Multiple sequence alignment - TraesCS7B01G256900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G256900 chr7B 100.000 5297 0 0 1 5297 476197767 476203063 0.000000e+00 9782.0
1 TraesCS7B01G256900 chr7B 95.691 673 15 7 4639 5297 248538908 248538236 0.000000e+00 1070.0
2 TraesCS7B01G256900 chr7B 85.246 122 16 2 2133 2252 218563212 218563091 2.000000e-24 124.0
3 TraesCS7B01G256900 chr7D 94.988 1716 57 11 1001 2711 452968710 452970401 0.000000e+00 2665.0
4 TraesCS7B01G256900 chr7D 94.208 1174 38 13 3443 4601 452971000 452972158 0.000000e+00 1764.0
5 TraesCS7B01G256900 chr7D 93.387 862 33 4 1 861 454836070 454835232 0.000000e+00 1254.0
6 TraesCS7B01G256900 chr7D 90.469 640 42 12 2724 3362 452970381 452971002 0.000000e+00 826.0
7 TraesCS7B01G256900 chr7D 85.965 114 13 3 2793 2903 230933014 230933127 9.320000e-23 119.0
8 TraesCS7B01G256900 chr7D 98.507 67 1 0 4535 4601 452972147 452972213 9.320000e-23 119.0
9 TraesCS7B01G256900 chr7D 100.000 58 0 0 913 970 452968647 452968704 2.020000e-19 108.0
10 TraesCS7B01G256900 chr7D 98.113 53 1 0 4535 4587 452972202 452972254 5.650000e-15 93.5
11 TraesCS7B01G256900 chr7A 91.748 1236 90 5 910 2138 544264278 544263048 0.000000e+00 1707.0
12 TraesCS7B01G256900 chr7A 87.349 664 63 8 3443 4105 544262098 544261455 0.000000e+00 741.0
13 TraesCS7B01G256900 chr7A 89.805 461 24 5 2247 2703 544263053 544262612 2.140000e-158 569.0
14 TraesCS7B01G256900 chr7A 84.067 477 48 18 2903 3357 544262571 544262101 8.150000e-118 435.0
15 TraesCS7B01G256900 chr7A 82.787 122 12 4 2131 2249 254882833 254882948 3.380000e-17 100.0
16 TraesCS7B01G256900 chr6B 95.576 859 30 5 1 853 134837231 134838087 0.000000e+00 1369.0
17 TraesCS7B01G256900 chr6B 89.256 121 13 0 498 618 654731628 654731748 9.190000e-33 152.0
18 TraesCS7B01G256900 chr6B 94.845 97 4 1 3352 3448 100361315 100361410 3.300000e-32 150.0
19 TraesCS7B01G256900 chr6B 86.916 107 12 2 2793 2897 292801966 292802072 9.320000e-23 119.0
20 TraesCS7B01G256900 chr6B 90.741 54 5 0 2205 2258 278674657 278674604 7.360000e-09 73.1
21 TraesCS7B01G256900 chr3D 93.677 854 38 6 1 853 579081116 579081954 0.000000e+00 1264.0
22 TraesCS7B01G256900 chr3D 95.833 48 2 0 2206 2253 610350790 610350837 1.580000e-10 78.7
23 TraesCS7B01G256900 chrUn 97.767 403 3 2 4639 5035 47634479 47634881 0.000000e+00 689.0
24 TraesCS7B01G256900 chrUn 98.780 246 3 0 5052 5297 47635925 47636170 6.300000e-119 438.0
25 TraesCS7B01G256900 chrUn 82.283 254 32 11 613 858 147188230 147187982 1.930000e-49 207.0
26 TraesCS7B01G256900 chrUn 81.890 254 33 11 613 858 147111622 147111374 9.000000e-48 202.0
27 TraesCS7B01G256900 chrUn 98.824 85 1 0 3360 3444 100223823 100223739 9.190000e-33 152.0
28 TraesCS7B01G256900 chr6A 94.470 434 22 2 14 446 602674277 602673845 0.000000e+00 667.0
29 TraesCS7B01G256900 chr6A 93.779 434 24 2 14 446 83340789 83340358 0.000000e+00 649.0
30 TraesCS7B01G256900 chr6A 89.041 292 24 2 560 851 83332315 83332032 6.520000e-94 355.0
31 TraesCS7B01G256900 chr6A 94.318 176 9 1 676 851 602673133 602672959 8.740000e-68 268.0
32 TraesCS7B01G256900 chr6A 91.477 176 14 1 438 613 602673408 602673234 1.910000e-59 241.0
33 TraesCS7B01G256900 chr6A 97.143 70 2 0 2134 2203 14350988 14351057 9.320000e-23 119.0
34 TraesCS7B01G256900 chr6D 94.240 434 21 4 14 446 412485474 412485904 0.000000e+00 660.0
35 TraesCS7B01G256900 chr6D 88.430 121 8 5 3333 3452 363038053 363038168 1.990000e-29 141.0
36 TraesCS7B01G256900 chr2B 93.548 434 26 2 14 446 132158383 132158815 0.000000e+00 645.0
37 TraesCS7B01G256900 chr2B 93.137 102 5 1 3359 3458 7641710 7641609 1.190000e-31 148.0
38 TraesCS7B01G256900 chr2D 93.318 434 26 2 14 446 80482656 80483087 5.790000e-179 638.0
39 TraesCS7B01G256900 chr2A 92.857 434 29 2 14 446 691631181 691630749 3.480000e-176 628.0
40 TraesCS7B01G256900 chr5A 92.771 415 23 3 438 852 109925956 109926363 1.270000e-165 593.0
41 TraesCS7B01G256900 chr3B 89.362 188 18 2 669 854 760301436 760301249 8.870000e-58 235.0
42 TraesCS7B01G256900 chr3B 90.385 104 8 2 2796 2897 284397336 284397233 9.250000e-28 135.0
43 TraesCS7B01G256900 chr3B 95.833 48 2 0 2206 2253 822193871 822193918 1.580000e-10 78.7
44 TraesCS7B01G256900 chr1D 82.857 245 36 5 611 851 104032770 104032528 1.160000e-51 215.0
45 TraesCS7B01G256900 chr1D 91.667 96 8 0 2803 2898 280691336 280691431 3.330000e-27 134.0
46 TraesCS7B01G256900 chr1D 91.026 78 7 0 2131 2208 141705973 141706050 7.260000e-19 106.0
47 TraesCS7B01G256900 chr5B 84.358 179 26 2 441 618 606484244 606484421 1.960000e-39 174.0
48 TraesCS7B01G256900 chr5B 95.098 102 3 2 3356 3455 33191307 33191408 5.490000e-35 159.0
49 TraesCS7B01G256900 chr5B 97.778 90 1 1 3355 3444 121201348 121201260 2.550000e-33 154.0
50 TraesCS7B01G256900 chr4A 85.135 148 20 2 455 601 177786527 177786673 3.300000e-32 150.0
51 TraesCS7B01G256900 chr4A 89.720 107 9 2 2794 2898 503327988 503328094 9.250000e-28 135.0
52 TraesCS7B01G256900 chr4A 86.957 115 12 2 2788 2899 383544081 383543967 5.570000e-25 126.0
53 TraesCS7B01G256900 chr4A 91.463 82 7 0 2130 2211 340508469 340508550 4.340000e-21 113.0
54 TraesCS7B01G256900 chr4A 88.136 59 6 1 2206 2264 4618646 4618589 9.520000e-08 69.4
55 TraesCS7B01G256900 chr4A 89.286 56 4 2 2190 2244 471931307 471931253 9.520000e-08 69.4
56 TraesCS7B01G256900 chr1A 93.137 102 5 2 3347 3448 561611231 561611330 1.190000e-31 148.0
57 TraesCS7B01G256900 chr1A 91.753 97 8 0 2803 2899 352860525 352860621 9.250000e-28 135.0
58 TraesCS7B01G256900 chr1A 90.123 81 8 0 2131 2211 148958977 148958897 7.260000e-19 106.0
59 TraesCS7B01G256900 chr5D 91.743 109 4 4 3338 3444 538765641 538765536 4.270000e-31 147.0
60 TraesCS7B01G256900 chr5D 88.983 118 9 4 3331 3444 169972164 169972281 5.530000e-30 143.0
61 TraesCS7B01G256900 chr1B 91.753 97 8 0 2803 2899 381389919 381390015 9.250000e-28 135.0
62 TraesCS7B01G256900 chr4B 93.902 82 5 0 2130 2211 270831667 270831748 2.000000e-24 124.0
63 TraesCS7B01G256900 chr4D 84.314 102 13 3 2150 2249 463465614 463465514 4.370000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G256900 chr7B 476197767 476203063 5296 False 9782.00 9782 100.000000 1 5297 1 chr7B.!!$F1 5296
