 chr2D.!!$R2 496
5 TraesCS7B01G258300 chr2D 391826799 391827300 501 True 632.000000 632 89.349000 12 518 1 chr2D.!!$R1 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
225 234 0.377203 CCATTTAAGAAGGACCGCGC 59.623 55.0 0.00 0.00 0.00 6.86 F
380 389 0.873743 CAAAACCGGCGCATGTTTGT 60.874 50.0 22.10 12.41 35.03 2.83 F
1542 1570 0.746923 GGGGATGGTGTTCGCTTACC 60.747 60.0 0.00 0.00 37.48 2.85 F
3035 3182 0.178995 TGCATGTTCCACTTCTGGCA 60.179 50.0 0.00 0.00 37.49 4.92 F
3083 3230 0.531974 TTCCGCGACAGCTTGAGTTT 60.532 50.0 8.23 0.00 42.32 2.66 F
3876 4051 0.035152 TGCACTGCCTCATGGGTTAG 60.035 55.0 0.00 0.00 37.43 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1518 1546 0.180406 GCGAACACCATCCCCTATGT 59.820 55.0 0.00 0.00 33.34 2.29 R
1836 1952 1.154197 GGCAAGACAACTCGGTAACC 58.846 55.0 0.00 0.00 0.00 2.85 R
3067 3214 0.111089 GTCAAACTCAAGCTGTCGCG 60.111 55.0 0.00 0.00 42.32 5.87 R
3858 4033 0.253044 TCTAACCCATGAGGCAGTGC 59.747 55.0 6.55 6.55 40.58 4.40 R
4816 5033 0.322098 CCGCAAGACCCATGGTGTTA 60.322 55.0 11.73 0.00 37.06 2.41 R
5482 6608 0.033601 AGCACCAGATCGAGTCCTCT 60.034 55.0 0.00 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 0.666577 ACTTAGAACCACGACAGCGC 60.667 55.000 0.00 0.00 42.48 5.92
138 147 3.246112 GGTTTGGGGGTTTGGGGC 61.246 66.667 0.00 0.00 0.00 5.80
190 199 2.261671 GGCAGTGTGGACGACGAT 59.738 61.111 0.00 0.00 0.00 3.73
225 234 0.377203 CCATTTAAGAAGGACCGCGC 59.623 55.000 0.00 0.00 0.00 6.86
250 259 2.671070 CCTGGGCGGATGACAAGT 59.329 61.111 0.00 0.00 33.16 3.16
257 266 2.763215 GGATGACAAGTGGGGCCA 59.237 61.111 4.39 0.00 0.00 5.36
356 365 4.973055 CCGTTTGGTGTCCGCCGA 62.973 66.667 0.00 0.00 0.00 5.54
365 374 2.031465 GTCCGCCGAGACCCAAAA 59.969 61.111 0.00 0.00 0.00 2.44
380 389 0.873743 CAAAACCGGCGCATGTTTGT 60.874 50.000 22.10 12.41 35.03 2.83
394 403 2.028130 TGTTTGTGCTCGAAATGGGTT 58.972 42.857 0.00 0.00 0.00 4.11
398 407 1.074775 TGCTCGAAATGGGTTGGCT 59.925 52.632 0.00 0.00 0.00 4.75
420 429 2.227194 GGACACAAAACGGACCAGATT 58.773 47.619 0.00 0.00 0.00 2.40
458 467 1.454847 TGGGCTGCCTCGTTTGTTT 60.455 52.632 19.68 0.00 0.00 2.83
467 476 3.949113 TGCCTCGTTTGTTTCTTTTACCT 59.051 39.130 0.00 0.00 0.00 3.08
479 488 2.364970 TCTTTTACCTCAAACGGACGGA 59.635 45.455 0.00 0.00 0.00 4.69
576 586 4.554363 CAGCTACTCCGGCGGTCG 62.554 72.222 27.32 20.01 38.88 4.79
596 606 2.668212 CAAACCGAGCCCGCTTCA 60.668 61.111 0.00 0.00 0.00 3.02
626 636 1.078708 TCATCGAAAACCCCCTCGC 60.079 57.895 0.00 0.00 35.04 5.03
630 640 4.753662 GAAAACCCCCTCGCCCCC 62.754 72.222 0.00 0.00 0.00 5.40
1017 1043 2.604382 ATGGCCCCTTGTGCAACC 60.604 61.111 0.00 0.00 34.36 3.77
1075 1101 1.521141 GCCTCTCAGAGCATGCTCA 59.479 57.895 40.91 25.20 44.99 4.26
1084 1110 2.894387 GCATGCTCACCTCGAGGC 60.894 66.667 31.56 17.44 42.55 4.70
1108 1134 1.366854 CGTCTCACGGATCGACCTGA 61.367 60.000 0.00 0.28 38.08 3.86
1115 1141 2.762234 GGATCGACCTGACGCTCGT 61.762 63.158 0.00 0.00 35.41 4.18
1259 1285 2.876581 TCTTAGAGGTGAGCAGTGTCA 58.123 47.619 0.00 0.00 0.00 3.58
1269 1295 1.002430 GAGCAGTGTCAGGAATGGTGA 59.998 52.381 0.00 0.00 0.00 4.02
1304 1331 7.843490 TGGTACTTCTATGCATGTAAAGAAC 57.157 36.000 10.16 0.00 0.00 3.01
1326 1353 7.716998 AGAACAATTATGTAATTCCTCATCGCT 59.283 33.333 0.00 0.00 39.40 4.93
1338 1365 3.994392 TCCTCATCGCTTCTTGTTGTAAC 59.006 43.478 0.00 0.00 0.00 2.50
1346 1373 4.963953 CGCTTCTTGTTGTAACTCTGTTTG 59.036 41.667 0.00 0.00 0.00 2.93
1351 1378 5.355910 TCTTGTTGTAACTCTGTTTGGGTTC 59.644 40.000 0.00 0.00 0.00 3.62
1355 1382 6.708949 TGTTGTAACTCTGTTTGGGTTCTATC 59.291 38.462 0.00 0.00 0.00 2.08
1468 1496 3.264193 TCAGGTTCATGCATACCACTTCT 59.736 43.478 18.72 0.00 36.87 2.85
1478 1506 4.191544 GCATACCACTTCTACTGATTGCA 58.808 43.478 0.00 0.00 0.00 4.08
1542 1570 0.746923 GGGGATGGTGTTCGCTTACC 60.747 60.000 0.00 0.00 37.48 2.85
1557 1585 3.532542 GCTTACCTTGGAGTTTAGCGAT 58.467 45.455 0.00 0.00 0.00 4.58
1614 1727 6.254281 ACTGTATTTTATCGCTTGTTTGCT 57.746 33.333 0.00 0.00 0.00 3.91
1629 1742 6.686679 GCTTGTTTGCTAAAATGGTGAAAAAC 59.313 34.615 0.00 0.00 0.00 2.43
1663 1778 7.849804 TGCTCTAAATCATTACCTGAAAGTC 57.150 36.000 0.00 0.00 37.44 3.01
1691 1806 4.091549 TCAGTTTACTACCCAGGGTACTG 58.908 47.826 24.75 24.75 44.51 2.74
1732 1848 3.885976 TGGGGGAAGTTTCATTGTACA 57.114 42.857 0.00 0.00 0.00 2.90
1736 1852 4.643334 GGGGGAAGTTTCATTGTACATACC 59.357 45.833 0.00 0.00 0.00 2.73
1771 1887 8.246180 ACCTCATGTAGTTTTATTTGCATGAAG 58.754 33.333 0.00 0.00 42.88 3.02
1772 1888 8.461222 CCTCATGTAGTTTTATTTGCATGAAGA 58.539 33.333 0.00 0.00 42.88 2.87
1773 1889 9.499585 CTCATGTAGTTTTATTTGCATGAAGAG 57.500 33.333 0.00 0.00 42.88 2.85
1774 1890 7.970061 TCATGTAGTTTTATTTGCATGAAGAGC 59.030 33.333 0.00 0.00 41.38 4.09
1775 1891 7.213216 TGTAGTTTTATTTGCATGAAGAGCA 57.787 32.000 0.00 0.00 40.85 4.26
1776 1892 7.829725 TGTAGTTTTATTTGCATGAAGAGCAT 58.170 30.769 0.00 0.00 42.33 3.79
1789 1905 5.319140 TGAAGAGCATGATTGGTTTGATG 57.681 39.130 0.00 0.00 32.62 3.07
1790 1906 3.795623 AGAGCATGATTGGTTTGATGC 57.204 42.857 0.00 0.00 41.29 3.91
1791 1907 2.429610 AGAGCATGATTGGTTTGATGCC 59.570 45.455 0.00 0.00 41.81 4.40
1792 1908 2.166870 GAGCATGATTGGTTTGATGCCA 59.833 45.455 0.00 0.00 41.81 4.92
1811 1927 3.827625 CCAAAAATTGGCATGCATTGTG 58.172 40.909 21.36 12.93 45.17 3.33
1812 1928 3.238441 CAAAAATTGGCATGCATTGTGC 58.762 40.909 21.36 0.00 45.29 4.57
1819 1935 2.589798 GCATGCATTGTGCCAACTAT 57.410 45.000 14.21 0.00 44.23 2.12
1820 1936 2.896168 GCATGCATTGTGCCAACTATT 58.104 42.857 14.21 0.00 44.23 1.73
1821 1937 2.605818 GCATGCATTGTGCCAACTATTG 59.394 45.455 14.21 0.00 44.23 1.90
1834 1950 5.099042 CCAACTATTGGCTACTACTTGGT 57.901 43.478 0.00 0.00 45.17 3.67
1835 1951 6.229936 CCAACTATTGGCTACTACTTGGTA 57.770 41.667 0.00 0.00 45.17 3.25
1836 1952 6.281405 CCAACTATTGGCTACTACTTGGTAG 58.719 44.000 3.50 3.50 45.17 3.18
1837 1953 6.281405 CAACTATTGGCTACTACTTGGTAGG 58.719 44.000 9.14 0.00 40.13 3.18
1838 1954 5.526434 ACTATTGGCTACTACTTGGTAGGT 58.474 41.667 9.14 0.00 40.13 3.08
1839 1955 5.962641 ACTATTGGCTACTACTTGGTAGGTT 59.037 40.000 9.14 0.00 40.13 3.50
1840 1956 7.128077 ACTATTGGCTACTACTTGGTAGGTTA 58.872 38.462 9.14 0.00 40.13 2.85
