Multiple sequence alignment - TraesCS7B01G257000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G257000 chr7B 100.000 3829 0 0 1 3829 476642038 476638210 0.000000e+00 7071.0
1 TraesCS7B01G257000 chr7B 93.728 287 17 1 279 564 139049752 139049466 2.730000e-116 429.0
2 TraesCS7B01G257000 chr7D 94.125 2298 61 29 833 3097 452998423 452996167 0.000000e+00 3428.0
3 TraesCS7B01G257000 chr7D 92.832 279 20 0 283 561 403145040 403144762 4.610000e-109 405.0
4 TraesCS7B01G257000 chr7A 90.905 2144 98 40 834 2908 544152540 544154655 0.000000e+00 2789.0
5 TraesCS7B01G257000 chr7A 90.385 52 5 0 625 676 544152157 544152208 6.860000e-08 69.4
6 TraesCS7B01G257000 chr2B 96.879 737 22 1 3093 3829 232742449 232743184 0.000000e+00 1232.0
7 TraesCS7B01G257000 chr2B 96.871 735 23 0 3095 3829 23676610 23675876 0.000000e+00 1230.0
8 TraesCS7B01G257000 chr2B 96.185 734 28 0 3096 3829 91832391 91831658 0.000000e+00 1201.0
9 TraesCS7B01G257000 chr6B 96.735 735 24 0 3095 3829 77619626 77620360 0.000000e+00 1225.0
10 TraesCS7B01G257000 chr6B 96.501 743 23 3 3088 3829 407167967 407168707 0.000000e+00 1225.0
11 TraesCS7B01G257000 chr6B 96.463 735 25 1 3095 3829 586004267 586005000 0.000000e+00 1212.0
12 TraesCS7B01G257000 chr6B 83.696 92 5 9 2053 2136 114054784 114054695 1.140000e-10 78.7
13 TraesCS7B01G257000 chr6B 85.714 70 9 1 745 814 575939770 575939702 5.310000e-09 73.1
14 TraesCS7B01G257000 chr5B 96.735 735 24 0 3095 3829 341066793 341066059 0.000000e+00 1225.0
15 TraesCS7B01G257000 chr1B 96.190 735 24 2 3095 3829 508565167 508564437 0.000000e+00 1199.0
16 TraesCS7B01G257000 chr1B 93.238 281 19 0 283 563 470484047 470484327 7.650000e-112 414.0
17 TraesCS7B01G257000 chr1B 91.815 281 23 0 281 561 336935404 336935684 3.590000e-105 392.0
18 TraesCS7B01G257000 chr3B 95.782 735 30 1 3095 3829 30343901 30343168 0.000000e+00 1184.0
19 TraesCS7B01G257000 chr3B 78.246 855 144 37 1669 2490 125523911 125523066 9.490000e-141 510.0
20 TraesCS7B01G257000 chr3B 77.921 856 146 38 1669 2489 125779416 125780263 9.560000e-136 494.0
21 TraesCS7B01G257000 chr3B 74.566 346 63 22 1145 1473 125551851 125552188 1.120000e-25 128.0
22 TraesCS7B01G257000 chr1D 78.478 841 154 25 1668 2490 117400296 117399465 3.390000e-145 525.0
23 TraesCS7B01G257000 chr1D 81.203 133 23 2 1341 1472 65749892 65750023 5.230000e-19 106.0
24 TraesCS7B01G257000 chr3D 78.463 859 135 44 1669 2490 79420927 79420082 2.040000e-142 516.0
25 TraesCS7B01G257000 chr3D 77.739 867 148 39 1669 2499 79504707 79505564 1.240000e-134 490.0
26 TraesCS7B01G257000 chr3D 77.582 852 157 31 1669 2491 79428523 79429369 5.750000e-133 484.0
27 TraesCS7B01G257000 chr3D 93.455 275 18 0 285 559 193949494 193949220 3.560000e-110 409.0
28 TraesCS7B01G257000 chr3D 85.455 55 3 5 40 92 575735382 575735433 7.000000e-03 52.8
29 TraesCS7B01G257000 chr1A 78.188 839 160 21 1668 2490 129004475 129003644 7.340000e-142 514.0
30 TraesCS7B01G257000 chr3A 77.687 856 147 37 1669 2490 93042429 93041584 2.070000e-132 483.0
31 TraesCS7B01G257000 chr3A 77.404 863 155 37 1669 2499 93337803 93338657 9.620000e-131 477.0
32 TraesCS7B01G257000 chr3A 76.897 870 150 39 1669 2499 93264201 93265058 2.710000e-121 446.0
33 TraesCS7B01G257000 chr3A 86.076 237 31 2 2256 2491 93265667 93265902 1.770000e-63 254.0
34 TraesCS7B01G257000 chr3A 81.752 137 21 4 2365 2499 93336291 93336425 1.120000e-20 111.0
35 TraesCS7B01G257000 chr3A 84.783 92 4 9 2053 2136 468728529 468728440 2.450000e-12 84.2
36 TraesCS7B01G257000 chr6A 93.548 279 18 0 283 561 346954231 346953953 2.130000e-112 416.0
37 TraesCS7B01G257000 chr6A 92.473 279 20 1 283 561 230133156 230132879 7.710000e-107 398.0
38 TraesCS7B01G257000 chr6A 86.567 67 8 1 202 268 569996790 569996855 5.310000e-09 73.1
39 TraesCS7B01G257000 chr4A 91.638 287 22 2 276 561 246002460 246002175 2.770000e-106 396.0
40 TraesCS7B01G257000 chr2D 92.446 278 17 2 285 559 239094724 239095000 9.970000e-106 394.0
41 TraesCS7B01G257000 chr5A 79.528 127 24 2 161 286 143344327 143344452 5.270000e-14 89.8
42 TraesCS7B01G257000 chr4D 87.671 73 8 1 1 72 339475943 339476015 2.450000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G257000 chr7B 476638210 476642038 3828 True 7071.0 7071 100.0000 1 3829 1 chr7B.!!$R2 3828
1 TraesCS7B01G257000 chr7D 452996167 452998423 2256 True 3428.0 3428 94.1250 833 3097 1 chr7D.!!$R2 2264
2 TraesCS7B01G257000 chr7A 544152157 544154655 2498 False 1429.2 2789 90.6450 625 2908 2 chr7A.!!$F1 2283
3 TraesCS7B01G257000 chr2B 232742449 232743184 735 False 1232.0 1232 96.8790 3093 3829 1 chr2B.!!$F1 736
4 TraesCS7B01G257000 chr2B 23675876 23676610 734 True 1230.0 1230 96.8710 3095 3829 1 chr2B.!!$R1 734
5 TraesCS7B01G257000 chr2B 91831658 91832391 733 True 1201.0 1201 96.1850 3096 3829 1 chr2B.!!$R2 733
6 TraesCS7B01G257000 chr6B 77619626 77620360 734 False 1225.0 1225 96.7350 3095 3829 1 chr6B.!!$F1 734
7 TraesCS7B01G257000 chr6B 407167967 407168707 740 False 1225.0 1225 96.5010 3088 3829 1 chr6B.!!$F2 741
8 TraesCS7B01G257000 chr6B 586004267 586005000 733 False 1212.0 1212 96.4630 3095 3829 1 chr6B.!!$F3 734
9 TraesCS7B01G257000 chr5B 341066059 341066793 734 True 1225.0 1225 96.7350 3095 3829 1 chr5B.!!$R1 734
10 TraesCS7B01G257000 chr1B 508564437 508565167 730 True 1199.0 1199 96.1900 3095 3829 1 chr1B.!!$R1 734
11 TraesCS7B01G257000 chr3B 30343168 30343901 733 True 1184.0 1184 95.7820 3095 3829 1 chr3B.!!$R1 734
12 TraesCS7B01G257000 chr3B 125523066 125523911 845 True 510.0 510 78.2460 1669 2490 1 chr3B.!!$R2 821
13 TraesCS7B01G257000 chr3B 125779416 125780263 847 False 494.0 494 77.9210 1669 2489 1 chr3B.!!$F2 820
14 TraesCS7B01G257000 chr1D 117399465 117400296 831 True 525.0 525 78.4780 1668 2490 1 chr1D.!!$R1 822
15 TraesCS7B01G257000 chr3D 79420082 79420927 845 True 516.0 516 78.4630 1669 2490 1 chr3D.!!$R1 821
16 TraesCS7B01G257000 chr3D 79504707 79505564 857 False 490.0 490 77.7390 1669 2499 1 chr3D.!!$F2 830
17 TraesCS7B01G257000 chr3D 79428523 79429369 846 False 484.0 484 77.5820 1669 2491 1 chr3D.!!$F1 822
18 TraesCS7B01G257000 chr1A 129003644 129004475 831 True 514.0 514 78.1880 1668 2490 1 chr1A.!!$R1 822
19 TraesCS7B01G257000 chr3A 93041584 93042429 845 True 483.0 483 77.6870 1669 2490 1 chr3A.!!$R1 821
20 TraesCS7B01G257000 chr3A 93264201 93265902 1701 False 350.0 446 81.4865 1669 2499 2 chr3A.!!$F1 830
21 TraesCS7B01G257000 chr3A 93336291 93338657 2366 False 294.0 477 79.5780 1669 2499 2 chr3A.!!$F2 830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
599 600 0.032813 TTACTCCTCCGAACGGGGAT 60.033 55.0 15.07 10.99 38.23 3.85 F
600 601 0.032813 TACTCCTCCGAACGGGGATT 60.033 55.0 15.07 14.42 38.23 3.01 F
956 1177 0.110688 CGCACACACACATACAGCAC 60.111 55.0 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1634 1883 0.040958 CCGAGCAATTAAGCGCCATC 60.041 55.0 2.29 0.0 40.15 3.51 R