1 TraesCS7B01G256900 chr7B 248538236 248538908 672 True 1070.00 1070 95.691000 4639 5297 1 chr7B.!!$R2 658
2 TraesCS7B01G256900 chr7D 454835232 454836070 838 True 1254.00 1254 93.387000 1 861 1 chr7D.!!$R1 860
3 TraesCS7B01G256900 chr7D 452968647 452972254 3607 False 929.25 2665 96.047500 913 4601 6 chr7D.!!$F2 3688
4 TraesCS7B01G256900 chr7A 544261455 544264278 2823 True 863.00 1707 88.242250 910 4105 4 chr7A.!!$R1 3195
5 TraesCS7B01G256900 chr6B 134837231 134838087 856 False 1369.00 1369 95.576000 1 853 1 chr6B.!!$F2 852
6 TraesCS7B01G256900 chr3D 579081116 579081954 838 False 1264.00 1264 93.677000 1 853 1 chr3D.!!$F1 852
7 TraesCS7B01G256900 chrUn 47634479 47636170 1691 False 563.50 689 98.273500 4639 5297 2 chrUn.!!$F1 658
8 TraesCS7B01G256900 chr6A 602672959 602674277 1318 True 392.00 667 93.421667 14 851 3 chr6A.!!$R3 837

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
892 1388 0.036732 CTGTTAGGGTTGCTGCTGGA 59.963 55.0 0.0 0.0 0.00 3.86 F
893 1389 0.036732 TGTTAGGGTTGCTGCTGGAG 59.963 55.0 0.0 0.0 0.00 3.86 F
894 1390 0.324943 GTTAGGGTTGCTGCTGGAGA 59.675 55.0 0.0 0.0 0.00 3.71 F
976 1472 0.400213 TCCAACGGCAGGAAATCTGT 59.600 50.0 0.0 0.0 45.08 3.41 F
1272 1774 0.459063 GGGTATCGTTTCTTCGCCGT 60.459 55.0 0.0 0.0 0.00 5.68 F
2709 3229 0.871057 CACACACACACACACACACA 59.129 50.0 0.0 0.0 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2750 3276 0.321564 TGGAGGTGTGCATGTGTAGC 60.322 55.000 0.00 0.0 0.0 3.58 R
2838 3370 2.264455 AGTCTCTTGGCATCCTCTTGT 58.736 47.619 0.00 0.0 0.0 3.16 R
2888 3420 6.360148 GCGTGTGATTAGTGCTAGAGTTATAC 59.640 42.308 0.00 0.0 0.0 1.47 R
2899 3431 2.400408 CGTTTTTGCGTGTGATTAGTGC 59.600 45.455 0.00 0.0 0.0 4.40 R
3111 3665 1.667724 CCATTCTCACGGCAGATTGAC 59.332 52.381 8.54 0.0 0.0 3.18 R
4634 5259 1.195674 GCAAGTCTCTCGAAGTTTGGC 59.804 52.381 0.00 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 166 1.241165 CACATGAAGAGCTGCAACCA 58.759 50.000 0.00 0.00 0.00 3.67
186 188 6.183361 ACCATTTTAACAAAAGCTTCATCCCA 60.183 34.615 0.00 0.00 33.22 4.37
249 251 6.265422 AGCTAGCCACTACAAAAGTTTCAATT 59.735 34.615 12.13 0.00 35.76 2.32
545 1002 2.716828 CTACAACCACGAGCGCACG 61.717 63.158 25.44 25.44 39.31 5.34
742 1237 1.086634 GCGGAAGAAGAAGCAGCGAT 61.087 55.000 0.00 0.00 0.00 4.58
748 1243 1.277557 AGAAGAAGCAGCGATCCAACT 59.722 47.619 0.00 0.00 0.00 3.16
854 1350 1.663695 GCGCAGATTAGTGGCCTTTA 58.336 50.000 3.32 0.00 0.00 1.85
857 1353 2.351726 CGCAGATTAGTGGCCTTTACAC 59.648 50.000 3.32 0.00 39.10 2.90
861 1357 5.449177 GCAGATTAGTGGCCTTTACACAATC 60.449 44.000 3.32 7.50 41.21 2.67
862 1358 5.647658 CAGATTAGTGGCCTTTACACAATCA 59.352 40.000 3.32 0.00 41.21 2.57
863 1359 6.150976 CAGATTAGTGGCCTTTACACAATCAA 59.849 38.462 3.32 0.00 41.21 2.57
864 1360 6.891908 AGATTAGTGGCCTTTACACAATCAAT 59.108 34.615 3.32 0.00 41.21 2.57
865 1361 6.909550 TTAGTGGCCTTTACACAATCAATT 57.090 33.333 3.32 0.00 41.21 2.32
866 1362 5.138125 AGTGGCCTTTACACAATCAATTG 57.862 39.130 3.32 0.00 41.21 2.32
867 1363 4.021192 AGTGGCCTTTACACAATCAATTGG 60.021 41.667 3.32 0.00 41.96 3.16
868 1364 4.021544 GTGGCCTTTACACAATCAATTGGA 60.022 41.667 3.32 0.00 41.96 3.53
869 1365 4.220382 TGGCCTTTACACAATCAATTGGAG 59.780 41.667 3.32 0.00 41.96 3.86
870 1366 4.462483 GGCCTTTACACAATCAATTGGAGA 59.538 41.667 5.42 0.00 41.96 3.71
871 1367 5.127682 GGCCTTTACACAATCAATTGGAGAT 59.872 40.000 5.42 0.00 41.96 2.75
872 1368 6.038356 GCCTTTACACAATCAATTGGAGATG 58.962 40.000 5.42 2.67 41.96 2.90
873 1369 6.038356 CCTTTACACAATCAATTGGAGATGC 58.962 40.000 5.42 0.00 41.96 3.91
874 1370 6.127535 CCTTTACACAATCAATTGGAGATGCT 60.128 38.462 5.42 0.00 41.96 3.79
875 1371 4.713824 ACACAATCAATTGGAGATGCTG 57.286 40.909 5.42 4.42 41.96 4.41
876 1372 4.084287 ACACAATCAATTGGAGATGCTGT 58.916 39.130 5.42 4.92 41.96 4.40
877 1373 4.525487 ACACAATCAATTGGAGATGCTGTT 59.475 37.500 5.42 0.00 41.96 3.16
878 1374 5.711506 ACACAATCAATTGGAGATGCTGTTA 59.288 36.000 5.42 0.00 41.96 2.41
879 1375 6.127814 ACACAATCAATTGGAGATGCTGTTAG 60.128 38.462 5.42 0.00 41.96 2.34
880 1376 5.359009 ACAATCAATTGGAGATGCTGTTAGG 59.641 40.000 5.42 0.00 41.96 2.69
881 1377 3.889815 TCAATTGGAGATGCTGTTAGGG 58.110 45.455 5.42 0.00 0.00 3.53
882 1378 3.266772 TCAATTGGAGATGCTGTTAGGGT 59.733 43.478 5.42 0.00 0.00 4.34
883 1379 4.019174 CAATTGGAGATGCTGTTAGGGTT 58.981 43.478 0.00 0.00 0.00 4.11
884 1380 2.787473 TGGAGATGCTGTTAGGGTTG 57.213 50.000 0.00 0.00 0.00 3.77
885 1381 1.340017 TGGAGATGCTGTTAGGGTTGC 60.340 52.381 0.00 0.00 0.00 4.17
886 1382 1.065126 GGAGATGCTGTTAGGGTTGCT 60.065 52.381 0.00 0.00 0.00 3.91
887 1383 2.012673 GAGATGCTGTTAGGGTTGCTG 58.987 52.381 0.00 0.00 0.00 4.41
888 1384 0.453390 GATGCTGTTAGGGTTGCTGC 59.547 55.000 0.00 0.00 0.00 5.25
889 1385 0.038744 ATGCTGTTAGGGTTGCTGCT 59.961 50.000 0.00 0.00 0.00 4.24
890 1386 0.890542 TGCTGTTAGGGTTGCTGCTG 60.891 55.000 0.00 0.00 0.00 4.41
891 1387 1.589716 GCTGTTAGGGTTGCTGCTGG 61.590 60.000 0.00 0.00 0.00 4.85
892 1388 0.036732 CTGTTAGGGTTGCTGCTGGA 59.963 55.000 0.00 0.00 0.00 3.86
893 1389 0.036732 TGTTAGGGTTGCTGCTGGAG 59.963 55.000 0.00 0.00 0.00 3.86
894 1390 0.324943 GTTAGGGTTGCTGCTGGAGA 59.675 55.000 0.00 0.00 0.00 3.71
895 1391 0.615331 TTAGGGTTGCTGCTGGAGAG 59.385 55.000 0.00 0.00 0.00 3.20
896 1392 1.903877 TAGGGTTGCTGCTGGAGAGC 61.904 60.000 0.00 0.00 46.44 4.09
904 1400 4.767255 GCTGGAGAGCACGGTGGG 62.767 72.222 10.60 0.00 45.46 4.61
905 1401 2.997315 CTGGAGAGCACGGTGGGA 60.997 66.667 10.60 0.00 0.00 4.37
906 1402 2.284625 TGGAGAGCACGGTGGGAT 60.285 61.111 10.60 0.00 0.00 3.85
907 1403 1.903877 CTGGAGAGCACGGTGGGATT 61.904 60.000 10.60 0.00 0.00 3.01
908 1404 1.450312 GGAGAGCACGGTGGGATTG 60.450 63.158 10.60 0.00 0.00 2.67
909 1405 1.596934 GAGAGCACGGTGGGATTGA 59.403 57.895 10.60 0.00 0.00 2.57
910 1406 0.741221 GAGAGCACGGTGGGATTGAC 60.741 60.000 10.60 0.00 0.00 3.18
911 1407 1.194781 AGAGCACGGTGGGATTGACT 61.195 55.000 10.60 0.00 0.00 3.41
974 1470 1.683011 CCATCCAACGGCAGGAAATCT 60.683 52.381 0.00 0.00 38.93 2.40
976 1472 0.400213 TCCAACGGCAGGAAATCTGT 59.600 50.000 0.00 0.00 45.08 3.41
1071 1567 2.637383 GGGACGACGTCTGCCTCTT 61.637 63.158 25.87 0.00 32.47 2.85