1841 1957 5.665916 TTGGCTACTACTTGGTAGGTTAC 57.334 43.478 9.14 0.00 40.13 2.50
1852 1968 3.949842 GGTAGGTTACCGAGTTGTCTT 57.050 47.619 0.00 0.00 39.39 3.01
1853 1969 3.582780 GGTAGGTTACCGAGTTGTCTTG 58.417 50.000 0.00 0.00 39.39 3.02
1854 1970 2.165319 AGGTTACCGAGTTGTCTTGC 57.835 50.000 0.00 0.00 0.00 4.01
1855 1971 1.154197 GGTTACCGAGTTGTCTTGCC 58.846 55.000 0.00 0.00 0.00 4.52
1856 1972 1.270678 GGTTACCGAGTTGTCTTGCCT 60.271 52.381 0.00 0.00 0.00 4.75
1857 1973 2.028748 GGTTACCGAGTTGTCTTGCCTA 60.029 50.000 0.00 0.00 0.00 3.93
1858 1974 3.369157 GGTTACCGAGTTGTCTTGCCTAT 60.369 47.826 0.00 0.00 0.00 2.57
1859 1975 2.674796 ACCGAGTTGTCTTGCCTATC 57.325 50.000 0.00 0.00 0.00 2.08
1860 1976 2.180276 ACCGAGTTGTCTTGCCTATCT 58.820 47.619 0.00 0.00 0.00 1.98
1861 1977 2.166664 ACCGAGTTGTCTTGCCTATCTC 59.833 50.000 0.00 0.00 0.00 2.75
1862 1978 2.166459 CCGAGTTGTCTTGCCTATCTCA 59.834 50.000 0.00 0.00 0.00 3.27
1863 1979 3.182967 CGAGTTGTCTTGCCTATCTCAC 58.817 50.000 0.00 0.00 0.00 3.51
1864 1980 3.367395 CGAGTTGTCTTGCCTATCTCACA 60.367 47.826 0.00 0.00 0.00 3.58
1865 1981 3.929610 GAGTTGTCTTGCCTATCTCACAC 59.070 47.826 0.00 0.00 0.00 3.82
1866 1982 3.324846 AGTTGTCTTGCCTATCTCACACA 59.675 43.478 0.00 0.00 0.00 3.72
1867 1983 4.065088 GTTGTCTTGCCTATCTCACACAA 58.935 43.478 0.00 0.00 0.00 3.33
1868 1984 4.350368 TGTCTTGCCTATCTCACACAAA 57.650 40.909 0.00 0.00 0.00 2.83
1869 1985 4.318332 TGTCTTGCCTATCTCACACAAAG 58.682 43.478 0.00 0.00 0.00 2.77
1870 1986 4.202357 TGTCTTGCCTATCTCACACAAAGT 60.202 41.667 0.00 0.00 0.00 2.66
1871 1987 4.757149 GTCTTGCCTATCTCACACAAAGTT 59.243 41.667 0.00 0.00 0.00 2.66
1872 1988 4.756642 TCTTGCCTATCTCACACAAAGTTG 59.243 41.667 0.00 0.00 0.00 3.16
1873 1989 2.813754 TGCCTATCTCACACAAAGTTGC 59.186 45.455 0.00 0.00 0.00 4.17
1874 1990 2.162408 GCCTATCTCACACAAAGTTGCC 59.838 50.000 0.00 0.00 0.00 4.52
1875 1991 3.411446 CCTATCTCACACAAAGTTGCCA 58.589 45.455 0.00 0.00 0.00 4.92
1876 1992 3.820467 CCTATCTCACACAAAGTTGCCAA 59.180 43.478 0.00 0.00 0.00 4.52
1877 1993 4.460382 CCTATCTCACACAAAGTTGCCAAT 59.540 41.667 0.00 0.00 0.00 3.16
1878 1994 5.647658 CCTATCTCACACAAAGTTGCCAATA 59.352 40.000 0.00 0.00 0.00 1.90
1879 1995 5.633830 ATCTCACACAAAGTTGCCAATAG 57.366 39.130 0.00 0.00 0.00 1.73
1880 1996 4.460263 TCTCACACAAAGTTGCCAATAGT 58.540 39.130 0.00 0.00 0.00 2.12
1881 1997 4.887071 TCTCACACAAAGTTGCCAATAGTT 59.113 37.500 0.00 0.00 0.00 2.24
1882 1998 4.930963 TCACACAAAGTTGCCAATAGTTG 58.069 39.130 0.00 0.00 0.00 3.16
1934 2050 3.331478 CCAAATATTGGCAGCAAACCA 57.669 42.857 0.00 0.00 45.17 3.67
1941 2057 3.591196 TTGGCAGCAAACCAATCATAC 57.409 42.857 0.00 0.00 42.23 2.39
1942 2058 2.806434 TGGCAGCAAACCAATCATACT 58.194 42.857 0.00 0.00 33.12 2.12
1943 2059 2.754552 TGGCAGCAAACCAATCATACTC 59.245 45.455 0.00 0.00 33.12 2.59
1944 2060 2.223340 GGCAGCAAACCAATCATACTCG 60.223 50.000 0.00 0.00 0.00 4.18
1945 2061 2.677836 GCAGCAAACCAATCATACTCGA 59.322 45.455 0.00 0.00 0.00 4.04
1946 2062 3.126858 GCAGCAAACCAATCATACTCGAA 59.873 43.478 0.00 0.00 0.00 3.71
1955 2071 4.024556 CCAATCATACTCGAATTGCTGACC 60.025 45.833 1.93 0.00 0.00 4.02
1968 2084 8.902806 TCGAATTGCTGACCTTATGAAAATTAT 58.097 29.630 0.00 0.00 0.00 1.28
1994 2110 0.824759 AGGGTTAGAGCACGTCCATC 59.175 55.000 0.00 0.00 0.00 3.51
2005 2121 5.770663 AGAGCACGTCCATCTATATTACTGT 59.229 40.000 0.00 0.00 0.00 3.55
2006 2122 6.265649 AGAGCACGTCCATCTATATTACTGTT 59.734 38.462 0.00 0.00 0.00 3.16
2047 2163 3.470709 CAATGGTGCTCATATTCTCGGT 58.529 45.455 0.00 0.00 34.44 4.69
2048 2164 4.631131 CAATGGTGCTCATATTCTCGGTA 58.369 43.478 0.00 0.00 34.44 4.02
2049 2165 3.728076 TGGTGCTCATATTCTCGGTAC 57.272 47.619 0.00 0.00 0.00 3.34
2050 2166 3.296854 TGGTGCTCATATTCTCGGTACT 58.703 45.455 0.00 0.00 0.00 2.73
2051 2167 4.466827 TGGTGCTCATATTCTCGGTACTA 58.533 43.478 0.00 0.00 0.00 1.82
2088 2204 8.495949 AGAAAGTGTGTAACTCATTAATGTTCG 58.504 33.333 14.97 7.74 38.56 3.95
2108 2224 6.371548 TGTTCGGAAAACTGGATTTGATAGAG 59.628 38.462 0.00 0.00 0.00 2.43
2222 2338 1.678598 GCTATGGCTGGGCAATTGCA 61.679 55.000 30.32 11.40 39.72 4.08
2285 2401 1.064758 TGGGTGCCTGTATGTTGATCC 60.065 52.381 0.00 0.00 0.00 3.36
2288 2404 2.485479 GGTGCCTGTATGTTGATCCGAT 60.485 50.000 0.00 0.00 0.00 4.18
2305 2421 3.709141 TCCGATCCTTGTGTCCATCATTA 59.291 43.478 0.00 0.00 0.00 1.90
2449 2583 2.092646 TGGATAGTTTTAGCCGGTGCAT 60.093 45.455 1.90 0.00 38.20 3.96
2470 2604 9.490663 GTGCATCACATATTTCTAAACACTTAC 57.509 33.333 0.00 0.00 34.08 2.34
2472 2606 7.850982 GCATCACATATTTCTAAACACTTACCG 59.149 37.037 0.00 0.00 0.00 4.02
2602 2736 7.212976 TGTTCCTGAAGATGTAATGCTCTATC 58.787 38.462 0.00 0.00 0.00 2.08
2621 2755 7.201565 GCTCTATCTTTGTGTATGTCCTTGTTC 60.202 40.741 0.00 0.00 0.00 3.18
2622 2756 7.676004 TCTATCTTTGTGTATGTCCTTGTTCA 58.324 34.615 0.00 0.00 0.00 3.18
2689 2823 7.813627 TGTTAGGTCAAAACAAACAAAAGGTAC 59.186 33.333 0.00 0.00 34.04 3.34
2731 2865 7.092891 TGGACTGTGAAGGTATGTCTATGAAAT 60.093 37.037 0.00 0.00 0.00 2.17
2774 2908 8.742554 ACTACCTAATTTTTGAATTTGCTTCG 57.257 30.769 0.00 0.00 36.60 3.79
2792 2938 6.331845 TGCTTCGAAATCATGCACAATATTT 58.668 32.000 5.04 0.00 0.00 1.40
2794 2940 7.972832 TGCTTCGAAATCATGCACAATATTTTA 59.027 29.630 5.04 0.00 0.00 1.52
2830 2976 3.045601 ACAGTGAGTGCATGTTAGGAC 57.954 47.619 0.00 0.00 0.00 3.85
2895 3042 3.435890 CCTTACCCCTTCCAAACTCAACA 60.436 47.826 0.00 0.00 0.00 3.33
2897 3044 1.569072 ACCCCTTCCAAACTCAACACT 59.431 47.619 0.00 0.00 0.00 3.55
2904 3051 2.163412 TCCAAACTCAACACTGTTGCAC 59.837 45.455 15.94 0.00 0.00 4.57
2907 3054 2.303163 ACTCAACACTGTTGCACGTA 57.697 45.000 15.94 0.00 0.00 3.57
2928 3075 5.121768 CGTACCTTGAATTTGAGGTGGTAAG 59.878 44.000 18.78 7.72 45.57 2.34
2931 3078 3.449746 TGAATTTGAGGTGGTAAGGGG 57.550 47.619 0.00 0.00 0.00 4.79
2934 3081 4.354387 TGAATTTGAGGTGGTAAGGGGTAA 59.646 41.667 0.00 0.00 0.00 2.85
2943 3090 5.667172 AGGTGGTAAGGGGTAATAACGTATT 59.333 40.000 0.00 0.00 0.00 1.89
2953 3100 8.588472 AGGGGTAATAACGTATTAGTGGTATTC 58.412 37.037 0.00 0.00 31.72 1.75
2965 3112 9.095065 GTATTAGTGGTATTCTTTGTGGTAGTG 57.905 37.037 0.00 0.00 0.00 2.74
2966 3113 4.324267 AGTGGTATTCTTTGTGGTAGTGC 58.676 43.478 0.00 0.00 0.00 4.40
