Multiple sequence alignment - TraesCS7B01G257400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G257400 chr7B 100.000 3158 0 0 1 3158 477781388 477778231 0.000000e+00 5832.0
1 TraesCS7B01G257400 chr7B 90.789 380 32 3 2488 2865 129963089 129962711 3.640000e-139 505.0
2 TraesCS7B01G257400 chr7D 91.242 2078 105 33 456 2482 454072903 454070852 0.000000e+00 2758.0
3 TraesCS7B01G257400 chr7D 95.364 302 14 0 2857 3158 454070855 454070554 6.130000e-132 481.0
4 TraesCS7B01G257400 chr7D 85.321 109 7 7 154 261 454073255 454073155 1.550000e-18 104.0
5 TraesCS7B01G257400 chr7D 97.778 45 1 0 42 86 454073325 454073281 9.390000e-11 78.7
6 TraesCS7B01G257400 chr7A 87.871 2020 115 48 501 2482 543783389 543785316 0.000000e+00 2254.0
7 TraesCS7B01G257400 chr7A 87.831 189 12 5 2856 3041 543785312 543785492 8.870000e-51 211.0
8 TraesCS7B01G257400 chr7A 97.778 45 1 0 42 86 543782943 543782987 9.390000e-11 78.7
9 TraesCS7B01G257400 chr7A 91.837 49 3 1 2 49 678754488 678754536 2.030000e-07 67.6
10 TraesCS7B01G257400 chr5A 92.183 371 27 2 2488 2856 445126579 445126949 1.000000e-144 523.0
11 TraesCS7B01G257400 chr1B 91.076 381 29 5 2488 2865 584366343 584366721 7.810000e-141 510.0
12 TraesCS7B01G257400 chr1B 87.037 54 4 2 2 55 634500105 634500055 1.220000e-04 58.4
13 TraesCS7B01G257400 chr2B 91.375 371 30 2 2488 2856 481266144 481265774 1.010000e-139 507.0
14 TraesCS7B01G257400 chr2B 91.105 371 31 2 2488 2856 358287684 358287314 4.700000e-138 501.0
15 TraesCS7B01G257400 chr2B 90.289 381 34 3 2488 2865 656879659 656880039 2.190000e-136 496.0
16 TraesCS7B01G257400 chr2B 100.000 37 0 0 1 37 387151994 387152030 5.650000e-08 69.4
17 TraesCS7B01G257400 chr2B 95.122 41 2 0 2 42 699181624 699181584 7.310000e-07 65.8
18 TraesCS7B01G257400 chr5B 91.081 370 30 3 2489 2856 595832872 595832504 6.080000e-137 497.0
19 TraesCS7B01G257400 chr3B 91.081 370 30 3 2488 2855 640862696 640863064 6.080000e-137 497.0
20 TraesCS7B01G257400 chr3B 90.026 381 34 4 2488 2865 500593676 500593297 1.020000e-134 490.0
21 TraesCS7B01G257400 chr3B 90.385 52 3 2 2 51 726508462 726508411 2.030000e-07 67.6
22 TraesCS7B01G257400 chr3A 89.091 55 4 2 2 55 742380671 742380724 2.030000e-07 67.6
23 TraesCS7B01G257400 chr6B 95.238 42 0 2 2 41 633800893 633800852 7.310000e-07 65.8
24 TraesCS7B01G257400 chr5D 93.333 45 1 2 2 45 30812164 30812207 7.310000e-07 65.8
25 TraesCS7B01G257400 chr2A 95.238 42 1 1 2 42 90579297 90579256 7.310000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G257400 chr7B 477778231 477781388 3157 True 5832.000 5832 100.00000 1 3158 1 chr7B.!!$R2 3157
1 TraesCS7B01G257400 chr7D 454070554 454073325 2771 True 855.425 2758 92.42625 42 3158 4 chr7D.!!$R1 3116
2 TraesCS7B01G257400 chr7A 543782943 543785492 2549 False 847.900 2254 91.16000 42 3041 3 chr7A.!!$F2 2999

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
239 249 0.032952 TCCGTTCGGAACAGGACAAG 59.967 55.0 21.95 6.55 32.09 3.16 F
915 1007 0.037697 ACTCGCCGCACACAAGAATA 60.038 50.0 0.00 0.00 0.00 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1282 1385 0.892755 ATCCTGTAGTTGTTCGCGGA 59.107 50.0 6.13 0.0 0.0 5.54 R
2681 2819 0.033894 GGAGGGAGAGGACGAGAAGT 60.034 60.0 0.00 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.720531 CACACGTGTGGGCGTTAA 58.279 55.556 35.65 0.00 43.83 2.01
22 23 1.277440 CACACGTGTGGGCGTTAAC 59.723 57.895 35.65 0.00 43.83 2.01
23 24 1.153409 ACACGTGTGGGCGTTAACA 60.153 52.632 22.71 0.00 43.83 2.41
24 25 0.533308 ACACGTGTGGGCGTTAACAT 60.533 50.000 22.71 0.00 43.83 2.71
25 26 0.589223 CACGTGTGGGCGTTAACATT 59.411 50.000 7.58 0.00 43.83 2.71
26 27 1.002251 CACGTGTGGGCGTTAACATTT 60.002 47.619 7.58 0.00 43.83 2.32
27 28 1.264826 ACGTGTGGGCGTTAACATTTC 59.735 47.619 6.39 0.00 43.04 2.17
28 29 1.400500 CGTGTGGGCGTTAACATTTCC 60.400 52.381 6.39 1.91 0.00 3.13
29 30 0.875728 TGTGGGCGTTAACATTTCCG 59.124 50.000 6.39 0.00 0.00 4.30
30 31 1.158434 GTGGGCGTTAACATTTCCGA 58.842 50.000 6.39 0.00 0.00 4.55
31 32 1.536331 GTGGGCGTTAACATTTCCGAA 59.464 47.619 6.39 0.00 0.00 4.30
32 33 2.162809 GTGGGCGTTAACATTTCCGAAT 59.837 45.455 6.39 0.00 0.00 3.34
33 34 3.374678 GTGGGCGTTAACATTTCCGAATA 59.625 43.478 6.39 0.00 0.00 1.75
34 35 4.008330 TGGGCGTTAACATTTCCGAATAA 58.992 39.130 6.39 0.00 0.00 1.40
35 36 4.458295 TGGGCGTTAACATTTCCGAATAAA 59.542 37.500 6.39 0.00 0.00 1.40
36 37 5.048224 TGGGCGTTAACATTTCCGAATAAAA 60.048 36.000 6.39 0.00 0.00 1.52
37 38 5.862860 GGGCGTTAACATTTCCGAATAAAAA 59.137 36.000 6.39 0.00 0.00 1.94
38 39 6.532302 GGGCGTTAACATTTCCGAATAAAAAT 59.468 34.615 6.39 0.00 0.00 1.82
39 40 7.253850 GGGCGTTAACATTTCCGAATAAAAATC 60.254 37.037 6.39 0.00 0.00 2.17
40 41 7.273815 GGCGTTAACATTTCCGAATAAAAATCA 59.726 33.333 6.39 0.00 0.00 2.57
52 53 8.629158 TCCGAATAAAAATCATAAACTCCATGG 58.371 33.333 4.97 4.97 0.00 3.66
88 89 3.621805 ACACGTGGGCCGATGTCA 61.622 61.111 21.57 0.00 40.70 3.58
89 90 2.815211 CACGTGGGCCGATGTCAG 60.815 66.667 10.03 0.00 40.70 3.51
90 91 3.311110 ACGTGGGCCGATGTCAGT 61.311 61.111 6.82 0.00 40.70 3.41
92 93 2.347490 GTGGGCCGATGTCAGTGT 59.653 61.111 0.00 0.00 0.00 3.55
93 94 1.302511 GTGGGCCGATGTCAGTGTT 60.303 57.895 0.00 0.00 0.00 3.32
95 96 0.179004 TGGGCCGATGTCAGTGTTTT 60.179 50.000 0.00 0.00 0.00 2.43
96 97 1.072489 TGGGCCGATGTCAGTGTTTTA 59.928 47.619 0.00 0.00 0.00 1.52
98 99 2.752903 GGGCCGATGTCAGTGTTTTATT 59.247 45.455 0.00 0.00 0.00 1.40
99 100 3.942748 GGGCCGATGTCAGTGTTTTATTA 59.057 43.478 0.00 0.00 0.00 0.98
100 101 4.035208 GGGCCGATGTCAGTGTTTTATTAG 59.965 45.833 0.00 0.00 0.00 1.73
101 102 4.634443 GGCCGATGTCAGTGTTTTATTAGT 59.366 41.667 0.00 0.00 0.00 2.24
102 103 5.813672 GGCCGATGTCAGTGTTTTATTAGTA 59.186 40.000 0.00 0.00 0.00 1.82
103 104 6.238022 GGCCGATGTCAGTGTTTTATTAGTAC 60.238 42.308 0.00 0.00 0.00 2.73
104 105 6.534079 GCCGATGTCAGTGTTTTATTAGTACT 59.466 38.462 0.00 0.00 0.00 2.73
105 106 7.254017 GCCGATGTCAGTGTTTTATTAGTACTC 60.254 40.741 0.00 0.00 0.00 2.59
106 107 7.758076 CCGATGTCAGTGTTTTATTAGTACTCA 59.242 37.037 0.00 0.00 0.00 3.41
107 108 9.135843 CGATGTCAGTGTTTTATTAGTACTCAA 57.864 33.333 0.00 0.00 0.00 3.02
176 180 3.741476 GGAAACTGCTGCTGCCGG 61.741 66.667 13.47 0.00 38.71 6.13
177 181 2.980233 GAAACTGCTGCTGCCGGT 60.980 61.111 13.47 9.07 38.71 5.28
178 182 1.671054 GAAACTGCTGCTGCCGGTA 60.671 57.895 13.47 0.00 38.71 4.02
180 184 1.515521 AAACTGCTGCTGCCGGTAAC 61.516 55.000 13.47 0.00 38.71 2.50
182 186 2.358615 TGCTGCTGCCGGTAACAG 60.359 61.111 17.57 17.57 38.71 3.16
194 204 0.672711 GGTAACAGGAACCGTGAGCC 60.673 60.000 0.00 0.00 0.00 4.70
237 247 1.475280 CTATCCGTTCGGAACAGGACA 59.525 52.381 25.59 18.39 37.08 4.02
239 249 0.032952 TCCGTTCGGAACAGGACAAG 59.967 55.000 21.95 6.55 32.09 3.16
240 250 1.566018 CCGTTCGGAACAGGACAAGC 61.566 60.000 19.91 0.00 0.00 4.01
242 252 1.301401 TTCGGAACAGGACAAGCCG 60.301 57.895 0.00 0.00 43.43 5.52
243 253 2.342279 CGGAACAGGACAAGCCGA 59.658 61.111 0.00 0.00 44.43 5.54
244 254 2.027625 CGGAACAGGACAAGCCGAC 61.028 63.158 0.00 0.00 44.43 4.79
265 308 0.908910 AGGTAATCATGCACCGGTGA 59.091 50.000 38.30 22.50 39.94 4.02
268 311 1.062002 GTAATCATGCACCGGTGAACG 59.938 52.381 38.30 22.33 43.80 3.95
283 326 1.885887 TGAACGGATTTTTCAGGCCAG 59.114 47.619 5.01 0.00 0.00 4.85
332 379 1.904771 CACGGCTTGGAGACCCATA 59.095 57.895 0.00 0.00 43.12 2.74
333 380 0.179073 CACGGCTTGGAGACCCATAG 60.179 60.000 0.00 0.00 43.12 2.23
335 382 1.149401 GGCTTGGAGACCCATAGGC 59.851 63.158 0.00 0.00 43.12 3.93
340 387 0.691078 TGGAGACCCATAGGCAGACC 60.691 60.000 0.00 0.00 37.58 3.85
349 396 3.965026 TAGGCAGACCAGCTCGGCT 62.965 63.158 2.50 0.00 39.83 5.52
350 397 4.400961 GGCAGACCAGCTCGGCTT 62.401 66.667 0.00 0.00 39.83 4.35
351 398 3.123620 GCAGACCAGCTCGGCTTG 61.124 66.667 0.00 0.00 36.40 4.01
353 400 4.400961 AGACCAGCTCGGCTTGGC 62.401 66.667 11.40 5.04 36.40 4.52
354 401 4.704833 GACCAGCTCGGCTTGGCA 62.705 66.667 11.40 0.00 36.40 4.92
368 415 4.712425 GGCACGGCAGCTGCTTTG 62.712 66.667 35.82 30.43 41.70 2.77
382 429 1.202486 TGCTTTGTTCGAAGGAGACGT 60.202 47.619 0.00 0.00 0.00 4.34
385 432 3.318017 CTTTGTTCGAAGGAGACGTCAT 58.682 45.455 19.50 2.45 38.93 3.06
389 436 3.243602 TGTTCGAAGGAGACGTCATTTGA 60.244 43.478 19.50 14.81 38.93 2.69
391 438 3.985008 TCGAAGGAGACGTCATTTGAAA 58.015 40.909 19.50 0.00 34.59 2.69
394 441 5.120208 TCGAAGGAGACGTCATTTGAAATTC 59.880 40.000 19.50 8.81 34.59 2.17