1103 1599 2.187946 CGCCGGCCAGATCTCTTT 59.812 61.111 23.46 0.00 0.00 2.52
1173 1669 1.599797 CTTTGTTCCCCCGTTCGCT 60.600 57.895 0.00 0.00 0.00 4.93
1272 1774 0.459063 GGGTATCGTTTCTTCGCCGT 60.459 55.000 0.00 0.00 0.00 5.68
1294 1796 6.017109 CCGTAATCTATCCCATCCAAAACTTG 60.017 42.308 0.00 0.00 0.00 3.16
1335 1837 6.811170 CAGTTTGTTGTGGATTTGTTTACTGT 59.189 34.615 0.00 0.00 0.00 3.55
1355 1857 2.423898 CGGACGCCTGGTGGAGTAT 61.424 63.158 12.58 0.00 46.35 2.12
1359 1861 2.483188 GGACGCCTGGTGGAGTATTTAG 60.483 54.545 12.58 0.00 46.35 1.85
1524 2026 3.423154 CAGTCTTTGGCGCGGACC 61.423 66.667 8.83 0.99 0.00 4.46
1600 2102 4.994282 TCCTAGTGTAGAACAGTCCTTCA 58.006 43.478 0.00 0.00 33.15 3.02
1654 2156 1.317613 AATTGTGGTGCGTGTGTCAT 58.682 45.000 0.00 0.00 0.00 3.06
1797 2299 2.905075 CATATGGTTTCTGCACGAGGA 58.095 47.619 0.00 0.00 0.00 3.71
1803 2305 2.210116 GTTTCTGCACGAGGACTTTGA 58.790 47.619 0.00 0.00 0.00 2.69
1818 2320 1.346479 TTTGACGGTGAGGGGGTTCA 61.346 55.000 0.00 0.00 0.00 3.18
1959 2461 4.250464 TGTAAGTTAAAGTGCCATCTCCG 58.750 43.478 0.00 0.00 0.00 4.63
2022 2525 7.646526 TGATCACTTAAACAACCTATCGTATCG 59.353 37.037 0.00 0.00 0.00 2.92
2181 2684 6.254804 AGACGTTTTGGCAGTTTAAATTGAAC 59.745 34.615 14.30 8.43 0.00 3.18
2201 2704 7.209471 TGAACTGCCAAAACGTCTTATATTT 57.791 32.000 0.00 0.00 0.00 1.40
2207 2710 8.730970 TGCCAAAACGTCTTATATTTACAAAC 57.269 30.769 0.00 0.00 0.00 2.93
2243 2746 8.943909 AAACGTCTTATATTTAGGAACAGAGG 57.056 34.615 0.00 0.00 0.00 3.69
2261 2764 5.247564 ACAGAGGGTGTAGTAAGTAAATGCA 59.752 40.000 0.00 0.00 37.75 3.96
2264 2767 7.336931 CAGAGGGTGTAGTAAGTAAATGCATTT 59.663 37.037 26.72 26.72 0.00 2.32
2433 2936 0.938008 GATTAGTAGCTGGCGTTGGC 59.062 55.000 0.00 0.00 38.90 4.52
2484 3001 5.181748 ACACCAAATATGTGCTTCTCTCTC 58.818 41.667 0.00 0.00 37.22 3.20
2485 3002 5.046014 ACACCAAATATGTGCTTCTCTCTCT 60.046 40.000 0.00 0.00 37.22 3.10
2486 3003 5.879223 CACCAAATATGTGCTTCTCTCTCTT 59.121 40.000 0.00 0.00 0.00 2.85
2487 3004 6.036953 CACCAAATATGTGCTTCTCTCTCTTC 59.963 42.308 0.00 0.00 0.00 2.87
2488 3005 5.526846 CCAAATATGTGCTTCTCTCTCTTCC 59.473 44.000 0.00 0.00 0.00 3.46
2489 3006 5.946942 AATATGTGCTTCTCTCTCTTCCA 57.053 39.130 0.00 0.00 0.00 3.53
2490 3007 6.497624 AATATGTGCTTCTCTCTCTTCCAT 57.502 37.500 0.00 0.00 0.00 3.41
2491 3008 3.606595 TGTGCTTCTCTCTCTTCCATG 57.393 47.619 0.00 0.00 0.00 3.66
2492 3009 2.902486 TGTGCTTCTCTCTCTTCCATGT 59.098 45.455 0.00 0.00 0.00 3.21
2493 3010 3.056250 TGTGCTTCTCTCTCTTCCATGTC 60.056 47.826 0.00 0.00 0.00 3.06
2494 3011 2.499289 TGCTTCTCTCTCTTCCATGTCC 59.501 50.000 0.00 0.00 0.00 4.02
2495 3012 2.499289 GCTTCTCTCTCTTCCATGTCCA 59.501 50.000 0.00 0.00 0.00 4.02
2496 3013 3.134442 GCTTCTCTCTCTTCCATGTCCAT 59.866 47.826 0.00 0.00 0.00 3.41
2497 3014 4.695396 CTTCTCTCTCTTCCATGTCCATG 58.305 47.826 0.14 0.14 38.51 3.66
2498 3015 3.717576 TCTCTCTCTTCCATGTCCATGT 58.282 45.455 6.53 0.00 37.11 3.21
2499 3016 4.099633 TCTCTCTCTTCCATGTCCATGTT 58.900 43.478 6.53 0.00 37.11 2.71
2534 3051 3.462483 TGTTTCTGAGCTTTCCACGTA 57.538 42.857 0.00 0.00 0.00 3.57
2585 3102 7.443879 TGCACTATTGTGTTTCTGTGAGAATAA 59.556 33.333 9.05 0.00 45.44 1.40
2586 3103 7.746475 GCACTATTGTGTTTCTGTGAGAATAAC 59.254 37.037 9.05 0.00 45.44 1.89
2587 3104 8.230486 CACTATTGTGTTTCTGTGAGAATAACC 58.770 37.037 0.00 0.00 39.24 2.85
2621 3138 2.744494 GCATCTGGGTGATCTCTGTTCC 60.744 54.545 0.00 0.00 32.05 3.62
2641 3158 5.426689 TCCTTAGCATGACAGAACAATCT 57.573 39.130 0.00 0.00 35.88 2.40
2665 3182 8.530311 TCTATATTTGTTGGTTGTGCATGAAAT 58.470 29.630 0.00 0.00 0.00 2.17
2698 3218 4.814234 TGAATACAAGGAAGACACACACAC 59.186 41.667 0.00 0.00 0.00 3.82
2699 3219 2.779755 ACAAGGAAGACACACACACA 57.220 45.000 0.00 0.00 0.00 3.72
2700 3220 2.356135 ACAAGGAAGACACACACACAC 58.644 47.619 0.00 0.00 0.00 3.82
2701 3221 2.290008 ACAAGGAAGACACACACACACA 60.290 45.455 0.00 0.00 0.00 3.72
2702 3222 2.024176 AGGAAGACACACACACACAC 57.976 50.000 0.00 0.00 0.00 3.82
2703 3223 1.277842 AGGAAGACACACACACACACA 59.722 47.619 0.00 0.00 0.00 3.72
2704 3224 1.396996 GGAAGACACACACACACACAC 59.603 52.381 0.00 0.00 0.00 3.82
2705 3225 2.073056 GAAGACACACACACACACACA 58.927 47.619 0.00 0.00 0.00 3.72
2706 3226 1.438651 AGACACACACACACACACAC 58.561 50.000 0.00 0.00 0.00 3.82
2707 3227 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
2708 3228 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2709 3229 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2710 3230 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2711 3231 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2712 3232 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2713 3233 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2714 3234 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2715 3235 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2716 3236 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2717 3237 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2718 3238 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2719 3239 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2720 3240 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2721 3241 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2722 3242 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2723 3243 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2724 3244 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2725 3245 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2726 3246 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2727 3247 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2728 3248 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2729 3249 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2730 3250 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2731 3251 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2732 3252 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2733 3253 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2734 3254 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2735 3255 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2736 3256 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2737 3257 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2750 3276 4.211164 ACACACACACACATCACTAATTCG 59.789 41.667 0.00 0.00 0.00 3.34