2968 3115 3.007074 TGGTATTCTTTGTGGTAGTGCGA 59.993 43.478 0.00 0.00 0.00 5.10
2978 3125 1.476891 TGGTAGTGCGAGTCATCCTTC 59.523 52.381 0.00 0.00 0.00 3.46
2980 3127 2.166664 GGTAGTGCGAGTCATCCTTCTT 59.833 50.000 0.00 0.00 0.00 2.52
2982 3129 1.620819 AGTGCGAGTCATCCTTCTTGT 59.379 47.619 0.00 0.00 0.00 3.16
2983 3130 2.037772 AGTGCGAGTCATCCTTCTTGTT 59.962 45.455 0.00 0.00 0.00 2.83
2984 3131 2.158449 GTGCGAGTCATCCTTCTTGTTG 59.842 50.000 0.00 0.00 0.00 3.33
2986 3133 3.006430 TGCGAGTCATCCTTCTTGTTGTA 59.994 43.478 0.00 0.00 0.00 2.41
3016 3163 0.906775 CCTTTGGGCCTCATTGCAAT 59.093 50.000 5.99 5.99 0.00 3.56
3035 3182 0.178995 TGCATGTTCCACTTCTGGCA 60.179 50.000 0.00 0.00 37.49 4.92
3067 3214 7.700656 CCCAATTTAACAAATACGATCTGTTCC 59.299 37.037 0.95 0.00 35.09 3.62
3070 3217 1.924524 ACAAATACGATCTGTTCCGCG 59.075 47.619 0.00 0.00 0.00 6.46
3083 3230 0.531974 TTCCGCGACAGCTTGAGTTT 60.532 50.000 8.23 0.00 42.32 2.66
3196 3343 1.972588 AATGGTCCTGAGGTAGCCTT 58.027 50.000 0.00 0.00 31.76 4.35
3353 3501 3.193267 GTGGGTATCTTGCTGCAATTTCA 59.807 43.478 16.38 6.26 0.00 2.69
3401 3549 8.603304 TCTTTACTTAAGCACTTCCTTCCTATT 58.397 33.333 1.29 0.00 33.66 1.73
3435 3583 2.768253 TGCACATCCCTTCAGTACTG 57.232 50.000 17.17 17.17 0.00 2.74
3442 3590 1.825474 TCCCTTCAGTACTGTGCTAGC 59.175 52.381 21.99 8.10 0.00 3.42
3454 3602 8.515414 CAGTACTGTGCTAGCATTCATATAGTA 58.485 37.037 22.51 15.99 0.00 1.82
3456 3604 9.130312 GTACTGTGCTAGCATTCATATAGTAAC 57.870 37.037 22.51 3.33 0.00 2.50
3460 3608 7.872993 TGTGCTAGCATTCATATAGTAACCTTC 59.127 37.037 22.51 1.39 0.00 3.46
3490 3638 2.340721 TTTTCCCTGGCCAAATCCAT 57.659 45.000 7.01 0.00 35.22 3.41
3496 3644 1.684869 CCTGGCCAAATCCATTACCGT 60.685 52.381 7.01 0.00 35.22 4.83
3499 3647 2.291282 TGGCCAAATCCATTACCGTTCT 60.291 45.455 0.61 0.00 0.00 3.01
3580 3728 6.585416 TCTAGCATGAATCTCAATGCAAGTA 58.415 36.000 10.00 0.00 42.06 2.24
3592 3740 3.508845 ATGCAAGTACCAACCTCTGTT 57.491 42.857 0.00 0.00 34.14 3.16
3607 3755 5.357257 ACCTCTGTTGTACAACTTGTAGTG 58.643 41.667 32.58 22.54 41.67 2.74
3615 3763 4.509970 TGTACAACTTGTAGTGCACATGAC 59.490 41.667 21.04 14.08 36.90 3.06
3633 3781 5.422970 ACATGACATGTTGGCATAAAATCCT 59.577 36.000 15.48 0.00 46.16 3.24
3662 3810 7.091533 TCTAGGATCAAACCTTCTTTTCCTT 57.908 36.000 0.00 0.00 41.00 3.36
3667 3815 6.015095 GGATCAAACCTTCTTTTCCTTCATGT 60.015 38.462 0.00 0.00 0.00 3.21
3674 3822 5.334414 CCTTCTTTTCCTTCATGTTGTCTCG 60.334 44.000 0.00 0.00 0.00 4.04
3692 3840 5.526111 TGTCTCGTTTTAGCTTTAGTTTGCT 59.474 36.000 0.00 0.00 42.67 3.91
3703 3851 7.452880 AGCTTTAGTTTGCTTGTGAATCATA 57.547 32.000 0.00 0.00 35.86 2.15
3709 3857 5.769662 AGTTTGCTTGTGAATCATAGTGGAA 59.230 36.000 0.00 0.00 0.00 3.53
3713 3861 5.039333 GCTTGTGAATCATAGTGGAAATGC 58.961 41.667 0.00 0.00 0.00 3.56
3718 3866 6.032094 GTGAATCATAGTGGAAATGCTGTTG 58.968 40.000 0.00 0.00 0.00 3.33
3720 3868 2.754552 TCATAGTGGAAATGCTGTTGGC 59.245 45.455 0.00 0.00 42.22 4.52
3721 3869 2.584835 TAGTGGAAATGCTGTTGGCT 57.415 45.000 0.00 0.00 42.39 4.75
3723 3871 1.342174 AGTGGAAATGCTGTTGGCTTG 59.658 47.619 0.00 0.00 42.39 4.01
3726 3874 2.170187 TGGAAATGCTGTTGGCTTGTTT 59.830 40.909 0.00 0.00 42.39 2.83
3727 3875 3.386078 TGGAAATGCTGTTGGCTTGTTTA 59.614 39.130 0.00 0.00 42.39 2.01
3728 3876 3.989817 GGAAATGCTGTTGGCTTGTTTAG 59.010 43.478 0.00 0.00 42.39 1.85
3766 3914 4.702131 GCATGGAACTTCTAAGTGGACATT 59.298 41.667 0.00 0.00 39.66 2.71
3767 3915 5.392380 GCATGGAACTTCTAAGTGGACATTG 60.392 44.000 0.00 0.00 39.66 2.82
3770 3918 4.455877 GGAACTTCTAAGTGGACATTGGTG 59.544 45.833 0.00 0.00 39.66 4.17
3772 3920 3.181445 ACTTCTAAGTGGACATTGGTGCA 60.181 43.478 0.00 0.00 43.61 4.57
3786 3934 5.524646 ACATTGGTGCATGAAAAGTTCTTTG 59.475 36.000 0.00 0.00 0.00 2.77
3805 3953 8.515414 GTTCTTTGACCATTTATTAACTCTGCT 58.485 33.333 0.00 0.00 0.00 4.24
3827 3975 9.229784 CTGCTCAGCTTAATAAAATAATGTGTG 57.770 33.333 0.00 0.00 0.00 3.82
3828 3976 8.739039 TGCTCAGCTTAATAAAATAATGTGTGT 58.261 29.630 0.00 0.00 0.00 3.72
3858 4033 9.125026 GATAGAACCCCATAGCCATTATATTTG 57.875 37.037 0.00 0.00 0.00 2.32
3876 4051 0.035152 TGCACTGCCTCATGGGTTAG 60.035 55.000 0.00 0.00 37.43 2.34
3880 4055 2.947652 CACTGCCTCATGGGTTAGAATG 59.052 50.000 0.00 0.00 37.43 2.67
3935 4110 9.139734 ACATATATTGCATCTGAAAGGACAATT 57.860 29.630 0.00 0.00 34.56 2.32
3998 4174 4.771590 TTTCCAGCTATCTTTGCTTGTG 57.228 40.909 0.00 0.00 38.92 3.33
4042 4220 2.130193 AGATATGGTGGTGGCATGAGT 58.870 47.619 0.00 0.00 0.00 3.41
4134 4313 8.729805 TTTAAATGAGGTCTTTGTTTTGCATT 57.270 26.923 0.00 0.00 0.00 3.56
4240 4419 4.999950 CACCATATCTGCAGGTATCCTTTC 59.000 45.833 16.83 0.00 33.49 2.62
4244 4423 6.464892 CCATATCTGCAGGTATCCTTTCTCAA 60.465 42.308 16.83 0.00 0.00 3.02
4253 4432 7.309438 GCAGGTATCCTTTCTCAAAAGAAACAT 60.309 37.037 0.00 0.00 44.63 2.71
4283 4463 5.346181 ACAGCTAACTTATCTTGGAGGAC 57.654 43.478 0.00 0.00 0.00 3.85
4292 4472 1.561643 TCTTGGAGGACACCTAGCAG 58.438 55.000 0.00 0.00 31.76 4.24
4299 4479 4.721776 TGGAGGACACCTAGCAGAATAAAT 59.278 41.667 0.00 0.00 31.76 1.40
4301 4481 5.041191 AGGACACCTAGCAGAATAAATGG 57.959 43.478 0.00 0.00 28.47 3.16
4347 4560 3.648339 TTCTTGGATGTTTGCTCAAGC 57.352 42.857 0.00 0.00 37.21 4.01
4349 4562 1.891150 CTTGGATGTTTGCTCAAGCCT 59.109 47.619 0.00 0.00 41.18 4.58
4350 4563 2.877097 TGGATGTTTGCTCAAGCCTA 57.123 45.000 0.00 0.00 41.18 3.93
4351 4564 3.153369 TGGATGTTTGCTCAAGCCTAA 57.847 42.857 0.00 0.00 41.18 2.69
4352 4565 3.495331 TGGATGTTTGCTCAAGCCTAAA 58.505 40.909 0.00 0.00 41.18 1.85
4353 4566 3.255642 TGGATGTTTGCTCAAGCCTAAAC 59.744 43.478 9.72 9.72 41.18 2.01
4354 4567 3.492313 GATGTTTGCTCAAGCCTAAACG 58.508 45.455 11.18 0.00 38.79 3.60
4355 4568 2.294074 TGTTTGCTCAAGCCTAAACGT 58.706 42.857 11.18 0.00 38.79 3.99
4356 4569 2.032799 TGTTTGCTCAAGCCTAAACGTG 59.967 45.455 11.18 0.00 38.79 4.49
4397 4613 5.163513 GTCCATGGTAATCTGCTTTGTTTG 58.836 41.667 12.58 0.00 0.00 2.93
4400 4616 2.298729 TGGTAATCTGCTTTGTTTGGCC 59.701 45.455 0.00 0.00 0.00 5.36
4401 4617 2.562738 GGTAATCTGCTTTGTTTGGCCT 59.437 45.455 3.32 0.00 0.00 5.19
4402 4618 3.006859 GGTAATCTGCTTTGTTTGGCCTT 59.993 43.478 3.32 0.00 0.00 4.35
4403 4619 3.843893 AATCTGCTTTGTTTGGCCTTT 57.156 38.095 3.32 0.00 0.00 3.11