2520 2801 0.514255 CTGCAACTGATCGTGTGGTG 59.486 55.0 0.00 0.0 0.00 4.17 R
2944 3277 0.036671 ACCTTTTAACCCCGCGAGAG 60.037 55.0 8.23 0.0 0.00 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.510388 AGATTCGAAGCAATCTGACGA 57.490 42.857 16.78 0.00 40.88 4.20
21 22 3.849911 AGATTCGAAGCAATCTGACGAA 58.150 40.909 16.78 0.00 40.88 3.85
23 24 4.785669 ATTCGAAGCAATCTGACGAATC 57.214 40.909 3.35 0.00 42.74 2.52
25 26 1.256376 CGAAGCAATCTGACGAATCGG 59.744 52.381 7.80 0.00 0.00 4.18
28 29 0.579156 GCAATCTGACGAATCGGCTC 59.421 55.000 10.78 0.00 35.04 4.70
29 30 1.804372 GCAATCTGACGAATCGGCTCT 60.804 52.381 10.78 0.00 35.04 4.09
30 31 1.857217 CAATCTGACGAATCGGCTCTG 59.143 52.381 10.78 1.95 35.04 3.35
31 32 0.387202 ATCTGACGAATCGGCTCTGG 59.613 55.000 10.78 0.00 35.04 3.86
32 33 0.965866 TCTGACGAATCGGCTCTGGT 60.966 55.000 10.78 0.00 35.04 4.00
34 35 1.248101 TGACGAATCGGCTCTGGTGA 61.248 55.000 10.78 0.00 35.04 4.02
35 36 0.802607 GACGAATCGGCTCTGGTGAC 60.803 60.000 7.80 0.00 0.00 3.67
47 48 1.901820 TGGTGACAGTGACGGTGTT 59.098 52.632 0.00 0.00 35.01 3.32
48 49 0.250793 TGGTGACAGTGACGGTGTTT 59.749 50.000 0.00 0.00 35.01 2.83
49 50 0.935196 GGTGACAGTGACGGTGTTTC 59.065 55.000 0.00 0.00 0.00 2.78
50 51 1.647346 GTGACAGTGACGGTGTTTCA 58.353 50.000 0.00 0.00 0.00 2.69
51 52 1.326548 GTGACAGTGACGGTGTTTCAC 59.673 52.381 0.00 0.00 43.24 3.18
64 65 0.168128 GTTTCACCTTGATTCCGGCG 59.832 55.000 0.00 0.00 0.00 6.46
65 66 0.035598 TTTCACCTTGATTCCGGCGA 59.964 50.000 9.30 0.00 0.00 5.54
66 67 0.672401 TTCACCTTGATTCCGGCGAC 60.672 55.000 9.30 0.00 0.00 5.19
85 86 4.636435 ACGACGGGGGCCAAACAG 62.636 66.667 4.39 0.00 0.00 3.16
97 98 0.670162 CCAAACAGGCTCAGTGTTGG 59.330 55.000 0.00 0.00 38.17 3.77
99 100 0.468029 AAACAGGCTCAGTGTTGGGG 60.468 55.000 0.00 0.00 38.17 4.96
100 101 2.034687 CAGGCTCAGTGTTGGGGG 59.965 66.667 0.00 0.00 0.00 5.40
101 102 3.971702 AGGCTCAGTGTTGGGGGC 61.972 66.667 0.00 0.00 0.00 5.80
103 104 4.284550 GCTCAGTGTTGGGGGCCA 62.285 66.667 4.39 0.00 0.00 5.36
104 105 2.520458 CTCAGTGTTGGGGGCCAA 59.480 61.111 4.39 0.00 41.69 4.52
106 107 2.601367 CAGTGTTGGGGGCCAAGG 60.601 66.667 4.39 0.00 44.82 3.61
107 108 3.914713 AGTGTTGGGGGCCAAGGG 61.915 66.667 4.39 0.00 44.82 3.95
108 109 3.909651 GTGTTGGGGGCCAAGGGA 61.910 66.667 4.39 0.00 44.82 4.20
110 111 4.382541 GTTGGGGGCCAAGGGAGG 62.383 72.222 4.39 0.00 44.82 4.30
118 119 3.500635 CCAAGGGAGGCAAGAGGT 58.499 61.111 0.00 0.00 0.00 3.85
119 120 2.696864 CCAAGGGAGGCAAGAGGTA 58.303 57.895 0.00 0.00 0.00 3.08
120 121 0.543749 CCAAGGGAGGCAAGAGGTAG 59.456 60.000 0.00 0.00 0.00 3.18
121 122 0.107459 CAAGGGAGGCAAGAGGTAGC 60.107 60.000 0.00 0.00 0.00 3.58
122 123 1.617947 AAGGGAGGCAAGAGGTAGCG 61.618 60.000 0.00 0.00 0.00 4.26
123 124 2.501610 GGAGGCAAGAGGTAGCGG 59.498 66.667 0.00 0.00 0.00 5.52
124 125 2.202946 GAGGCAAGAGGTAGCGGC 60.203 66.667 0.00 0.00 0.00 6.53
125 126 3.003173 AGGCAAGAGGTAGCGGCA 61.003 61.111 1.45 0.00 0.00 5.69
126 127 2.512515 GGCAAGAGGTAGCGGCAG 60.513 66.667 1.45 0.00 0.00 4.85
127 128 2.512515 GCAAGAGGTAGCGGCAGG 60.513 66.667 1.45 0.00 0.00 4.85
129 130 3.787001 AAGAGGTAGCGGCAGGGC 61.787 66.667 1.45 0.00 0.00 5.19
160 161 3.117171 GCAGTGGCGAGCAGTGAG 61.117 66.667 0.00 0.00 0.00 3.51
161 162 2.433838 CAGTGGCGAGCAGTGAGG 60.434 66.667 0.00 0.00 0.00 3.86
162 163 4.385405 AGTGGCGAGCAGTGAGGC 62.385 66.667 0.00 0.00 0.00 4.70
166 167 4.427661 GCGAGCAGTGAGGCGAGT 62.428 66.667 0.00 0.00 39.27 4.18
168 169 2.965783 GAGCAGTGAGGCGAGTGA 59.034 61.111 0.00 0.00 39.27 3.41
169 170 1.153862 GAGCAGTGAGGCGAGTGAG 60.154 63.158 0.00 0.00 39.27 3.51
172 173 1.510383 CAGTGAGGCGAGTGAGAGG 59.490 63.158 0.00 0.00 0.00 3.69
173 174 2.183046 GTGAGGCGAGTGAGAGGC 59.817 66.667 0.00 0.00 0.00 4.70
174 175 2.036414 TGAGGCGAGTGAGAGGCT 59.964 61.111 0.00 0.00 46.28 4.58
176 177 2.358619 AGGCGAGTGAGAGGCTCT 59.641 61.111 18.80 18.80 39.09 4.09
177 178 2.051518 AGGCGAGTGAGAGGCTCTG 61.052 63.158 24.21 8.18 39.09 3.35
178 179 2.347322 GGCGAGTGAGAGGCTCTGT 61.347 63.158 24.21 6.00 0.00 3.41
179 180 1.589113 GCGAGTGAGAGGCTCTGTT 59.411 57.895 24.21 6.74 0.00 3.16
181 182 1.606737 GCGAGTGAGAGGCTCTGTTTT 60.607 52.381 24.21 4.35 0.00 2.43
182 183 2.760374 CGAGTGAGAGGCTCTGTTTTT 58.240 47.619 24.21 2.41 0.00 1.94
199 200 3.671008 TTTTTACTCCGAGCAGTAGCA 57.329 42.857 0.00 0.00 45.49 3.49
201 202 0.456221 TTACTCCGAGCAGTAGCAGC 59.544 55.000 0.00 0.00 45.49 5.25
202 203 1.384989 TACTCCGAGCAGTAGCAGCC 61.385 60.000 0.00 0.00 45.49 4.85
204 205 3.826754 CCGAGCAGTAGCAGCCGA 61.827 66.667 0.00 0.00 45.49 5.54
205 206 2.278466 CGAGCAGTAGCAGCCGAG 60.278 66.667 0.00 0.00 45.49 4.63
207 208 1.715862 CGAGCAGTAGCAGCCGAGTA 61.716 60.000 0.00 0.00 45.49 2.59
208 209 0.456221 GAGCAGTAGCAGCCGAGTAA 59.544 55.000 0.00 0.00 45.49 2.24
209 210 0.895530 AGCAGTAGCAGCCGAGTAAA 59.104 50.000 0.00 0.00 45.49 2.01
210 211 1.482593 AGCAGTAGCAGCCGAGTAAAT 59.517 47.619 0.00 0.00 45.49 1.40
211 212 2.693591 AGCAGTAGCAGCCGAGTAAATA 59.306 45.455 0.00 0.00 45.49 1.40
213 214 4.523173 AGCAGTAGCAGCCGAGTAAATATA 59.477 41.667 0.00 0.00 45.49 0.86
214 215 4.859798 GCAGTAGCAGCCGAGTAAATATAG 59.140 45.833 0.00 0.00 41.58 1.31
215 216 5.403246 CAGTAGCAGCCGAGTAAATATAGG 58.597 45.833 0.00 0.00 0.00 2.57
217 218 3.507411 AGCAGCCGAGTAAATATAGGGA 58.493 45.455 0.00 0.00 0.00 4.20
218 219 3.258622 AGCAGCCGAGTAAATATAGGGAC 59.741 47.826 0.00 0.00 0.00 4.46
221 222 3.833070 AGCCGAGTAAATATAGGGACAGG 59.167 47.826 0.00 0.00 0.00 4.00
222 223 3.830755 GCCGAGTAAATATAGGGACAGGA 59.169 47.826 0.00 0.00 0.00 3.86
224 225 5.655532 GCCGAGTAAATATAGGGACAGGATA 59.344 44.000 0.00 0.00 0.00 2.59
225 226 6.183360 GCCGAGTAAATATAGGGACAGGATAG 60.183 46.154 0.00 0.00 0.00 2.08
226 227 6.321690 CCGAGTAAATATAGGGACAGGATAGG 59.678 46.154 0.00 0.00 0.00 2.57
228 229 5.657302 AGTAAATATAGGGACAGGATAGGCG 59.343 44.000 0.00 0.00 0.00 5.52
230 231 2.930109 ATAGGGACAGGATAGGCGAT 57.070 50.000 0.00 0.00 0.00 4.58
231 232 1.924731 TAGGGACAGGATAGGCGATG 58.075 55.000 0.00 0.00 0.00 3.84
233 234 0.832135 GGGACAGGATAGGCGATGGA 60.832 60.000 0.00 0.00 0.00 3.41
236 237 0.188587 ACAGGATAGGCGATGGAGGA 59.811 55.000 0.00 0.00 0.00 3.71
237 238 1.203237 ACAGGATAGGCGATGGAGGAT 60.203 52.381 0.00 0.00 0.00 3.24
238 239 2.043115 ACAGGATAGGCGATGGAGGATA 59.957 50.000 0.00 0.00 0.00 2.59
239 240 3.099905 CAGGATAGGCGATGGAGGATAA 58.900 50.000 0.00 0.00 0.00 1.75
240 241 3.708631 CAGGATAGGCGATGGAGGATAAT 59.291 47.826 0.00 0.00 0.00 1.28
241 242 4.163078 CAGGATAGGCGATGGAGGATAATT 59.837 45.833 0.00 0.00 0.00 1.40
245 246 7.037586 AGGATAGGCGATGGAGGATAATTTTTA 60.038 37.037 0.00 0.00 0.00 1.52
246 247 7.065923 GGATAGGCGATGGAGGATAATTTTTAC 59.934 40.741 0.00 0.00 0.00 2.01