396 443 3.125316 AGGAGACGTCATTTGAAATTCGC 59.875 43.478 19.50 0.00 0.00 4.70
397 444 3.125316 GGAGACGTCATTTGAAATTCGCT 59.875 43.478 19.50 9.15 0.00 4.93
399 446 4.466828 AGACGTCATTTGAAATTCGCTTG 58.533 39.130 19.50 0.00 0.00 4.01
400 447 2.979813 ACGTCATTTGAAATTCGCTTGC 59.020 40.909 10.61 0.00 0.00 4.01
402 449 4.083537 ACGTCATTTGAAATTCGCTTGCTA 60.084 37.500 10.61 0.00 0.00 3.49
403 450 4.851014 CGTCATTTGAAATTCGCTTGCTAA 59.149 37.500 0.00 0.00 0.00 3.09
404 451 5.341993 CGTCATTTGAAATTCGCTTGCTAAA 59.658 36.000 0.00 0.00 0.00 1.85
406 453 5.341993 TCATTTGAAATTCGCTTGCTAAACG 59.658 36.000 0.00 0.00 0.00 3.60
407 454 3.889196 TGAAATTCGCTTGCTAAACGT 57.111 38.095 0.00 0.00 0.00 3.99
408 455 4.217754 TGAAATTCGCTTGCTAAACGTT 57.782 36.364 0.00 0.00 0.00 3.99
409 456 4.602995 TGAAATTCGCTTGCTAAACGTTT 58.397 34.783 18.90 18.90 0.00 3.60
411 458 4.947077 AATTCGCTTGCTAAACGTTTTG 57.053 36.364 20.19 18.19 0.00 2.44
413 460 1.064208 TCGCTTGCTAAACGTTTTGCA 59.936 42.857 35.14 35.14 44.68 4.08
414 461 1.447938 CGCTTGCTAAACGTTTTGCAG 59.552 47.619 35.75 30.36 46.25 4.41
415 462 1.786579 GCTTGCTAAACGTTTTGCAGG 59.213 47.619 36.51 36.51 46.25 4.85
416 463 2.393764 CTTGCTAAACGTTTTGCAGGG 58.606 47.619 34.75 29.29 46.25 4.45
418 465 2.235016 TGCTAAACGTTTTGCAGGGAT 58.765 42.857 35.14 7.25 42.32 3.85
420 467 4.013728 TGCTAAACGTTTTGCAGGGATAT 58.986 39.130 35.14 6.05 42.32 1.63
421 468 4.095782 TGCTAAACGTTTTGCAGGGATATC 59.904 41.667 35.14 12.97 42.32 1.63
422 469 3.757745 AAACGTTTTGCAGGGATATCG 57.242 42.857 7.96 0.00 0.00 2.92
423 470 2.396590 ACGTTTTGCAGGGATATCGT 57.603 45.000 0.00 0.00 0.00 3.73
424 471 2.706890 ACGTTTTGCAGGGATATCGTT 58.293 42.857 0.00 0.00 0.00 3.85
425 472 3.078837 ACGTTTTGCAGGGATATCGTTT 58.921 40.909 0.00 0.00 0.00 3.60
426 473 3.119990 ACGTTTTGCAGGGATATCGTTTG 60.120 43.478 0.00 0.00 0.00 2.93
427 474 3.179048 GTTTTGCAGGGATATCGTTTGC 58.821 45.455 14.32 14.32 35.42 3.68
428 475 2.418368 TTGCAGGGATATCGTTTGCT 57.582 45.000 19.10 0.00 35.85 3.91
431 478 2.288666 GCAGGGATATCGTTTGCTTCA 58.711 47.619 14.06 0.00 0.00 3.02
433 480 3.128589 GCAGGGATATCGTTTGCTTCAAA 59.871 43.478 14.06 0.00 0.00 2.69
445 517 1.657181 CTTCAAAACACCGCACGCC 60.657 57.895 0.00 0.00 0.00 5.68
448 520 3.645975 AAAACACCGCACGCCTCG 61.646 61.111 0.00 0.00 0.00 4.63
467 541 3.885901 CTCGTATCATCTCCACTTCTCCA 59.114 47.826 0.00 0.00 0.00 3.86
468 542 4.474394 TCGTATCATCTCCACTTCTCCAT 58.526 43.478 0.00 0.00 0.00 3.41
469 543 4.520874 TCGTATCATCTCCACTTCTCCATC 59.479 45.833 0.00 0.00 0.00 3.51
470 544 4.522405 CGTATCATCTCCACTTCTCCATCT 59.478 45.833 0.00 0.00 0.00 2.90
484 558 6.322456 ACTTCTCCATCTGTATCGAGATTTCA 59.678 38.462 0.00 0.00 30.63 2.69
487 561 7.374272 TCTCCATCTGTATCGAGATTTCATTC 58.626 38.462 0.00 0.00 29.72 2.67
489 563 7.500141 TCCATCTGTATCGAGATTTCATTCAA 58.500 34.615 0.00 0.00 29.72 2.69
491 565 8.066595 CCATCTGTATCGAGATTTCATTCAAAC 58.933 37.037 0.00 0.00 29.72 2.93
492 566 7.221828 TCTGTATCGAGATTTCATTCAAACG 57.778 36.000 0.00 0.00 0.00 3.60
495 577 7.802738 TGTATCGAGATTTCATTCAAACGTTT 58.197 30.769 7.96 7.96 0.00 3.60
497 579 6.293713 TCGAGATTTCATTCAAACGTTTGA 57.706 33.333 33.86 33.86 44.78 2.69
498 580 6.898041 TCGAGATTTCATTCAAACGTTTGAT 58.102 32.000 36.57 24.22 45.65 2.57
499 581 7.359595 TCGAGATTTCATTCAAACGTTTGATT 58.640 30.769 36.57 30.58 45.65 2.57
512 594 5.499139 ACGTTTGATTGACACAAATCTGT 57.501 34.783 0.00 0.00 39.01 3.41
569 658 1.858091 CTTCTGCTAGGCGTATGGTG 58.142 55.000 0.00 0.00 0.00 4.17
598 687 1.077212 CCAGGAGGATGGCAAGTGG 60.077 63.158 0.00 0.00 36.89 4.00
603 692 2.378547 AGGAGGATGGCAAGTGGTAAAA 59.621 45.455 0.00 0.00 0.00 1.52
604 693 3.161866 GGAGGATGGCAAGTGGTAAAAA 58.838 45.455 0.00 0.00 0.00 1.94
605 694 3.056821 GGAGGATGGCAAGTGGTAAAAAC 60.057 47.826 0.00 0.00 0.00 2.43
606 695 2.897326 AGGATGGCAAGTGGTAAAAACC 59.103 45.455 0.00 0.00 0.00 3.27
607 696 2.897326 GGATGGCAAGTGGTAAAAACCT 59.103 45.455 0.00 0.00 0.00 3.50
608 697 3.323691 GGATGGCAAGTGGTAAAAACCTT 59.676 43.478 0.00 0.00 0.00 3.50
610 699 3.366396 TGGCAAGTGGTAAAAACCTTGA 58.634 40.909 0.00 0.00 37.14 3.02
611 700 3.964031 TGGCAAGTGGTAAAAACCTTGAT 59.036 39.130 0.00 0.00 37.14 2.57
697 786 1.300620 CACTGTCGTCCCTTTCGCA 60.301 57.895 0.00 0.00 0.00 5.10
794 886 4.248842 CACACGCACACCCCCAGA 62.249 66.667 0.00 0.00 0.00 3.86
795 887 3.484806 ACACGCACACCCCCAGAA 61.485 61.111 0.00 0.00 0.00 3.02
796 888 2.669569 CACGCACACCCCCAGAAG 60.670 66.667 0.00 0.00 0.00 2.85
798 890 2.046892 CGCACACCCCCAGAAGAG 60.047 66.667 0.00 0.00 0.00 2.85
799 891 2.583441 CGCACACCCCCAGAAGAGA 61.583 63.158 0.00 0.00 0.00 3.10
800 892 1.761174 GCACACCCCCAGAAGAGAA 59.239 57.895 0.00 0.00 0.00 2.87
801 893 0.322008 GCACACCCCCAGAAGAGAAG 60.322 60.000 0.00 0.00 0.00 2.85
802 894 1.352083 CACACCCCCAGAAGAGAAGA 58.648 55.000 0.00 0.00 0.00 2.87
803 895 1.912043 CACACCCCCAGAAGAGAAGAT 59.088 52.381 0.00 0.00 0.00 2.40
804 896 1.912043 ACACCCCCAGAAGAGAAGATG 59.088 52.381 0.00 0.00 0.00 2.90
805 897 2.191400 CACCCCCAGAAGAGAAGATGA 58.809 52.381 0.00 0.00 0.00 2.92
806 898 2.170187 CACCCCCAGAAGAGAAGATGAG 59.830 54.545 0.00 0.00 0.00 2.90
807 899 1.140652 CCCCCAGAAGAGAAGATGAGC 59.859 57.143 0.00 0.00 0.00 4.26
810 902 3.117963 CCCCAGAAGAGAAGATGAGCAAT 60.118 47.826 0.00 0.00 0.00 3.56
819 911 6.446318 AGAGAAGATGAGCAATTCTATCGAC 58.554 40.000 0.00 0.00 33.53 4.20
837 929 0.980423 ACTCCTCTGTTTCCTCTGCC 59.020 55.000 0.00 0.00 0.00 4.85
838 930 0.108424 CTCCTCTGTTTCCTCTGCCG 60.108 60.000 0.00 0.00 0.00 5.69
839 931 0.541998 TCCTCTGTTTCCTCTGCCGA 60.542 55.000 0.00 0.00 0.00 5.54
840 932 0.539051 CCTCTGTTTCCTCTGCCGAT 59.461 55.000 0.00 0.00 0.00 4.18
841 933 1.065854 CCTCTGTTTCCTCTGCCGATT 60.066 52.381 0.00 0.00 0.00 3.34
842 934 2.616510 CCTCTGTTTCCTCTGCCGATTT 60.617 50.000 0.00 0.00 0.00 2.17
843 935 2.675348 CTCTGTTTCCTCTGCCGATTTC 59.325 50.000 0.00 0.00 0.00 2.17
844 936 1.740025 CTGTTTCCTCTGCCGATTTCC 59.260 52.381 0.00 0.00 0.00 3.13
845 937 1.351017 TGTTTCCTCTGCCGATTTCCT 59.649 47.619 0.00 0.00 0.00 3.36
846 938 2.010497 GTTTCCTCTGCCGATTTCCTC 58.990 52.381 0.00 0.00 0.00 3.71
847 939 1.573108 TTCCTCTGCCGATTTCCTCT 58.427 50.000 0.00 0.00 0.00 3.69
848 940 0.826715 TCCTCTGCCGATTTCCTCTG 59.173 55.000 0.00 0.00 0.00 3.35
849 941 0.813210 CCTCTGCCGATTTCCTCTGC 60.813 60.000 0.00 0.00 34.90 4.26
850 942 0.177604 CTCTGCCGATTTCCTCTGCT 59.822 55.000 0.00 0.00 35.33 4.24
851 943 0.176680 TCTGCCGATTTCCTCTGCTC 59.823 55.000 0.00 0.00 35.33 4.26
852 944 1.150567 CTGCCGATTTCCTCTGCTCG 61.151 60.000 0.00 0.00 35.33 5.03
853 945 4.427394 CCGATTTCCTCTGCTCGG 57.573 61.111 0.00 0.00 43.98 4.63
854 946 1.884926 CCGATTTCCTCTGCTCGGC 60.885 63.158 0.00 0.00 43.51 5.54
855 947 1.142748 CGATTTCCTCTGCTCGGCT 59.857 57.895 0.00 0.00 0.00 5.52
863 955 2.262774 CTCTGCTCGGCTCCCCAAAT 62.263 60.000 0.00 0.00 0.00 2.32
878 970 6.579647 GCTCCCCAAATACCCCGTATAAATAT 60.580 42.308 0.00 0.00 0.00 1.28
914 1006 1.301716 ACTCGCCGCACACAAGAAT 60.302 52.632 0.00 0.00 0.00 2.40
915 1007 0.037697 ACTCGCCGCACACAAGAATA 60.038 50.000 0.00 0.00 0.00 1.75
916 1008 1.290203 CTCGCCGCACACAAGAATAT 58.710 50.000 0.00 0.00 0.00 1.28
961 1053 1.278413 AGCAGATCAAGCAAGCTCTCA 59.722 47.619 11.97 0.00 0.00 3.27
966 1060 2.916702 TCAAGCAAGCTCTCACTCAA 57.083 45.000 0.00 0.00 0.00 3.02
977 1071 3.743396 GCTCTCACTCAATCGTTTCTTGT 59.257 43.478 0.00 0.00 0.00 3.16
979 1073 5.657470 TCTCACTCAATCGTTTCTTGTTG 57.343 39.130 0.00 0.00 0.00 3.33
981 1075 5.815222 TCTCACTCAATCGTTTCTTGTTGAA 59.185 36.000 0.00 0.00 30.96 2.69
982 1076 6.315144 TCTCACTCAATCGTTTCTTGTTGAAA 59.685 34.615 0.00 0.00 41.85 2.69
990 1084 5.448438 TCGTTTCTTGTTGAAATCATTCCG 58.552 37.500 0.00 0.00 45.19 4.30
991 1085 5.237561 TCGTTTCTTGTTGAAATCATTCCGA 59.762 36.000 0.00 0.00 45.19 4.55
1081 1184 2.818132 CGAGGGAGTGCCTCATCC 59.182 66.667 28.03 4.30 34.28 3.51
1317 1420 1.077429 GATGGTTCTGCTGGACCCC 60.077 63.158 17.83 6.69 0.00 4.95
1836 1939 1.454111 GAGCCTGCTAGAGGACGGA 60.454 63.158 11.19 0.00 46.33 4.69
1837 1940 1.000486 AGCCTGCTAGAGGACGGAA 60.000 57.895 11.19 0.00 46.33 4.30
2121 2230 4.070552 GCACCGCCGGAGTTCTCT 62.071 66.667 11.71 0.00 0.00 3.10
2334 2472 4.340381 ACAAAGCTCAATGATAAGATGCCC 59.660 41.667 0.00 0.00 0.00 5.36
2430 2568 4.985845 CCAATGGGTGCCGTTTTC 57.014 55.556 0.00 0.00 29.10 2.29