2755 3281 4.625311 CACACACATCACTAATTCGCTACA 59.375 41.667 0.00 0.00 0.00 2.74
2803 3335 8.928448 ACATCTTCTAGGAATGATAGCAACTTA 58.072 33.333 6.84 0.00 0.00 2.24
2815 3347 9.454859 AATGATAGCAACTTATTATTAGGAGGC 57.545 33.333 0.00 0.00 0.00 4.70
2816 3348 7.394816 TGATAGCAACTTATTATTAGGAGGCC 58.605 38.462 0.00 0.00 0.00 5.19
2817 3349 5.646692 AGCAACTTATTATTAGGAGGCCA 57.353 39.130 5.01 0.00 0.00 5.36
2818 3350 6.013554 AGCAACTTATTATTAGGAGGCCAA 57.986 37.500 5.01 0.00 0.00 4.52
2819 3351 6.431722 AGCAACTTATTATTAGGAGGCCAAA 58.568 36.000 5.01 0.00 0.00 3.28
2820 3352 6.547510 AGCAACTTATTATTAGGAGGCCAAAG 59.452 38.462 5.01 0.00 0.00 2.77
2821 3353 6.735968 GCAACTTATTATTAGGAGGCCAAAGC 60.736 42.308 5.01 0.00 38.76 3.51
2837 3369 6.331369 GCCAAAGCCAACATATATACATGT 57.669 37.500 2.69 2.69 40.90 3.21
2838 3370 7.447374 GCCAAAGCCAACATATATACATGTA 57.553 36.000 8.27 8.27 38.19 2.29
2878 3410 9.847224 AGAGACTAGAATACAAAAGGTCAAAAA 57.153 29.630 0.00 0.00 0.00 1.94
2930 3463 1.469308 ACGCAAAAACGACAAAGACCA 59.531 42.857 0.00 0.00 36.70 4.02
2943 3476 4.273318 ACAAAGACCAGGGATAAATCTGC 58.727 43.478 0.00 0.00 0.00 4.26
2972 3521 8.478877 ACATCACTAAATTCCTACTCCTACTTG 58.521 37.037 0.00 0.00 0.00 3.16
2981 3530 6.017400 TCCTACTCCTACTTGTTAAACACG 57.983 41.667 0.00 0.00 0.00 4.49
2992 3541 5.689961 ACTTGTTAAACACGGATCAAATTGC 59.310 36.000 0.00 0.00 0.00 3.56
2993 3542 4.551388 TGTTAAACACGGATCAAATTGCC 58.449 39.130 0.00 0.00 0.00 4.52
3099 3653 7.340232 TGAGCTATTTGTTGCCTTCTTGATATT 59.660 33.333 0.00 0.00 0.00 1.28
3111 3665 8.316946 TGCCTTCTTGATATTCCTGATAGTATG 58.683 37.037 0.00 0.00 0.00 2.39
3165 3719 8.688151 ACCTTCATTCTTGTCTGTACTATAGTC 58.312 37.037 9.12 2.17 0.00 2.59
3238 3792 4.526970 TCTGGCTGATGAACCCTTAAATC 58.473 43.478 0.00 0.00 0.00 2.17
3318 3872 7.385752 CCATTTGTACAGAATTGATTGCTTGTT 59.614 33.333 0.00 0.00 0.00 2.83
3358 3912 8.094798 TGTTACAAATGGAGCTTGTAGTTTAG 57.905 34.615 0.00 0.00 39.68 1.85
3359 3913 7.717875 TGTTACAAATGGAGCTTGTAGTTTAGT 59.282 33.333 0.00 0.00 39.68 2.24
3360 3914 9.211485 GTTACAAATGGAGCTTGTAGTTTAGTA 57.789 33.333 0.00 0.00 39.68 1.82
3361 3915 7.668525 ACAAATGGAGCTTGTAGTTTAGTAC 57.331 36.000 0.00 0.00 35.26 2.73
3362 3916 7.450903 ACAAATGGAGCTTGTAGTTTAGTACT 58.549 34.615 0.00 0.00 41.04 2.73
3363 3917 7.603024 ACAAATGGAGCTTGTAGTTTAGTACTC 59.397 37.037 0.00 0.00 38.33 2.59
3364 3918 5.656213 TGGAGCTTGTAGTTTAGTACTCC 57.344 43.478 0.00 0.00 42.26 3.85
3365 3919 4.465305 TGGAGCTTGTAGTTTAGTACTCCC 59.535 45.833 0.00 0.00 41.43 4.30
3366 3920 4.710865 GGAGCTTGTAGTTTAGTACTCCCT 59.289 45.833 0.00 0.00 38.33 4.20
3367 3921 5.163530 GGAGCTTGTAGTTTAGTACTCCCTC 60.164 48.000 0.00 0.00 38.33 4.30
3368 3922 4.710865 AGCTTGTAGTTTAGTACTCCCTCC 59.289 45.833 0.00 0.00 38.33 4.30
3369 3923 4.439837 GCTTGTAGTTTAGTACTCCCTCCG 60.440 50.000 0.00 0.00 38.33 4.63
3370 3924 4.307032 TGTAGTTTAGTACTCCCTCCGT 57.693 45.455 0.00 0.00 38.33 4.69
3371 3925 4.265073 TGTAGTTTAGTACTCCCTCCGTC 58.735 47.826 0.00 0.00 38.33 4.79
3372 3926 2.732763 AGTTTAGTACTCCCTCCGTCC 58.267 52.381 0.00 0.00 28.23 4.79
3373 3927 1.753649 GTTTAGTACTCCCTCCGTCCC 59.246 57.143 0.00 0.00 0.00 4.46
3374 3928 1.002069 TTAGTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
3375 3929 1.229131 TAGTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
3376 3930 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3377 3931 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3378 3932 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3379 3933 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
3380 3934 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3381 3935 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3382 3936 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3383 3937 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3384 3938 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3385 3939 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3386 3940 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
3387 3941 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
3388 3942 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
3389 3943 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
3390 3944 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
3391 3945 6.925165 TCCGTCCCATAATATAAGAACGTTTC 59.075 38.462 0.46 0.00 0.00 2.78
3392 3946 6.927381 CCGTCCCATAATATAAGAACGTTTCT 59.073 38.462 0.46 0.00 43.15 2.52
3393 3947 7.095774 CCGTCCCATAATATAAGAACGTTTCTG 60.096 40.741 0.46 0.00 40.59 3.02
3394 3948 7.650504 CGTCCCATAATATAAGAACGTTTCTGA 59.349 37.037 0.46 0.00 40.59 3.27
3395 3949 8.762426 GTCCCATAATATAAGAACGTTTCTGAC 58.238 37.037 0.46 0.00 40.59 3.51
3396 3950 8.479689 TCCCATAATATAAGAACGTTTCTGACA 58.520 33.333 0.46 0.00 40.59 3.58
3397 3951 8.548721 CCCATAATATAAGAACGTTTCTGACAC 58.451 37.037 0.46 0.00 40.59 3.67
3398 3952 9.314321 CCATAATATAAGAACGTTTCTGACACT 57.686 33.333 0.46 0.00 40.59 3.55
3402 3956 8.912787 ATATAAGAACGTTTCTGACACTAGTG 57.087 34.615 21.44 21.44 40.59 2.74
3403 3957 4.650754 AGAACGTTTCTGACACTAGTGT 57.349 40.909 28.27 28.27 38.91 3.55
3404 3958 5.762825 AGAACGTTTCTGACACTAGTGTA 57.237 39.130 27.98 10.72 39.38 2.90
3405 3959 5.759963 AGAACGTTTCTGACACTAGTGTAG 58.240 41.667 27.98 22.31 39.38 2.74
3406 3960 5.298777 AGAACGTTTCTGACACTAGTGTAGT 59.701 40.000 27.98 15.35 39.38 2.73
3419 3973 6.579491 ACTAGTGTAGTGTCAAAAACGTTC 57.421 37.500 0.00 0.00 37.69 3.95
3420 3974 6.335777 ACTAGTGTAGTGTCAAAAACGTTCT 58.664 36.000 0.00 0.00 37.69 3.01
3421 3975 6.815142 ACTAGTGTAGTGTCAAAAACGTTCTT 59.185 34.615 0.00 0.00 37.69 2.52
3422 3976 7.975616 ACTAGTGTAGTGTCAAAAACGTTCTTA 59.024 33.333 0.00 0.00 37.69 2.10
3423 3977 7.781548 AGTGTAGTGTCAAAAACGTTCTTAT 57.218 32.000 0.00 0.00 0.00 1.73
3424 3978 8.876275 AGTGTAGTGTCAAAAACGTTCTTATA 57.124 30.769 0.00 0.00 0.00 0.98
3425 3979 9.485206 AGTGTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 0.00 0.00 0.00 0.86
3431 3985 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