4404 4620 4.953940 AATCTGCTTTGTTTGGCCTTTA 57.046 36.364 3.32 0.00 0.00 1.85
4405 4621 5.488262 AATCTGCTTTGTTTGGCCTTTAT 57.512 34.783 3.32 0.00 0.00 1.40
4406 4622 4.255833 TCTGCTTTGTTTGGCCTTTATG 57.744 40.909 3.32 0.00 0.00 1.90
4407 4623 3.640967 TCTGCTTTGTTTGGCCTTTATGT 59.359 39.130 3.32 0.00 0.00 2.29
4408 4624 3.988819 TGCTTTGTTTGGCCTTTATGTC 58.011 40.909 3.32 0.00 0.00 3.06
4409 4625 3.244044 TGCTTTGTTTGGCCTTTATGTCC 60.244 43.478 3.32 0.00 0.00 4.02
4410 4626 3.864540 GCTTTGTTTGGCCTTTATGTCCC 60.865 47.826 3.32 0.00 0.00 4.46
4411 4627 2.685106 TGTTTGGCCTTTATGTCCCA 57.315 45.000 3.32 0.00 0.00 4.37
4412 4628 3.182887 TGTTTGGCCTTTATGTCCCAT 57.817 42.857 3.32 0.00 0.00 4.00
4413 4629 3.096092 TGTTTGGCCTTTATGTCCCATC 58.904 45.455 3.32 0.00 0.00 3.51
4414 4630 3.245586 TGTTTGGCCTTTATGTCCCATCT 60.246 43.478 3.32 0.00 0.00 2.90
4415 4631 2.734755 TGGCCTTTATGTCCCATCTG 57.265 50.000 3.32 0.00 0.00 2.90
4416 4632 1.322442 GGCCTTTATGTCCCATCTGC 58.678 55.000 0.00 0.00 0.00 4.26
4417 4633 1.410083 GGCCTTTATGTCCCATCTGCA 60.410 52.381 0.00 0.00 0.00 4.41
4418 4634 2.590821 GCCTTTATGTCCCATCTGCAT 58.409 47.619 0.00 0.00 0.00 3.96
4419 4635 3.498481 GGCCTTTATGTCCCATCTGCATA 60.498 47.826 0.00 0.00 0.00 3.14
4420 4636 3.755378 GCCTTTATGTCCCATCTGCATAG 59.245 47.826 0.00 0.00 0.00 2.23
4421 4637 4.747931 GCCTTTATGTCCCATCTGCATAGT 60.748 45.833 0.00 0.00 0.00 2.12
4422 4638 5.380043 CCTTTATGTCCCATCTGCATAGTT 58.620 41.667 0.00 0.00 0.00 2.24
4423 4639 5.829924 CCTTTATGTCCCATCTGCATAGTTT 59.170 40.000 0.00 0.00 0.00 2.66
4424 4640 6.998074 CCTTTATGTCCCATCTGCATAGTTTA 59.002 38.462 0.00 0.00 0.00 2.01
4425 4641 7.041098 CCTTTATGTCCCATCTGCATAGTTTAC 60.041 40.741 0.00 0.00 0.00 2.01
4426 4642 4.835284 TGTCCCATCTGCATAGTTTACA 57.165 40.909 0.00 0.00 0.00 2.41
4427 4643 4.513442 TGTCCCATCTGCATAGTTTACAC 58.487 43.478 0.00 0.00 0.00 2.90
4428 4644 4.019771 TGTCCCATCTGCATAGTTTACACA 60.020 41.667 0.00 0.00 0.00 3.72
4429 4645 4.572389 GTCCCATCTGCATAGTTTACACAG 59.428 45.833 0.00 0.00 0.00 3.66
4430 4646 4.469586 TCCCATCTGCATAGTTTACACAGA 59.530 41.667 0.00 0.00 41.28 3.41
4431 4647 4.572389 CCCATCTGCATAGTTTACACAGAC 59.428 45.833 0.00 0.00 39.97 3.51
4432 4648 5.423015 CCATCTGCATAGTTTACACAGACT 58.577 41.667 0.00 0.00 39.97 3.24
4433 4649 6.406961 CCCATCTGCATAGTTTACACAGACTA 60.407 42.308 0.00 0.00 39.97 2.59
4434 4650 7.212976 CCATCTGCATAGTTTACACAGACTAT 58.787 38.462 0.00 0.00 39.97 2.12
4435 4651 8.360390 CCATCTGCATAGTTTACACAGACTATA 58.640 37.037 0.00 0.00 39.97 1.31
4436 4652 9.920133 CATCTGCATAGTTTACACAGACTATAT 57.080 33.333 0.00 0.00 39.97 0.86
4437 4653 9.920133 ATCTGCATAGTTTACACAGACTATATG 57.080 33.333 0.00 0.00 39.97 1.78
4438 4654 8.360390 TCTGCATAGTTTACACAGACTATATGG 58.640 37.037 0.00 0.00 37.06 2.74
4439 4655 6.929049 TGCATAGTTTACACAGACTATATGGC 59.071 38.462 0.00 0.00 37.06 4.40
4455 4671 5.937975 ATATGGCTTAAACAGTTTGGCAT 57.062 34.783 21.76 21.76 44.19 4.40
4456 4672 3.383620 TGGCTTAAACAGTTTGGCATG 57.616 42.857 20.14 0.00 0.00 4.06
4486 4702 7.064847 TGGCAATTGTATCAAATTTGCTTCATC 59.935 33.333 13.54 1.91 0.00 2.92
4489 4705 8.649841 CAATTGTATCAAATTTGCTTCATCGTT 58.350 29.630 13.54 2.11 0.00 3.85
4522 4738 1.002544 GCATATGTAGGTCCTCTGGGC 59.997 57.143 4.29 0.00 0.00 5.36
4531 4747 3.400928 CCTCTGGGCAGCAGAGCT 61.401 66.667 13.44 0.00 43.47 4.09
4659 4876 2.642311 TCACTGATGCCTTCCCTTGTTA 59.358 45.455 0.00 0.00 0.00 2.41
4720 4937 9.099071 ACTGATATCTTATAAGAATGTCTGGCT 57.901 33.333 18.79 2.35 38.77 4.75
4723 4940 6.874288 ATCTTATAAGAATGTCTGGCTTGC 57.126 37.500 18.79 0.00 38.77 4.01
4858 5075 1.555075 GACAGCCCCACAGTATCTTCA 59.445 52.381 0.00 0.00 0.00 3.02
4871 5088 7.246311 CACAGTATCTTCATTGTTGTGATTCC 58.754 38.462 0.00 0.00 37.27 3.01
4872 5089 6.092670 ACAGTATCTTCATTGTTGTGATTCCG 59.907 38.462 0.00 0.00 0.00 4.30
5052 5269 5.399038 CCTCCTCTTTGGCCCATTTCTAATA 60.399 44.000 0.00 0.00 35.26 0.98
5082 5299 6.207928 TCAAATGTTGTTGTTGCTGATACTG 58.792 36.000 0.00 0.00 0.00 2.74
5106 5323 2.519302 GTGTGGCTGGTTGGTGCT 60.519 61.111 0.00 0.00 0.00 4.40
5107 5324 2.519063 TGTGGCTGGTTGGTGCTG 60.519 61.111 0.00 0.00 0.00 4.41
5221 5438 0.941463 GCGCCGTATGGATGAGACAG 60.941 60.000 4.73 0.00 37.49 3.51
5278 5502 6.037172 TCTCTTGAACTCTGTTTTGTACTTGC 59.963 38.462 0.00 0.00 0.00 4.01
5297 5521 3.609853 TGCACTGATTGGGTTAGATCAC 58.390 45.455 0.00 0.00 0.00 3.06
5323 5547 5.128919 GTCAATGCTGATTGGGTTAGAGAT 58.871 41.667 0.00 0.00 39.68 2.75
5394 6413 3.695830 TTCTGTGGTCCAGGAACATAC 57.304 47.619 11.43 0.00 41.83 2.39
5495 6621 1.073284 GGGCTAGAGAGGACTCGATCT 59.927 57.143 0.00 0.00 46.64 2.75
5640 6795 6.866770 CACAATCTCATTGCAATGTTTTCTCT 59.133 34.615 32.67 13.59 43.98 3.10
5757 6912 4.464008 TCCCCATCATTGCAATAAGAGAC 58.536 43.478 12.53 0.00 0.00 3.36
5866 7021 1.672737 GCCAATGCCAGGTAAAACTGC 60.673 52.381 0.00 0.00 37.16 4.40
5867 7022 1.895131 CCAATGCCAGGTAAAACTGCT 59.105 47.619 0.00 0.00 37.16 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.329379 GCTGTCGTGGTTCTAAGTCTG 58.671 52.381 0.00 0.00 0.00 3.51
1 2 1.068472 CGCTGTCGTGGTTCTAAGTCT 60.068 52.381 0.00 0.00 0.00 3.24
2 3 1.337821 CGCTGTCGTGGTTCTAAGTC 58.662 55.000 0.00 0.00 0.00 3.01
3 4 0.666577 GCGCTGTCGTGGTTCTAAGT 60.667 55.000 0.00 0.00 38.14 2.24
4 5 1.352156 GGCGCTGTCGTGGTTCTAAG 61.352 60.000 7.64 0.00 38.14 2.18
5 6 1.373748 GGCGCTGTCGTGGTTCTAA 60.374 57.895 7.64 0.00 38.14 2.10
6 7 2.260434 GGCGCTGTCGTGGTTCTA 59.740 61.111 7.64 0.00 38.14 2.10
7 8 4.681978 GGGCGCTGTCGTGGTTCT 62.682 66.667 7.64 0.00 38.14 3.01
138 147 1.215647 CCTCCTCGAAACCCGACAG 59.784 63.158 0.00 0.00 43.23 3.51
356 365 3.860930 ATGCGCCGGTTTTGGGTCT 62.861 57.895 4.18 0.00 0.00 3.85
365 374 4.341502 GCACAAACATGCGCCGGT 62.342 61.111 4.18 0.00 35.50 5.28
380 389 0.960364 GAGCCAACCCATTTCGAGCA 60.960 55.000 0.00 0.00 0.00 4.26
394 403 1.890041 CCGTTTTGTGTCCGAGCCA 60.890 57.895 0.00 0.00 0.00 4.75
398 407 0.531090 CTGGTCCGTTTTGTGTCCGA 60.531 55.000 0.00 0.00 0.00 4.55
445 454 3.949113 AGGTAAAAGAAACAAACGAGGCA 59.051 39.130 0.00 0.00 0.00 4.75
458 467 2.364970 TCCGTCCGTTTGAGGTAAAAGA 59.635 45.455 0.00 0.00 30.52 2.52
556 566 2.829003 CCGCCGGAGTAGCTGAGA 60.829 66.667 5.05 0.00 0.00 3.27