2432 2570 1.291906 CAATGGGTGCCGTTTTCCC 59.708 57.895 0.00 0.00 41.41 3.97
2450 2588 3.280295 TCCCGTTTGTTTTGTTCAGCTA 58.720 40.909 0.00 0.00 0.00 3.32
2466 2604 4.809193 TCAGCTAGGACATTGAGATAGGT 58.191 43.478 0.00 0.00 0.00 3.08
2473 2611 7.231722 GCTAGGACATTGAGATAGGTCTTCTAA 59.768 40.741 0.00 0.00 33.97 2.10
2475 2613 7.787028 AGGACATTGAGATAGGTCTTCTAAAC 58.213 38.462 0.00 0.00 33.97 2.01
2476 2614 7.400339 AGGACATTGAGATAGGTCTTCTAAACA 59.600 37.037 0.00 0.00 33.97 2.83
2477 2615 8.207545 GGACATTGAGATAGGTCTTCTAAACAT 58.792 37.037 0.00 0.00 33.97 2.71
2478 2616 8.954950 ACATTGAGATAGGTCTTCTAAACATG 57.045 34.615 0.00 0.00 33.97 3.21
2479 2617 8.543774 ACATTGAGATAGGTCTTCTAAACATGT 58.456 33.333 0.00 0.00 33.97 3.21
2480 2618 9.039870 CATTGAGATAGGTCTTCTAAACATGTC 57.960 37.037 0.00 0.00 33.97 3.06
2481 2619 6.796426 TGAGATAGGTCTTCTAAACATGTCG 58.204 40.000 0.00 0.00 33.97 4.35
2482 2620 6.150396 AGATAGGTCTTCTAAACATGTCGG 57.850 41.667 0.00 0.00 0.00 4.79
2483 2621 5.657302 AGATAGGTCTTCTAAACATGTCGGT 59.343 40.000 0.00 0.00 0.00 4.69
2484 2622 4.189639 AGGTCTTCTAAACATGTCGGTC 57.810 45.455 0.00 0.00 0.00 4.79
2485 2623 3.056035 AGGTCTTCTAAACATGTCGGTCC 60.056 47.826 0.00 0.00 0.00 4.46
2486 2624 3.056035 GGTCTTCTAAACATGTCGGTCCT 60.056 47.826 0.00 0.00 0.00 3.85
2487 2625 3.927142 GTCTTCTAAACATGTCGGTCCTG 59.073 47.826 0.00 0.00 0.00 3.86
2488 2626 3.576982 TCTTCTAAACATGTCGGTCCTGT 59.423 43.478 0.00 0.00 0.00 4.00
2489 2627 4.039973 TCTTCTAAACATGTCGGTCCTGTT 59.960 41.667 0.00 0.00 36.68 3.16
2490 2628 4.345859 TCTAAACATGTCGGTCCTGTTT 57.654 40.909 0.00 10.74 43.49 2.83
2491 2629 4.062293 TCTAAACATGTCGGTCCTGTTTG 58.938 43.478 14.28 7.13 42.03 2.93
2492 2630 1.604604 AACATGTCGGTCCTGTTTGG 58.395 50.000 0.00 0.00 32.51 3.28
2493 2631 0.762418 ACATGTCGGTCCTGTTTGGA 59.238 50.000 0.00 0.00 43.86 3.53
2505 2643 5.319043 TCCTGTTTGGATTAGTTTGGACT 57.681 39.130 0.00 0.00 40.56 3.85
2506 2644 5.313712 TCCTGTTTGGATTAGTTTGGACTC 58.686 41.667 0.00 0.00 40.56 3.36
2507 2645 5.070001 CCTGTTTGGATTAGTTTGGACTCA 58.930 41.667 0.00 0.00 36.16 3.41
2508 2646 5.534654 CCTGTTTGGATTAGTTTGGACTCAA 59.465 40.000 0.00 0.00 36.16 3.02
2509 2647 6.385649 TGTTTGGATTAGTTTGGACTCAAC 57.614 37.500 0.00 0.00 37.33 3.18
2510 2648 6.126409 TGTTTGGATTAGTTTGGACTCAACT 58.874 36.000 0.00 0.00 37.33 3.16
2511 2649 7.284074 TGTTTGGATTAGTTTGGACTCAACTA 58.716 34.615 0.00 0.00 37.33 2.24
2512 2650 7.776030 TGTTTGGATTAGTTTGGACTCAACTAA 59.224 33.333 7.52 7.52 37.33 2.24
2513 2651 8.793592 GTTTGGATTAGTTTGGACTCAACTAAT 58.206 33.333 14.87 14.87 38.43 1.73
2514 2652 8.561738 TTGGATTAGTTTGGACTCAACTAATC 57.438 34.615 24.69 24.69 42.90 1.75
2524 2662 8.561738 TTGGACTCAACTAATCCAAAAGTATC 57.438 34.615 2.48 0.00 46.93 2.24
2525 2663 7.110155 TGGACTCAACTAATCCAAAAGTATCC 58.890 38.462 0.00 0.00 39.60 2.59
2526 2664 7.110155 GGACTCAACTAATCCAAAAGTATCCA 58.890 38.462 0.00 0.00 32.35 3.41
2527 2665 7.610305 GGACTCAACTAATCCAAAAGTATCCAA 59.390 37.037 0.00 0.00 32.35 3.53
2528 2666 8.934023 ACTCAACTAATCCAAAAGTATCCAAA 57.066 30.769 0.00 0.00 0.00 3.28
2529 2667 8.793592 ACTCAACTAATCCAAAAGTATCCAAAC 58.206 33.333 0.00 0.00 0.00 2.93
2530 2668 8.698973 TCAACTAATCCAAAAGTATCCAAACA 57.301 30.769 0.00 0.00 0.00 2.83
2531 2669 8.792633 TCAACTAATCCAAAAGTATCCAAACAG 58.207 33.333 0.00 0.00 0.00 3.16
2532 2670 8.792633 CAACTAATCCAAAAGTATCCAAACAGA 58.207 33.333 0.00 0.00 0.00 3.41
2533 2671 8.934023 ACTAATCCAAAAGTATCCAAACAGAA 57.066 30.769 0.00 0.00 0.00 3.02
2534 2672 9.014297 ACTAATCCAAAAGTATCCAAACAGAAG 57.986 33.333 0.00 0.00 0.00 2.85
2535 2673 6.840780 ATCCAAAAGTATCCAAACAGAAGG 57.159 37.500 0.00 0.00 0.00 3.46
2536 2674 5.947663 TCCAAAAGTATCCAAACAGAAGGA 58.052 37.500 0.00 0.00 38.50 3.36
2537 2675 6.552008 TCCAAAAGTATCCAAACAGAAGGAT 58.448 36.000 0.00 0.00 46.09 3.24
2538 2676 7.010160 TCCAAAAGTATCCAAACAGAAGGATT 58.990 34.615 0.00 0.00 41.80 3.01
2539 2677 8.167392 TCCAAAAGTATCCAAACAGAAGGATTA 58.833 33.333 0.00 0.00 41.80 1.75
2540 2678 8.802267 CCAAAAGTATCCAAACAGAAGGATTAA 58.198 33.333 0.00 0.00 41.80 1.40
2545 2683 8.470002 AGTATCCAAACAGAAGGATTAATTTGC 58.530 33.333 0.00 0.00 41.80 3.68
2546 2684 5.708948 TCCAAACAGAAGGATTAATTTGCG 58.291 37.500 0.00 0.00 0.00 4.85
2547 2685 5.242838 TCCAAACAGAAGGATTAATTTGCGT 59.757 36.000 0.00 0.00 0.00 5.24
2548 2686 5.925969 CCAAACAGAAGGATTAATTTGCGTT 59.074 36.000 0.00 0.00 0.00 4.84
2549 2687 7.040340 TCCAAACAGAAGGATTAATTTGCGTTA 60.040 33.333 0.00 0.00 0.00 3.18
2550 2688 7.273381 CCAAACAGAAGGATTAATTTGCGTTAG 59.727 37.037 0.00 0.00 0.00 2.34
2551 2689 7.681939 AACAGAAGGATTAATTTGCGTTAGA 57.318 32.000 0.00 0.00 0.00 2.10
2552 2690 7.865706 ACAGAAGGATTAATTTGCGTTAGAT 57.134 32.000 0.00 0.00 0.00 1.98
2553 2691 7.697691 ACAGAAGGATTAATTTGCGTTAGATG 58.302 34.615 0.00 0.00 0.00 2.90
2554 2692 6.634436 CAGAAGGATTAATTTGCGTTAGATGC 59.366 38.462 0.00 0.00 0.00 3.91
2555 2693 6.318648 AGAAGGATTAATTTGCGTTAGATGCA 59.681 34.615 0.00 0.00 38.54 3.96
2556 2694 6.639632 AGGATTAATTTGCGTTAGATGCAT 57.360 33.333 0.00 0.00 40.22 3.96
2557 2695 6.672147 AGGATTAATTTGCGTTAGATGCATC 58.328 36.000 19.37 19.37 40.22 3.91
2558 2696 6.488006 AGGATTAATTTGCGTTAGATGCATCT 59.512 34.615 30.85 30.85 40.22 2.90
2559 2697 7.661437 AGGATTAATTTGCGTTAGATGCATCTA 59.339 33.333 28.69 28.69 40.22 1.98
2560 2698 8.289618 GGATTAATTTGCGTTAGATGCATCTAA 58.710 33.333 34.91 34.91 44.63 2.10
2591 2729 3.739401 AAATCTAACCCACCCAAGAGG 57.261 47.619 0.00 0.00 43.78 3.69
2602 2740 1.668419 CCCAAGAGGTGCTTATTCCG 58.332 55.000 0.00 0.00 34.31 4.30
2603 2741 1.668419 CCAAGAGGTGCTTATTCCGG 58.332 55.000 0.00 0.00 34.31 5.14
2604 2742 1.065418 CCAAGAGGTGCTTATTCCGGT 60.065 52.381 0.00 0.00 34.31 5.28
2605 2743 2.618045 CCAAGAGGTGCTTATTCCGGTT 60.618 50.000 0.00 0.00 34.31 4.44
2606 2744 3.370103 CCAAGAGGTGCTTATTCCGGTTA 60.370 47.826 0.00 0.00 34.31 2.85
2607 2745 3.821421 AGAGGTGCTTATTCCGGTTAG 57.179 47.619 0.00 0.00 0.00 2.34
2608 2746 3.105283 AGAGGTGCTTATTCCGGTTAGT 58.895 45.455 0.00 0.00 0.00 2.24
2609 2747 3.518303 AGAGGTGCTTATTCCGGTTAGTT 59.482 43.478 0.00 0.00 0.00 2.24
2610 2748 3.869832 GAGGTGCTTATTCCGGTTAGTTC 59.130 47.826 0.00 0.00 0.00 3.01
2611 2749 3.518303 AGGTGCTTATTCCGGTTAGTTCT 59.482 43.478 0.00 0.00 0.00 3.01
2612 2750 4.019591 AGGTGCTTATTCCGGTTAGTTCTT 60.020 41.667 0.00 0.00 0.00 2.52
2613 2751 4.331992 GGTGCTTATTCCGGTTAGTTCTTC 59.668 45.833 0.00 0.00 0.00 2.87
2614 2752 5.176592 GTGCTTATTCCGGTTAGTTCTTCT 58.823 41.667 0.00 0.00 0.00 2.85
2615 2753 5.291371 GTGCTTATTCCGGTTAGTTCTTCTC 59.709 44.000 0.00 0.00 0.00 2.87
2616 2754 4.503370 GCTTATTCCGGTTAGTTCTTCTCG 59.497 45.833 0.00 0.00 0.00 4.04
2617 2755 3.521947 ATTCCGGTTAGTTCTTCTCGG 57.478 47.619 0.00 0.00 38.92 4.63
2618 2756 1.180029 TCCGGTTAGTTCTTCTCGGG 58.820 55.000 0.00 0.00 38.21 5.14
2619 2757 0.175073 CCGGTTAGTTCTTCTCGGGG 59.825 60.000 0.00 0.00 34.54 5.73
2620 2758 0.459759 CGGTTAGTTCTTCTCGGGGC 60.460 60.000 0.00 0.00 0.00 5.80
2621 2759 0.107800 GGTTAGTTCTTCTCGGGGCC 60.108 60.000 0.00 0.00 0.00 5.80
2622 2760 0.611714 GTTAGTTCTTCTCGGGGCCA 59.388 55.000 4.39 0.00 0.00 5.36
2623 2761 1.209747 GTTAGTTCTTCTCGGGGCCAT 59.790 52.381 4.39 0.00 0.00 4.40
2624 2762 1.580059 TAGTTCTTCTCGGGGCCATT 58.420 50.000 4.39 0.00 0.00 3.16
2625 2763 1.580059 AGTTCTTCTCGGGGCCATTA 58.420 50.000 4.39 0.00 0.00 1.90
2626 2764 1.913419 AGTTCTTCTCGGGGCCATTAA 59.087 47.619 4.39 0.00 0.00 1.40
2627 2765 2.307686 AGTTCTTCTCGGGGCCATTAAA 59.692 45.455 4.39 0.00 0.00 1.52
2628 2766 3.086282 GTTCTTCTCGGGGCCATTAAAA 58.914 45.455 4.39 0.00 0.00 1.52
2629 2767 3.443145 TCTTCTCGGGGCCATTAAAAA 57.557 42.857 4.39 0.00 0.00 1.94
2648 2786 5.949233 AAAAACACATTTTTCACTCGCTC 57.051 34.783 0.00 0.00 43.10 5.03
2649 2787 4.900635 AAACACATTTTTCACTCGCTCT 57.099 36.364 0.00 0.00 0.00 4.09
2650 2788 4.900635 AACACATTTTTCACTCGCTCTT 57.099 36.364 0.00 0.00 0.00 2.85
2651 2789 4.474226 ACACATTTTTCACTCGCTCTTC 57.526 40.909 0.00 0.00 0.00 2.87
2652 2790 3.251004 ACACATTTTTCACTCGCTCTTCC 59.749 43.478 0.00 0.00 0.00 3.46
2653 2791 3.499918 CACATTTTTCACTCGCTCTTCCT 59.500 43.478 0.00 0.00 0.00 3.36
2654 2792 3.499918 ACATTTTTCACTCGCTCTTCCTG 59.500 43.478 0.00 0.00 0.00 3.86
2655 2793 1.512926 TTTTCACTCGCTCTTCCTGC 58.487 50.000 0.00 0.00 0.00 4.85
2656 2794 0.392706 TTTCACTCGCTCTTCCTGCA 59.607 50.000 0.00 0.00 0.00 4.41