247 248 5.941788 AGGCGATGGAGGATAATTTTTACT 58.058 37.500 0.00 0.00 0.00 2.24
248 249 5.998363 AGGCGATGGAGGATAATTTTTACTC 59.002 40.000 0.00 0.00 0.00 2.59
249 250 5.181433 GGCGATGGAGGATAATTTTTACTCC 59.819 44.000 10.36 10.36 46.14 3.85
256 257 8.447924 GGAGGATAATTTTTACTCCACTAACC 57.552 38.462 11.96 0.00 45.45 2.85
257 258 7.226128 GGAGGATAATTTTTACTCCACTAACCG 59.774 40.741 11.96 0.00 45.45 4.44
264 265 7.495135 TTTTTACTCCACTAACCGTTTTAGG 57.505 36.000 6.13 0.00 37.30 2.69
265 266 3.690475 ACTCCACTAACCGTTTTAGGG 57.310 47.619 6.13 2.11 35.02 3.53
266 267 3.242011 ACTCCACTAACCGTTTTAGGGA 58.758 45.455 5.13 7.54 35.02 4.20
267 268 3.842436 ACTCCACTAACCGTTTTAGGGAT 59.158 43.478 5.13 0.00 35.02 3.85
268 269 4.081254 ACTCCACTAACCGTTTTAGGGATC 60.081 45.833 5.13 0.00 35.02 3.36
269 270 3.119029 TCCACTAACCGTTTTAGGGATCG 60.119 47.826 5.13 0.00 35.02 3.69
270 271 3.119029 CCACTAACCGTTTTAGGGATCGA 60.119 47.826 5.13 0.00 35.02 3.59
271 272 3.861689 CACTAACCGTTTTAGGGATCGAC 59.138 47.826 0.00 0.00 35.02 4.20
273 274 4.949856 ACTAACCGTTTTAGGGATCGACTA 59.050 41.667 0.00 0.00 35.02 2.59
274 275 4.382345 AACCGTTTTAGGGATCGACTAG 57.618 45.455 0.00 0.00 35.02 2.57
275 276 3.624777 ACCGTTTTAGGGATCGACTAGA 58.375 45.455 0.00 0.00 35.02 2.43
277 278 4.037684 ACCGTTTTAGGGATCGACTAGATG 59.962 45.833 0.00 0.00 35.61 2.90
278 279 3.982058 CGTTTTAGGGATCGACTAGATGC 59.018 47.826 0.00 0.00 45.62 3.91
280 281 4.855715 TTTAGGGATCGACTAGATGCTG 57.144 45.455 0.00 0.00 45.63 4.41
281 282 1.626686 AGGGATCGACTAGATGCTGG 58.373 55.000 0.00 0.00 45.63 4.85
282 283 1.133325 AGGGATCGACTAGATGCTGGT 60.133 52.381 0.00 0.00 45.63 4.00
283 284 1.689273 GGGATCGACTAGATGCTGGTT 59.311 52.381 0.00 0.00 45.63 3.67
287 288 1.681793 TCGACTAGATGCTGGTTAGGC 59.318 52.381 0.00 0.00 0.00 3.93
290 291 1.765314 ACTAGATGCTGGTTAGGCTGG 59.235 52.381 0.00 0.00 0.00 4.85
291 292 1.765314 CTAGATGCTGGTTAGGCTGGT 59.235 52.381 0.00 0.00 0.00 4.00
292 293 0.543749 AGATGCTGGTTAGGCTGGTC 59.456 55.000 0.00 0.00 0.00 4.02
294 295 1.553690 ATGCTGGTTAGGCTGGTCGT 61.554 55.000 0.00 0.00 0.00 4.34
296 297 0.248289 GCTGGTTAGGCTGGTCGTAA 59.752 55.000 0.00 0.00 0.00 3.18
297 298 1.134491 GCTGGTTAGGCTGGTCGTAAT 60.134 52.381 0.00 0.00 0.00 1.89
298 299 2.550978 CTGGTTAGGCTGGTCGTAATG 58.449 52.381 0.00 0.00 0.00 1.90
299 300 1.208535 TGGTTAGGCTGGTCGTAATGG 59.791 52.381 0.00 0.00 0.00 3.16
300 301 1.474498 GGTTAGGCTGGTCGTAATGGG 60.474 57.143 0.00 0.00 0.00 4.00
302 303 1.410004 TAGGCTGGTCGTAATGGGAG 58.590 55.000 0.00 0.00 0.00 4.30
304 305 1.117150 GGCTGGTCGTAATGGGAGTA 58.883 55.000 0.00 0.00 0.00 2.59
307 308 2.364324 GCTGGTCGTAATGGGAGTATCA 59.636 50.000 0.00 0.00 36.25 2.15
308 309 3.006967 GCTGGTCGTAATGGGAGTATCAT 59.993 47.826 0.00 0.00 36.25 2.45
311 312 6.096423 GCTGGTCGTAATGGGAGTATCATATA 59.904 42.308 0.00 0.00 36.25 0.86
313 314 8.007405 TGGTCGTAATGGGAGTATCATATATG 57.993 38.462 6.36 6.36 36.25 1.78
316 317 9.128404 GTCGTAATGGGAGTATCATATATGGTA 57.872 37.037 12.78 7.25 36.25 3.25
317 318 9.877222 TCGTAATGGGAGTATCATATATGGTAT 57.123 33.333 12.78 2.82 36.25 2.73
322 323 7.966812 TGGGAGTATCATATATGGTATCATGC 58.033 38.462 12.78 5.98 36.25 4.06
323 324 7.568366 TGGGAGTATCATATATGGTATCATGCA 59.432 37.037 12.78 0.00 36.25 3.96
324 325 8.600668 GGGAGTATCATATATGGTATCATGCAT 58.399 37.037 12.78 0.00 36.25 3.96
325 326 9.433153 GGAGTATCATATATGGTATCATGCATG 57.567 37.037 21.07 21.07 36.25 4.06
326 327 8.843885 AGTATCATATATGGTATCATGCATGC 57.156 34.615 22.25 11.82 34.96 4.06
331 332 2.440517 TGGTATCATGCATGCCAACT 57.559 45.000 22.25 6.33 43.86 3.16
332 333 3.574354 TGGTATCATGCATGCCAACTA 57.426 42.857 22.25 13.62 43.86 2.24
334 335 3.136260 TGGTATCATGCATGCCAACTAGA 59.864 43.478 22.25 2.12 43.86 2.43
335 336 3.499918 GGTATCATGCATGCCAACTAGAC 59.500 47.826 22.25 10.57 37.22 2.59
336 337 3.572632 ATCATGCATGCCAACTAGACT 57.427 42.857 22.25 0.00 0.00 3.24
339 340 4.081406 TCATGCATGCCAACTAGACTTTT 58.919 39.130 22.25 0.00 0.00 2.27
340 341 4.523943 TCATGCATGCCAACTAGACTTTTT 59.476 37.500 22.25 0.00 0.00 1.94
341 342 4.241590 TGCATGCCAACTAGACTTTTTG 57.758 40.909 16.68 0.00 0.00 2.44
342 343 3.005684 TGCATGCCAACTAGACTTTTTGG 59.994 43.478 16.68 9.47 42.43 3.28
343 344 3.255642 GCATGCCAACTAGACTTTTTGGA 59.744 43.478 6.36 4.91 42.17 3.53
344 345 4.082026 GCATGCCAACTAGACTTTTTGGAT 60.082 41.667 6.36 6.48 42.17 3.41
345 346 5.404946 CATGCCAACTAGACTTTTTGGATG 58.595 41.667 15.70 12.32 42.17 3.51
346 347 4.724399 TGCCAACTAGACTTTTTGGATGA 58.276 39.130 15.70 0.49 42.17 2.92
349 350 5.183904 GCCAACTAGACTTTTTGGATGATGT 59.816 40.000 15.70 0.00 42.17 3.06
351 352 6.349611 CCAACTAGACTTTTTGGATGATGTGG 60.350 42.308 8.48 0.00 42.17 4.17
352 353 4.702131 ACTAGACTTTTTGGATGATGTGGC 59.298 41.667 0.00 0.00 0.00 5.01
354 355 3.256631 AGACTTTTTGGATGATGTGGCAC 59.743 43.478 11.55 11.55 0.00 5.01
355 356 2.964464 ACTTTTTGGATGATGTGGCACA 59.036 40.909 24.36 24.36 0.00 4.57
371 372 5.798125 TGGCACACAATTAAATGAGGAAA 57.202 34.783 0.00 0.00 0.00 3.13
372 373 5.782047 TGGCACACAATTAAATGAGGAAAG 58.218 37.500 0.00 0.00 0.00 2.62
373 374 5.538053 TGGCACACAATTAAATGAGGAAAGA 59.462 36.000 0.00 0.00 0.00 2.52
374 375 6.095377 GGCACACAATTAAATGAGGAAAGAG 58.905 40.000 0.00 0.00 0.00 2.85
376 377 7.025963 GCACACAATTAAATGAGGAAAGAGAG 58.974 38.462 0.00 0.00 0.00 3.20
377 378 7.533426 CACACAATTAAATGAGGAAAGAGAGG 58.467 38.462 0.00 0.00 0.00 3.69
378 379 6.660949 ACACAATTAAATGAGGAAAGAGAGGG 59.339 38.462 0.00 0.00 0.00 4.30
379 380 5.654209 ACAATTAAATGAGGAAAGAGAGGGC 59.346 40.000 0.00 0.00 0.00 5.19
380 381 4.927267 TTAAATGAGGAAAGAGAGGGCA 57.073 40.909 0.00 0.00 0.00 5.36
381 382 5.456921 TTAAATGAGGAAAGAGAGGGCAT 57.543 39.130 0.00 0.00 0.00 4.40
383 384 0.914644 TGAGGAAAGAGAGGGCATGG 59.085 55.000 0.00 0.00 0.00 3.66
384 385 0.915364 GAGGAAAGAGAGGGCATGGT 59.085 55.000 0.00 0.00 0.00 3.55
385 386 2.119495 GAGGAAAGAGAGGGCATGGTA 58.881 52.381 0.00 0.00 0.00 3.25
386 387 2.708325 GAGGAAAGAGAGGGCATGGTAT 59.292 50.000 0.00 0.00 0.00 2.73
387 388 2.708325 AGGAAAGAGAGGGCATGGTATC 59.292 50.000 0.00 0.00 0.00 2.24
388 389 2.439507 GGAAAGAGAGGGCATGGTATCA 59.560 50.000 0.00 0.00 0.00 2.15
389 390 3.073650 GGAAAGAGAGGGCATGGTATCAT 59.926 47.826 0.00 0.00 0.00 2.45
392 393 5.690464 AAGAGAGGGCATGGTATCATATC 57.310 43.478 0.00 0.00 31.33 1.63
394 395 5.287042 AGAGAGGGCATGGTATCATATCAT 58.713 41.667 0.00 0.00 31.33 2.45
440 441 8.779303 TGTTGTACTAGTTTGTTTCATGTATGG 58.221 33.333 0.00 0.00 0.00 2.74
443 444 6.892658 ACTAGTTTGTTTCATGTATGGCAA 57.107 33.333 0.00 0.00 0.00 4.52
444 445 7.466746 ACTAGTTTGTTTCATGTATGGCAAT 57.533 32.000 0.00 0.00 0.00 3.56
445 446 7.895759 ACTAGTTTGTTTCATGTATGGCAATT 58.104 30.769 0.00 0.00 0.00 2.32
446 447 9.019656 ACTAGTTTGTTTCATGTATGGCAATTA 57.980 29.630 0.00 0.00 0.00 1.40
447 448 9.853555 CTAGTTTGTTTCATGTATGGCAATTAA 57.146 29.630 0.00 0.00 0.00 1.40