3432 3986 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
3433 3987 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
3434 3988 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
3435 3989 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
3436 3990 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
3437 3991 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
3438 3992 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
3439 3993 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
3440 3994 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3441 3995 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3482 4036 7.336931 CAGCTATGGTTAAACTACCTTTCATGT 59.663 37.037 0.00 0.00 39.04 3.21
3484 4038 6.834168 ATGGTTAAACTACCTTTCATGTGG 57.166 37.500 0.00 0.00 39.04 4.17
3537 4091 4.342092 GTGGGAATACATTGGAAGAATGGG 59.658 45.833 0.00 0.00 32.14 4.00
3539 4093 4.829492 GGGAATACATTGGAAGAATGGGAG 59.171 45.833 0.00 0.00 32.14 4.30
3561 4115 7.403231 GGGAGAAGTAGGATATTTCATATGGGA 59.597 40.741 2.13 0.00 39.48 4.37
3580 4134 5.947663 TGGGATCTCCTTTTGTTTTCACTA 58.052 37.500 0.00 0.00 36.20 2.74
3591 4145 8.239998 CCTTTTGTTTTCACTATTCAGGATCTC 58.760 37.037 0.00 0.00 0.00 2.75
3600 4154 9.877178 TTCACTATTCAGGATCTCTTTACTTTC 57.123 33.333 0.00 0.00 0.00 2.62
3605 4159 6.591750 TCAGGATCTCTTTACTTTCGTTCT 57.408 37.500 0.00 0.00 0.00 3.01
3646 4200 6.647334 TCCTTCATCACATAAAAAGTTGCA 57.353 33.333 0.00 0.00 0.00 4.08
3663 4217 8.770438 AAAGTTGCATTAAGTTGTTGAAGAAA 57.230 26.923 0.00 0.00 32.34 2.52
3745 4304 1.748493 TGCCACTTCTCTTTTGCGTTT 59.252 42.857 0.00 0.00 0.00 3.60
3772 4331 5.200368 ACTCGCCAAACATCAAAGAAATT 57.800 34.783 0.00 0.00 0.00 1.82
3860 4419 4.694037 CACTGAAGAAATGAGACAGCATCA 59.306 41.667 0.00 0.00 32.67 3.07
3978 4537 6.655425 GCTCCTAAAACTAATGTTTCAGGTCT 59.345 38.462 9.78 0.00 46.70 3.85
4005 4564 2.985847 GTTTCTGGGGCAAGCGCT 60.986 61.111 2.64 2.64 38.60 5.92
4021 4580 2.289565 GCGCTAGCAGAAATACCCTTT 58.710 47.619 16.45 0.00 44.35 3.11
4066 4626 5.185828 GTGGATCTGCCCTCTTTTATGTTTT 59.814 40.000 0.00 0.00 34.97 2.43
4086 4646 6.702723 TGTTTTGTAGCAACTAGTGTAACGAT 59.297 34.615 0.00 0.00 45.86 3.73
4134 4694 2.834549 AGCTCTCCCTTTTCTCATCGAA 59.165 45.455 0.00 0.00 0.00 3.71
4135 4695 3.118811 AGCTCTCCCTTTTCTCATCGAAG 60.119 47.826 0.00 0.00 32.21 3.79
4213 4773 4.863131 GTGTTCTACTGTTAGACCATTCCG 59.137 45.833 0.00 0.00 33.81 4.30
4288 4852 3.925913 CCGTTTGTAATGCAAGAAATGGG 59.074 43.478 10.17 0.91 35.92 4.00
4369 4939 4.083324 GGATTGTGTTTCTCATCTTTGCGA 60.083 41.667 0.00 0.00 0.00 5.10
4370 4940 4.891627 TTGTGTTTCTCATCTTTGCGAA 57.108 36.364 0.00 0.00 0.00 4.70
4371 4941 4.891627 TGTGTTTCTCATCTTTGCGAAA 57.108 36.364 0.00 0.00 34.94 3.46
4377 4947 8.915654 GTGTTTCTCATCTTTGCGAAAAATAAT 58.084 29.630 0.00 0.00 38.06 1.28
4385 4955 5.478679 TCTTTGCGAAAAATAATGGGGAGAA 59.521 36.000 0.00 0.00 0.00 2.87
4463 5033 1.940613 AGTTGGAAGTTGAACTCGTGC 59.059 47.619 0.00 0.00 0.00 5.34
4518 5088 2.107950 TTAAGTCCAGCCCGTTGATG 57.892 50.000 0.00 0.00 0.00 3.07
4565 5135 8.665685 GTGGTAAGAAACTAACATGAACATAGG 58.334 37.037 0.00 0.00 0.00 2.57
4601 5226 3.952323 TGATTGAAACAACGGGTGGTAAA 59.048 39.130 0.00 0.00 0.00 2.01
4602 5227 4.036971 TGATTGAAACAACGGGTGGTAAAG 59.963 41.667 0.00 0.00 0.00 1.85
4603 5228 3.002038 TGAAACAACGGGTGGTAAAGT 57.998 42.857 0.00 0.00 0.00 2.66
4605 5230 4.521146 TGAAACAACGGGTGGTAAAGTAA 58.479 39.130 0.00 0.00 0.00 2.24
4609 5234 7.447853 TGAAACAACGGGTGGTAAAGTAATAAT 59.552 33.333 0.00 0.00 0.00 1.28
4610 5235 7.764141 AACAACGGGTGGTAAAGTAATAATT 57.236 32.000 0.00 0.00 0.00 1.40
4611 5236 7.381766 ACAACGGGTGGTAAAGTAATAATTC 57.618 36.000 0.00 0.00 0.00 2.17
4613 5238 5.118286 ACGGGTGGTAAAGTAATAATTCGG 58.882 41.667 0.00 0.00 0.00 4.30
4614 5239 5.118286 CGGGTGGTAAAGTAATAATTCGGT 58.882 41.667 0.00 0.00 0.00 4.69
4615 5240 6.127196 ACGGGTGGTAAAGTAATAATTCGGTA 60.127 38.462 0.00 0.00 0.00 4.02
4616 5241 6.930722 CGGGTGGTAAAGTAATAATTCGGTAT 59.069 38.462 0.00 0.00 0.00 2.73
4617 5242 7.116805 CGGGTGGTAAAGTAATAATTCGGTATC 59.883 40.741 0.00 0.00 0.00 2.24
4618 5243 8.152898 GGGTGGTAAAGTAATAATTCGGTATCT 58.847 37.037 0.00 0.00 0.00 1.98
4619 5244 9.551734 GGTGGTAAAGTAATAATTCGGTATCTT 57.448 33.333 0.00 0.00 0.00 2.40
4632 5257 5.327616 TCGGTATCTTACGAAAACCATCA 57.672 39.130 0.00 0.00 36.01 3.07
4633 5258 5.722263 TCGGTATCTTACGAAAACCATCAA 58.278 37.500 0.00 0.00 36.01 2.57
4634 5259 5.808540 TCGGTATCTTACGAAAACCATCAAG 59.191 40.000 0.00 0.00 36.01 3.02
4635 5260 5.501897 CGGTATCTTACGAAAACCATCAAGC 60.502 44.000 0.00 0.00 31.87 4.01
4636 5261 4.965119 ATCTTACGAAAACCATCAAGCC 57.035 40.909 0.00 0.00 0.00 4.35
4637 5262 3.745799 TCTTACGAAAACCATCAAGCCA 58.254 40.909 0.00 0.00 0.00 4.75
4814 5452 1.474077 CTTTTCCCATTCCTCCAAGCG 59.526 52.381 0.00 0.00 0.00 4.68
4955 5598 1.616628 TCCAGCCTTCTCCTTCCCC 60.617 63.158 0.00 0.00 0.00 4.81
5043 5686 2.892425 CTCTTCCACGGATGGCGC 60.892 66.667 0.00 0.00 46.80 6.53
5045 5688 2.436646 CTTCCACGGATGGCGCTT 60.437 61.111 7.64 0.00 46.80 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 166 6.825610 TGTGGGATGAAGCTTTTGTTAAAAT 58.174 32.000 0.00 0.00 0.00 1.82
186 188 4.889409 TCTGGTTGAAGCTTTTTCATCTGT 59.111 37.500 0.00 0.00 0.00 3.41
249 251 7.341445 ACTTTTCATGTGTACCTAAAAAGCA 57.659 32.000 10.31 0.00 37.27 3.91
304 306 5.869579 TCTGGTAGAAGCTTTTTCATCTGT 58.130 37.500 0.00 0.00 0.00 3.41
482 929 1.601171 GGTGTGATGCCTCAGCTCT 59.399 57.895 0.00 0.00 40.80 4.09
664 1137 1.155390 CCCTCCGGTAGCCATCCTA 59.845 63.158 0.00 0.00 0.00 2.94
706 1201 1.485838 CGCTCGCTGAATCGCATCTT 61.486 55.000 0.00 0.00 0.00 2.40
854 1350 4.084287 ACAGCATCTCCAATTGATTGTGT 58.916 39.130 7.12 0.00 36.06 3.72
857 1353 5.221185 CCCTAACAGCATCTCCAATTGATTG 60.221 44.000 7.12 0.05 37.52 2.67
861 1357 3.624777 ACCCTAACAGCATCTCCAATTG 58.375 45.455 0.00 0.00 0.00 2.32
862 1358 4.019174 CAACCCTAACAGCATCTCCAATT 58.981 43.478 0.00 0.00 0.00 2.32
863 1359 3.624777 CAACCCTAACAGCATCTCCAAT 58.375 45.455 0.00 0.00 0.00 3.16
864 1360 2.879756 GCAACCCTAACAGCATCTCCAA 60.880 50.000 0.00 0.00 0.00 3.53
865 1361 1.340017 GCAACCCTAACAGCATCTCCA 60.340 52.381 0.00 0.00 0.00 3.86