2657 2795 0.610174 TTCACTCGCTCTTCCTGCAT 59.390 50.000 0.00 0.00 0.00 3.96
2658 2796 0.174389 TCACTCGCTCTTCCTGCATC 59.826 55.000 0.00 0.00 0.00 3.91
2659 2797 0.108472 CACTCGCTCTTCCTGCATCA 60.108 55.000 0.00 0.00 0.00 3.07
2660 2798 0.829333 ACTCGCTCTTCCTGCATCAT 59.171 50.000 0.00 0.00 0.00 2.45
2661 2799 2.034878 ACTCGCTCTTCCTGCATCATA 58.965 47.619 0.00 0.00 0.00 2.15
2662 2800 2.632028 ACTCGCTCTTCCTGCATCATAT 59.368 45.455 0.00 0.00 0.00 1.78
2663 2801 3.252400 CTCGCTCTTCCTGCATCATATC 58.748 50.000 0.00 0.00 0.00 1.63
2664 2802 2.028658 TCGCTCTTCCTGCATCATATCC 60.029 50.000 0.00 0.00 0.00 2.59
2665 2803 2.028294 CGCTCTTCCTGCATCATATCCT 60.028 50.000 0.00 0.00 0.00 3.24
2666 2804 3.556633 CGCTCTTCCTGCATCATATCCTT 60.557 47.826 0.00 0.00 0.00 3.36
2667 2805 4.002316 GCTCTTCCTGCATCATATCCTTC 58.998 47.826 0.00 0.00 0.00 3.46
2668 2806 4.577875 CTCTTCCTGCATCATATCCTTCC 58.422 47.826 0.00 0.00 0.00 3.46
2669 2807 3.328931 TCTTCCTGCATCATATCCTTCCC 59.671 47.826 0.00 0.00 0.00 3.97
2670 2808 2.705148 TCCTGCATCATATCCTTCCCA 58.295 47.619 0.00 0.00 0.00 4.37
2671 2809 2.373169 TCCTGCATCATATCCTTCCCAC 59.627 50.000 0.00 0.00 0.00 4.61
2672 2810 2.374504 CCTGCATCATATCCTTCCCACT 59.625 50.000 0.00 0.00 0.00 4.00
2673 2811 3.181436 CCTGCATCATATCCTTCCCACTT 60.181 47.826 0.00 0.00 0.00 3.16
2674 2812 4.467769 CTGCATCATATCCTTCCCACTTT 58.532 43.478 0.00 0.00 0.00 2.66
2675 2813 4.870636 TGCATCATATCCTTCCCACTTTT 58.129 39.130 0.00 0.00 0.00 2.27
2676 2814 5.271598 TGCATCATATCCTTCCCACTTTTT 58.728 37.500 0.00 0.00 0.00 1.94
2677 2815 5.360714 TGCATCATATCCTTCCCACTTTTTC 59.639 40.000 0.00 0.00 0.00 2.29
2678 2816 5.506317 GCATCATATCCTTCCCACTTTTTCG 60.506 44.000 0.00 0.00 0.00 3.46
2679 2817 5.429681 TCATATCCTTCCCACTTTTTCGA 57.570 39.130 0.00 0.00 0.00 3.71
2680 2818 5.811190 TCATATCCTTCCCACTTTTTCGAA 58.189 37.500 0.00 0.00 0.00 3.71
2681 2819 6.242396 TCATATCCTTCCCACTTTTTCGAAA 58.758 36.000 6.47 6.47 0.00 3.46
2682 2820 4.848562 ATCCTTCCCACTTTTTCGAAAC 57.151 40.909 10.79 0.00 0.00 2.78
2683 2821 3.893521 TCCTTCCCACTTTTTCGAAACT 58.106 40.909 10.79 0.00 0.00 2.66
2684 2822 4.274978 TCCTTCCCACTTTTTCGAAACTT 58.725 39.130 10.79 0.00 0.00 2.66
2685 2823 4.337274 TCCTTCCCACTTTTTCGAAACTTC 59.663 41.667 10.79 0.00 0.00 3.01
2686 2824 4.338400 CCTTCCCACTTTTTCGAAACTTCT 59.662 41.667 10.79 0.00 0.00 2.85
2687 2825 5.494632 TTCCCACTTTTTCGAAACTTCTC 57.505 39.130 10.79 0.00 0.00 2.87
2688 2826 3.558418 TCCCACTTTTTCGAAACTTCTCG 59.442 43.478 10.79 0.00 40.25 4.04
2689 2827 3.311596 CCCACTTTTTCGAAACTTCTCGT 59.688 43.478 10.79 0.00 39.84 4.18
2690 2828 4.515432 CCACTTTTTCGAAACTTCTCGTC 58.485 43.478 10.79 0.00 39.84 4.20
2691 2829 4.515432 CACTTTTTCGAAACTTCTCGTCC 58.485 43.478 10.79 0.00 39.84 4.79
2692 2830 4.270325 CACTTTTTCGAAACTTCTCGTCCT 59.730 41.667 10.79 0.00 39.84 3.85
2693 2831 4.507021 ACTTTTTCGAAACTTCTCGTCCTC 59.493 41.667 10.79 0.00 39.84 3.71
2694 2832 4.317671 TTTTCGAAACTTCTCGTCCTCT 57.682 40.909 10.79 0.00 39.84 3.69
2695 2833 3.555917 TTCGAAACTTCTCGTCCTCTC 57.444 47.619 0.00 0.00 39.84 3.20
2696 2834 1.811359 TCGAAACTTCTCGTCCTCTCC 59.189 52.381 0.00 0.00 39.84 3.71
2697 2835 1.135344 CGAAACTTCTCGTCCTCTCCC 60.135 57.143 0.00 0.00 34.08 4.30
2698 2836 2.172679 GAAACTTCTCGTCCTCTCCCT 58.827 52.381 0.00 0.00 0.00 4.20
2699 2837 1.842052 AACTTCTCGTCCTCTCCCTC 58.158 55.000 0.00 0.00 0.00 4.30
2700 2838 0.033894 ACTTCTCGTCCTCTCCCTCC 60.034 60.000 0.00 0.00 0.00 4.30
2701 2839 0.753848 CTTCTCGTCCTCTCCCTCCC 60.754 65.000 0.00 0.00 0.00 4.30
2702 2840 1.215679 TTCTCGTCCTCTCCCTCCCT 61.216 60.000 0.00 0.00 0.00 4.20
2703 2841 1.152839 CTCGTCCTCTCCCTCCCTC 60.153 68.421 0.00 0.00 0.00 4.30
2704 2842 2.123640 CGTCCTCTCCCTCCCTCC 60.124 72.222 0.00 0.00 0.00 4.30
2705 2843 2.284151 GTCCTCTCCCTCCCTCCC 59.716 72.222 0.00 0.00 0.00 4.30
2706 2844 2.133201 TCCTCTCCCTCCCTCCCT 59.867 66.667 0.00 0.00 0.00 4.20
2707 2845 2.015726 TCCTCTCCCTCCCTCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
2708 2846 2.018086 CCTCTCCCTCCCTCCCTCT 61.018 68.421 0.00 0.00 0.00 3.69
2709 2847 1.541672 CTCTCCCTCCCTCCCTCTC 59.458 68.421 0.00 0.00 0.00 3.20
2710 2848 2.197324 CTCCCTCCCTCCCTCTCG 59.803 72.222 0.00 0.00 0.00 4.04
2711 2849 4.144727 TCCCTCCCTCCCTCTCGC 62.145 72.222 0.00 0.00 0.00 5.03
2712 2850 4.465446 CCCTCCCTCCCTCTCGCA 62.465 72.222 0.00 0.00 0.00 5.10
2713 2851 3.151022 CCTCCCTCCCTCTCGCAC 61.151 72.222 0.00 0.00 0.00 5.34
2714 2852 2.043450 CTCCCTCCCTCTCGCACT 60.043 66.667 0.00 0.00 0.00 4.40
2715 2853 2.363018 TCCCTCCCTCTCGCACTG 60.363 66.667 0.00 0.00 0.00 3.66
2716 2854 4.154347 CCCTCCCTCTCGCACTGC 62.154 72.222 0.00 0.00 0.00 4.40
2717 2855 4.154347 CCTCCCTCTCGCACTGCC 62.154 72.222 0.00 0.00 0.00 4.85
2718 2856 4.154347 CTCCCTCTCGCACTGCCC 62.154 72.222 0.00 0.00 0.00 5.36
2721 2859 3.449227 CCTCTCGCACTGCCCGTA 61.449 66.667 0.00 0.00 0.00 4.02
2722 2860 2.571757 CTCTCGCACTGCCCGTAA 59.428 61.111 0.00 0.00 0.00 3.18
2723 2861 1.080093 CTCTCGCACTGCCCGTAAA 60.080 57.895 0.00 0.00 0.00 2.01
2724 2862 0.669318 CTCTCGCACTGCCCGTAAAA 60.669 55.000 0.00 0.00 0.00 1.52
2725 2863 0.669318 TCTCGCACTGCCCGTAAAAG 60.669 55.000 0.00 0.00 0.00 2.27
2726 2864 2.175811 CGCACTGCCCGTAAAAGC 59.824 61.111 0.00 0.00 0.00 3.51
2727 2865 2.175811 GCACTGCCCGTAAAAGCG 59.824 61.111 0.00 0.00 0.00 4.68
2728 2866 2.175811 CACTGCCCGTAAAAGCGC 59.824 61.111 0.00 0.00 0.00 5.92
2729 2867 3.053896 ACTGCCCGTAAAAGCGCC 61.054 61.111 2.29 0.00 0.00 6.53
2730 2868 2.746277 CTGCCCGTAAAAGCGCCT 60.746 61.111 2.29 0.00 0.00 5.52
2731 2869 2.744709 TGCCCGTAAAAGCGCCTC 60.745 61.111 2.29 0.00 0.00 4.70
2732 2870 3.861263 GCCCGTAAAAGCGCCTCG 61.861 66.667 2.29 1.79 0.00 4.63
2745 2883 3.900892 CCTCGCCGTATCCGTGCT 61.901 66.667 0.00 0.00 0.00 4.40
2746 2884 2.353607 CTCGCCGTATCCGTGCTC 60.354 66.667 0.00 0.00 0.00 4.26
2747 2885 3.825833 CTCGCCGTATCCGTGCTCC 62.826 68.421 0.00 0.00 0.00 4.70
2748 2886 4.201679 CGCCGTATCCGTGCTCCA 62.202 66.667 0.00 0.00 0.00 3.86
2749 2887 2.421739 GCCGTATCCGTGCTCCAT 59.578 61.111 0.00 0.00 0.00 3.41
2750 2888 1.664965 GCCGTATCCGTGCTCCATC 60.665 63.158 0.00 0.00 0.00 3.51
2751 2889 2.041976 CCGTATCCGTGCTCCATCT 58.958 57.895 0.00 0.00 0.00 2.90
2752 2890 1.244816 CCGTATCCGTGCTCCATCTA 58.755 55.000 0.00 0.00 0.00 1.98
2753 2891 1.611977 CCGTATCCGTGCTCCATCTAA 59.388 52.381 0.00 0.00 0.00 2.10
2754 2892 2.607282 CCGTATCCGTGCTCCATCTAAC 60.607 54.545 0.00 0.00 0.00 2.34
2755 2893 2.607282 CGTATCCGTGCTCCATCTAACC 60.607 54.545 0.00 0.00 0.00 2.85
2756 2894 0.759346 ATCCGTGCTCCATCTAACCC 59.241 55.000 0.00 0.00 0.00 4.11
2757 2895 0.325296 TCCGTGCTCCATCTAACCCT 60.325 55.000 0.00 0.00 0.00 4.34
2758 2896 0.179073 CCGTGCTCCATCTAACCCTG 60.179 60.000 0.00 0.00 0.00 4.45
2759 2897 0.811616 CGTGCTCCATCTAACCCTGC 60.812 60.000 0.00 0.00 0.00 4.85
2760 2898 0.464554 GTGCTCCATCTAACCCTGCC 60.465 60.000 0.00 0.00 0.00 4.85
2761 2899 0.913934 TGCTCCATCTAACCCTGCCA 60.914 55.000 0.00 0.00 0.00 4.92
2762 2900 0.475906 GCTCCATCTAACCCTGCCAT 59.524 55.000 0.00 0.00 0.00 4.40
2763 2901 1.544314 GCTCCATCTAACCCTGCCATC 60.544 57.143 0.00 0.00 0.00 3.51
2764 2902 1.072965 CTCCATCTAACCCTGCCATCC 59.927 57.143 0.00 0.00 0.00 3.51
2765 2903 0.846015 CCATCTAACCCTGCCATCCA 59.154 55.000 0.00 0.00 0.00 3.41
2766 2904 1.215173 CCATCTAACCCTGCCATCCAA 59.785 52.381 0.00 0.00 0.00 3.53
2767 2905 2.358090 CCATCTAACCCTGCCATCCAAA 60.358 50.000 0.00 0.00 0.00 3.28
2768 2906 2.507407 TCTAACCCTGCCATCCAAAC 57.493 50.000 0.00 0.00 0.00 2.93
2769 2907 1.707989 TCTAACCCTGCCATCCAAACA 59.292 47.619 0.00 0.00 0.00 2.83
2770 2908 1.818674 CTAACCCTGCCATCCAAACAC 59.181 52.381 0.00 0.00 0.00 3.32
2771 2909 0.105760 AACCCTGCCATCCAAACACA 60.106 50.000 0.00 0.00 0.00 3.72
2772 2910 0.114954 ACCCTGCCATCCAAACACAT 59.885 50.000 0.00 0.00 0.00 3.21
2773 2911 1.269012 CCCTGCCATCCAAACACATT 58.731 50.000 0.00 0.00 0.00 2.71
2774 2912 1.624813 CCCTGCCATCCAAACACATTT 59.375 47.619 0.00 0.00 0.00 2.32
2775 2913 2.038820 CCCTGCCATCCAAACACATTTT 59.961 45.455 0.00 0.00 0.00 1.82
2776 2914 3.496515 CCCTGCCATCCAAACACATTTTT 60.497 43.478 0.00 0.00 0.00 1.94
2777 2915 3.499157 CCTGCCATCCAAACACATTTTTG 59.501 43.478 0.00 0.00 36.40 2.44
2790 2928 9.581099 CAAACACATTTTTGGTTAGAGTTAGTT 57.419 29.630 0.00 0.00 33.53 2.24