626 636 1.796415 AGAGTAATAGGGAGGAGGGGG 59.204 57.143 0.00 0.00 0.00 5.40
629 639 2.451273 TGGGAGAGTAATAGGGAGGAGG 59.549 54.545 0.00 0.00 0.00 4.30
630 640 3.502356 GTGGGAGAGTAATAGGGAGGAG 58.498 54.545 0.00 0.00 0.00 3.69
631 641 2.179424 GGTGGGAGAGTAATAGGGAGGA 59.821 54.545 0.00 0.00 0.00 3.71
718 729 1.112315 CGTGAGGGAGGGATCTGAGG 61.112 65.000 0.00 0.00 0.00 3.86
719 730 1.743321 GCGTGAGGGAGGGATCTGAG 61.743 65.000 0.00 0.00 0.00 3.35
1259 1285 5.779771 ACCAAACATAATTGTCACCATTCCT 59.220 36.000 0.00 0.00 34.06 3.36
1269 1295 8.574251 TGCATAGAAGTACCAAACATAATTGT 57.426 30.769 0.00 0.00 37.82 2.71
1304 1331 8.092521 AGAAGCGATGAGGAATTACATAATTG 57.907 34.615 1.60 0.00 36.13 2.32
1318 1345 4.926238 AGAGTTACAACAAGAAGCGATGAG 59.074 41.667 0.00 0.00 0.00 2.90
1319 1346 4.686091 CAGAGTTACAACAAGAAGCGATGA 59.314 41.667 0.00 0.00 0.00 2.92
1324 1351 5.273944 CCAAACAGAGTTACAACAAGAAGC 58.726 41.667 0.00 0.00 0.00 3.86
1326 1353 5.258051 ACCCAAACAGAGTTACAACAAGAA 58.742 37.500 0.00 0.00 0.00 2.52
1338 1365 3.887621 TCCGATAGAACCCAAACAGAG 57.112 47.619 0.00 0.00 39.76 3.35
1346 1373 2.228059 TCTCACGATCCGATAGAACCC 58.772 52.381 0.00 0.00 39.76 4.11
1351 1378 7.920738 TGTATGAATATCTCACGATCCGATAG 58.079 38.462 0.00 0.00 36.69 2.08
1355 1382 7.818493 ATTTGTATGAATATCTCACGATCCG 57.182 36.000 0.00 0.00 36.69 4.18
1402 1429 8.019669 GCAGCATATACTAAAAGGTGAATGATG 58.980 37.037 0.00 0.00 34.87 3.07
1468 1496 5.759059 AGGATGGAATTTCTGCAATCAGTA 58.241 37.500 0.00 0.00 41.10 2.74
1511 1539 6.520061 CGAACACCATCCCCTATGTGTTATAT 60.520 42.308 6.83 0.00 38.64 0.86
1512 1540 5.221561 CGAACACCATCCCCTATGTGTTATA 60.222 44.000 6.83 0.00 38.64 0.98
1513 1541 4.444306 CGAACACCATCCCCTATGTGTTAT 60.444 45.833 6.83 0.00 38.64 1.89
1514 1542 3.118555 CGAACACCATCCCCTATGTGTTA 60.119 47.826 6.83 0.00 38.64 2.41
1515 1543 2.355716 CGAACACCATCCCCTATGTGTT 60.356 50.000 6.58 6.58 39.94 3.32
1518 1546 0.180406 GCGAACACCATCCCCTATGT 59.820 55.000 0.00 0.00 33.34 2.29
1532 1560 3.124806 GCTAAACTCCAAGGTAAGCGAAC 59.875 47.826 0.00 0.00 0.00 3.95
1542 1570 3.938963 TGCCTAAATCGCTAAACTCCAAG 59.061 43.478 0.00 0.00 0.00 3.61
1557 1585 4.142049 CCCACTTTTCAGTTGTTGCCTAAA 60.142 41.667 0.00 0.00 0.00 1.85
1614 1727 8.454106 CAACATGGTTTGTTTTTCACCATTTTA 58.546 29.630 0.00 0.00 46.51 1.52
1629 1742 7.489113 GGTAATGATTTAGAGCAACATGGTTTG 59.511 37.037 0.00 0.00 0.00 2.93
1663 1778 2.936498 CTGGGTAGTAAACTGAATGCCG 59.064 50.000 0.00 0.00 0.00 5.69
1673 1788 2.905246 TGCAGTACCCTGGGTAGTAAA 58.095 47.619 28.49 18.39 39.56 2.01
1732 1848 7.676683 ACTACATGAGGTTACTGATTGGTAT 57.323 36.000 0.00 0.00 0.00 2.73
1771 1887 2.166870 TGGCATCAAACCAATCATGCTC 59.833 45.455 2.99 0.00 41.25 4.26
1772 1888 2.181125 TGGCATCAAACCAATCATGCT 58.819 42.857 2.99 0.00 41.25 3.79
1773 1889 2.676632 TGGCATCAAACCAATCATGC 57.323 45.000 0.00 0.00 40.85 4.06
1774 1890 5.943706 TTTTTGGCATCAAACCAATCATG 57.056 34.783 0.00 0.00 46.25 3.07
1775 1891 6.071840 CCAATTTTTGGCATCAAACCAATCAT 60.072 34.615 0.00 0.00 46.25 2.45
1776 1892 5.241064 CCAATTTTTGGCATCAAACCAATCA 59.759 36.000 0.00 0.00 46.25 2.57
1777 1893 5.701855 CCAATTTTTGGCATCAAACCAATC 58.298 37.500 0.00 0.00 46.25 2.67
1778 1894 5.708877 CCAATTTTTGGCATCAAACCAAT 57.291 34.783 0.00 0.00 46.25 3.16
1791 1907 3.238441 GCACAATGCATGCCAATTTTTG 58.762 40.909 16.68 11.28 44.26 2.44
1792 1908 3.562567 GCACAATGCATGCCAATTTTT 57.437 38.095 16.68 0.00 44.26 1.94
1813 1929 6.127140 ACCTACCAAGTAGTAGCCAATAGTTG 60.127 42.308 0.90 0.90 38.74 3.16
1814 1930 5.962641 ACCTACCAAGTAGTAGCCAATAGTT 59.037 40.000 1.40 0.00 38.74 2.24
1815 1931 5.526434 ACCTACCAAGTAGTAGCCAATAGT 58.474 41.667 1.40 0.00 38.74 2.12
1816 1932 6.481434 AACCTACCAAGTAGTAGCCAATAG 57.519 41.667 1.40 0.00 38.74 1.73
1817 1933 7.352079 GTAACCTACCAAGTAGTAGCCAATA 57.648 40.000 1.40 0.00 38.74 1.90
1818 1934 6.231258 GTAACCTACCAAGTAGTAGCCAAT 57.769 41.667 1.40 0.00 38.74 3.16
1819 1935 5.665916 GTAACCTACCAAGTAGTAGCCAA 57.334 43.478 1.40 0.00 38.74 4.52
1822 1938 6.378694 ACTCGGTAACCTACCAAGTAGTAGC 61.379 48.000 3.86 0.00 44.01 3.58
1823 1939 5.189180 ACTCGGTAACCTACCAAGTAGTAG 58.811 45.833 3.86 0.00 44.01 2.57
1824 1940 5.179452 ACTCGGTAACCTACCAAGTAGTA 57.821 43.478 3.86 0.00 44.01 1.82
1825 1941 4.039603 ACTCGGTAACCTACCAAGTAGT 57.960 45.455 3.86 0.00 44.01 2.73
1826 1942 4.219288 ACAACTCGGTAACCTACCAAGTAG 59.781 45.833 0.00 0.00 45.04 2.57
1827 1943 4.151883 ACAACTCGGTAACCTACCAAGTA 58.848 43.478 0.00 0.00 45.04 2.24
1832 1948 3.582780 CAAGACAACTCGGTAACCTACC 58.417 50.000 0.00 0.00 45.52 3.18
1833 1949 2.991866 GCAAGACAACTCGGTAACCTAC 59.008 50.000 0.00 0.00 0.00 3.18
1834 1950 2.028748 GGCAAGACAACTCGGTAACCTA 60.029 50.000 0.00 0.00 0.00 3.08
1835 1951 1.270678 GGCAAGACAACTCGGTAACCT 60.271 52.381 0.00 0.00 0.00 3.50
1836 1952 1.154197 GGCAAGACAACTCGGTAACC 58.846 55.000 0.00 0.00 0.00 2.85
1837 1953 2.165319 AGGCAAGACAACTCGGTAAC 57.835 50.000 0.00 0.00 0.00 2.50
1838 1954 3.767673 AGATAGGCAAGACAACTCGGTAA 59.232 43.478 0.00 0.00 0.00 2.85
1839 1955 3.362706 AGATAGGCAAGACAACTCGGTA 58.637 45.455 0.00 0.00 0.00 4.02
1840 1956 2.166664 GAGATAGGCAAGACAACTCGGT 59.833 50.000 0.00 0.00 0.00 4.69
1841 1957 2.166459 TGAGATAGGCAAGACAACTCGG 59.834 50.000 0.00 0.00 0.00 4.63
1842 1958 3.182967 GTGAGATAGGCAAGACAACTCG 58.817 50.000 0.00 0.00 0.00 4.18
1843 1959 3.929610 GTGTGAGATAGGCAAGACAACTC 59.070 47.826 0.00 0.00 0.00 3.01
1844 1960 3.324846 TGTGTGAGATAGGCAAGACAACT 59.675 43.478 0.00 0.00 0.00 3.16
1845 1961 3.664107 TGTGTGAGATAGGCAAGACAAC 58.336 45.455 0.00 0.00 0.00 3.32
1846 1962 4.350368 TTGTGTGAGATAGGCAAGACAA 57.650 40.909 0.00 0.00 0.00 3.18
1847 1963 4.202357 ACTTTGTGTGAGATAGGCAAGACA 60.202 41.667 0.00 0.00 0.00 3.41
1848 1964 4.319177 ACTTTGTGTGAGATAGGCAAGAC 58.681 43.478 0.00 0.00 0.00 3.01
1849 1965 4.623932 ACTTTGTGTGAGATAGGCAAGA 57.376 40.909 0.00 0.00 0.00 3.02
1850 1966 4.614535 GCAACTTTGTGTGAGATAGGCAAG 60.615 45.833 0.00 0.00 0.00 4.01
1851 1967 3.253188 GCAACTTTGTGTGAGATAGGCAA 59.747 43.478 0.00 0.00 0.00 4.52
1852 1968 2.813754 GCAACTTTGTGTGAGATAGGCA 59.186 45.455 0.00 0.00 0.00 4.75
1853 1969 2.162408 GGCAACTTTGTGTGAGATAGGC 59.838 50.000 0.00 0.00 0.00 3.93