866 1362 1.065126 AGCAACCCTAACAGCATCTCC 60.065 52.381 0.00 0.00 0.00 3.71
867 1363 2.012673 CAGCAACCCTAACAGCATCTC 58.987 52.381 0.00 0.00 0.00 2.75
868 1364 1.952367 GCAGCAACCCTAACAGCATCT 60.952 52.381 0.00 0.00 0.00 2.90
869 1365 0.453390 GCAGCAACCCTAACAGCATC 59.547 55.000 0.00 0.00 0.00 3.91
870 1366 0.038744 AGCAGCAACCCTAACAGCAT 59.961 50.000 0.00 0.00 0.00 3.79
871 1367 0.890542 CAGCAGCAACCCTAACAGCA 60.891 55.000 0.00 0.00 0.00 4.41
872 1368 1.589716 CCAGCAGCAACCCTAACAGC 61.590 60.000 0.00 0.00 0.00 4.40
873 1369 0.036732 TCCAGCAGCAACCCTAACAG 59.963 55.000 0.00 0.00 0.00 3.16
874 1370 0.036732 CTCCAGCAGCAACCCTAACA 59.963 55.000 0.00 0.00 0.00 2.41
875 1371 0.324943 TCTCCAGCAGCAACCCTAAC 59.675 55.000 0.00 0.00 0.00 2.34
876 1372 0.615331 CTCTCCAGCAGCAACCCTAA 59.385 55.000 0.00 0.00 0.00 2.69
877 1373 1.903877 GCTCTCCAGCAGCAACCCTA 61.904 60.000 0.00 0.00 46.06 3.53
878 1374 3.076092 CTCTCCAGCAGCAACCCT 58.924 61.111 0.00 0.00 0.00 4.34
879 1375 2.749441 GCTCTCCAGCAGCAACCC 60.749 66.667 0.00 0.00 46.06 4.11
888 1384 1.903877 AATCCCACCGTGCTCTCCAG 61.904 60.000 0.00 0.00 0.00 3.86
889 1385 1.918293 AATCCCACCGTGCTCTCCA 60.918 57.895 0.00 0.00 0.00 3.86
890 1386 1.450312 CAATCCCACCGTGCTCTCC 60.450 63.158 0.00 0.00 0.00 3.71
891 1387 0.741221 GTCAATCCCACCGTGCTCTC 60.741 60.000 0.00 0.00 0.00 3.20
892 1388 1.194781 AGTCAATCCCACCGTGCTCT 61.195 55.000 0.00 0.00 0.00 4.09
893 1389 1.021390 CAGTCAATCCCACCGTGCTC 61.021 60.000 0.00 0.00 0.00 4.26
894 1390 1.003355 CAGTCAATCCCACCGTGCT 60.003 57.895 0.00 0.00 0.00 4.40
895 1391 0.392998 ATCAGTCAATCCCACCGTGC 60.393 55.000 0.00 0.00 0.00 5.34
896 1392 1.372582 CATCAGTCAATCCCACCGTG 58.627 55.000 0.00 0.00 0.00 4.94
897 1393 0.253044 CCATCAGTCAATCCCACCGT 59.747 55.000 0.00 0.00 0.00 4.83
898 1394 1.097547 GCCATCAGTCAATCCCACCG 61.098 60.000 0.00 0.00 0.00 4.94
899 1395 1.097547 CGCCATCAGTCAATCCCACC 61.098 60.000 0.00 0.00 0.00 4.61
900 1396 0.392998 ACGCCATCAGTCAATCCCAC 60.393 55.000 0.00 0.00 0.00 4.61
901 1397 0.327924 AACGCCATCAGTCAATCCCA 59.672 50.000 0.00 0.00 0.00 4.37
902 1398 1.017387 GAACGCCATCAGTCAATCCC 58.983 55.000 0.00 0.00 0.00 3.85
903 1399 0.652592 CGAACGCCATCAGTCAATCC 59.347 55.000 0.00 0.00 0.00 3.01
904 1400 0.026803 GCGAACGCCATCAGTCAATC 59.973 55.000 8.03 0.00 34.56 2.67
905 1401 0.391661 AGCGAACGCCATCAGTCAAT 60.392 50.000 15.44 0.00 43.17 2.57
906 1402 1.005037 AGCGAACGCCATCAGTCAA 60.005 52.632 15.44 0.00 43.17 3.18
907 1403 1.446099 GAGCGAACGCCATCAGTCA 60.446 57.895 15.44 0.00 43.17 3.41
908 1404 2.508891 CGAGCGAACGCCATCAGTC 61.509 63.158 15.44 4.88 43.17 3.51
909 1405 2.507102 CGAGCGAACGCCATCAGT 60.507 61.111 15.44 0.00 43.17 3.41
910 1406 2.202610 TCGAGCGAACGCCATCAG 60.203 61.111 15.44 3.58 43.17 2.90
911 1407 2.202610 CTCGAGCGAACGCCATCA 60.203 61.111 15.44 0.00 43.17 3.07
974 1470 2.210116 GGTGAAAGAAAGCACGAGACA 58.790 47.619 0.00 0.00 35.91 3.41
976 1472 1.872237 CGGGTGAAAGAAAGCACGAGA 60.872 52.381 0.00 0.00 35.91 4.04
1045 1541 4.351054 ACGTCGTCCCGGGTAGGT 62.351 66.667 22.86 15.68 38.74 3.08
1046 1542 3.512516 GACGTCGTCCCGGGTAGG 61.513 72.222 22.86 15.03 40.63 3.18
1047 1543 2.437359 AGACGTCGTCCCGGGTAG 60.437 66.667 22.86 16.01 32.18 3.18
1048 1544 2.747460 CAGACGTCGTCCCGGGTA 60.747 66.667 22.86 4.13 32.18 3.69
1064 1560 1.258445 GGAGACGAAGGGAAGAGGCA 61.258 60.000 0.00 0.00 0.00 4.75
1101 1597 3.712907 CCGGAGAAGGGGCGGAAA 61.713 66.667 0.00 0.00 0.00 3.13
1259 1761 3.424529 GGATAGATTACGGCGAAGAAACG 59.575 47.826 16.62 0.00 0.00 3.60
1294 1796 4.080299 ACAAACTGGATGGATAGAGGAACC 60.080 45.833 0.00 0.00 0.00 3.62
1295 1797 5.104259 ACAAACTGGATGGATAGAGGAAC 57.896 43.478 0.00 0.00 0.00 3.62
1355 1857 9.292195 CCCCAAAATCTTTTCAGTACTACTAAA 57.708 33.333 0.00 0.00 0.00 1.85
1359 1861 5.710567 AGCCCCAAAATCTTTTCAGTACTAC 59.289 40.000 0.00 0.00 0.00 2.73
1584 2086 2.589720 TCCGTGAAGGACTGTTCTACA 58.410 47.619 0.00 0.00 45.98 2.74
1797 2299 1.350310 AACCCCCTCACCGTCAAAGT 61.350 55.000 0.00 0.00 0.00 2.66
1803 2305 3.622826 CGTGAACCCCCTCACCGT 61.623 66.667 0.00 0.00 42.34 4.83
1951 2453 5.786264 AGTTATACTGTTACCGGAGATGG 57.214 43.478 9.46 0.00 0.00 3.51
2015 2518 4.330620 GGCAAATTCAAGTAACCGATACGA 59.669 41.667 0.00 0.00 39.62 3.43
2022 2525 5.904362 AGATCTGGCAAATTCAAGTAACC 57.096 39.130 0.00 0.00 0.00 2.85
2181 2684 8.846607 GTTTGTAAATATAAGACGTTTTGGCAG 58.153 33.333 0.83 0.00 0.00 4.85
2201 2704 6.108015 AGACGTTTTGGTAGTTCAGTTTGTA 58.892 36.000 0.00 0.00 0.00 2.41
2243 2746 6.967199 GCAGAAATGCATTTACTTACTACACC 59.033 38.462 24.15 7.69 34.41 4.16
2261 2764 5.927281 ATGAACAGCAATAAGGCAGAAAT 57.073 34.783 0.00 0.00 35.83 2.17
2264 2767 4.334552 TGAATGAACAGCAATAAGGCAGA 58.665 39.130 0.00 0.00 35.83 4.26
2433 2936 2.797156 CAGTGGAAAGACAGACTCAACG 59.203 50.000 0.00 0.00 0.00 4.10
2484 3001 5.430886 TGTCTATCAACATGGACATGGAAG 58.569 41.667 15.94 6.03 43.55 3.46
2485 3002 5.434182 TGTCTATCAACATGGACATGGAA 57.566 39.130 15.94 2.32 43.55 3.53
2491 3008 5.824904 AAGCAATGTCTATCAACATGGAC 57.175 39.130 0.00 0.00 39.76 4.02
2492 3009 5.711506 ACAAAGCAATGTCTATCAACATGGA 59.288 36.000 0.00 0.00 39.76 3.41
2493 3010 5.957798 ACAAAGCAATGTCTATCAACATGG 58.042 37.500 0.00 0.00 39.76 3.66
2494 3011 7.811236 AGAAACAAAGCAATGTCTATCAACATG 59.189 33.333 0.00 0.00 39.76 3.21
2495 3012 7.811236 CAGAAACAAAGCAATGTCTATCAACAT 59.189 33.333 0.00 0.00 41.60 2.71
2496 3013 7.013178 TCAGAAACAAAGCAATGTCTATCAACA 59.987 33.333 0.00 0.00 31.81 3.33
2497 3014 7.362662 TCAGAAACAAAGCAATGTCTATCAAC 58.637 34.615 0.00 0.00 31.81 3.18
2498 3015 7.509141 TCAGAAACAAAGCAATGTCTATCAA 57.491 32.000 0.00 0.00 31.81 2.57
2499 3016 6.348786 GCTCAGAAACAAAGCAATGTCTATCA 60.349 38.462 0.00 0.00 36.06 2.15
2558 3075 6.293626 ATTCTCACAGAAACACAATAGTGCAC 60.294 38.462 9.40 9.40 41.68 4.57
2611 3128 4.713814 TCTGTCATGCTAAGGAACAGAGAT 59.286 41.667 6.98 0.00 0.00 2.75
2641 3158 9.499479 AAATTTCATGCACAACCAACAAATATA 57.501 25.926 0.00 0.00 0.00 0.86
2665 3182 7.338196 TGTCTTCCTTGTATTCACACAGAAAAA 59.662 33.333 0.00 0.00 40.22 1.94