2791 2929 9.797556 AAACACATTTTTGGTTAGAGTTAGTTC 57.202 29.630 0.00 0.00 0.00 3.01
2792 2930 8.514330 ACACATTTTTGGTTAGAGTTAGTTCA 57.486 30.769 0.00 0.00 0.00 3.18
2793 2931 8.621286 ACACATTTTTGGTTAGAGTTAGTTCAG 58.379 33.333 0.00 0.00 0.00 3.02
2794 2932 8.076178 CACATTTTTGGTTAGAGTTAGTTCAGG 58.924 37.037 0.00 0.00 0.00 3.86
2795 2933 7.230712 ACATTTTTGGTTAGAGTTAGTTCAGGG 59.769 37.037 0.00 0.00 0.00 4.45
2796 2934 5.899631 TTTGGTTAGAGTTAGTTCAGGGT 57.100 39.130 0.00 0.00 0.00 4.34
2797 2935 5.899631 TTGGTTAGAGTTAGTTCAGGGTT 57.100 39.130 0.00 0.00 0.00 4.11
2798 2936 6.999705 TTGGTTAGAGTTAGTTCAGGGTTA 57.000 37.500 0.00 0.00 0.00 2.85
2799 2937 6.999705 TGGTTAGAGTTAGTTCAGGGTTAA 57.000 37.500 0.00 0.00 0.00 2.01
2800 2938 7.563724 TGGTTAGAGTTAGTTCAGGGTTAAT 57.436 36.000 0.00 0.00 0.00 1.40
2801 2939 7.981142 TGGTTAGAGTTAGTTCAGGGTTAATT 58.019 34.615 0.00 0.00 0.00 1.40
2802 2940 8.442374 TGGTTAGAGTTAGTTCAGGGTTAATTT 58.558 33.333 0.00 0.00 0.00 1.82
2803 2941 9.948964 GGTTAGAGTTAGTTCAGGGTTAATTTA 57.051 33.333 0.00 0.00 0.00 1.40
2807 2945 8.666821 AGAGTTAGTTCAGGGTTAATTTAAGGT 58.333 33.333 0.00 0.00 0.00 3.50
2808 2946 9.293404 GAGTTAGTTCAGGGTTAATTTAAGGTT 57.707 33.333 0.00 0.00 0.00 3.50
2853 2991 9.757227 CTAATTGAGTTAGAGTATCAAAGAGGG 57.243 37.037 0.00 0.00 41.99 4.30
2854 2992 5.599999 TGAGTTAGAGTATCAAAGAGGGC 57.400 43.478 0.00 0.00 37.82 5.19
2867 3005 2.282180 AGGGCCGTCGTTGCAAAT 60.282 55.556 0.00 0.00 0.00 2.32
3032 3173 2.417339 TTTGTCGTCTTCTCACTCCG 57.583 50.000 0.00 0.00 0.00 4.63
3042 3183 2.606213 TCACTCCGGATGTGGCCA 60.606 61.111 24.56 0.00 36.21 5.36
3055 3196 0.388520 GTGGCCATTGCTCGGTTTTC 60.389 55.000 9.72 0.00 37.74 2.29
3074 3215 3.403057 GTTCGTGCTCGCGCTGAA 61.403 61.111 5.56 0.02 36.97 3.02
3085 3226 0.946221 CGCGCTGAACCTTGACTTCT 60.946 55.000 5.56 0.00 0.00 2.85
3093 3234 2.910688 ACCTTGACTTCTGCGAGAAA 57.089 45.000 0.00 0.00 33.19 2.52
3128 3269 4.393155 TCGGCTGGCGTTCATGCT 62.393 61.111 23.07 0.00 34.52 3.79
3137 3278 1.351430 GCGTTCATGCTGCGTACTCA 61.351 55.000 0.00 0.00 0.00 3.41
3147 3288 3.812609 TGCTGCGTACTCATTTTCTTTGA 59.187 39.130 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.400500 GGAAATGTTAACGCCCACACG 60.400 52.381 0.26 0.00 39.50 4.49
9 10 1.400500 CGGAAATGTTAACGCCCACAC 60.400 52.381 0.26 0.00 0.00 3.82
10 11 0.875728 CGGAAATGTTAACGCCCACA 59.124 50.000 0.26 0.00 0.00 4.17
11 12 1.158434 TCGGAAATGTTAACGCCCAC 58.842 50.000 0.26 0.00 0.00 4.61
12 13 1.893544 TTCGGAAATGTTAACGCCCA 58.106 45.000 0.26 0.00 0.00 5.36
13 14 4.619437 TTATTCGGAAATGTTAACGCCC 57.381 40.909 0.26 0.00 0.00 6.13
14 15 6.931243 TTTTTATTCGGAAATGTTAACGCC 57.069 33.333 0.26 0.00 0.00 5.68
15 16 8.164058 TGATTTTTATTCGGAAATGTTAACGC 57.836 30.769 0.26 0.00 0.00 4.84
26 27 8.629158 CCATGGAGTTTATGATTTTTATTCGGA 58.371 33.333 5.56 0.00 0.00 4.55
27 28 7.382218 GCCATGGAGTTTATGATTTTTATTCGG 59.618 37.037 18.40 0.00 0.00 4.30
28 29 8.137437 AGCCATGGAGTTTATGATTTTTATTCG 58.863 33.333 18.40 0.00 0.00 3.34
32 33 9.866655 AGATAGCCATGGAGTTTATGATTTTTA 57.133 29.630 18.40 0.00 0.00 1.52
33 34 8.773033 AGATAGCCATGGAGTTTATGATTTTT 57.227 30.769 18.40 0.00 0.00 1.94
34 35 8.000709 TGAGATAGCCATGGAGTTTATGATTTT 58.999 33.333 18.40 0.00 0.00 1.82
35 36 7.520798 TGAGATAGCCATGGAGTTTATGATTT 58.479 34.615 18.40 0.00 0.00 2.17
36 37 7.083062 TGAGATAGCCATGGAGTTTATGATT 57.917 36.000 18.40 0.00 0.00 2.57
37 38 6.692849 TGAGATAGCCATGGAGTTTATGAT 57.307 37.500 18.40 0.00 0.00 2.45
38 39 6.296087 GGATGAGATAGCCATGGAGTTTATGA 60.296 42.308 18.40 0.00 34.07 2.15
39 40 5.879223 GGATGAGATAGCCATGGAGTTTATG 59.121 44.000 18.40 0.00 34.07 1.90
40 41 5.337894 CGGATGAGATAGCCATGGAGTTTAT 60.338 44.000 18.40 7.06 33.22 1.40
52 53 1.080434 GCGGTCCGGATGAGATAGC 60.080 63.158 14.38 2.09 0.00 2.97
111 112 8.220434 GCTCGCAGCTGATTTTTATTTTTAAAA 58.780 29.630 20.43 0.00 38.45 1.52
112 113 7.728895 GCTCGCAGCTGATTTTTATTTTTAAA 58.271 30.769 20.43 0.00 38.45 1.52
113 114 7.276953 GCTCGCAGCTGATTTTTATTTTTAA 57.723 32.000 20.43 0.00 38.45 1.52
114 115 6.869421 GCTCGCAGCTGATTTTTATTTTTA 57.131 33.333 20.43 0.00 38.45 1.52
115 116 5.768333 GCTCGCAGCTGATTTTTATTTTT 57.232 34.783 20.43 0.00 38.45 1.94
145 149 4.812476 TTCCGCCGCACTCCATCG 62.812 66.667 0.00 0.00 0.00 3.84
146 150 2.435938 TTTCCGCCGCACTCCATC 60.436 61.111 0.00 0.00 0.00 3.51
147 151 2.746277 GTTTCCGCCGCACTCCAT 60.746 61.111 0.00 0.00 0.00 3.41
148 152 3.936203 AGTTTCCGCCGCACTCCA 61.936 61.111 0.00 0.00 0.00 3.86
149 153 3.423154 CAGTTTCCGCCGCACTCC 61.423 66.667 0.00 0.00 0.00 3.85
150 154 4.090057 GCAGTTTCCGCCGCACTC 62.090 66.667 0.00 0.00 0.00 3.51
151 155 4.626081 AGCAGTTTCCGCCGCACT 62.626 61.111 0.00 0.00 0.00 4.40
152 156 4.389576 CAGCAGTTTCCGCCGCAC 62.390 66.667 0.00 0.00 0.00 5.34
176 180 1.012486 CGGCTCACGGTTCCTGTTAC 61.012 60.000 0.00 0.00 39.42 2.50
177 181 1.290955 CGGCTCACGGTTCCTGTTA 59.709 57.895 0.00 0.00 39.42 2.41
178 182 2.030562 CGGCTCACGGTTCCTGTT 59.969 61.111 0.00 0.00 39.42 3.16
230 240 1.071471 CCTTGTCGGCTTGTCCTGT 59.929 57.895 0.00 0.00 0.00 4.00
237 247 2.017049 GCATGATTACCTTGTCGGCTT 58.983 47.619 0.00 0.00 35.61 4.35
239 249 1.064060 GTGCATGATTACCTTGTCGGC 59.936 52.381 0.00 0.00 35.61 5.54
240 250 1.670811 GGTGCATGATTACCTTGTCGG 59.329 52.381 0.00 0.00 39.35 4.79
242 252 1.670811 CCGGTGCATGATTACCTTGTC 59.329 52.381 0.00 0.00 34.77 3.18
243 253 1.004277 ACCGGTGCATGATTACCTTGT 59.996 47.619 6.12 0.00 34.77 3.16
244 254 1.401552 CACCGGTGCATGATTACCTTG 59.598 52.381 24.02 0.00 34.77 3.61
265 308 0.603065 GCTGGCCTGAAAAATCCGTT 59.397 50.000 14.77 0.00 0.00 4.44
268 311 0.109132 CACGCTGGCCTGAAAAATCC 60.109 55.000 14.77 0.00 0.00 3.01
322 368 0.691078 TGGTCTGCCTATGGGTCTCC 60.691 60.000 0.00 0.00 35.27 3.71
327 374 1.449353 GAGCTGGTCTGCCTATGGG 59.551 63.158 0.00 0.00 35.27 4.00
333 380 4.400961 AAGCCGAGCTGGTCTGCC 62.401 66.667 17.63 2.89 39.62 4.85
335 382 2.435586 CCAAGCCGAGCTGGTCTG 60.436 66.667 5.23 0.00 39.62 3.51
351 398 4.712425 CAAAGCAGCTGCCGTGCC 62.712 66.667 34.39 6.88 42.24 5.01
353 400 1.370900 GAACAAAGCAGCTGCCGTG 60.371 57.895 34.39 31.04 43.38 4.94
354 401 2.896801 CGAACAAAGCAGCTGCCGT 61.897 57.895 34.39 25.21 43.38 5.68
355 402 2.116736 TTCGAACAAAGCAGCTGCCG 62.117 55.000 34.39 27.32 43.38 5.69
356 403 0.386478 CTTCGAACAAAGCAGCTGCC 60.386 55.000 34.39 17.15 43.38 4.85
357 404 0.386478 CCTTCGAACAAAGCAGCTGC 60.386 55.000 31.53 31.53 42.49 5.25
359 406 1.070758 TCTCCTTCGAACAAAGCAGCT 59.929 47.619 0.00 0.00 0.00 4.24
360 407 1.195674 GTCTCCTTCGAACAAAGCAGC 59.804 52.381 0.00 0.00 0.00 5.25
361 408 1.457303 CGTCTCCTTCGAACAAAGCAG 59.543 52.381 0.00 0.00 0.00 4.24
362 409 1.202486 ACGTCTCCTTCGAACAAAGCA 60.202 47.619 0.00 0.00 0.00 3.91
363 410 1.456165 GACGTCTCCTTCGAACAAAGC 59.544 52.381 8.70 0.00 0.00 3.51
368 415 3.314553 TCAAATGACGTCTCCTTCGAAC 58.685 45.455 17.92 0.00 0.00 3.95
382 429 5.341993 CGTTTAGCAAGCGAATTTCAAATGA 59.658 36.000 0.00 0.00 0.00 2.57
385 432 4.602995 ACGTTTAGCAAGCGAATTTCAAA 58.397 34.783 10.86 0.00 0.00 2.69
389 436 4.317769 GCAAAACGTTTAGCAAGCGAATTT 60.318 37.500 15.03 8.78 0.00 1.82
391 438 2.724174 GCAAAACGTTTAGCAAGCGAAT 59.276 40.909 15.03 0.00 0.00 3.34
394 441 1.447938 CTGCAAAACGTTTAGCAAGCG 59.552 47.619 15.03 6.81 36.44 4.68
396 443 2.034053 TCCCTGCAAAACGTTTAGCAAG 59.966 45.455 15.03 9.54 36.44 4.01
397 444 2.025155 TCCCTGCAAAACGTTTAGCAA 58.975 42.857 15.03 0.00 36.44 3.91
399 446 4.598062 GATATCCCTGCAAAACGTTTAGC 58.402 43.478 15.03 6.09 0.00 3.09
400 447 4.331717 ACGATATCCCTGCAAAACGTTTAG 59.668 41.667 15.03 8.13 0.00 1.85
402 449 3.078837 ACGATATCCCTGCAAAACGTTT 58.921 40.909 7.96 7.96 0.00 3.60
403 450 2.706890 ACGATATCCCTGCAAAACGTT 58.293 42.857 0.00 0.00 0.00 3.99
404 451 2.396590 ACGATATCCCTGCAAAACGT 57.603 45.000 0.00 0.00 0.00 3.99
406 453 3.119495 AGCAAACGATATCCCTGCAAAAC 60.119 43.478 16.42 0.00 35.44 2.43
407 454 3.088532 AGCAAACGATATCCCTGCAAAA 58.911 40.909 16.42 0.00 35.44 2.44
408 455 2.722094 AGCAAACGATATCCCTGCAAA 58.278 42.857 16.42 0.00 35.44 3.68
409 456 2.418368 AGCAAACGATATCCCTGCAA 57.582 45.000 16.42 0.00 35.44 4.08
411 458 2.288666 TGAAGCAAACGATATCCCTGC 58.711 47.619 9.31 9.31 0.00 4.85
413 460 4.764823 TGTTTTGAAGCAAACGATATCCCT 59.235 37.500 0.00 0.00 32.79 4.20
414 461 4.857037 GTGTTTTGAAGCAAACGATATCCC 59.143 41.667 0.00 0.00 32.79 3.85