457 458 8.629158 TCATGTATGGCAATTAATAAGACAACC 58.371 33.333 0.00 0.00 0.00 3.77
459 460 9.860650 ATGTATGGCAATTAATAAGACAACCTA 57.139 29.630 0.00 0.00 0.00 3.08
460 461 9.688091 TGTATGGCAATTAATAAGACAACCTAA 57.312 29.630 0.00 0.00 0.00 2.69
463 464 9.646522 ATGGCAATTAATAAGACAACCTAAGAT 57.353 29.630 0.00 0.00 0.00 2.40
464 465 8.902806 TGGCAATTAATAAGACAACCTAAGATG 58.097 33.333 0.00 0.00 0.00 2.90
466 467 8.624776 GCAATTAATAAGACAACCTAAGATGCT 58.375 33.333 0.00 0.00 0.00 3.79
474 475 8.723942 AAGACAACCTAAGATGCTAACTTATG 57.276 34.615 0.00 0.00 30.96 1.90
475 476 8.079211 AGACAACCTAAGATGCTAACTTATGA 57.921 34.615 0.00 0.00 30.96 2.15
476 477 8.709308 AGACAACCTAAGATGCTAACTTATGAT 58.291 33.333 0.00 0.00 30.96 2.45
477 478 9.982651 GACAACCTAAGATGCTAACTTATGATA 57.017 33.333 0.00 0.00 30.96 2.15
478 479 9.765795 ACAACCTAAGATGCTAACTTATGATAC 57.234 33.333 0.00 0.00 30.96 2.24
479 480 9.988815 CAACCTAAGATGCTAACTTATGATACT 57.011 33.333 0.00 0.00 30.96 2.12
490 491 8.808529 GCTAACTTATGATACTATGCATTACGG 58.191 37.037 3.54 0.00 0.00 4.02
492 493 8.988064 AACTTATGATACTATGCATTACGGAG 57.012 34.615 3.54 0.00 0.00 4.63
494 495 7.178628 ACTTATGATACTATGCATTACGGAGGT 59.821 37.037 3.54 0.00 0.00 3.85
495 496 8.584063 TTATGATACTATGCATTACGGAGGTA 57.416 34.615 3.54 0.00 0.00 3.08
498 499 7.170277 TGATACTATGCATTACGGAGGTAGTA 58.830 38.462 3.54 3.44 0.00 1.82
499 500 7.832685 TGATACTATGCATTACGGAGGTAGTAT 59.167 37.037 3.54 8.56 36.89 2.12
500 501 6.512342 ACTATGCATTACGGAGGTAGTATC 57.488 41.667 3.54 0.00 0.00 2.24
501 502 6.008331 ACTATGCATTACGGAGGTAGTATCA 58.992 40.000 3.54 0.00 0.00 2.15
502 503 6.663953 ACTATGCATTACGGAGGTAGTATCAT 59.336 38.462 3.54 0.00 0.00 2.45
503 504 7.832685 ACTATGCATTACGGAGGTAGTATCATA 59.167 37.037 3.54 0.00 0.00 2.15
504 505 7.661536 ATGCATTACGGAGGTAGTATCATAT 57.338 36.000 0.00 0.00 0.00 1.78
505 506 8.762481 ATGCATTACGGAGGTAGTATCATATA 57.238 34.615 0.00 0.00 0.00 0.86
506 507 8.221965 TGCATTACGGAGGTAGTATCATATAG 57.778 38.462 0.00 0.00 0.00 1.31
507 508 7.832685 TGCATTACGGAGGTAGTATCATATAGT 59.167 37.037 0.00 0.00 0.00 2.12
508 509 9.334947 GCATTACGGAGGTAGTATCATATAGTA 57.665 37.037 0.00 0.00 0.00 1.82
554 555 9.159254 AGAATATGATACTCTCCATTACAACCA 57.841 33.333 0.00 0.00 0.00 3.67
560 561 3.844211 ACTCTCCATTACAACCAGCCTTA 59.156 43.478 0.00 0.00 0.00 2.69
562 563 3.585289 TCTCCATTACAACCAGCCTTACA 59.415 43.478 0.00 0.00 0.00 2.41
563 564 3.941483 CTCCATTACAACCAGCCTTACAG 59.059 47.826 0.00 0.00 0.00 2.74
564 565 3.585289 TCCATTACAACCAGCCTTACAGA 59.415 43.478 0.00 0.00 0.00 3.41
565 566 4.042311 TCCATTACAACCAGCCTTACAGAA 59.958 41.667 0.00 0.00 0.00 3.02
567 568 4.699925 TTACAACCAGCCTTACAGAAGT 57.300 40.909 0.00 0.00 0.00 3.01
571 572 5.442391 ACAACCAGCCTTACAGAAGTAAAA 58.558 37.500 0.00 0.00 39.58 1.52
572 573 5.298527 ACAACCAGCCTTACAGAAGTAAAAC 59.701 40.000 0.00 0.00 39.58 2.43
573 574 4.395625 ACCAGCCTTACAGAAGTAAAACC 58.604 43.478 0.00 0.00 39.58 3.27
575 576 4.312443 CAGCCTTACAGAAGTAAAACCGA 58.688 43.478 0.00 0.00 39.58 4.69
576 577 4.151867 CAGCCTTACAGAAGTAAAACCGAC 59.848 45.833 0.00 0.00 39.58 4.79
577 578 4.040095 AGCCTTACAGAAGTAAAACCGACT 59.960 41.667 0.00 0.00 39.58 4.18
578 579 4.753610 GCCTTACAGAAGTAAAACCGACTT 59.246 41.667 0.00 0.00 39.58 3.01
579 580 5.237996 GCCTTACAGAAGTAAAACCGACTTT 59.762 40.000 0.00 0.00 39.58 2.66
580 581 6.238566 GCCTTACAGAAGTAAAACCGACTTTT 60.239 38.462 0.00 0.00 39.58 2.27
581 582 7.680350 GCCTTACAGAAGTAAAACCGACTTTTT 60.680 37.037 0.00 0.00 39.58 1.94
582 583 8.829612 CCTTACAGAAGTAAAACCGACTTTTTA 58.170 33.333 0.00 0.00 39.58 1.52
589 590 6.233430 GTAAAACCGACTTTTTACTCCTCC 57.767 41.667 14.65 0.00 43.85 4.30
590 591 2.738013 ACCGACTTTTTACTCCTCCG 57.262 50.000 0.00 0.00 0.00 4.63
593 594 2.991866 CCGACTTTTTACTCCTCCGAAC 59.008 50.000 0.00 0.00 0.00 3.95
595 596 2.991866 GACTTTTTACTCCTCCGAACGG 59.008 50.000 6.94 6.94 0.00 4.44
596 597 2.289257 ACTTTTTACTCCTCCGAACGGG 60.289 50.000 13.29 4.35 35.59 5.28
597 598 0.609662 TTTTACTCCTCCGAACGGGG 59.390 55.000 13.29 9.87 36.01 5.73
599 600 0.032813 TTACTCCTCCGAACGGGGAT 60.033 55.000 15.07 10.99 38.23 3.85
600 601 0.032813 TACTCCTCCGAACGGGGATT 60.033 55.000 15.07 14.42 38.23 3.01
601 602 1.144057 CTCCTCCGAACGGGGATTG 59.856 63.158 15.07 5.43 38.23 2.67
603 604 2.666098 CCTCCGAACGGGGATTGGT 61.666 63.158 15.07 0.00 38.23 3.67
604 605 1.153429 CTCCGAACGGGGATTGGTC 60.153 63.158 7.40 0.00 38.23 4.02
618 619 4.698575 GGATTGGTCCAAGACACTCTATC 58.301 47.826 10.72 0.00 44.42 2.08
619 620 4.443598 GGATTGGTCCAAGACACTCTATCC 60.444 50.000 10.72 5.00 44.42 2.59
620 621 3.184382 TGGTCCAAGACACTCTATCCA 57.816 47.619 0.00 0.00 33.68 3.41
621 622 3.516586 TGGTCCAAGACACTCTATCCAA 58.483 45.455 0.00 0.00 33.68 3.53
622 623 4.104086 TGGTCCAAGACACTCTATCCAAT 58.896 43.478 0.00 0.00 33.68 3.16
623 624 5.277250 TGGTCCAAGACACTCTATCCAATA 58.723 41.667 0.00 0.00 33.68 1.90
635 636 9.755122 ACACTCTATCCAATATACTATACTGCA 57.245 33.333 0.00 0.00 0.00 4.41
647 648 4.070009 ACTATACTGCATGTGCCATCATG 58.930 43.478 2.07 8.58 45.37 3.07
683 793 8.588290 ACCCACATAAATGAGTTAATTAGCAA 57.412 30.769 1.97 0.00 0.00 3.91
715 825 1.992557 TCAGACTACCAAAAGGCCCAT 59.007 47.619 0.00 0.00 0.00 4.00
717 827 1.992557 AGACTACCAAAAGGCCCATCA 59.007 47.619 0.00 0.00 0.00 3.07
723 833 2.158827 ACCAAAAGGCCCATCAAAACAC 60.159 45.455 0.00 0.00 0.00 3.32
732 842 7.436320 AGGCCCATCAAAACACAATATTATT 57.564 32.000 0.00 0.00 0.00 1.40
837 1058 8.462143 TTTCTCATGTCAATTCGTAGTTCTAC 57.538 34.615 0.00 0.38 0.00 2.59
838 1059 7.153217 TCTCATGTCAATTCGTAGTTCTACA 57.847 36.000 10.05 0.00 0.00 2.74
841 1062 6.811665 TCATGTCAATTCGTAGTTCTACAAGG 59.188 38.462 10.05 0.00 0.00 3.61
953 1174 1.390123 GTAGCGCACACACACATACAG 59.610 52.381 11.47 0.00 0.00 2.74
956 1177 0.110688 CGCACACACACATACAGCAC 60.111 55.000 0.00 0.00 0.00 4.40
957 1178 1.229428 GCACACACACATACAGCACT 58.771 50.000 0.00 0.00 0.00 4.40
1577 1823 1.567357 AATCCCCATTTTTGGTCCGG 58.433 50.000 0.00 0.00 0.00 5.14
2520 2801 1.519455 CGCCTCGACTGATTGGTCC 60.519 63.158 0.00 0.00 33.07 4.46
2521 2802 1.596934 GCCTCGACTGATTGGTCCA 59.403 57.895 0.00 0.00 33.07 4.02
2536 2817 1.148310 GTCCACCACACGATCAGTTG 58.852 55.000 0.00 0.00 0.00 3.16
2538 2819 0.884259 CCACCACACGATCAGTTGCA 60.884 55.000 0.00 0.00 0.00 4.08
2541 2822 1.229975 CCACACGATCAGTTGCAGCA 61.230 55.000 2.55 0.00 0.00 4.41
2622 2903 5.047188 TGCAACACCACGATACATACATAG 58.953 41.667 0.00 0.00 0.00 2.23
2679 2983 6.255453 CCATTCGATTAAATTCGTTTTGCCAT 59.745 34.615 0.00 0.00 40.03 4.40
2688 2995 9.796120 TTAAATTCGTTTTGCCATTTATAGGAG 57.204 29.630 0.00 0.00 0.00 3.69
2728 3045 1.606668 GCTTGTGATTCGGGTTGTGAA 59.393 47.619 0.00 0.00 0.00 3.18
2758 3075 2.357075 AGAGCTGTAACGATCGAGACA 58.643 47.619 24.34 21.74 0.00 3.41