2698 3218 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2699 3219 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2700 3220 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2701 3221 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2702 3222 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2703 3223 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2704 3224 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2705 3225 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2706 3226 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2707 3227 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2708 3228 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2709 3229 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2710 3230 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2711 3231 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2712 3232 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2713 3233 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2714 3234 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2715 3235 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2716 3236 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2717 3237 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2718 3238 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2719 3239 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2720 3240 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2721 3241 1.737236 GATGTGTGTGTGTGTGTGTGT 59.263 47.619 0.00 0.00 0.00 3.72
2722 3242 1.736681 TGATGTGTGTGTGTGTGTGTG 59.263 47.619 0.00 0.00 0.00 3.82
2723 3243 1.737236 GTGATGTGTGTGTGTGTGTGT 59.263 47.619 0.00 0.00 0.00 3.72
2724 3244 2.009051 AGTGATGTGTGTGTGTGTGTG 58.991 47.619 0.00 0.00 0.00 3.82
2725 3245 2.401583 AGTGATGTGTGTGTGTGTGT 57.598 45.000 0.00 0.00 0.00 3.72
2726 3246 5.422666 AATTAGTGATGTGTGTGTGTGTG 57.577 39.130 0.00 0.00 0.00 3.82
2727 3247 4.211164 CGAATTAGTGATGTGTGTGTGTGT 59.789 41.667 0.00 0.00 0.00 3.72
2728 3248 4.701361 CGAATTAGTGATGTGTGTGTGTG 58.299 43.478 0.00 0.00 0.00 3.82
2729 3249 3.186409 GCGAATTAGTGATGTGTGTGTGT 59.814 43.478 0.00 0.00 0.00 3.72
2730 3250 3.433274 AGCGAATTAGTGATGTGTGTGTG 59.567 43.478 0.00 0.00 0.00 3.82
2731 3251 3.664107 AGCGAATTAGTGATGTGTGTGT 58.336 40.909 0.00 0.00 0.00 3.72
2732 3252 4.625311 TGTAGCGAATTAGTGATGTGTGTG 59.375 41.667 0.00 0.00 0.00 3.82
2733 3253 4.625742 GTGTAGCGAATTAGTGATGTGTGT 59.374 41.667 0.00 0.00 0.00 3.72
2734 3254 4.625311 TGTGTAGCGAATTAGTGATGTGTG 59.375 41.667 0.00 0.00 0.00 3.82
2735 3255 4.816392 TGTGTAGCGAATTAGTGATGTGT 58.184 39.130 0.00 0.00 0.00 3.72
2736 3256 5.731278 CATGTGTAGCGAATTAGTGATGTG 58.269 41.667 0.00 0.00 0.00 3.21
2737 3257 4.271049 GCATGTGTAGCGAATTAGTGATGT 59.729 41.667 0.00 0.00 0.00 3.06
2750 3276 0.321564 TGGAGGTGTGCATGTGTAGC 60.322 55.000 0.00 0.00 0.00 3.58
2811 3343 8.658992 ACATGTATATATGTTGGCTTTGGCCTC 61.659 40.741 9.15 2.89 45.29 4.70
2812 3344 6.920448 ACATGTATATATGTTGGCTTTGGCCT 60.920 38.462 9.15 0.00 45.29 5.19
2813 3345 5.243730 ACATGTATATATGTTGGCTTTGGCC 59.756 40.000 9.15 0.00 43.88 5.36
2815 3347 8.389779 TGTACATGTATATATGTTGGCTTTGG 57.610 34.615 18.75 0.00 41.31 3.28
2816 3348 9.882996 CTTGTACATGTATATATGTTGGCTTTG 57.117 33.333 18.75 2.60 41.31 2.77
2817 3349 9.845740 TCTTGTACATGTATATATGTTGGCTTT 57.154 29.630 18.75 0.00 41.31 3.51
2818 3350 9.494271 CTCTTGTACATGTATATATGTTGGCTT 57.506 33.333 18.75 0.00 41.31 4.35
2819 3351 8.097038 CCTCTTGTACATGTATATATGTTGGCT 58.903 37.037 18.75 0.00 41.31 4.75
2820 3352 8.094548 TCCTCTTGTACATGTATATATGTTGGC 58.905 37.037 18.75 10.97 41.31 4.52
2823 3355 9.658799 GCATCCTCTTGTACATGTATATATGTT 57.341 33.333 18.75 5.39 41.31 2.71
2824 3356 8.260818 GGCATCCTCTTGTACATGTATATATGT 58.739 37.037 17.81 17.81 43.34 2.29
2825 3357 8.260114 TGGCATCCTCTTGTACATGTATATATG 58.740 37.037 9.18 7.84 0.00 1.78
2826 3358 8.379428 TGGCATCCTCTTGTACATGTATATAT 57.621 34.615 9.18 0.00 0.00 0.86
2827 3359 7.790782 TGGCATCCTCTTGTACATGTATATA 57.209 36.000 9.18 0.00 0.00 0.86
2828 3360 6.686484 TGGCATCCTCTTGTACATGTATAT 57.314 37.500 9.18 0.00 0.00 0.86
2829 3361 6.326323 TCTTGGCATCCTCTTGTACATGTATA 59.674 38.462 9.18 3.08 0.00 1.47
2830 3362 5.130975 TCTTGGCATCCTCTTGTACATGTAT 59.869 40.000 9.18 0.00 0.00 2.29
2831 3363 4.469586 TCTTGGCATCCTCTTGTACATGTA 59.530 41.667 0.08 0.08 0.00 2.29
2832 3364 3.264193 TCTTGGCATCCTCTTGTACATGT 59.736 43.478 2.69 2.69 0.00 3.21
2833 3365 3.875727 CTCTTGGCATCCTCTTGTACATG 59.124 47.826 0.00 0.00 0.00 3.21
2834 3366 3.776969 TCTCTTGGCATCCTCTTGTACAT 59.223 43.478 0.00 0.00 0.00 2.29
2835 3367 3.055819 GTCTCTTGGCATCCTCTTGTACA 60.056 47.826 0.00 0.00 0.00 2.90
2836 3368 3.196685 AGTCTCTTGGCATCCTCTTGTAC 59.803 47.826 0.00 0.00 0.00 2.90
2837 3369 3.445008 AGTCTCTTGGCATCCTCTTGTA 58.555 45.455 0.00 0.00 0.00 2.41
2838 3370 2.264455 AGTCTCTTGGCATCCTCTTGT 58.736 47.619 0.00 0.00 0.00 3.16
2878 3410 8.243961 AGTGCTAGAGTTATACTGATGATGTT 57.756 34.615 0.00 0.00 0.00 2.71
2888 3420 6.360148 GCGTGTGATTAGTGCTAGAGTTATAC 59.640 42.308 0.00 0.00 0.00 1.47
2899 3431 2.400408 CGTTTTTGCGTGTGATTAGTGC 59.600 45.455 0.00 0.00 0.00 4.40
2930 3463 2.705658 TGATGTCCGCAGATTTATCCCT 59.294 45.455 0.00 0.00 0.00 4.20
2943 3476 5.069251 AGGAGTAGGAATTTAGTGATGTCCG 59.931 44.000 0.00 0.00 33.38 4.79
2972 3521 3.606346 CGGCAATTTGATCCGTGTTTAAC 59.394 43.478 0.00 0.00 38.47 2.01
3007 3556 6.607689 CCAAGCAAATTACACTTCGAATACA 58.392 36.000 0.00 0.00 0.00 2.29
3099 3653 4.021981 CGGCAGATTGACATACTATCAGGA 60.022 45.833 0.00 0.00 34.22 3.86
3111 3665 1.667724 CCATTCTCACGGCAGATTGAC 59.332 52.381 8.54 0.00 0.00 3.18
3358 3912 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
3359 3913 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
3360 3914 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
3361 3915 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3362 3916 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3363 3917 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
3364 3918 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
3365 3919 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
3366 3920 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
3367 3921 6.927381 AGAAACGTTCTTATATTATGGGACGG 59.073 38.462 0.00 1.76 36.36 4.79