415 462 4.857037 GGTGTTTTGAAGCAAACGATATCC 59.143 41.667 0.00 0.00 32.79 2.59
416 463 4.553429 CGGTGTTTTGAAGCAAACGATATC 59.447 41.667 0.00 0.00 32.79 1.63
418 465 3.850374 GCGGTGTTTTGAAGCAAACGATA 60.850 43.478 9.06 0.00 32.79 2.92
420 467 1.795889 GCGGTGTTTTGAAGCAAACGA 60.796 47.619 9.06 0.00 32.79 3.85
421 468 0.570272 GCGGTGTTTTGAAGCAAACG 59.430 50.000 0.00 0.00 32.79 3.60
422 469 1.323235 GTGCGGTGTTTTGAAGCAAAC 59.677 47.619 0.00 0.00 39.67 2.93
423 470 1.634702 GTGCGGTGTTTTGAAGCAAA 58.365 45.000 0.00 0.00 39.67 3.68
424 471 0.524392 CGTGCGGTGTTTTGAAGCAA 60.524 50.000 0.00 0.00 39.67 3.91
425 472 1.063327 CGTGCGGTGTTTTGAAGCA 59.937 52.632 0.00 0.00 35.27 3.91
426 473 2.292916 GCGTGCGGTGTTTTGAAGC 61.293 57.895 0.00 0.00 0.00 3.86
427 474 1.657181 GGCGTGCGGTGTTTTGAAG 60.657 57.895 0.00 0.00 0.00 3.02
428 475 2.054140 GAGGCGTGCGGTGTTTTGAA 62.054 55.000 0.00 0.00 0.00 2.69
431 478 2.974935 TACGAGGCGTGCGGTGTTTT 62.975 55.000 2.33 0.00 41.39 2.43
433 480 3.291101 ATACGAGGCGTGCGGTGTT 62.291 57.895 2.33 0.00 41.39 3.32
445 517 3.885901 TGGAGAAGTGGAGATGATACGAG 59.114 47.826 0.00 0.00 0.00 4.18
448 520 5.304101 ACAGATGGAGAAGTGGAGATGATAC 59.696 44.000 0.00 0.00 0.00 2.24
467 541 7.492669 ACGTTTGAATGAAATCTCGATACAGAT 59.507 33.333 0.00 0.00 34.34 2.90
468 542 6.811665 ACGTTTGAATGAAATCTCGATACAGA 59.188 34.615 0.00 0.00 0.00 3.41
469 543 6.993878 ACGTTTGAATGAAATCTCGATACAG 58.006 36.000 0.00 0.00 0.00 2.74
470 544 6.961359 ACGTTTGAATGAAATCTCGATACA 57.039 33.333 0.00 0.00 0.00 2.29
487 561 6.253298 ACAGATTTGTGTCAATCAAACGTTTG 59.747 34.615 30.63 30.63 37.56 2.93
489 563 5.890334 ACAGATTTGTGTCAATCAAACGTT 58.110 33.333 0.00 0.00 37.56 3.99
512 594 2.552155 GGTTGCAACCCAGTATCTGACA 60.552 50.000 34.36 0.00 43.43 3.58
513 595 2.084546 GGTTGCAACCCAGTATCTGAC 58.915 52.381 34.36 7.77 43.43 3.51
514 596 2.489938 GGTTGCAACCCAGTATCTGA 57.510 50.000 34.36 0.00 43.43 3.27
554 638 0.035915 TTTGCACCATACGCCTAGCA 60.036 50.000 0.00 0.00 0.00 3.49
590 679 4.600692 ATCAAGGTTTTTACCACTTGCC 57.399 40.909 0.00 0.00 39.97 4.52
603 692 8.514504 AGGGATAAGATGGATTTTATCAAGGTT 58.485 33.333 10.48 0.00 37.79 3.50
604 693 8.061890 AGGGATAAGATGGATTTTATCAAGGT 57.938 34.615 10.48 0.00 37.79 3.50
605 694 8.946797 AAGGGATAAGATGGATTTTATCAAGG 57.053 34.615 10.48 0.00 37.79 3.61
606 695 9.018582 GGAAGGGATAAGATGGATTTTATCAAG 57.981 37.037 10.48 0.00 37.79 3.02
607 696 7.950124 GGGAAGGGATAAGATGGATTTTATCAA 59.050 37.037 10.48 0.00 37.79 2.57
608 697 7.298070 AGGGAAGGGATAAGATGGATTTTATCA 59.702 37.037 10.48 0.00 37.79 2.15
610 699 7.669677 AGGGAAGGGATAAGATGGATTTTAT 57.330 36.000 0.00 0.00 0.00 1.40
611 700 7.297614 CAAGGGAAGGGATAAGATGGATTTTA 58.702 38.462 0.00 0.00 0.00 1.52
793 885 7.144661 TCGATAGAATTGCTCATCTTCTCTTC 58.855 38.462 0.00 0.00 46.15 2.87
794 886 7.048629 TCGATAGAATTGCTCATCTTCTCTT 57.951 36.000 0.00 0.00 46.15 2.85
795 887 6.647334 TCGATAGAATTGCTCATCTTCTCT 57.353 37.500 0.00 0.00 46.15 3.10
799 891 8.611035 AGAGGAGTCGATAGAATTGCTCATCTT 61.611 40.741 6.73 0.00 46.55 2.40
819 911 0.108424 CGGCAGAGGAAACAGAGGAG 60.108 60.000 0.00 0.00 0.00 3.69
837 929 0.873743 GAGCCGAGCAGAGGAAATCG 60.874 60.000 0.00 0.00 35.02 3.34
838 930 0.531753 GGAGCCGAGCAGAGGAAATC 60.532 60.000 0.00 0.00 0.00 2.17
839 931 1.524482 GGAGCCGAGCAGAGGAAAT 59.476 57.895 0.00 0.00 0.00 2.17
840 932 2.660064 GGGAGCCGAGCAGAGGAAA 61.660 63.158 0.00 0.00 0.00 3.13
841 933 3.077556 GGGAGCCGAGCAGAGGAA 61.078 66.667 0.00 0.00 0.00 3.36
844 936 2.262774 ATTTGGGGAGCCGAGCAGAG 62.263 60.000 0.00 0.00 0.00 3.35
845 937 0.980754 TATTTGGGGAGCCGAGCAGA 60.981 55.000 0.00 0.00 0.00 4.26
846 938 0.815615 GTATTTGGGGAGCCGAGCAG 60.816 60.000 0.00 0.00 0.00 4.24
847 939 1.223487 GTATTTGGGGAGCCGAGCA 59.777 57.895 0.00 0.00 0.00 4.26
848 940 1.526225 GGTATTTGGGGAGCCGAGC 60.526 63.158 0.00 0.00 0.00 5.03
849 941 1.148498 GGGTATTTGGGGAGCCGAG 59.852 63.158 0.00 0.00 0.00 4.63
850 942 2.380285 GGGGTATTTGGGGAGCCGA 61.380 63.158 0.00 0.00 33.86 5.54
851 943 2.194868 GGGGTATTTGGGGAGCCG 59.805 66.667 0.00 0.00 33.86 5.52
852 944 1.347243 TACGGGGTATTTGGGGAGCC 61.347 60.000 0.00 0.00 0.00 4.70
853 945 0.769247 ATACGGGGTATTTGGGGAGC 59.231 55.000 0.00 0.00 0.00 4.70
854 946 4.710313 TTTATACGGGGTATTTGGGGAG 57.290 45.455 0.00 0.00 30.79 4.30
855 947 6.297126 CCATATTTATACGGGGTATTTGGGGA 60.297 42.308 0.00 0.00 30.79 4.81
860 952 4.637091 GCGCCATATTTATACGGGGTATTT 59.363 41.667 0.00 0.00 34.16 1.40
863 955 2.417107 CGCGCCATATTTATACGGGGTA 60.417 50.000 0.00 0.00 34.16 3.69
935 1027 1.300971 TTGCTTGATCTGCTCCGTGC 61.301 55.000 11.38 0.00 43.25 5.34
937 1029 1.023513 GCTTGCTTGATCTGCTCCGT 61.024 55.000 11.38 0.00 0.00 4.69
939 1031 1.015868 GAGCTTGCTTGATCTGCTCC 58.984 55.000 11.38 2.30 42.82 4.70
942 1034 1.397692 GTGAGAGCTTGCTTGATCTGC 59.602 52.381 2.33 0.00 32.38 4.26
945 1037 2.969990 TGAGTGAGAGCTTGCTTGATC 58.030 47.619 0.00 0.00 0.00 2.92
977 1071 8.955388 TCATTAATGAACTCGGAATGATTTCAA 58.045 29.630 15.82 0.00 45.73 2.69
979 1073 7.589221 GCTCATTAATGAACTCGGAATGATTTC 59.411 37.037 18.47 0.00 36.29 2.17
981 1075 6.543465 TGCTCATTAATGAACTCGGAATGATT 59.457 34.615 18.47 0.00 36.29 2.57
982 1076 6.057533 TGCTCATTAATGAACTCGGAATGAT 58.942 36.000 18.47 0.00 36.29 2.45
1016 1119 2.816958 CGCTCATTGCTGACGCCT 60.817 61.111 0.00 0.00 40.11 5.52
1026 1129 2.322355 CTGGAATCAGGTCGCTCATT 57.678 50.000 0.00 0.00 37.36 2.57
1081 1184 4.760047 CTGGTCGAAGCCCACCCG 62.760 72.222 0.00 0.00 0.00 5.28
1282 1385 0.892755 ATCCTGTAGTTGTTCGCGGA 59.107 50.000 6.13 0.00 0.00 5.54
1836 1939 2.030562 CAGGTTCTCGGGCACGTT 59.969 61.111 8.89 0.00 41.85 3.99
1837 1940 4.681978 GCAGGTTCTCGGGCACGT 62.682 66.667 8.89 0.00 41.85 4.49
1971 2074 1.748122 GGAGACTGTCGAGGCGGTA 60.748 63.158 1.52 0.00 29.20 4.02
1977 2080 1.064946 GATGGCGGAGACTGTCGAG 59.935 63.158 1.52 0.00 34.59 4.04
2004 2107 4.771356 CCGATCACCACGACGCGT 62.771 66.667 13.85 13.85 42.36 6.01
2106 2215 3.382832 CCAGAGAACTCCGGCGGT 61.383 66.667 27.32 6.51 0.00 5.68
2143 2252 4.984295 TCAGGTGATCAGATCTCTAGGAG 58.016 47.826 11.83 0.00 0.00 3.69
2198 2312 1.014044 CGCAGACGCACACATACCTT 61.014 55.000 0.00 0.00 38.40 3.50
2204 2318 4.662961 CCCTCGCAGACGCACACA 62.663 66.667 0.00 0.00 39.84 3.72
2334 2472 4.144731 GCAGACAAAATCGAAAACAGAACG 59.855 41.667 0.00 0.00 0.00 3.95
2381 2519 2.109774 CAGCTCCAGAATCCTCTCACT 58.890 52.381 0.00 0.00 0.00 3.41
2430 2568 2.577449 AGCTGAACAAAACAAACGGG 57.423 45.000 0.00 0.00 0.00 5.28
2432 2570 4.201871 TGTCCTAGCTGAACAAAACAAACG 60.202 41.667 0.00 0.00 0.00 3.60
2450 2588 7.400339 TGTTTAGAAGACCTATCTCAATGTCCT 59.600 37.037 0.00 0.00 32.34 3.85
2466 2604 3.576982 ACAGGACCGACATGTTTAGAAGA 59.423 43.478 0.00 0.00 40.75 2.87
2475 2613 3.623848 TCCAAACAGGACCGACATG 57.376 52.632 0.00 0.00 43.07 3.21
2481 2619 5.981384 AGTCCAAACTAATCCAAACAGGACC 60.981 44.000 0.00 0.00 41.32 4.46
2482 2620 5.070685 AGTCCAAACTAATCCAAACAGGAC 58.929 41.667 0.00 0.00 41.32 3.85
2483 2621 5.163141 TGAGTCCAAACTAATCCAAACAGGA 60.163 40.000 0.00 0.00 43.45 3.86
2484 2622 5.070001 TGAGTCCAAACTAATCCAAACAGG 58.930 41.667 0.00 0.00 35.28 4.00
2485 2623 6.263168 AGTTGAGTCCAAACTAATCCAAACAG 59.737 38.462 0.00 0.00 35.28 3.16
2486 2624 6.126409 AGTTGAGTCCAAACTAATCCAAACA 58.874 36.000 0.00 0.00 35.28 2.83
2487 2625 6.635030 AGTTGAGTCCAAACTAATCCAAAC 57.365 37.500 0.00 0.00 35.28 2.93
2488 2626 8.934023 ATTAGTTGAGTCCAAACTAATCCAAA 57.066 30.769 17.02 1.60 34.89 3.28
2489 2627 8.561738 GATTAGTTGAGTCCAAACTAATCCAA 57.438 34.615 27.07 9.70 40.94 3.53
2492 2630 8.561738 TTGGATTAGTTGAGTCCAAACTAATC 57.438 34.615 28.18 28.18 46.07 1.75
2500 2638 7.110155 GGATACTTTTGGATTAGTTGAGTCCA 58.890 38.462 0.00 0.00 40.13 4.02
2501 2639 7.110155 TGGATACTTTTGGATTAGTTGAGTCC 58.890 38.462 0.00 0.00 37.61 3.85
2502 2640 8.561738 TTGGATACTTTTGGATTAGTTGAGTC 57.438 34.615 0.00 0.00 37.61 3.36
2503 2641 8.793592 GTTTGGATACTTTTGGATTAGTTGAGT 58.206 33.333 0.00 0.00 37.61 3.41
2504 2642 8.792633 TGTTTGGATACTTTTGGATTAGTTGAG 58.207 33.333 0.00 0.00 37.61 3.02
2505 2643 8.698973 TGTTTGGATACTTTTGGATTAGTTGA 57.301 30.769 0.00 0.00 37.61 3.18
2506 2644 8.792633 TCTGTTTGGATACTTTTGGATTAGTTG 58.207 33.333 0.00 0.00 37.61 3.16
2507 2645 8.934023 TCTGTTTGGATACTTTTGGATTAGTT 57.066 30.769 0.00 0.00 37.61 2.24
2508 2646 8.934023 TTCTGTTTGGATACTTTTGGATTAGT 57.066 30.769 0.00 0.00 37.61 2.24