1854 1970 3.411446 TGGCAACTTTGTGTGAGATAGG 58.589 45.455 0.00 0.00 37.61 2.57
1855 1971 5.633830 ATTGGCAACTTTGTGTGAGATAG 57.366 39.130 0.00 0.00 37.61 2.08
1856 1972 6.237901 ACTATTGGCAACTTTGTGTGAGATA 58.762 36.000 0.00 0.00 37.61 1.98
1857 1973 5.072741 ACTATTGGCAACTTTGTGTGAGAT 58.927 37.500 0.00 0.00 37.61 2.75
1858 1974 4.460263 ACTATTGGCAACTTTGTGTGAGA 58.540 39.130 0.00 0.00 37.61 3.27
1859 1975 4.836125 ACTATTGGCAACTTTGTGTGAG 57.164 40.909 0.00 0.00 37.61 3.51
1860 1976 4.202101 CCAACTATTGGCAACTTTGTGTGA 60.202 41.667 0.00 0.00 45.17 3.58
1861 1977 4.050553 CCAACTATTGGCAACTTTGTGTG 58.949 43.478 0.00 0.00 45.17 3.82
1862 1978 4.320608 CCAACTATTGGCAACTTTGTGT 57.679 40.909 0.00 0.00 45.17 3.72
1874 1990 6.697019 GCAATACCAATACTTGCCAACTATTG 59.303 38.462 8.86 8.86 39.42 1.90
1875 1991 6.805713 GCAATACCAATACTTGCCAACTATT 58.194 36.000 0.00 0.00 39.42 1.73
1876 1992 6.391227 GCAATACCAATACTTGCCAACTAT 57.609 37.500 0.00 0.00 39.42 2.12
1877 1993 5.828299 GCAATACCAATACTTGCCAACTA 57.172 39.130 0.00 0.00 39.42 2.24
1878 1994 4.718940 GCAATACCAATACTTGCCAACT 57.281 40.909 0.00 0.00 39.42 3.16
1922 2038 2.754552 GAGTATGATTGGTTTGCTGCCA 59.245 45.455 0.00 0.00 0.00 4.92
1923 2039 2.223340 CGAGTATGATTGGTTTGCTGCC 60.223 50.000 0.00 0.00 0.00 4.85
1924 2040 2.677836 TCGAGTATGATTGGTTTGCTGC 59.322 45.455 0.00 0.00 0.00 5.25
1925 2041 4.944962 TTCGAGTATGATTGGTTTGCTG 57.055 40.909 0.00 0.00 0.00 4.41
1926 2042 5.677091 GCAATTCGAGTATGATTGGTTTGCT 60.677 40.000 8.44 0.00 34.47 3.91
1927 2043 4.500477 GCAATTCGAGTATGATTGGTTTGC 59.500 41.667 8.44 0.00 0.00 3.68
1928 2044 5.740569 CAGCAATTCGAGTATGATTGGTTTG 59.259 40.000 8.37 0.00 31.62 2.93
1929 2045 5.647658 TCAGCAATTCGAGTATGATTGGTTT 59.352 36.000 8.37 0.00 31.62 3.27
1930 2046 5.065218 GTCAGCAATTCGAGTATGATTGGTT 59.935 40.000 8.37 0.00 31.62 3.67
1931 2047 4.572389 GTCAGCAATTCGAGTATGATTGGT 59.428 41.667 5.81 5.81 33.87 3.67
1932 2048 4.024556 GGTCAGCAATTCGAGTATGATTGG 60.025 45.833 8.44 0.00 0.00 3.16
1933 2049 4.813161 AGGTCAGCAATTCGAGTATGATTG 59.187 41.667 2.98 2.98 0.00 2.67
1934 2050 5.028549 AGGTCAGCAATTCGAGTATGATT 57.971 39.130 0.00 0.00 0.00 2.57
1935 2051 4.679373 AGGTCAGCAATTCGAGTATGAT 57.321 40.909 0.00 0.00 0.00 2.45
1936 2052 4.471904 AAGGTCAGCAATTCGAGTATGA 57.528 40.909 0.00 0.00 0.00 2.15
1937 2053 5.985530 TCATAAGGTCAGCAATTCGAGTATG 59.014 40.000 0.00 0.00 0.00 2.39
1938 2054 6.161855 TCATAAGGTCAGCAATTCGAGTAT 57.838 37.500 0.00 0.00 0.00 2.12
1939 2055 5.592104 TCATAAGGTCAGCAATTCGAGTA 57.408 39.130 0.00 0.00 0.00 2.59
1940 2056 4.471904 TCATAAGGTCAGCAATTCGAGT 57.528 40.909 0.00 0.00 0.00 4.18
1941 2057 5.801350 TTTCATAAGGTCAGCAATTCGAG 57.199 39.130 0.00 0.00 0.00 4.04
1942 2058 6.757897 ATTTTCATAAGGTCAGCAATTCGA 57.242 33.333 0.00 0.00 0.00 3.71
1943 2059 8.961092 CATAATTTTCATAAGGTCAGCAATTCG 58.039 33.333 0.00 0.00 0.00 3.34
1944 2060 9.807649 ACATAATTTTCATAAGGTCAGCAATTC 57.192 29.630 0.00 0.00 0.00 2.17
1968 2084 4.142093 GGACGTGCTCTAACCCTATTTACA 60.142 45.833 0.00 0.00 0.00 2.41
1978 2094 7.751348 CAGTAATATAGATGGACGTGCTCTAAC 59.249 40.741 8.99 7.94 0.00 2.34
2082 2198 5.982890 ATCAAATCCAGTTTTCCGAACAT 57.017 34.783 0.00 0.00 0.00 2.71
2083 2199 6.234920 TCTATCAAATCCAGTTTTCCGAACA 58.765 36.000 0.00 0.00 0.00 3.18
2084 2200 6.594159 TCTCTATCAAATCCAGTTTTCCGAAC 59.406 38.462 0.00 0.00 0.00 3.95
2088 2204 5.882557 TGCTCTCTATCAAATCCAGTTTTCC 59.117 40.000 0.00 0.00 0.00 3.13
2108 2224 6.986817 TGTAGTAATGAGAAGGCTTTATGCTC 59.013 38.462 0.00 3.88 42.39 4.26
2147 2263 4.908601 TTTCCCTGAAAGATCACAGCTA 57.091 40.909 0.00 0.00 34.07 3.32
2148 2264 3.795688 TTTCCCTGAAAGATCACAGCT 57.204 42.857 0.00 0.00 34.07 4.24
2285 2401 5.602458 CATAATGATGGACACAAGGATCG 57.398 43.478 0.00 0.00 0.00 3.69
2305 2421 6.527423 ACAATTCATCAACAAAAGCTTCCAT 58.473 32.000 0.00 0.00 0.00 3.41
2388 2504 3.815962 TCCGTGATTCGTCAAATTTTCCA 59.184 39.130 0.00 0.00 37.94 3.53
2421 2537 5.365895 ACCGGCTAAAACTATCCAGAACTAT 59.634 40.000 0.00 0.00 0.00 2.12
2425 2541 3.869065 CACCGGCTAAAACTATCCAGAA 58.131 45.455 0.00 0.00 0.00 3.02
2441 2575 5.065859 TGTTTAGAAATATGTGATGCACCGG 59.934 40.000 0.00 0.00 32.73 5.28
2449 2583 8.836268 AACGGTAAGTGTTTAGAAATATGTGA 57.164 30.769 0.00 0.00 0.00 3.58
2470 2604 6.359617 CAGCAAATTAGTCAACTGTAAAACGG 59.640 38.462 0.00 0.00 0.00 4.44
2472 2606 8.531530 CAACAGCAAATTAGTCAACTGTAAAAC 58.468 33.333 0.00 0.00 37.38 2.43
2544 2678 2.750814 TCATAGACAGCATCCAGTGGA 58.249 47.619 15.88 15.88 35.55 4.02
2602 2736 8.647143 AAAAATGAACAAGGACATACACAAAG 57.353 30.769 0.00 0.00 0.00 2.77
2628 2762 7.512130 ACAATGTTCATCAGAGAGCCATAATA 58.488 34.615 0.00 0.00 0.00 0.98
2630 2764 5.748402 ACAATGTTCATCAGAGAGCCATAA 58.252 37.500 0.00 0.00 0.00 1.90
2689 2823 1.062587 GTCCAATTTGACGATCCTGCG 59.937 52.381 0.00 0.00 37.29 5.18
2794 2940 8.033626 GCACTCACTGTTATACTACTAACCTTT 58.966 37.037 0.00 0.00 31.83 3.11
2804 2950 6.154534 TCCTAACATGCACTCACTGTTATACT 59.845 38.462 9.61 0.00 35.47 2.12
2807 2953 5.046304 AGTCCTAACATGCACTCACTGTTAT 60.046 40.000 9.61 0.00 35.47 1.89
2813 2959 4.188247 TGTAGTCCTAACATGCACTCAC 57.812 45.455 0.00 0.00 0.00 3.51
2830 2976 8.964476 AGATGTTATAATTGTGTCCCTTGTAG 57.036 34.615 0.00 0.00 0.00 2.74
2868 3015 4.733165 AGTTTGGAAGGGGTAAGGTTTAC 58.267 43.478 0.00 0.00 0.00 2.01
2874 3021 3.568430 GTGTTGAGTTTGGAAGGGGTAAG 59.432 47.826 0.00 0.00 0.00 2.34
2895 3042 2.319136 TTCAAGGTACGTGCAACAGT 57.681 45.000 5.86 0.00 37.84 3.55
2897 3044 3.628032 TCAAATTCAAGGTACGTGCAACA 59.372 39.130 5.86 0.00 37.84 3.33
2904 3051 3.408634 ACCACCTCAAATTCAAGGTACG 58.591 45.455 10.51 7.36 44.13 3.67
2907 3054 4.407365 CCTTACCACCTCAAATTCAAGGT 58.593 43.478 6.00 6.00 46.94 3.50
2928 3075 8.588472 AGAATACCACTAATACGTTATTACCCC 58.412 37.037 0.00 0.00 0.00 4.95
2934 3081 9.321562 CCACAAAGAATACCACTAATACGTTAT 57.678 33.333 0.00 0.00 0.00 1.89
2943 3090 5.484715 GCACTACCACAAAGAATACCACTA 58.515 41.667 0.00 0.00 0.00 2.74
2953 3100 2.148916 TGACTCGCACTACCACAAAG 57.851 50.000 0.00 0.00 0.00 2.77
2956 3103 0.530744 GGATGACTCGCACTACCACA 59.469 55.000 0.00 0.00 0.00 4.17
2965 3112 2.417719 ACAACAAGAAGGATGACTCGC 58.582 47.619 0.00 0.00 0.00 5.03