2789 3106 1.305718 GGAGCCACTGTCTCCTCCT 60.306 63.158 8.00 0.00 45.13 3.69
2856 3189 1.202417 ACCGGCTTCATCTATGTCGTG 60.202 52.381 0.00 0.00 0.00 4.35
2859 3192 0.855349 GCTTCATCTATGTCGTGCGG 59.145 55.000 0.00 0.00 0.00 5.69
2903 3236 4.858692 CCATCGCAATCTTGGTTTGTTAAG 59.141 41.667 0.00 0.00 0.00 1.85
2908 3241 2.757894 TCTTGGTTTGTTAAGCCCCA 57.242 45.000 0.00 0.00 0.00 4.96
2909 3242 3.033659 TCTTGGTTTGTTAAGCCCCAA 57.966 42.857 0.00 0.00 34.23 4.12
2910 3243 3.385193 CTTGGTTTGTTAAGCCCCAAG 57.615 47.619 0.00 0.00 44.29 3.61
2911 3244 2.463047 TGGTTTGTTAAGCCCCAAGT 57.537 45.000 0.00 0.00 0.00 3.16
2912 3245 3.596940 TGGTTTGTTAAGCCCCAAGTA 57.403 42.857 0.00 0.00 0.00 2.24
2914 3247 2.823747 GGTTTGTTAAGCCCCAAGTAGG 59.176 50.000 0.00 0.00 37.03 3.18
2922 3255 2.946947 CCCCAAGTAGGCACAACAG 58.053 57.895 0.00 0.00 35.39 3.16
2923 3256 0.400213 CCCCAAGTAGGCACAACAGA 59.600 55.000 0.00 0.00 35.39 3.41
2924 3257 1.202879 CCCCAAGTAGGCACAACAGAA 60.203 52.381 0.00 0.00 35.39 3.02
2945 3278 4.436998 GTAGCGTGCGTGGCCTCT 62.437 66.667 3.32 0.00 0.00 3.69
3009 3343 6.455360 TGAACTTGATCTCACTTGCTTTTT 57.545 33.333 0.00 0.00 0.00 1.94
3010 3344 6.267817 TGAACTTGATCTCACTTGCTTTTTG 58.732 36.000 0.00 0.00 0.00 2.44
3011 3345 5.192327 ACTTGATCTCACTTGCTTTTTGG 57.808 39.130 0.00 0.00 0.00 3.28
3041 3375 1.846782 CGTGACGAAGATTAGAAGGCG 59.153 52.381 0.00 0.00 0.00 5.52
3138 3472 3.822594 TGAACGAAATCAATTCACGGG 57.177 42.857 0.00 0.00 37.96 5.28
3296 3630 4.254709 AGCAGTGCAACGCCTCCA 62.255 61.111 19.20 0.00 45.86 3.86
3317 3651 0.532862 GCTAGGCGCCACACATGTAT 60.533 55.000 31.54 6.76 0.00 2.29
3457 3792 0.689412 CCTCCTCTCCCCCTCTCAAC 60.689 65.000 0.00 0.00 0.00 3.18
3609 3944 8.288812 TGGGGAATCCTTGTTTGATTAGATTAT 58.711 33.333 0.00 0.00 32.74 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.598637 CGATTCGTCAGATTGCTTCGAA 59.401 45.455 0.00 0.00 39.97 3.71
7 8 1.009829 GCCGATTCGTCAGATTGCTT 58.990 50.000 5.20 0.00 0.00 3.91
9 10 0.579156 GAGCCGATTCGTCAGATTGC 59.421 55.000 5.20 0.00 0.00 3.56
11 12 1.202463 CCAGAGCCGATTCGTCAGATT 60.202 52.381 5.20 0.00 0.00 2.40
12 13 0.387202 CCAGAGCCGATTCGTCAGAT 59.613 55.000 5.20 0.00 0.00 2.90
14 15 0.803768 CACCAGAGCCGATTCGTCAG 60.804 60.000 5.20 0.00 0.00 3.51
15 16 1.215382 CACCAGAGCCGATTCGTCA 59.785 57.895 5.20 0.00 0.00 4.35
16 17 0.802607 GTCACCAGAGCCGATTCGTC 60.803 60.000 5.20 0.00 0.00 4.20
17 18 1.215647 GTCACCAGAGCCGATTCGT 59.784 57.895 5.20 0.00 0.00 3.85
18 19 0.803768 CTGTCACCAGAGCCGATTCG 60.804 60.000 0.00 0.00 41.50 3.34
19 20 0.247736 ACTGTCACCAGAGCCGATTC 59.752 55.000 0.00 0.00 41.50 2.52
20 21 0.036952 CACTGTCACCAGAGCCGATT 60.037 55.000 0.00 0.00 41.50 3.34
21 22 0.900182 TCACTGTCACCAGAGCCGAT 60.900 55.000 0.00 0.00 41.50 4.18
23 24 1.373497 GTCACTGTCACCAGAGCCG 60.373 63.158 0.00 0.00 41.50 5.52
25 26 1.373497 CCGTCACTGTCACCAGAGC 60.373 63.158 0.00 0.00 41.50 4.09
28 29 0.179084 AACACCGTCACTGTCACCAG 60.179 55.000 0.00 0.00 44.68 4.00
29 30 0.250793 AAACACCGTCACTGTCACCA 59.749 50.000 0.00 0.00 0.00 4.17
30 31 0.935196 GAAACACCGTCACTGTCACC 59.065 55.000 0.00 0.00 0.00 4.02
31 32 1.326548 GTGAAACACCGTCACTGTCAC 59.673 52.381 0.00 0.00 41.80 3.67
32 33 1.647346 GTGAAACACCGTCACTGTCA 58.353 50.000 0.00 0.00 41.80 3.58
34 35 3.074594 GGTGAAACACCGTCACTGT 57.925 52.632 5.17 0.00 44.95 3.55
43 44 1.068541 GCCGGAATCAAGGTGAAACAC 60.069 52.381 5.05 0.00 39.98 3.32
44 45 1.243902 GCCGGAATCAAGGTGAAACA 58.756 50.000 5.05 0.00 39.98 2.83
45 46 0.168128 CGCCGGAATCAAGGTGAAAC 59.832 55.000 5.05 0.00 40.26 2.78
47 48 0.672401 GTCGCCGGAATCAAGGTGAA 60.672 55.000 5.05 0.00 46.99 3.18
48 49 1.079405 GTCGCCGGAATCAAGGTGA 60.079 57.895 5.05 6.23 43.90 4.02
49 50 2.452813 CGTCGCCGGAATCAAGGTG 61.453 63.158 5.05 1.92 39.26 4.00
50 51 2.125673 CGTCGCCGGAATCAAGGT 60.126 61.111 5.05 0.00 0.00 3.50
51 52 2.165301 GTCGTCGCCGGAATCAAGG 61.165 63.158 5.05 0.00 33.95 3.61
52 53 2.505498 CGTCGTCGCCGGAATCAAG 61.505 63.158 5.05 0.00 33.95 3.02
53 54 2.505337 CGTCGTCGCCGGAATCAA 60.505 61.111 5.05 0.00 33.95 2.57
54 55 3.433453 TCGTCGTCGCCGGAATCA 61.433 61.111 5.05 0.00 36.96 2.57
55 56 2.948134 GTCGTCGTCGCCGGAATC 60.948 66.667 5.05 0.00 36.96 2.52
56 57 4.824166 CGTCGTCGTCGCCGGAAT 62.824 66.667 5.05 0.00 34.82 3.01
67 68 4.629523 TGTTTGGCCCCCGTCGTC 62.630 66.667 0.00 0.00 0.00 4.20
68 69 4.636435 CTGTTTGGCCCCCGTCGT 62.636 66.667 0.00 0.00 0.00 4.34
79 80 0.670162 CCCAACACTGAGCCTGTTTG 59.330 55.000 0.00 0.00 29.02 2.93
80 81 0.468029 CCCCAACACTGAGCCTGTTT 60.468 55.000 0.00 0.00 29.02 2.83
81 82 1.151450 CCCCAACACTGAGCCTGTT 59.849 57.895 0.00 0.00 31.80 3.16
82 83 2.833913 CCCCCAACACTGAGCCTGT 61.834 63.158 0.00 0.00 0.00 4.00
86 87 3.808218 TTGGCCCCCAACACTGAGC 62.808 63.158 0.00 0.00 38.75 4.26
87 88 1.604593 CTTGGCCCCCAACACTGAG 60.605 63.158 0.00 0.00 38.75 3.35
88 89 2.520458 CTTGGCCCCCAACACTGA 59.480 61.111 0.00 0.00 38.75 3.41
90 91 3.914713 CCCTTGGCCCCCAACACT 61.915 66.667 0.00 0.00 38.75 3.55
91 92 3.886550 CTCCCTTGGCCCCCAACAC 62.887 68.421 0.00 0.00 38.75 3.32
92 93 3.589542 CTCCCTTGGCCCCCAACA 61.590 66.667 0.00 0.00 38.75 3.33
93 94 4.382541 CCTCCCTTGGCCCCCAAC 62.383 72.222 0.00 0.00 38.75 3.77
101 102 0.543749 CTACCTCTTGCCTCCCTTGG 59.456 60.000 0.00 0.00 0.00 3.61
103 104 1.617947 CGCTACCTCTTGCCTCCCTT 61.618 60.000 0.00 0.00 0.00 3.95
104 105 2.060980 CGCTACCTCTTGCCTCCCT 61.061 63.158 0.00 0.00 0.00 4.20
106 107 2.501610 CCGCTACCTCTTGCCTCC 59.498 66.667 0.00 0.00 0.00 4.30
107 108 2.202946 GCCGCTACCTCTTGCCTC 60.203 66.667 0.00 0.00 0.00 4.70
108 109 3.003173 TGCCGCTACCTCTTGCCT 61.003 61.111 0.00 0.00 0.00 4.75
110 111 2.512515 CCTGCCGCTACCTCTTGC 60.513 66.667 0.00 0.00 0.00 4.01
111 112 2.187946 CCCTGCCGCTACCTCTTG 59.812 66.667 0.00 0.00 0.00 3.02
112 113 3.787001 GCCCTGCCGCTACCTCTT 61.787 66.667 0.00 0.00 0.00 2.85
124 125 4.463879 CACCTCTCGCTGGCCCTG 62.464 72.222 0.00 0.00 0.00 4.45
144 145 2.433838 CCTCACTGCTCGCCACTG 60.434 66.667 0.00 0.00 0.00 3.66
151 152 1.153862 CTCACTCGCCTCACTGCTC 60.154 63.158 0.00 0.00 0.00 4.26
152 153 1.594194 CTCTCACTCGCCTCACTGCT 61.594 60.000 0.00 0.00 0.00 4.24
154 155 1.510383 CCTCTCACTCGCCTCACTG 59.490 63.158 0.00 0.00 0.00 3.66
155 156 2.347322 GCCTCTCACTCGCCTCACT 61.347 63.158 0.00 0.00 0.00 3.41
156 157 2.183046 GCCTCTCACTCGCCTCAC 59.817 66.667 0.00 0.00 0.00 3.51
160 161 1.882989 AACAGAGCCTCTCACTCGCC 61.883 60.000 0.00 0.00 39.23 5.54
161 162 0.037790 AAACAGAGCCTCTCACTCGC 60.038 55.000 0.00 0.00 39.23 5.03
162 163 2.447244 AAAACAGAGCCTCTCACTCG 57.553 50.000 0.00 0.00 39.23 4.18
179 180 3.585862 CTGCTACTGCTCGGAGTAAAAA 58.414 45.455 6.90 0.00 40.48 1.94
181 182 1.135083 GCTGCTACTGCTCGGAGTAAA 60.135 52.381 6.90 0.00 40.48 2.01
182 183 0.456221 GCTGCTACTGCTCGGAGTAA 59.544 55.000 6.90 0.00 40.48 2.24
183 184 1.384989 GGCTGCTACTGCTCGGAGTA 61.385 60.000 6.90 0.59 40.48 2.59