2509 2647 8.462016 CCTTCTGTTTGGATACTTTTGGATTAG 58.538 37.037 0.00 0.00 37.61 1.73
2510 2648 8.167392 TCCTTCTGTTTGGATACTTTTGGATTA 58.833 33.333 0.00 0.00 37.61 1.75
2511 2649 7.010160 TCCTTCTGTTTGGATACTTTTGGATT 58.990 34.615 0.00 0.00 37.61 3.01
2512 2650 6.552008 TCCTTCTGTTTGGATACTTTTGGAT 58.448 36.000 0.00 0.00 37.61 3.41
2513 2651 5.947663 TCCTTCTGTTTGGATACTTTTGGA 58.052 37.500 0.00 0.00 37.61 3.53
2514 2652 6.840780 ATCCTTCTGTTTGGATACTTTTGG 57.159 37.500 0.00 0.00 40.90 3.28
2519 2657 8.470002 GCAAATTAATCCTTCTGTTTGGATACT 58.530 33.333 0.00 0.00 41.76 2.12
2520 2658 7.432252 CGCAAATTAATCCTTCTGTTTGGATAC 59.568 37.037 0.00 0.00 41.76 2.24
2521 2659 7.122055 ACGCAAATTAATCCTTCTGTTTGGATA 59.878 33.333 0.00 0.00 41.76 2.59
2522 2660 6.071391 ACGCAAATTAATCCTTCTGTTTGGAT 60.071 34.615 0.00 0.00 44.21 3.41
2523 2661 5.242838 ACGCAAATTAATCCTTCTGTTTGGA 59.757 36.000 0.00 0.00 36.72 3.53
2524 2662 5.469479 ACGCAAATTAATCCTTCTGTTTGG 58.531 37.500 0.00 0.00 0.00 3.28
2525 2663 8.020819 TCTAACGCAAATTAATCCTTCTGTTTG 58.979 33.333 0.00 0.00 0.00 2.93
2526 2664 8.106247 TCTAACGCAAATTAATCCTTCTGTTT 57.894 30.769 0.00 0.00 0.00 2.83
2527 2665 7.681939 TCTAACGCAAATTAATCCTTCTGTT 57.318 32.000 0.00 0.00 0.00 3.16
2528 2666 7.679638 GCATCTAACGCAAATTAATCCTTCTGT 60.680 37.037 0.00 0.00 0.00 3.41
2529 2667 6.634436 GCATCTAACGCAAATTAATCCTTCTG 59.366 38.462 0.00 0.00 0.00 3.02
2530 2668 6.318648 TGCATCTAACGCAAATTAATCCTTCT 59.681 34.615 0.00 0.00 36.17 2.85
2531 2669 6.494842 TGCATCTAACGCAAATTAATCCTTC 58.505 36.000 0.00 0.00 36.17 3.46
2532 2670 6.449635 TGCATCTAACGCAAATTAATCCTT 57.550 33.333 0.00 0.00 36.17 3.36
2533 2671 6.488006 AGATGCATCTAACGCAAATTAATCCT 59.512 34.615 27.73 0.00 43.84 3.24
2534 2672 6.672147 AGATGCATCTAACGCAAATTAATCC 58.328 36.000 27.73 0.00 43.84 3.01
2569 2707 4.416516 CCTCTTGGGTGGGTTAGATTTTT 58.583 43.478 0.00 0.00 0.00 1.94
2570 2708 4.047627 CCTCTTGGGTGGGTTAGATTTT 57.952 45.455 0.00 0.00 0.00 1.82
2571 2709 3.739401 CCTCTTGGGTGGGTTAGATTT 57.261 47.619 0.00 0.00 0.00 2.17
2583 2721 1.668419 CGGAATAAGCACCTCTTGGG 58.332 55.000 0.00 0.00 41.89 4.12
2584 2722 1.065418 ACCGGAATAAGCACCTCTTGG 60.065 52.381 9.46 0.00 36.25 3.61
2585 2723 2.403252 ACCGGAATAAGCACCTCTTG 57.597 50.000 9.46 0.00 36.25 3.02
2586 2724 3.518303 ACTAACCGGAATAAGCACCTCTT 59.482 43.478 9.46 0.00 38.79 2.85
2587 2725 3.105283 ACTAACCGGAATAAGCACCTCT 58.895 45.455 9.46 0.00 0.00 3.69
2588 2726 3.538634 ACTAACCGGAATAAGCACCTC 57.461 47.619 9.46 0.00 0.00 3.85
2589 2727 3.518303 AGAACTAACCGGAATAAGCACCT 59.482 43.478 9.46 0.00 0.00 4.00
2590 2728 3.870274 AGAACTAACCGGAATAAGCACC 58.130 45.455 9.46 0.00 0.00 5.01
2591 2729 5.176592 AGAAGAACTAACCGGAATAAGCAC 58.823 41.667 9.46 0.00 0.00 4.40
2592 2730 5.416271 AGAAGAACTAACCGGAATAAGCA 57.584 39.130 9.46 0.00 0.00 3.91
2593 2731 4.503370 CGAGAAGAACTAACCGGAATAAGC 59.497 45.833 9.46 0.00 0.00 3.09
2594 2732 5.041940 CCGAGAAGAACTAACCGGAATAAG 58.958 45.833 9.46 1.59 36.16 1.73
2595 2733 4.142093 CCCGAGAAGAACTAACCGGAATAA 60.142 45.833 9.46 0.00 36.16 1.40
2596 2734 3.382546 CCCGAGAAGAACTAACCGGAATA 59.617 47.826 9.46 0.00 36.16 1.75
2597 2735 2.167900 CCCGAGAAGAACTAACCGGAAT 59.832 50.000 9.46 0.00 36.16 3.01
2598 2736 1.547372 CCCGAGAAGAACTAACCGGAA 59.453 52.381 9.46 0.00 36.16 4.30
2599 2737 1.180029 CCCGAGAAGAACTAACCGGA 58.820 55.000 9.46 0.00 36.16 5.14
2600 2738 0.175073 CCCCGAGAAGAACTAACCGG 59.825 60.000 0.00 0.00 34.60 5.28
2601 2739 0.459759 GCCCCGAGAAGAACTAACCG 60.460 60.000 0.00 0.00 0.00 4.44
2602 2740 0.107800 GGCCCCGAGAAGAACTAACC 60.108 60.000 0.00 0.00 0.00 2.85
2603 2741 0.611714 TGGCCCCGAGAAGAACTAAC 59.388 55.000 0.00 0.00 0.00 2.34
2604 2742 1.580059 ATGGCCCCGAGAAGAACTAA 58.420 50.000 0.00 0.00 0.00 2.24
2605 2743 1.580059 AATGGCCCCGAGAAGAACTA 58.420 50.000 0.00 0.00 0.00 2.24
2606 2744 1.580059 TAATGGCCCCGAGAAGAACT 58.420 50.000 0.00 0.00 0.00 3.01
2607 2745 2.413310 TTAATGGCCCCGAGAAGAAC 57.587 50.000 0.00 0.00 0.00 3.01
2608 2746 3.443145 TTTTAATGGCCCCGAGAAGAA 57.557 42.857 0.00 0.00 0.00 2.52
2609 2747 3.443145 TTTTTAATGGCCCCGAGAAGA 57.557 42.857 0.00 0.00 0.00 2.87
2627 2765 5.248870 AGAGCGAGTGAAAAATGTGTTTT 57.751 34.783 0.00 0.00 39.15 2.43
2628 2766 4.900635 AGAGCGAGTGAAAAATGTGTTT 57.099 36.364 0.00 0.00 0.00 2.83
2629 2767 4.261197 GGAAGAGCGAGTGAAAAATGTGTT 60.261 41.667 0.00 0.00 0.00 3.32
2630 2768 3.251004 GGAAGAGCGAGTGAAAAATGTGT 59.749 43.478 0.00 0.00 0.00 3.72
2631 2769 3.499918 AGGAAGAGCGAGTGAAAAATGTG 59.500 43.478 0.00 0.00 0.00 3.21
2632 2770 3.499918 CAGGAAGAGCGAGTGAAAAATGT 59.500 43.478 0.00 0.00 0.00 2.71
2633 2771 3.669023 GCAGGAAGAGCGAGTGAAAAATG 60.669 47.826 0.00 0.00 0.00 2.32
2634 2772 2.485814 GCAGGAAGAGCGAGTGAAAAAT 59.514 45.455 0.00 0.00 0.00 1.82
2635 2773 1.873591 GCAGGAAGAGCGAGTGAAAAA 59.126 47.619 0.00 0.00 0.00 1.94
2636 2774 1.202639 TGCAGGAAGAGCGAGTGAAAA 60.203 47.619 0.00 0.00 33.85 2.29
2637 2775 0.392706 TGCAGGAAGAGCGAGTGAAA 59.607 50.000 0.00 0.00 33.85 2.69
2638 2776 0.610174 ATGCAGGAAGAGCGAGTGAA 59.390 50.000 0.00 0.00 33.85 3.18
2639 2777 0.174389 GATGCAGGAAGAGCGAGTGA 59.826 55.000 0.00 0.00 33.85 3.41
2640 2778 0.108472 TGATGCAGGAAGAGCGAGTG 60.108 55.000 0.00 0.00 33.85 3.51
2641 2779 0.829333 ATGATGCAGGAAGAGCGAGT 59.171 50.000 0.00 0.00 33.85 4.18
2642 2780 2.808523 TATGATGCAGGAAGAGCGAG 57.191 50.000 0.00 0.00 33.85 5.03
2643 2781 2.028658 GGATATGATGCAGGAAGAGCGA 60.029 50.000 0.00 0.00 33.85 4.93
2644 2782 2.028294 AGGATATGATGCAGGAAGAGCG 60.028 50.000 0.00 0.00 33.85 5.03
2645 2783 3.699411 AGGATATGATGCAGGAAGAGC 57.301 47.619 0.00 0.00 0.00 4.09
2646 2784 4.565236 GGGAAGGATATGATGCAGGAAGAG 60.565 50.000 0.00 0.00 0.00 2.85
2647 2785 3.328931 GGGAAGGATATGATGCAGGAAGA 59.671 47.826 0.00 0.00 0.00 2.87
2648 2786 3.073503 TGGGAAGGATATGATGCAGGAAG 59.926 47.826 0.00 0.00 0.00 3.46
2649 2787 3.055328 TGGGAAGGATATGATGCAGGAA 58.945 45.455 0.00 0.00 0.00 3.36
2650 2788 2.373169 GTGGGAAGGATATGATGCAGGA 59.627 50.000 0.00 0.00 0.00 3.86
2651 2789 2.374504 AGTGGGAAGGATATGATGCAGG 59.625 50.000 0.00 0.00 0.00 4.85
2652 2790 3.784511 AGTGGGAAGGATATGATGCAG 57.215 47.619 0.00 0.00 0.00 4.41
2653 2791 4.524802 AAAGTGGGAAGGATATGATGCA 57.475 40.909 0.00 0.00 0.00 3.96
2654 2792 5.506317 CGAAAAAGTGGGAAGGATATGATGC 60.506 44.000 0.00 0.00 0.00 3.91
2655 2793 5.822519 TCGAAAAAGTGGGAAGGATATGATG 59.177 40.000 0.00 0.00 0.00 3.07
2656 2794 6.001449 TCGAAAAAGTGGGAAGGATATGAT 57.999 37.500 0.00 0.00 0.00 2.45
2657 2795 5.429681 TCGAAAAAGTGGGAAGGATATGA 57.570 39.130 0.00 0.00 0.00 2.15
2658 2796 6.151144 AGTTTCGAAAAAGTGGGAAGGATATG 59.849 38.462 13.10 0.00 0.00 1.78
2659 2797 6.246163 AGTTTCGAAAAAGTGGGAAGGATAT 58.754 36.000 13.10 0.00 0.00 1.63
2660 2798 5.627135 AGTTTCGAAAAAGTGGGAAGGATA 58.373 37.500 13.10 0.00 0.00 2.59
2661 2799 4.470602 AGTTTCGAAAAAGTGGGAAGGAT 58.529 39.130 13.10 0.00 0.00 3.24
2662 2800 3.893521 AGTTTCGAAAAAGTGGGAAGGA 58.106 40.909 13.10 0.00 0.00 3.36
2663 2801 4.338400 AGAAGTTTCGAAAAAGTGGGAAGG 59.662 41.667 13.10 0.00 0.00 3.46
2664 2802 5.500645 AGAAGTTTCGAAAAAGTGGGAAG 57.499 39.130 13.10 0.00 0.00 3.46
2665 2803 4.034742 CGAGAAGTTTCGAAAAAGTGGGAA 59.965 41.667 13.10 0.00 43.03 3.97
2666 2804 3.558418 CGAGAAGTTTCGAAAAAGTGGGA 59.442 43.478 13.10 0.00 43.03 4.37
2667 2805 3.311596 ACGAGAAGTTTCGAAAAAGTGGG 59.688 43.478 13.10 4.09 43.03 4.61
2668 2806 4.515432 GACGAGAAGTTTCGAAAAAGTGG 58.485 43.478 13.10 3.58 43.03 4.00
2669 2807 4.270325 AGGACGAGAAGTTTCGAAAAAGTG 59.730 41.667 13.10 3.58 43.03 3.16
2670 2808 4.439968 AGGACGAGAAGTTTCGAAAAAGT 58.560 39.130 13.10 6.52 43.03 2.66
2671 2809 4.745620 AGAGGACGAGAAGTTTCGAAAAAG 59.254 41.667 13.10 3.41 43.03 2.27
2672 2810 4.690122 AGAGGACGAGAAGTTTCGAAAAA 58.310 39.130 13.10 0.00 43.03 1.94
2673 2811 4.296690 GAGAGGACGAGAAGTTTCGAAAA 58.703 43.478 13.10 0.00 43.03 2.29
2674 2812 3.305199 GGAGAGGACGAGAAGTTTCGAAA 60.305 47.826 6.47 6.47 43.03 3.46
2675 2813 2.228343 GGAGAGGACGAGAAGTTTCGAA 59.772 50.000 12.36 0.00 43.03 3.71
2676 2814 1.811359 GGAGAGGACGAGAAGTTTCGA 59.189 52.381 12.36 0.00 43.03 3.71
2677 2815 1.135344 GGGAGAGGACGAGAAGTTTCG 60.135 57.143 0.00 6.08 45.70 3.46
2678 2816 2.164827 GAGGGAGAGGACGAGAAGTTTC 59.835 54.545 0.00 0.00 0.00 2.78
2679 2817 2.172679 GAGGGAGAGGACGAGAAGTTT 58.827 52.381 0.00 0.00 0.00 2.66