2966 3113 9.698309 ATATATTACAACAAGAAGGATGACTCG 57.302 33.333 0.00 0.00 0.00 4.18
2978 3125 8.576442 CCCAAAGGGCTAATATATTACAACAAG 58.424 37.037 0.81 0.00 35.35 3.16
3035 3182 8.980481 ATCGTATTTGTTAAATTGGGAGAGAT 57.020 30.769 0.00 0.00 32.38 2.75
3067 3214 0.111089 GTCAAACTCAAGCTGTCGCG 60.111 55.000 0.00 0.00 42.32 5.87
3070 3217 9.534565 TCATATATTAGTCAAACTCAAGCTGTC 57.465 33.333 0.00 0.00 0.00 3.51
3240 3388 7.064253 AGGTGCTACAAAAATATTGAGTACGAC 59.936 37.037 0.00 0.00 0.00 4.34
3353 3501 4.373156 AACAAAGGAGTAACTGGATGCT 57.627 40.909 0.00 0.00 0.00 3.79
3401 3549 5.316167 GGATGTGCATTACCTGGATTCATA 58.684 41.667 0.00 0.00 0.00 2.15
3435 3583 7.332182 GGAAGGTTACTATATGAATGCTAGCAC 59.668 40.741 22.07 9.17 0.00 4.40
3454 3602 8.004801 CCAGGGAAAAATATAGTATGGAAGGTT 58.995 37.037 0.00 0.00 0.00 3.50
3456 3604 6.434340 GCCAGGGAAAAATATAGTATGGAAGG 59.566 42.308 0.00 0.00 0.00 3.46
3460 3608 5.640147 TGGCCAGGGAAAAATATAGTATGG 58.360 41.667 0.00 0.00 0.00 2.74
3467 3615 4.369872 TGGATTTGGCCAGGGAAAAATAT 58.630 39.130 5.11 0.00 33.10 1.28
3490 3638 9.729281 AAGGTCTCAAATTAAATAGAACGGTAA 57.271 29.630 0.00 0.00 30.83 2.85
3533 3681 8.670521 AGAGGGTAGATCCAAATTTTTGAAAT 57.329 30.769 4.63 0.00 40.55 2.17
3540 3688 5.975988 TGCTAGAGGGTAGATCCAAATTT 57.024 39.130 0.00 0.00 38.11 1.82
3541 3689 5.608437 TCATGCTAGAGGGTAGATCCAAATT 59.392 40.000 0.00 0.00 38.11 1.82
3555 3703 5.527951 ACTTGCATTGAGATTCATGCTAGAG 59.472 40.000 18.28 10.25 42.48 2.43
3592 3740 4.509970 GTCATGTGCACTACAAGTTGTACA 59.490 41.667 19.41 10.89 43.77 2.90
3593 3741 4.509970 TGTCATGTGCACTACAAGTTGTAC 59.490 41.667 19.41 5.34 43.77 2.90
3602 3750 2.414559 GCCAACATGTCATGTGCACTAC 60.415 50.000 19.08 13.70 44.07 2.73
3607 3755 3.507103 TTATGCCAACATGTCATGTGC 57.493 42.857 19.08 18.05 44.07 4.57
3615 3763 7.325694 AGAAAAGAGGATTTTATGCCAACATG 58.674 34.615 0.00 0.00 37.04 3.21
3633 3781 8.996651 AAAAGAAGGTTTGATCCTAGAAAAGA 57.003 30.769 0.00 0.00 36.74 2.52
3662 3810 6.704493 ACTAAAGCTAAAACGAGACAACATGA 59.296 34.615 0.00 0.00 0.00 3.07
3667 3815 6.037830 AGCAAACTAAAGCTAAAACGAGACAA 59.962 34.615 0.00 0.00 39.78 3.18
3674 3822 7.749539 TTCACAAGCAAACTAAAGCTAAAAC 57.250 32.000 0.00 0.00 40.90 2.43
3692 3840 5.711506 ACAGCATTTCCACTATGATTCACAA 59.288 36.000 0.00 0.00 0.00 3.33
3709 3857 3.030668 GCTAAACAAGCCAACAGCATT 57.969 42.857 0.00 0.00 46.25 3.56
3720 3868 3.581024 ATGTGTGGCATGCTAAACAAG 57.419 42.857 28.21 0.00 36.26 3.16
3721 3869 4.056740 CAAATGTGTGGCATGCTAAACAA 58.943 39.130 28.21 13.73 37.96 2.83
3723 3871 2.412770 GCAAATGTGTGGCATGCTAAAC 59.587 45.455 17.01 17.01 37.96 2.01
3726 3874 1.254954 TGCAAATGTGTGGCATGCTA 58.745 45.000 18.92 9.16 37.96 3.49
3727 3875 0.611200 ATGCAAATGTGTGGCATGCT 59.389 45.000 18.92 0.00 45.80 3.79
3728 3876 3.146783 ATGCAAATGTGTGGCATGC 57.853 47.368 9.90 9.90 45.80 4.06
3731 3879 1.046204 TTCCATGCAAATGTGTGGCA 58.954 45.000 0.00 0.00 42.43 4.92
3732 3880 1.001181 AGTTCCATGCAAATGTGTGGC 59.999 47.619 0.00 0.00 0.00 5.01
3733 3881 3.006110 AGAAGTTCCATGCAAATGTGTGG 59.994 43.478 0.00 0.00 0.00 4.17
3734 3882 4.247267 AGAAGTTCCATGCAAATGTGTG 57.753 40.909 0.00 0.00 0.00 3.82
3735 3883 5.536161 ACTTAGAAGTTCCATGCAAATGTGT 59.464 36.000 0.00 0.00 35.21 3.72
3766 3914 4.441356 GGTCAAAGAACTTTTCATGCACCA 60.441 41.667 0.00 0.00 0.00 4.17
3767 3915 4.051237 GGTCAAAGAACTTTTCATGCACC 58.949 43.478 0.00 0.00 0.00 5.01
3770 3918 6.849588 AAATGGTCAAAGAACTTTTCATGC 57.150 33.333 0.00 0.00 0.00 4.06
3786 3934 5.819901 AGCTGAGCAGAGTTAATAAATGGTC 59.180 40.000 7.39 6.45 38.52 4.02
3828 3976 3.664320 TGGCTATGGGGTTCTATCTGAA 58.336 45.455 0.00 0.00 0.00 3.02
3830 3978 4.647564 AATGGCTATGGGGTTCTATCTG 57.352 45.455 0.00 0.00 0.00 2.90
3831 3979 8.644432 AATATAATGGCTATGGGGTTCTATCT 57.356 34.615 0.00 0.00 0.00 1.98
3834 3982 6.889722 GCAAATATAATGGCTATGGGGTTCTA 59.110 38.462 0.00 0.00 0.00 2.10
3841 4016 5.404946 GCAGTGCAAATATAATGGCTATGG 58.595 41.667 11.09 0.00 0.00 2.74
3843 4018 5.327732 AGGCAGTGCAAATATAATGGCTAT 58.672 37.500 18.61 0.00 41.17 2.97
3858 4033 0.253044 TCTAACCCATGAGGCAGTGC 59.747 55.000 6.55 6.55 40.58 4.40
3876 4051 1.501169 GCACCACCTGCAAAACATTC 58.499 50.000 0.00 0.00 46.29 2.67
3899 4074 7.490402 TCAGATGCAATATATGTTAGCGAGATG 59.510 37.037 0.00 0.00 0.00 2.90
3914 4089 6.455360 GGAATTGTCCTTTCAGATGCAATA 57.545 37.500 0.00 0.00 41.24 1.90
3935 4110 8.337118 AGATCTTCAAGAAATATTACCCAGGA 57.663 34.615 0.00 0.00 0.00 3.86
3981 4157 8.804743 CAAATTAATCACAAGCAAAGATAGCTG 58.195 33.333 0.00 0.00 42.53 4.24
3988 4164 7.894376 ACCATCAAATTAATCACAAGCAAAG 57.106 32.000 0.00 0.00 0.00 2.77
4023 4199 2.645838 ACTCATGCCACCACCATATC 57.354 50.000 0.00 0.00 0.00 1.63
4025 4201 1.632920 TGAACTCATGCCACCACCATA 59.367 47.619 0.00 0.00 0.00 2.74
4028 4204 1.589716 GCTGAACTCATGCCACCACC 61.590 60.000 0.00 0.00 0.00 4.61
4029 4205 0.607489 AGCTGAACTCATGCCACCAC 60.607 55.000 0.00 0.00 0.00 4.16
4030 4206 0.983467 TAGCTGAACTCATGCCACCA 59.017 50.000 0.00 0.00 0.00 4.17
4111 4289 9.995003 AATAATGCAAAACAAAGACCTCATTTA 57.005 25.926 0.00 0.00 0.00 1.40
4142 4321 9.921637 ATCAATTTGGCGAAAAGTTAGAAATAA 57.078 25.926 0.00 0.00 0.00 1.40
4148 4327 6.747280 CCTACATCAATTTGGCGAAAAGTTAG 59.253 38.462 0.00 0.00 0.00 2.34
4150 4329 5.010617 ACCTACATCAATTTGGCGAAAAGTT 59.989 36.000 0.00 0.00 0.00 2.66
4158 4337 4.399303 AGCAAGTACCTACATCAATTTGGC 59.601 41.667 0.00 0.00 0.00 4.52
4240 4419 5.577835 TGTCGAAACCATGTTTCTTTTGAG 58.422 37.500 15.39 2.21 0.00 3.02
4244 4423 3.632145 AGCTGTCGAAACCATGTTTCTTT 59.368 39.130 15.39 0.00 0.00 2.52
4253 4432 5.401531 AGATAAGTTAGCTGTCGAAACCA 57.598 39.130 0.00 0.00 0.00 3.67
4283 4463 3.316308 GCACCCATTTATTCTGCTAGGTG 59.684 47.826 0.00 0.00 45.03 4.00
4292 4472 6.593382 TGCAATTTAAGTGCACCCATTTATTC 59.407 34.615 16.16 0.00 46.76 1.75
4347 4560 8.922058 AGTAATGTAACTATGTCACGTTTAGG 57.078 34.615 0.00 0.00 0.00 2.69
4349 4562 8.236586 ACGAGTAATGTAACTATGTCACGTTTA 58.763 33.333 0.00 0.00 0.00 2.01
4350 4563 7.086376 ACGAGTAATGTAACTATGTCACGTTT 58.914 34.615 0.00 0.00 0.00 3.60
4351 4564 6.615088 ACGAGTAATGTAACTATGTCACGTT 58.385 36.000 0.00 0.00 0.00 3.99
4352 4565 6.187125 ACGAGTAATGTAACTATGTCACGT 57.813 37.500 0.00 0.00 0.00 4.49