184 185 2.716017 GGCTGCTACTGCTCGGAGT 61.716 63.158 6.90 0.00 40.48 3.85
185 186 2.105930 GGCTGCTACTGCTCGGAG 59.894 66.667 0.00 0.00 40.48 4.63
187 188 3.764810 CTCGGCTGCTACTGCTCGG 62.765 68.421 0.00 0.00 40.48 4.63
189 190 0.456221 TTACTCGGCTGCTACTGCTC 59.544 55.000 0.00 0.00 40.48 4.26
191 192 1.941325 ATTTACTCGGCTGCTACTGC 58.059 50.000 0.00 0.00 40.20 4.40
193 194 4.463186 CCCTATATTTACTCGGCTGCTACT 59.537 45.833 0.00 0.00 0.00 2.57
194 195 4.461781 TCCCTATATTTACTCGGCTGCTAC 59.538 45.833 0.00 0.00 0.00 3.58
196 197 3.258622 GTCCCTATATTTACTCGGCTGCT 59.741 47.826 0.00 0.00 0.00 4.24
198 199 4.322049 CCTGTCCCTATATTTACTCGGCTG 60.322 50.000 0.00 0.00 0.00 4.85
199 200 3.833070 CCTGTCCCTATATTTACTCGGCT 59.167 47.826 0.00 0.00 0.00 5.52
201 202 6.321690 CCTATCCTGTCCCTATATTTACTCGG 59.678 46.154 0.00 0.00 0.00 4.63
202 203 6.183360 GCCTATCCTGTCCCTATATTTACTCG 60.183 46.154 0.00 0.00 0.00 4.18
204 205 5.657302 CGCCTATCCTGTCCCTATATTTACT 59.343 44.000 0.00 0.00 0.00 2.24
205 206 5.655532 TCGCCTATCCTGTCCCTATATTTAC 59.344 44.000 0.00 0.00 0.00 2.01
207 208 4.684724 TCGCCTATCCTGTCCCTATATTT 58.315 43.478 0.00 0.00 0.00 1.40
208 209 4.332683 TCGCCTATCCTGTCCCTATATT 57.667 45.455 0.00 0.00 0.00 1.28
209 210 4.219115 CATCGCCTATCCTGTCCCTATAT 58.781 47.826 0.00 0.00 0.00 0.86
210 211 3.627492 CCATCGCCTATCCTGTCCCTATA 60.627 52.174 0.00 0.00 0.00 1.31
211 212 2.461695 CATCGCCTATCCTGTCCCTAT 58.538 52.381 0.00 0.00 0.00 2.57
213 214 0.833834 CCATCGCCTATCCTGTCCCT 60.834 60.000 0.00 0.00 0.00 4.20
214 215 0.832135 TCCATCGCCTATCCTGTCCC 60.832 60.000 0.00 0.00 0.00 4.46
215 216 0.605589 CTCCATCGCCTATCCTGTCC 59.394 60.000 0.00 0.00 0.00 4.02
217 218 0.188587 TCCTCCATCGCCTATCCTGT 59.811 55.000 0.00 0.00 0.00 4.00
218 219 1.566211 ATCCTCCATCGCCTATCCTG 58.434 55.000 0.00 0.00 0.00 3.86
221 222 7.824779 AGTAAAAATTATCCTCCATCGCCTATC 59.175 37.037 0.00 0.00 0.00 2.08
222 223 7.690256 AGTAAAAATTATCCTCCATCGCCTAT 58.310 34.615 0.00 0.00 0.00 2.57
224 225 5.941788 AGTAAAAATTATCCTCCATCGCCT 58.058 37.500 0.00 0.00 0.00 5.52
225 226 5.181433 GGAGTAAAAATTATCCTCCATCGCC 59.819 44.000 0.00 0.00 41.12 5.54
226 227 5.763204 TGGAGTAAAAATTATCCTCCATCGC 59.237 40.000 10.41 0.00 45.05 4.58
231 232 7.226128 CGGTTAGTGGAGTAAAAATTATCCTCC 59.774 40.741 0.00 0.00 41.69 4.30
233 234 7.627311 ACGGTTAGTGGAGTAAAAATTATCCT 58.373 34.615 0.00 0.00 32.79 3.24
238 239 8.570488 CCTAAAACGGTTAGTGGAGTAAAAATT 58.430 33.333 0.00 0.00 0.00 1.82
239 240 7.175467 CCCTAAAACGGTTAGTGGAGTAAAAAT 59.825 37.037 0.00 0.00 0.00 1.82
240 241 6.486320 CCCTAAAACGGTTAGTGGAGTAAAAA 59.514 38.462 0.00 0.00 0.00 1.94
241 242 5.997129 CCCTAAAACGGTTAGTGGAGTAAAA 59.003 40.000 0.00 0.00 0.00 1.52
245 246 3.242011 TCCCTAAAACGGTTAGTGGAGT 58.758 45.455 0.00 0.00 0.00 3.85
246 247 3.967332 TCCCTAAAACGGTTAGTGGAG 57.033 47.619 0.00 0.00 0.00 3.86
247 248 3.119029 CGATCCCTAAAACGGTTAGTGGA 60.119 47.826 14.72 14.72 0.00 4.02
248 249 3.119029 TCGATCCCTAAAACGGTTAGTGG 60.119 47.826 0.00 0.00 0.00 4.00
249 250 3.861689 GTCGATCCCTAAAACGGTTAGTG 59.138 47.826 0.00 0.00 0.00 2.74
250 251 3.766051 AGTCGATCCCTAAAACGGTTAGT 59.234 43.478 0.00 0.00 0.00 2.24
251 252 4.382345 AGTCGATCCCTAAAACGGTTAG 57.618 45.455 0.00 0.00 0.00 2.34
253 254 4.019174 TCTAGTCGATCCCTAAAACGGTT 58.981 43.478 0.00 0.00 0.00 4.44
254 255 3.624777 TCTAGTCGATCCCTAAAACGGT 58.375 45.455 0.00 0.00 0.00 4.83
255 256 4.547532 CATCTAGTCGATCCCTAAAACGG 58.452 47.826 0.00 0.00 0.00 4.44
256 257 3.982058 GCATCTAGTCGATCCCTAAAACG 59.018 47.826 0.00 0.00 0.00 3.60
257 258 4.985409 CAGCATCTAGTCGATCCCTAAAAC 59.015 45.833 0.00 0.00 0.00 2.43
261 262 2.108425 ACCAGCATCTAGTCGATCCCTA 59.892 50.000 0.00 0.00 0.00 3.53
262 263 1.133325 ACCAGCATCTAGTCGATCCCT 60.133 52.381 0.00 0.00 0.00 4.20
263 264 1.333177 ACCAGCATCTAGTCGATCCC 58.667 55.000 0.00 0.00 0.00 3.85
264 265 3.057174 CCTAACCAGCATCTAGTCGATCC 60.057 52.174 0.00 0.00 0.00 3.36
265 266 3.612955 GCCTAACCAGCATCTAGTCGATC 60.613 52.174 0.00 0.00 0.00 3.69
266 267 2.297597 GCCTAACCAGCATCTAGTCGAT 59.702 50.000 0.00 0.00 0.00 3.59
267 268 1.681793 GCCTAACCAGCATCTAGTCGA 59.318 52.381 0.00 0.00 0.00 4.20
268 269 1.683917 AGCCTAACCAGCATCTAGTCG 59.316 52.381 0.00 0.00 0.00 4.18
269 270 2.224161 CCAGCCTAACCAGCATCTAGTC 60.224 54.545 0.00 0.00 0.00 2.59
270 271 1.765314 CCAGCCTAACCAGCATCTAGT 59.235 52.381 0.00 0.00 0.00 2.57
271 272 1.765314 ACCAGCCTAACCAGCATCTAG 59.235 52.381 0.00 0.00 0.00 2.43
273 274 0.543749 GACCAGCCTAACCAGCATCT 59.456 55.000 0.00 0.00 0.00 2.90
274 275 0.811616 CGACCAGCCTAACCAGCATC 60.812 60.000 0.00 0.00 0.00 3.91
275 276 1.221840 CGACCAGCCTAACCAGCAT 59.778 57.895 0.00 0.00 0.00 3.79
277 278 0.248289 TTACGACCAGCCTAACCAGC 59.752 55.000 0.00 0.00 0.00 4.85
278 279 2.550978 CATTACGACCAGCCTAACCAG 58.449 52.381 0.00 0.00 0.00 4.00
280 281 1.474498 CCCATTACGACCAGCCTAACC 60.474 57.143 0.00 0.00 0.00 2.85
281 282 1.483415 TCCCATTACGACCAGCCTAAC 59.517 52.381 0.00 0.00 0.00 2.34
282 283 1.760613 CTCCCATTACGACCAGCCTAA 59.239 52.381 0.00 0.00 0.00 2.69
283 284 1.342674 ACTCCCATTACGACCAGCCTA 60.343 52.381 0.00 0.00 0.00 3.93
287 288 4.873746 ATGATACTCCCATTACGACCAG 57.126 45.455 0.00 0.00 0.00 4.00
290 291 8.008513 ACCATATATGATACTCCCATTACGAC 57.991 38.462 14.54 0.00 0.00 4.34
291 292 9.877222 ATACCATATATGATACTCCCATTACGA 57.123 33.333 14.54 0.00 0.00 3.43
296 297 8.600668 GCATGATACCATATATGATACTCCCAT 58.399 37.037 14.54 5.47 0.00 4.00
297 298 7.568366 TGCATGATACCATATATGATACTCCCA 59.432 37.037 14.54 3.54 0.00 4.37
298 299 7.966812 TGCATGATACCATATATGATACTCCC 58.033 38.462 14.54 0.00 0.00 4.30
299 300 9.433153 CATGCATGATACCATATATGATACTCC 57.567 37.037 22.59 0.00 31.95 3.85
300 301 8.933807 GCATGCATGATACCATATATGATACTC 58.066 37.037 30.64 1.38 31.95 2.59
302 303 7.662669 TGGCATGCATGATACCATATATGATAC 59.337 37.037 30.64 5.71 31.95 2.24
304 305 6.607019 TGGCATGCATGATACCATATATGAT 58.393 36.000 30.64 0.00 31.95 2.45
307 308 6.429151 AGTTGGCATGCATGATACCATATAT 58.571 36.000 30.64 10.75 0.00 0.86
308 309 5.818887 AGTTGGCATGCATGATACCATATA 58.181 37.500 30.64 10.28 0.00 0.86
311 312 2.953453 AGTTGGCATGCATGATACCAT 58.047 42.857 30.64 10.97 0.00 3.55
313 314 3.499918 GTCTAGTTGGCATGCATGATACC 59.500 47.826 30.64 21.08 0.00 2.73
316 317 3.572632 AGTCTAGTTGGCATGCATGAT 57.427 42.857 30.64 11.73 0.00 2.45
317 318 3.354948 AAGTCTAGTTGGCATGCATGA 57.645 42.857 30.64 7.50 0.00 3.07
318 319 4.445452 AAAAGTCTAGTTGGCATGCATG 57.555 40.909 22.70 22.70 0.00 4.06
319 320 4.322198 CCAAAAAGTCTAGTTGGCATGCAT 60.322 41.667 21.36 4.57 35.72 3.96
320 321 3.005684 CCAAAAAGTCTAGTTGGCATGCA 59.994 43.478 21.36 2.54 35.72 3.96
321 322 3.255642 TCCAAAAAGTCTAGTTGGCATGC 59.744 43.478 9.90 9.90 41.38 4.06
322 323 5.183713 TCATCCAAAAAGTCTAGTTGGCATG 59.816 40.000 8.88 11.77 41.38 4.06