2680 2818 1.617533 GGAGGGAGAGGACGAGAAGTT 60.618 57.143 0.00 0.00 0.00 2.66
2681 2819 0.033894 GGAGGGAGAGGACGAGAAGT 60.034 60.000 0.00 0.00 0.00 3.01
2682 2820 0.753848 GGGAGGGAGAGGACGAGAAG 60.754 65.000 0.00 0.00 0.00 2.85
2683 2821 1.215679 AGGGAGGGAGAGGACGAGAA 61.216 60.000 0.00 0.00 0.00 2.87
2684 2822 1.619975 AGGGAGGGAGAGGACGAGA 60.620 63.158 0.00 0.00 0.00 4.04
2685 2823 1.152839 GAGGGAGGGAGAGGACGAG 60.153 68.421 0.00 0.00 0.00 4.18
2686 2824 2.691779 GGAGGGAGGGAGAGGACGA 61.692 68.421 0.00 0.00 0.00 4.20
2687 2825 2.123640 GGAGGGAGGGAGAGGACG 60.124 72.222 0.00 0.00 0.00 4.79
2688 2826 2.284151 GGGAGGGAGGGAGAGGAC 59.716 72.222 0.00 0.00 0.00 3.85
2689 2827 2.015726 GAGGGAGGGAGGGAGAGGA 61.016 68.421 0.00 0.00 0.00 3.71
2690 2828 2.018086 AGAGGGAGGGAGGGAGAGG 61.018 68.421 0.00 0.00 0.00 3.69
2691 2829 1.541672 GAGAGGGAGGGAGGGAGAG 59.458 68.421 0.00 0.00 0.00 3.20
2692 2830 2.387772 CGAGAGGGAGGGAGGGAGA 61.388 68.421 0.00 0.00 0.00 3.71
2693 2831 2.197324 CGAGAGGGAGGGAGGGAG 59.803 72.222 0.00 0.00 0.00 4.30
2694 2832 4.144727 GCGAGAGGGAGGGAGGGA 62.145 72.222 0.00 0.00 0.00 4.20
2695 2833 4.465446 TGCGAGAGGGAGGGAGGG 62.465 72.222 0.00 0.00 0.00 4.30
2696 2834 3.151022 GTGCGAGAGGGAGGGAGG 61.151 72.222 0.00 0.00 0.00 4.30
2697 2835 2.043450 AGTGCGAGAGGGAGGGAG 60.043 66.667 0.00 0.00 0.00 4.30
2698 2836 2.363018 CAGTGCGAGAGGGAGGGA 60.363 66.667 0.00 0.00 0.00 4.20
2699 2837 4.154347 GCAGTGCGAGAGGGAGGG 62.154 72.222 0.00 0.00 0.00 4.30
2700 2838 4.154347 GGCAGTGCGAGAGGGAGG 62.154 72.222 9.45 0.00 0.00 4.30
2701 2839 4.154347 GGGCAGTGCGAGAGGGAG 62.154 72.222 9.45 0.00 0.00 4.30
2704 2842 2.501223 TTTACGGGCAGTGCGAGAGG 62.501 60.000 9.45 0.00 0.00 3.69
2705 2843 0.669318 TTTTACGGGCAGTGCGAGAG 60.669 55.000 9.45 2.66 0.00 3.20
2706 2844 0.669318 CTTTTACGGGCAGTGCGAGA 60.669 55.000 9.45 0.00 0.00 4.04
2707 2845 1.787847 CTTTTACGGGCAGTGCGAG 59.212 57.895 9.45 7.98 0.00 5.03
2708 2846 2.322081 GCTTTTACGGGCAGTGCGA 61.322 57.895 9.45 0.00 0.00 5.10
2709 2847 2.175811 GCTTTTACGGGCAGTGCG 59.824 61.111 9.45 0.00 0.00 5.34
2710 2848 2.175811 CGCTTTTACGGGCAGTGC 59.824 61.111 6.55 6.55 0.00 4.40
2711 2849 2.175811 GCGCTTTTACGGGCAGTG 59.824 61.111 0.00 0.00 41.86 3.66
2712 2850 3.053896 GGCGCTTTTACGGGCAGT 61.054 61.111 7.64 0.00 43.79 4.40
2713 2851 2.746277 AGGCGCTTTTACGGGCAG 60.746 61.111 7.64 0.00 43.79 4.85
2714 2852 2.744709 GAGGCGCTTTTACGGGCA 60.745 61.111 7.64 0.00 43.79 5.36
2715 2853 3.861263 CGAGGCGCTTTTACGGGC 61.861 66.667 7.64 0.00 41.57 6.13
2735 2873 2.288886 GGGTTAGATGGAGCACGGATAC 60.289 54.545 0.00 0.00 0.00 2.24
2736 2874 1.968493 GGGTTAGATGGAGCACGGATA 59.032 52.381 0.00 0.00 0.00 2.59
2737 2875 0.759346 GGGTTAGATGGAGCACGGAT 59.241 55.000 0.00 0.00 0.00 4.18
2738 2876 0.325296 AGGGTTAGATGGAGCACGGA 60.325 55.000 0.00 0.00 0.00 4.69
2739 2877 0.179073 CAGGGTTAGATGGAGCACGG 60.179 60.000 0.00 0.00 0.00 4.94
2740 2878 0.811616 GCAGGGTTAGATGGAGCACG 60.812 60.000 0.00 0.00 0.00 5.34
2741 2879 0.464554 GGCAGGGTTAGATGGAGCAC 60.465 60.000 0.00 0.00 0.00 4.40
2742 2880 0.913934 TGGCAGGGTTAGATGGAGCA 60.914 55.000 0.00 0.00 0.00 4.26
2743 2881 0.475906 ATGGCAGGGTTAGATGGAGC 59.524 55.000 0.00 0.00 0.00 4.70
2744 2882 1.072965 GGATGGCAGGGTTAGATGGAG 59.927 57.143 0.00 0.00 0.00 3.86
2745 2883 1.140312 GGATGGCAGGGTTAGATGGA 58.860 55.000 0.00 0.00 0.00 3.41
2746 2884 0.846015 TGGATGGCAGGGTTAGATGG 59.154 55.000 0.00 0.00 0.00 3.51
2747 2885 2.689983 GTTTGGATGGCAGGGTTAGATG 59.310 50.000 0.00 0.00 0.00 2.90
2748 2886 2.311542 TGTTTGGATGGCAGGGTTAGAT 59.688 45.455 0.00 0.00 0.00 1.98
2749 2887 1.707989 TGTTTGGATGGCAGGGTTAGA 59.292 47.619 0.00 0.00 0.00 2.10
2750 2888 1.818674 GTGTTTGGATGGCAGGGTTAG 59.181 52.381 0.00 0.00 0.00 2.34
2751 2889 1.145945 TGTGTTTGGATGGCAGGGTTA 59.854 47.619 0.00 0.00 0.00 2.85
2752 2890 0.105760 TGTGTTTGGATGGCAGGGTT 60.106 50.000 0.00 0.00 0.00 4.11
2753 2891 0.114954 ATGTGTTTGGATGGCAGGGT 59.885 50.000 0.00 0.00 0.00 4.34
2754 2892 1.269012 AATGTGTTTGGATGGCAGGG 58.731 50.000 0.00 0.00 0.00 4.45
2755 2893 3.405823 AAAATGTGTTTGGATGGCAGG 57.594 42.857 0.00 0.00 0.00 4.85
2756 2894 4.735662 CAAAAATGTGTTTGGATGGCAG 57.264 40.909 0.00 0.00 35.29 4.85
2764 2902 9.581099 AACTAACTCTAACCAAAAATGTGTTTG 57.419 29.630 0.00 0.00 38.07 2.93
2765 2903 9.797556 GAACTAACTCTAACCAAAAATGTGTTT 57.202 29.630 0.00 0.00 0.00 2.83
2766 2904 8.962679 TGAACTAACTCTAACCAAAAATGTGTT 58.037 29.630 0.00 0.00 0.00 3.32
2767 2905 8.514330 TGAACTAACTCTAACCAAAAATGTGT 57.486 30.769 0.00 0.00 0.00 3.72
2768 2906 8.076178 CCTGAACTAACTCTAACCAAAAATGTG 58.924 37.037 0.00 0.00 0.00 3.21
2769 2907 7.230712 CCCTGAACTAACTCTAACCAAAAATGT 59.769 37.037 0.00 0.00 0.00 2.71
2770 2908 7.230712 ACCCTGAACTAACTCTAACCAAAAATG 59.769 37.037 0.00 0.00 0.00 2.32
2771 2909 7.295340 ACCCTGAACTAACTCTAACCAAAAAT 58.705 34.615 0.00 0.00 0.00 1.82
2772 2910 6.665695 ACCCTGAACTAACTCTAACCAAAAA 58.334 36.000 0.00 0.00 0.00 1.94
2773 2911 6.256643 ACCCTGAACTAACTCTAACCAAAA 57.743 37.500 0.00 0.00 0.00 2.44
2774 2912 5.899631 ACCCTGAACTAACTCTAACCAAA 57.100 39.130 0.00 0.00 0.00 3.28
2775 2913 5.899631 AACCCTGAACTAACTCTAACCAA 57.100 39.130 0.00 0.00 0.00 3.67
2776 2914 6.999705 TTAACCCTGAACTAACTCTAACCA 57.000 37.500 0.00 0.00 0.00 3.67
2777 2915 8.859236 AAATTAACCCTGAACTAACTCTAACC 57.141 34.615 0.00 0.00 0.00 2.85
2781 2919 8.666821 ACCTTAAATTAACCCTGAACTAACTCT 58.333 33.333 0.00 0.00 0.00 3.24
2782 2920 8.859236 ACCTTAAATTAACCCTGAACTAACTC 57.141 34.615 0.00 0.00 0.00 3.01
2827 2965 9.757227 CCCTCTTTGATACTCTAACTCAATTAG 57.243 37.037 0.00 0.00 41.64 1.73
2828 2966 8.204836 GCCCTCTTTGATACTCTAACTCAATTA 58.795 37.037 0.00 0.00 0.00 1.40
2829 2967 7.051000 GCCCTCTTTGATACTCTAACTCAATT 58.949 38.462 0.00 0.00 0.00 2.32
2830 2968 6.408662 GGCCCTCTTTGATACTCTAACTCAAT 60.409 42.308 0.00 0.00 0.00 2.57
2831 2969 5.104900 GGCCCTCTTTGATACTCTAACTCAA 60.105 44.000 0.00 0.00 0.00 3.02
2832 2970 4.406003 GGCCCTCTTTGATACTCTAACTCA 59.594 45.833 0.00 0.00 0.00 3.41
2833 2971 4.500035 CGGCCCTCTTTGATACTCTAACTC 60.500 50.000 0.00 0.00 0.00 3.01
2834 2972 3.385111 CGGCCCTCTTTGATACTCTAACT 59.615 47.826 0.00 0.00 0.00 2.24
2835 2973 3.132467 ACGGCCCTCTTTGATACTCTAAC 59.868 47.826 0.00 0.00 0.00 2.34
2836 2974 3.371965 ACGGCCCTCTTTGATACTCTAA 58.628 45.455 0.00 0.00 0.00 2.10
2837 2975 2.957006 GACGGCCCTCTTTGATACTCTA 59.043 50.000 0.00 0.00 0.00 2.43
2838 2976 1.757699 GACGGCCCTCTTTGATACTCT 59.242 52.381 0.00 0.00 0.00 3.24
2839 2977 1.536284 CGACGGCCCTCTTTGATACTC 60.536 57.143 0.00 0.00 0.00 2.59
2840 2978 0.460311 CGACGGCCCTCTTTGATACT 59.540 55.000 0.00 0.00 0.00 2.12
2841 2979 0.175073 ACGACGGCCCTCTTTGATAC 59.825 55.000 0.00 0.00 0.00 2.24
2842 2980 0.899720 AACGACGGCCCTCTTTGATA 59.100 50.000 0.00 0.00 0.00 2.15
2843 2981 0.673644 CAACGACGGCCCTCTTTGAT 60.674 55.000 13.50 0.00 0.00 2.57
2844 2982 1.301401 CAACGACGGCCCTCTTTGA 60.301 57.895 13.50 0.00 0.00 2.69
2845 2983 2.966309 GCAACGACGGCCCTCTTTG 61.966 63.158 14.17 14.17 0.00 2.77
2846 2984 2.668550 GCAACGACGGCCCTCTTT 60.669 61.111 0.00 0.00 0.00 2.52
2847 2985 2.951475 TTTGCAACGACGGCCCTCTT 62.951 55.000 0.00 0.00 0.00 2.85
2848 2986 2.748058 ATTTGCAACGACGGCCCTCT 62.748 55.000 0.00 0.00 0.00 3.69
2849 2987 2.332654 ATTTGCAACGACGGCCCTC 61.333 57.895 0.00 0.00 0.00 4.30
2850 2988 2.282180 ATTTGCAACGACGGCCCT 60.282 55.556 0.00 0.00 0.00 5.19
2851 2989 2.126502 CATTTGCAACGACGGCCC 60.127 61.111 0.00 0.00 0.00 5.80
2852 2990 2.126502 CCATTTGCAACGACGGCC 60.127 61.111 0.00 0.00 0.00 6.13
2853 2991 1.154225 CTCCATTTGCAACGACGGC 60.154 57.895 0.00 0.00 0.00 5.68
2854 2992 1.501741 CCTCCATTTGCAACGACGG 59.498 57.895 0.00 0.00 0.00 4.79
2867 3005 2.032528 CAAAGCAGACCGCCTCCA 59.967 61.111 0.00 0.00 44.04 3.86
2922 3063 2.371841 TGCAGAAGCTTCCCAAGACTTA 59.628 45.455 22.81 0.00 42.74 2.24
2927 3068 0.239347 CGTTGCAGAAGCTTCCCAAG 59.761 55.000 22.81 14.56 42.74 3.61
3032 3173 2.484062 CCGAGCAATGGCCACATCC 61.484 63.158 8.16 0.00 42.56 3.51
3042 3183 0.515564 CGAACCGAAAACCGAGCAAT 59.484 50.000 0.00 0.00 41.76 3.56
3074 3215 2.910688 TTTCTCGCAGAAGTCAAGGT 57.089 45.000 0.11 0.00 35.37 3.50
3077 3218 5.947228 ATGATTTTTCTCGCAGAAGTCAA 57.053 34.783 11.06 4.05 35.37 3.18
3085 3226 4.748102 GGGTCGTATATGATTTTTCTCGCA 59.252 41.667 0.00 0.00 0.00 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.