4353 4566 5.680229 GGACGAGTAATGTAACTATGTCACG 59.320 44.000 0.00 0.00 36.99 4.35
4354 4567 6.558009 TGGACGAGTAATGTAACTATGTCAC 58.442 40.000 0.00 2.99 36.99 3.67
4355 4568 6.762702 TGGACGAGTAATGTAACTATGTCA 57.237 37.500 0.00 0.00 36.99 3.58
4356 4569 6.641314 CCATGGACGAGTAATGTAACTATGTC 59.359 42.308 5.56 0.00 35.64 3.06
4406 4622 4.513442 TGTGTAAACTATGCAGATGGGAC 58.487 43.478 0.00 0.00 0.00 4.46
4407 4623 4.469586 TCTGTGTAAACTATGCAGATGGGA 59.530 41.667 0.00 0.00 32.09 4.37
4408 4624 4.572389 GTCTGTGTAAACTATGCAGATGGG 59.428 45.833 0.00 0.00 38.28 4.00
4409 4625 5.423015 AGTCTGTGTAAACTATGCAGATGG 58.577 41.667 0.00 0.00 38.28 3.51
4410 4626 9.920133 ATATAGTCTGTGTAAACTATGCAGATG 57.080 33.333 0.00 0.00 38.73 2.90
4411 4627 9.920133 CATATAGTCTGTGTAAACTATGCAGAT 57.080 33.333 0.00 0.00 38.73 2.90
4412 4628 8.360390 CCATATAGTCTGTGTAAACTATGCAGA 58.640 37.037 0.00 0.00 38.73 4.26
4413 4629 7.116948 GCCATATAGTCTGTGTAAACTATGCAG 59.883 40.741 0.00 0.00 38.73 4.41
4414 4630 6.929049 GCCATATAGTCTGTGTAAACTATGCA 59.071 38.462 0.00 0.00 38.73 3.96
4415 4631 7.155328 AGCCATATAGTCTGTGTAAACTATGC 58.845 38.462 5.51 1.70 38.73 3.14
4419 4635 9.379791 GTTTAAGCCATATAGTCTGTGTAAACT 57.620 33.333 0.00 0.00 0.00 2.66
4420 4636 9.158233 TGTTTAAGCCATATAGTCTGTGTAAAC 57.842 33.333 0.00 0.00 0.00 2.01
4421 4637 9.378551 CTGTTTAAGCCATATAGTCTGTGTAAA 57.621 33.333 0.00 0.00 0.00 2.01
4422 4638 8.537016 ACTGTTTAAGCCATATAGTCTGTGTAA 58.463 33.333 0.00 0.00 0.00 2.41
4423 4639 8.074613 ACTGTTTAAGCCATATAGTCTGTGTA 57.925 34.615 0.00 0.00 0.00 2.90
4424 4640 6.947464 ACTGTTTAAGCCATATAGTCTGTGT 58.053 36.000 0.00 0.00 0.00 3.72
4425 4641 7.849804 AACTGTTTAAGCCATATAGTCTGTG 57.150 36.000 0.00 0.00 0.00 3.66
4426 4642 7.336931 CCAAACTGTTTAAGCCATATAGTCTGT 59.663 37.037 5.31 0.00 0.00 3.41
4427 4643 7.679638 GCCAAACTGTTTAAGCCATATAGTCTG 60.680 40.741 5.31 0.00 0.00 3.51
4428 4644 6.318900 GCCAAACTGTTTAAGCCATATAGTCT 59.681 38.462 5.31 0.00 0.00 3.24
4429 4645 6.094881 TGCCAAACTGTTTAAGCCATATAGTC 59.905 38.462 18.95 0.00 0.00 2.59
4430 4646 5.949354 TGCCAAACTGTTTAAGCCATATAGT 59.051 36.000 18.95 0.00 0.00 2.12
4431 4647 6.449635 TGCCAAACTGTTTAAGCCATATAG 57.550 37.500 18.95 0.64 0.00 1.31
4432 4648 6.605194 TCATGCCAAACTGTTTAAGCCATATA 59.395 34.615 18.95 6.15 0.00 0.86
4433 4649 5.421693 TCATGCCAAACTGTTTAAGCCATAT 59.578 36.000 18.95 8.21 0.00 1.78
4434 4650 4.769488 TCATGCCAAACTGTTTAAGCCATA 59.231 37.500 18.95 6.69 0.00 2.74
4435 4651 3.577848 TCATGCCAAACTGTTTAAGCCAT 59.422 39.130 18.95 10.99 0.00 4.40
4436 4652 2.961741 TCATGCCAAACTGTTTAAGCCA 59.038 40.909 18.95 9.59 0.00 4.75
4437 4653 3.005791 AGTCATGCCAAACTGTTTAAGCC 59.994 43.478 18.95 8.33 0.00 4.35
4438 4654 4.243007 AGTCATGCCAAACTGTTTAAGC 57.757 40.909 16.34 16.34 0.00 3.09
4439 4655 4.984161 CCAAGTCATGCCAAACTGTTTAAG 59.016 41.667 5.31 2.03 0.00 1.85
4455 4671 6.147492 GCAAATTTGATACAATTGCCAAGTCA 59.853 34.615 22.31 0.33 40.25 3.41
4456 4672 6.369615 AGCAAATTTGATACAATTGCCAAGTC 59.630 34.615 22.31 0.00 45.62 3.01
4463 4679 8.176814 ACGATGAAGCAAATTTGATACAATTG 57.823 30.769 22.31 14.63 0.00 2.32
4466 4682 9.853555 AATAACGATGAAGCAAATTTGATACAA 57.146 25.926 22.31 5.30 0.00 2.41
4486 4702 9.773328 CCTACATATGCATCCAATAAAATAACG 57.227 33.333 0.19 0.00 0.00 3.18
4489 4705 9.461312 GGACCTACATATGCATCCAATAAAATA 57.539 33.333 0.19 0.00 0.00 1.40
4494 4710 6.025539 AGAGGACCTACATATGCATCCAATA 58.974 40.000 0.19 0.00 0.00 1.90
4495 4711 4.848660 AGAGGACCTACATATGCATCCAAT 59.151 41.667 0.19 0.00 0.00 3.16
4637 4854 1.425066 ACAAGGGAAGGCATCAGTGAA 59.575 47.619 0.00 0.00 0.00 3.18
4642 4859 6.039270 CGAAAATATAACAAGGGAAGGCATCA 59.961 38.462 0.00 0.00 0.00 3.07
4645 4862 4.097286 GCGAAAATATAACAAGGGAAGGCA 59.903 41.667 0.00 0.00 0.00 4.75
4646 4863 4.097286 TGCGAAAATATAACAAGGGAAGGC 59.903 41.667 0.00 0.00 0.00 4.35
4659 4876 5.713025 AGTTGCATGTCTTTGCGAAAATAT 58.287 33.333 0.00 0.00 45.77 1.28
4695 4912 9.941325 AAGCCAGACATTCTTATAAGATATCAG 57.059 33.333 15.82 10.17 34.49 2.90
4715 4932 1.817357 TCATCTGTTCAGCAAGCCAG 58.183 50.000 0.00 0.00 0.00 4.85
4720 4937 2.416747 CCGACTTCATCTGTTCAGCAA 58.583 47.619 0.00 0.00 0.00 3.91
4723 4940 2.996621 GTTCCCGACTTCATCTGTTCAG 59.003 50.000 0.00 0.00 0.00 3.02
4816 5033 0.322098 CCGCAAGACCCATGGTGTTA 60.322 55.000 11.73 0.00 37.06 2.41
4858 5075 2.365582 GCCTACCGGAATCACAACAAT 58.634 47.619 9.46 0.00 0.00 2.71
4893 5110 0.676466 AATCAAGCCGCGGTGAATCA 60.676 50.000 28.70 6.56 0.00 2.57
5052 5269 7.660112 TCAGCAACAACAACATTTGAGATAAT 58.340 30.769 0.00 0.00 0.00 1.28
5106 5323 9.968870 TGTATATATATAACACAGTTTGTCGCA 57.031 29.630 3.96 0.00 37.51 5.10
5221 5438 1.890573 TGCTTGTGCAGGGTTAATCCC 60.891 52.381 0.00 3.03 46.44 3.85
5278 5502 4.194640 CCTGTGATCTAACCCAATCAGTG 58.805 47.826 0.00 0.00 32.76 3.66
5297 5521 1.843368 ACCCAATCAGCATTGACCTG 58.157 50.000 0.00 0.00 41.97 4.00
5323 5547 2.496871 CCAAAGGACAGCAATTGCCATA 59.503 45.455 26.45 0.00 43.38 2.74
5394 6413 8.663911 AGCATCTCTTATTCTCTTTCTTTTTCG 58.336 33.333 0.00 0.00 0.00 3.46
5432 6558 0.610232 ACCTCCCATTTGACTGCAGC 60.610 55.000 15.27 7.45 0.00 5.25
5482 6608 0.033601 AGCACCAGATCGAGTCCTCT 60.034 55.000 0.00 0.00 0.00 3.69
5483 6609 0.383949 GAGCACCAGATCGAGTCCTC 59.616 60.000 0.00 0.00 0.00 3.71
5495 6621 4.020617 CGGGCAAGAGGAGCACCA 62.021 66.667 2.07 0.00 38.94 4.17
5520 6646 2.618794 GGATCAGATGTCCTGGGAGAT 58.381 52.381 0.00 0.00 43.12 2.75
5621 6776 4.921515 CCACAGAGAAAACATTGCAATGAG 59.078 41.667 38.99 19.22 39.67 2.90
5624 6779 4.262164 GGACCACAGAGAAAACATTGCAAT 60.262 41.667 5.99 5.99 0.00 3.56
5671 6826 6.471233 TGAAACATAACAATGTTGGGAACA 57.529 33.333 9.15 0.00 43.29 3.18
5672 6827 6.073819 GCTTGAAACATAACAATGTTGGGAAC 60.074 38.462 9.15 0.00 43.29 3.62
5673 6828 5.988561 GCTTGAAACATAACAATGTTGGGAA 59.011 36.000 9.15 0.00 43.29 3.97
5674 6829 5.069648 TGCTTGAAACATAACAATGTTGGGA 59.930 36.000 9.15 0.00 43.29 4.37
5675 6830 5.295950 TGCTTGAAACATAACAATGTTGGG 58.704 37.500 9.15 3.21 43.29 4.12
5676 6831 6.424509 ACATGCTTGAAACATAACAATGTTGG 59.575 34.615 9.15 3.57 43.29 3.77
5677 6832 7.410800 ACATGCTTGAAACATAACAATGTTG 57.589 32.000 9.15 0.00 43.29 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.