323 324 5.324409 TCATCCAAAAAGTCTAGTTGGCAT 58.676 37.500 8.88 3.18 41.38 4.40
324 325 4.724399 TCATCCAAAAAGTCTAGTTGGCA 58.276 39.130 8.88 0.00 41.38 4.92
325 326 5.183904 ACATCATCCAAAAAGTCTAGTTGGC 59.816 40.000 8.88 0.00 41.38 4.52
326 327 6.349611 CCACATCATCCAAAAAGTCTAGTTGG 60.350 42.308 7.79 7.79 42.70 3.77
328 329 5.183904 GCCACATCATCCAAAAAGTCTAGTT 59.816 40.000 0.00 0.00 0.00 2.24
329 330 4.702131 GCCACATCATCCAAAAAGTCTAGT 59.298 41.667 0.00 0.00 0.00 2.57
330 331 4.701651 TGCCACATCATCCAAAAAGTCTAG 59.298 41.667 0.00 0.00 0.00 2.43
331 332 4.458989 GTGCCACATCATCCAAAAAGTCTA 59.541 41.667 0.00 0.00 0.00 2.59
332 333 3.256631 GTGCCACATCATCCAAAAAGTCT 59.743 43.478 0.00 0.00 0.00 3.24
334 335 2.964464 TGTGCCACATCATCCAAAAAGT 59.036 40.909 0.00 0.00 0.00 2.66
335 336 3.243805 TGTGTGCCACATCATCCAAAAAG 60.244 43.478 0.00 0.00 39.62 2.27
336 337 2.697229 TGTGTGCCACATCATCCAAAAA 59.303 40.909 0.00 0.00 39.62 1.94
339 340 1.992538 TTGTGTGCCACATCATCCAA 58.007 45.000 0.00 0.00 44.16 3.53
340 341 2.219080 ATTGTGTGCCACATCATCCA 57.781 45.000 0.00 0.00 44.16 3.41
341 342 4.717233 TTAATTGTGTGCCACATCATCC 57.283 40.909 0.00 0.00 44.16 3.51
342 343 6.331845 TCATTTAATTGTGTGCCACATCATC 58.668 36.000 0.00 0.00 44.16 2.92
343 344 6.283544 TCATTTAATTGTGTGCCACATCAT 57.716 33.333 0.00 0.00 44.16 2.45
344 345 5.336610 CCTCATTTAATTGTGTGCCACATCA 60.337 40.000 0.00 0.00 44.16 3.07
345 346 5.104374 CCTCATTTAATTGTGTGCCACATC 58.896 41.667 0.00 0.00 44.16 3.06
346 347 4.771577 TCCTCATTTAATTGTGTGCCACAT 59.228 37.500 0.00 0.00 44.16 3.21
349 350 5.538053 TCTTTCCTCATTTAATTGTGTGCCA 59.462 36.000 0.00 0.00 0.00 4.92
351 352 6.913170 TCTCTTTCCTCATTTAATTGTGTGC 58.087 36.000 0.00 0.00 0.00 4.57
352 353 7.362401 CCCTCTCTTTCCTCATTTAATTGTGTG 60.362 40.741 0.00 0.00 0.00 3.82
354 355 6.405176 GCCCTCTCTTTCCTCATTTAATTGTG 60.405 42.308 0.00 0.00 0.00 3.33
355 356 5.654209 GCCCTCTCTTTCCTCATTTAATTGT 59.346 40.000 0.00 0.00 0.00 2.71
356 357 5.653769 TGCCCTCTCTTTCCTCATTTAATTG 59.346 40.000 0.00 0.00 0.00 2.32
358 359 5.456921 TGCCCTCTCTTTCCTCATTTAAT 57.543 39.130 0.00 0.00 0.00 1.40
359 360 4.927267 TGCCCTCTCTTTCCTCATTTAA 57.073 40.909 0.00 0.00 0.00 1.52
362 363 2.091994 CCATGCCCTCTCTTTCCTCATT 60.092 50.000 0.00 0.00 0.00 2.57
363 364 1.493871 CCATGCCCTCTCTTTCCTCAT 59.506 52.381 0.00 0.00 0.00 2.90
364 365 0.914644 CCATGCCCTCTCTTTCCTCA 59.085 55.000 0.00 0.00 0.00 3.86
365 366 0.915364 ACCATGCCCTCTCTTTCCTC 59.085 55.000 0.00 0.00 0.00 3.71
366 367 2.270434 TACCATGCCCTCTCTTTCCT 57.730 50.000 0.00 0.00 0.00 3.36
367 368 2.439507 TGATACCATGCCCTCTCTTTCC 59.560 50.000 0.00 0.00 0.00 3.13
368 369 3.845781 TGATACCATGCCCTCTCTTTC 57.154 47.619 0.00 0.00 0.00 2.62
369 370 5.549228 TGATATGATACCATGCCCTCTCTTT 59.451 40.000 0.00 0.00 34.31 2.52
370 371 5.096521 TGATATGATACCATGCCCTCTCTT 58.903 41.667 0.00 0.00 34.31 2.85
371 372 4.692328 TGATATGATACCATGCCCTCTCT 58.308 43.478 0.00 0.00 34.31 3.10
372 373 5.129980 TCATGATATGATACCATGCCCTCTC 59.870 44.000 1.75 0.00 37.99 3.20
373 374 5.034878 TCATGATATGATACCATGCCCTCT 58.965 41.667 1.75 0.00 37.99 3.69
374 375 5.363562 TCATGATATGATACCATGCCCTC 57.636 43.478 1.75 0.00 37.99 4.30
414 415 8.779303 CCATACATGAAACAAACTAGTACAACA 58.221 33.333 0.00 0.00 0.00 3.33
415 416 7.749126 GCCATACATGAAACAAACTAGTACAAC 59.251 37.037 0.00 0.00 0.00 3.32
416 417 7.445707 TGCCATACATGAAACAAACTAGTACAA 59.554 33.333 0.00 0.00 0.00 2.41
417 418 6.937465 TGCCATACATGAAACAAACTAGTACA 59.063 34.615 0.00 0.00 0.00 2.90
418 419 7.372451 TGCCATACATGAAACAAACTAGTAC 57.628 36.000 0.00 0.00 0.00 2.73
419 420 7.987750 TTGCCATACATGAAACAAACTAGTA 57.012 32.000 0.00 0.00 0.00 1.82
420 421 6.892658 TTGCCATACATGAAACAAACTAGT 57.107 33.333 0.00 0.00 0.00 2.57
421 422 9.853555 TTAATTGCCATACATGAAACAAACTAG 57.146 29.630 0.00 0.00 0.00 2.57
431 432 8.629158 GGTTGTCTTATTAATTGCCATACATGA 58.371 33.333 0.00 0.00 0.00 3.07
434 435 9.688091 TTAGGTTGTCTTATTAATTGCCATACA 57.312 29.630 0.00 0.00 0.00 2.29
438 439 8.902806 CATCTTAGGTTGTCTTATTAATTGCCA 58.097 33.333 0.00 0.00 0.00 4.92
439 440 7.862873 GCATCTTAGGTTGTCTTATTAATTGCC 59.137 37.037 0.00 0.00 0.00 4.52
440 441 8.624776 AGCATCTTAGGTTGTCTTATTAATTGC 58.375 33.333 0.00 0.00 0.00 3.56
448 449 9.817809 CATAAGTTAGCATCTTAGGTTGTCTTA 57.182 33.333 0.00 0.00 32.13 2.10
449 450 8.540388 TCATAAGTTAGCATCTTAGGTTGTCTT 58.460 33.333 0.00 0.00 33.03 3.01
451 452 8.894768 ATCATAAGTTAGCATCTTAGGTTGTC 57.105 34.615 0.00 0.00 33.03 3.18
452 453 9.765795 GTATCATAAGTTAGCATCTTAGGTTGT 57.234 33.333 0.00 0.00 33.03 3.32
453 454 9.988815 AGTATCATAAGTTAGCATCTTAGGTTG 57.011 33.333 0.00 0.00 33.03 3.77
463 464 9.353999 CGTAATGCATAGTATCATAAGTTAGCA 57.646 33.333 0.00 0.00 0.00 3.49
464 465 8.808529 CCGTAATGCATAGTATCATAAGTTAGC 58.191 37.037 0.00 0.00 0.00 3.09
468 469 7.178628 ACCTCCGTAATGCATAGTATCATAAGT 59.821 37.037 0.00 0.00 0.00 2.24
469 470 7.548097 ACCTCCGTAATGCATAGTATCATAAG 58.452 38.462 0.00 0.00 0.00 1.73
470 471 7.476540 ACCTCCGTAATGCATAGTATCATAA 57.523 36.000 0.00 0.00 0.00 1.90
471 472 7.832685 ACTACCTCCGTAATGCATAGTATCATA 59.167 37.037 0.00 0.00 0.00 2.15
474 475 6.512342 ACTACCTCCGTAATGCATAGTATC 57.488 41.667 0.00 0.00 0.00 2.24
475 476 7.832685 TGATACTACCTCCGTAATGCATAGTAT 59.167 37.037 11.08 11.08 37.18 2.12
476 477 7.170277 TGATACTACCTCCGTAATGCATAGTA 58.830 38.462 0.00 0.81 0.00 1.82
477 478 6.008331 TGATACTACCTCCGTAATGCATAGT 58.992 40.000 0.00 0.00 0.00 2.12
478 479 6.510879 TGATACTACCTCCGTAATGCATAG 57.489 41.667 0.00 0.00 0.00 2.23
479 480 8.762481 ATATGATACTACCTCCGTAATGCATA 57.238 34.615 0.00 0.00 0.00 3.14
480 481 7.661536 ATATGATACTACCTCCGTAATGCAT 57.338 36.000 0.00 0.00 0.00 3.96
481 482 7.832685 ACTATATGATACTACCTCCGTAATGCA 59.167 37.037 0.00 0.00 0.00 3.96
482 483 8.223177 ACTATATGATACTACCTCCGTAATGC 57.777 38.462 0.00 0.00 0.00 3.56
528 529 9.159254 TGGTTGTAATGGAGAGTATCATATTCT 57.841 33.333 0.00 0.00 37.82 2.40
529 530 9.429359 CTGGTTGTAATGGAGAGTATCATATTC 57.571 37.037 0.00 0.00 37.82 1.75
530 531 7.880195 GCTGGTTGTAATGGAGAGTATCATATT 59.120 37.037 0.00 0.00 37.82 1.28
531 532 7.390027 GCTGGTTGTAATGGAGAGTATCATAT 58.610 38.462 0.00 0.00 37.82 1.78
532 533 6.239600 GGCTGGTTGTAATGGAGAGTATCATA 60.240 42.308 0.00 0.00 37.82 2.15
533 534 5.455326 GGCTGGTTGTAATGGAGAGTATCAT 60.455 44.000 0.00 0.00 37.82 2.45
534 535 4.141711 GGCTGGTTGTAATGGAGAGTATCA 60.142 45.833 0.00 0.00 37.82 2.15
535 536 4.101741 AGGCTGGTTGTAATGGAGAGTATC 59.898 45.833 0.00 0.00 0.00 2.24
536 537 4.040755 AGGCTGGTTGTAATGGAGAGTAT 58.959 43.478 0.00 0.00 0.00 2.12
539 540 3.356529 AAGGCTGGTTGTAATGGAGAG 57.643 47.619 0.00 0.00 0.00 3.20
540 541 3.585289 TGTAAGGCTGGTTGTAATGGAGA 59.415 43.478 0.00 0.00 0.00 3.71
542 543 3.585289 TCTGTAAGGCTGGTTGTAATGGA 59.415 43.478 0.00 0.00 0.00 3.41
543 544 3.950397 TCTGTAAGGCTGGTTGTAATGG 58.050 45.455 0.00 0.00 0.00 3.16
544 545 5.003804 ACTTCTGTAAGGCTGGTTGTAATG 58.996 41.667 0.00 0.00 37.01 1.90
545 546 5.242795 ACTTCTGTAAGGCTGGTTGTAAT 57.757 39.130 0.00 0.00 37.01 1.89
546 547 4.699925 ACTTCTGTAAGGCTGGTTGTAA 57.300 40.909 0.00 0.00 37.01 2.41
547 548 5.811796 TTACTTCTGTAAGGCTGGTTGTA 57.188 39.130 0.00 0.00 37.01 2.41
549 550 5.278315 GGTTTTACTTCTGTAAGGCTGGTTG 60.278 44.000 0.00 0.00 39.49 3.77
550 551 4.825634 GGTTTTACTTCTGTAAGGCTGGTT 59.174 41.667 0.00 0.00 39.49 3.67
553 554 4.151867 GTCGGTTTTACTTCTGTAAGGCTG 59.848 45.833 0.00 0.00 39.49 4.85
554 555 4.040095 AGTCGGTTTTACTTCTGTAAGGCT 59.960 41.667 0.00 0.00 39.49 4.58
567 568 4.990426 CGGAGGAGTAAAAAGTCGGTTTTA 59.010 41.667 0.00 0.00 37.37 1.52
571 572 2.242043 TCGGAGGAGTAAAAAGTCGGT 58.758 47.619 0.00 0.00 0.00 4.69
572 573 2.991866 GTTCGGAGGAGTAAAAAGTCGG 59.008 50.000 0.00 0.00 0.00 4.79
573 574 2.660236 CGTTCGGAGGAGTAAAAAGTCG 59.340 50.000 0.00 0.00 0.00 4.18
575 576 2.289257 CCCGTTCGGAGGAGTAAAAAGT 60.289 50.000 13.08 0.00 0.00 2.66
576 577 2.344025 CCCGTTCGGAGGAGTAAAAAG 58.656 52.381 13.08 0.00 0.00 2.27
577 578 1.002315 CCCCGTTCGGAGGAGTAAAAA 59.998 52.381 13.08 0.00 0.00 1.94
578 579 0.609662 CCCCGTTCGGAGGAGTAAAA 59.390 55.000 13.08 0.00 0.00 1.52
579 580 0.251742 TCCCCGTTCGGAGGAGTAAA 60.252 55.000 13.08 0.00 0.00 2.01
580 581 0.032813 ATCCCCGTTCGGAGGAGTAA 60.033 55.000 19.83 4.79 34.69 2.24
581 582 0.032813 AATCCCCGTTCGGAGGAGTA 60.033 55.000 19.83 5.05 34.69 2.59
582 583 1.305887 AATCCCCGTTCGGAGGAGT 60.306 57.895 19.83 16.56 34.69 3.85
584 585 2.363975 CCAATCCCCGTTCGGAGGA 61.364 63.158 18.33 18.33 34.69 3.71
587 588 2.662070 GGACCAATCCCCGTTCGGA 61.662 63.158 13.08 0.00 39.39 4.55
589 590 1.003112 TTGGACCAATCCCCGTTCG 60.003 57.895 1.69 0.00 45.59 3.95
590 591 0.326927 TCTTGGACCAATCCCCGTTC 59.673 55.000 7.54 0.00 45.59 3.95
593 594 0.676782 GTGTCTTGGACCAATCCCCG 60.677 60.000 7.54 0.00 45.59 5.73
595 596 1.630878 AGAGTGTCTTGGACCAATCCC 59.369 52.381 7.54 0.00 45.59 3.85
596 597 4.443598 GGATAGAGTGTCTTGGACCAATCC 60.444 50.000 7.54 4.69 46.48 3.01
597 598 4.162320 TGGATAGAGTGTCTTGGACCAATC 59.838 45.833 7.54 1.80 0.00 2.67
599 600 3.516586 TGGATAGAGTGTCTTGGACCAA 58.483 45.455 6.76 6.76 0.00 3.67
600 601 3.184382 TGGATAGAGTGTCTTGGACCA 57.816 47.619 0.00 0.00 0.00 4.02
601 602 4.762289 ATTGGATAGAGTGTCTTGGACC 57.238 45.455 0.00 0.00 0.00 4.46
614 615 9.254133 GCACATGCAGTATAGTATATTGGATAG 57.746 37.037 16.00 13.28 41.59 2.08
615 616 8.204160 GGCACATGCAGTATAGTATATTGGATA 58.796 37.037 16.00 0.00 44.36 2.59
618 619 6.172630 TGGCACATGCAGTATAGTATATTGG 58.827 40.000 12.95 1.79 44.36 3.16
647 648 6.402222 TCATTTATGTGGGTATTTTGTTGCC 58.598 36.000 0.00 0.00 0.00 4.52
679 680 8.486210 TGGTAGTCTGATTCTGTATTATTTGCT 58.514 33.333 0.00 0.00 0.00 3.91
688 798 5.488341 GCCTTTTGGTAGTCTGATTCTGTA 58.512 41.667 0.00 0.00 42.99 2.74
692 802 3.017442 GGGCCTTTTGGTAGTCTGATTC 58.983 50.000 0.84 0.00 42.99 2.52
698 808 2.507407 TGATGGGCCTTTTGGTAGTC 57.493 50.000 4.53 0.00 42.99 2.59
702 812 2.122768 TGTTTTGATGGGCCTTTTGGT 58.877 42.857 4.53 0.00 42.99 3.67
703 813 2.158842 TGTGTTTTGATGGGCCTTTTGG 60.159 45.455 4.53 0.00 44.18 3.28
809 1011 9.823647 AGAACTACGAATTGACATGAGAAATAT 57.176 29.630 0.00 0.00 0.00 1.28
811 1013 9.088512 GTAGAACTACGAATTGACATGAGAAAT 57.911 33.333 0.00 0.00 0.00 2.17
812 1014 8.085909 TGTAGAACTACGAATTGACATGAGAAA 58.914 33.333 0.00 0.00 38.85 2.52
821 1023 8.717821 CATTTTCCTTGTAGAACTACGAATTGA 58.282 33.333 7.36 1.37 38.85 2.57
836 1057 7.364144 GGAATCAGATTTAGCCATTTTCCTTGT 60.364 37.037 0.00 0.00 0.00 3.16
837 1058 6.982724 GGAATCAGATTTAGCCATTTTCCTTG 59.017 38.462 0.00 0.00 0.00 3.61
838 1059 6.899631 AGGAATCAGATTTAGCCATTTTCCTT 59.100 34.615 0.00 0.00 37.71 3.36
841 1062 6.322201 TGGAGGAATCAGATTTAGCCATTTTC 59.678 38.462 0.00 0.00 0.00 2.29
980 1215 1.449246 CCTGGGAAAGAGAGCTGCG 60.449 63.158 0.00 0.00 0.00 5.18
1099 1334 4.534141 ACCCGCGTCACCGTTGTT 62.534 61.111 4.92 0.00 36.15 2.83
1634 1883 0.040958 CCGAGCAATTAAGCGCCATC 60.041 55.000 2.29 0.00 40.15 3.51
1892 2157 2.224821 GGAGATGTCCATGGCCAGA 58.775 57.895 13.05 0.00 43.31 3.86
2520 2801 0.514255 CTGCAACTGATCGTGTGGTG 59.486 55.000 0.00 0.00 0.00 4.17
2521 2802 1.230635 GCTGCAACTGATCGTGTGGT 61.231 55.000 0.00 0.00 0.00 4.16
2526 2807 0.952497 CACCTGCTGCAACTGATCGT 60.952 55.000 3.02 0.00 0.00 3.73
2538 2819 4.892965 TTGGCAACGGCACCTGCT 62.893 61.111 0.00 0.00 43.71 4.24
2679 2983 7.050970 ACTTCGCATCATGTACTCCTATAAA 57.949 36.000 0.00 0.00 0.00 1.40
2688 2995 3.120199 AGCAACAACTTCGCATCATGTAC 60.120 43.478 0.00 0.00 0.00 2.90
2728 3045 4.883083 TCGTTACAGCTCTTCTTTCACAT 58.117 39.130 0.00 0.00 0.00 3.21
2758 3075 2.670148 GGCTCCCCACCAACTCGAT 61.670 63.158 0.00 0.00 0.00 3.59
2859 3192 1.886861 CTGACTGGTACGCAACGCAC 61.887 60.000 0.00 0.00 0.00 5.34
2870 3203 2.202236 ATTGCGATGGCCTGACTGGT 62.202 55.000 3.32 0.00 38.85 4.00
2873 3206 0.254178 AAGATTGCGATGGCCTGACT 59.746 50.000 3.32 0.00 38.85 3.41
2908 3241 1.512926 CGCTTCTGTTGTGCCTACTT 58.487 50.000 0.00 0.00 0.00 2.24
2909 3242 0.320771 CCGCTTCTGTTGTGCCTACT 60.321 55.000 0.00 0.00 0.00 2.57
2910 3243 0.602905 ACCGCTTCTGTTGTGCCTAC 60.603 55.000 0.00 0.00 0.00 3.18
2911 3244 0.970640 TACCGCTTCTGTTGTGCCTA 59.029 50.000 0.00 0.00 0.00 3.93
2912 3245 0.320771 CTACCGCTTCTGTTGTGCCT 60.321 55.000 0.00 0.00 0.00 4.75
2914 3247 1.497722 GCTACCGCTTCTGTTGTGC 59.502 57.895 0.00 0.00 0.00 4.57
2915 3248 0.944311 ACGCTACCGCTTCTGTTGTG 60.944 55.000 0.00 0.00 38.22 3.33
2916 3249 0.944311 CACGCTACCGCTTCTGTTGT 60.944 55.000 0.00 0.00 38.22 3.32
2917 3250 1.781555 CACGCTACCGCTTCTGTTG 59.218 57.895 0.00 0.00 38.22 3.33
2918 3251 2.027625 GCACGCTACCGCTTCTGTT 61.028 57.895 0.00 0.00 38.22 3.16
2919 3252 2.432628 GCACGCTACCGCTTCTGT 60.433 61.111 0.00 0.00 38.22 3.41
2920 3253 3.545481 CGCACGCTACCGCTTCTG 61.545 66.667 0.00 0.00 38.22 3.02
2921 3254 4.052229 ACGCACGCTACCGCTTCT 62.052 61.111 0.00 0.00 38.22 2.85
2922 3255 3.838795 CACGCACGCTACCGCTTC 61.839 66.667 0.00 0.00 38.22 3.86
2942 3275 1.641577 CTTTTAACCCCGCGAGAGAG 58.358 55.000 8.23 0.00 0.00 3.20
2943 3276 0.248289 CCTTTTAACCCCGCGAGAGA 59.752 55.000 8.23 0.00 0.00 3.10
2944 3277 0.036671 ACCTTTTAACCCCGCGAGAG 60.037 55.000 8.23 0.00 0.00 3.20
2945 3278 0.320946 CACCTTTTAACCCCGCGAGA 60.321 55.000 8.23 0.00 0.00 4.04
3028 3362 1.337823 ACACGCACGCCTTCTAATCTT 60.338 47.619 0.00 0.00 0.00 2.40
3041 3375 0.865639 GAACAAACCAGCACACGCAC 60.866 55.000 0.00 0.00 42.27 5.34
3138 3472 8.909708 TGAAATAATTTCACGGTCAATTCATC 57.090 30.769 0.00 0.00 44.21 2.92
3201 3535 2.395988 CTGCACAGTAGGGTGTGGCA 62.396 60.000 6.16 4.16 46.73 4.92
3457 3792 0.553333 GAAGGATTTGGGAGAGGGGG 59.447 60.000 0.00 0.00 0.00 5.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.