3368 3922 7.650504 TCAGAAACGTTCTTATATTATGGGACG 59.349 37.037 0.00 9.33 38.11 4.79
3369 3923 8.762426 GTCAGAAACGTTCTTATATTATGGGAC 58.238 37.037 0.00 0.00 38.11 4.46
3370 3924 8.479689 TGTCAGAAACGTTCTTATATTATGGGA 58.520 33.333 0.00 0.00 38.11 4.37
3371 3925 8.548721 GTGTCAGAAACGTTCTTATATTATGGG 58.451 37.037 0.00 0.00 38.11 4.00
3372 3926 9.314321 AGTGTCAGAAACGTTCTTATATTATGG 57.686 33.333 0.00 0.00 38.11 2.74
3376 3930 9.355215 CACTAGTGTCAGAAACGTTCTTATATT 57.645 33.333 15.06 0.00 38.11 1.28
3377 3931 8.521176 ACACTAGTGTCAGAAACGTTCTTATAT 58.479 33.333 22.95 0.00 40.24 0.86
3378 3932 7.879070 ACACTAGTGTCAGAAACGTTCTTATA 58.121 34.615 22.95 0.00 40.24 0.98
3379 3933 6.746120 ACACTAGTGTCAGAAACGTTCTTAT 58.254 36.000 22.95 0.00 40.24 1.73
3380 3934 6.140303 ACACTAGTGTCAGAAACGTTCTTA 57.860 37.500 22.95 0.00 40.24 2.10
3381 3935 5.007385 ACACTAGTGTCAGAAACGTTCTT 57.993 39.130 22.95 0.00 40.24 2.52
3382 3936 4.650754 ACACTAGTGTCAGAAACGTTCT 57.349 40.909 22.95 0.00 40.24 3.01
3383 3937 5.517904 ACTACACTAGTGTCAGAAACGTTC 58.482 41.667 31.11 0.00 43.74 3.95
3384 3938 5.511234 ACTACACTAGTGTCAGAAACGTT 57.489 39.130 31.11 6.17 43.74 3.99
3396 3950 6.335777 AGAACGTTTTTGACACTACACTAGT 58.664 36.000 0.46 0.00 40.28 2.57
3397 3951 6.823678 AGAACGTTTTTGACACTACACTAG 57.176 37.500 0.46 0.00 0.00 2.57
3398 3952 8.876275 ATAAGAACGTTTTTGACACTACACTA 57.124 30.769 13.87 0.00 0.00 2.74
3399 3953 7.781548 ATAAGAACGTTTTTGACACTACACT 57.218 32.000 13.87 0.00 0.00 3.55
3405 3959 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
3406 3960 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
3407 3961 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
3408 3962 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
3409 3963 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
3410 3964 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
3411 3965 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
3412 3966 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
3413 3967 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
3414 3968 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
3415 3969 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
3416 3970 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
3417 3971 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3418 3972 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3419 3973 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3420 3974 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3421 3975 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3422 3976 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3423 3977 3.140707 TGTACTCCCTCCGTCCCATAATA 59.859 47.826 0.00 0.00 0.00 0.98
3424 3978 2.090943 TGTACTCCCTCCGTCCCATAAT 60.091 50.000 0.00 0.00 0.00 1.28
3425 3979 1.288633 TGTACTCCCTCCGTCCCATAA 59.711 52.381 0.00 0.00 0.00 1.90
3426 3980 0.928505 TGTACTCCCTCCGTCCCATA 59.071 55.000 0.00 0.00 0.00 2.74
3427 3981 0.264955 ATGTACTCCCTCCGTCCCAT 59.735 55.000 0.00 0.00 0.00 4.00
3428 3982 0.042131 AATGTACTCCCTCCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
3429 3983 1.134491 CAAATGTACTCCCTCCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46
3430 3984 1.553704 ACAAATGTACTCCCTCCGTCC 59.446 52.381 0.00 0.00 0.00 4.79
3431 3985 3.259902 GAACAAATGTACTCCCTCCGTC 58.740 50.000 0.00 0.00 0.00 4.79
3432 3986 2.635915 TGAACAAATGTACTCCCTCCGT 59.364 45.455 0.00 0.00 0.00 4.69
3433 3987 3.328382 TGAACAAATGTACTCCCTCCG 57.672 47.619 0.00 0.00 0.00 4.63
3434 3988 4.200092 GGATGAACAAATGTACTCCCTCC 58.800 47.826 0.00 0.00 0.00 4.30
3435 3989 4.843728 TGGATGAACAAATGTACTCCCTC 58.156 43.478 0.00 0.00 0.00 4.30
3436 3990 4.848357 CTGGATGAACAAATGTACTCCCT 58.152 43.478 0.00 0.00 0.00 4.20
3437 3991 3.378427 GCTGGATGAACAAATGTACTCCC 59.622 47.826 0.00 0.00 0.00 4.30
3438 3992 4.265073 AGCTGGATGAACAAATGTACTCC 58.735 43.478 0.00 0.00 0.00 3.85
3439 3993 6.017605 CCATAGCTGGATGAACAAATGTACTC 60.018 42.308 0.00 0.00 46.37 2.59
3440 3994 5.824624 CCATAGCTGGATGAACAAATGTACT 59.175 40.000 0.00 0.00 46.37 2.73
3441 3995 5.590259 ACCATAGCTGGATGAACAAATGTAC 59.410 40.000 0.00 0.00 46.37 2.90
3484 4038 3.190874 CGAGAAGGACAAAGGCTATGTC 58.809 50.000 8.07 8.07 45.08 3.06
3500 4054 1.112916 TCCCACAGCAGACACGAGAA 61.113 55.000 0.00 0.00 0.00 2.87
3503 4057 1.067142 GTATTCCCACAGCAGACACGA 60.067 52.381 0.00 0.00 0.00 4.35
3561 4115 7.944554 TCCTGAATAGTGAAAACAAAAGGAGAT 59.055 33.333 0.00 0.00 0.00 2.75
3600 4154 7.545965 AGGATTGAAGACATTAACTACAGAACG 59.454 37.037 0.00 0.00 0.00 3.95
3605 4159 9.383519 GATGAAGGATTGAAGACATTAACTACA 57.616 33.333 0.00 0.00 0.00 2.74
3615 4169 9.565213 CTTTTTATGTGATGAAGGATTGAAGAC 57.435 33.333 0.00 0.00 0.00 3.01
3715 4269 3.225104 AGAGAAGTGGCATCAGCAAAAA 58.775 40.909 0.00 0.00 44.61 1.94
3745 4304 3.965379 TTGATGTTTGGCGAGTACCTA 57.035 42.857 0.00 0.00 0.00 3.08
3772 4331 8.651589 TGACTTTCTTCCTGTCTAAGATCTTA 57.348 34.615 14.42 14.42 33.17 2.10
3860 4419 2.435437 ACAAAATGGCAAGAACCAAGCT 59.565 40.909 0.00 0.00 44.65 3.74
4005 4564 7.450014 TCAAATCACAAAAGGGTATTTCTGCTA 59.550 33.333 0.00 0.00 0.00 3.49
4021 4580 9.775854 ATCCACATTGTTAATTTCAAATCACAA 57.224 25.926 9.30 9.30 0.00 3.33
4066 4626 7.819644 TCTTTATCGTTACACTAGTTGCTACA 58.180 34.615 0.13 0.00 0.00 2.74
4106 4666 3.772572 GAGAAAAGGGAGAGCTAGAGGTT 59.227 47.826 0.00 0.00 0.00 3.50
4134 4694 8.871629 AAACAGGTAGATATATCACGATCTCT 57.128 34.615 15.08 0.00 34.28 3.10
4135 4695 8.952278 AGAAACAGGTAGATATATCACGATCTC 58.048 37.037 15.08 2.48 34.28 2.75
4213 4773 3.878778 ACAACCATCTTGATAGCAGGAC 58.121 45.455 0.00 0.00 32.54 3.85
4288 4852 2.704572 AGCACATGAACACTAGCCTTC 58.295 47.619 0.00 0.00 0.00 3.46
4369 4939 5.993748 TTTCGCTTCTCCCCATTATTTTT 57.006 34.783 0.00 0.00 0.00 1.94
4370 4940 5.993748 TTTTCGCTTCTCCCCATTATTTT 57.006 34.783 0.00 0.00 0.00 1.82
4371 4941 7.505585 TGATATTTTCGCTTCTCCCCATTATTT 59.494 33.333 0.00 0.00 0.00 1.40
4377 4947 3.808728 CTGATATTTTCGCTTCTCCCCA 58.191 45.455 0.00 0.00 0.00 4.96
4385 4955 5.984233 TCATTAACGCTGATATTTTCGCT 57.016 34.783 0.00 0.00 0.00 4.93
4565 5135 1.888512 TCAATCAGGAGCCTTTGTTGC 59.111 47.619 0.00 0.00 0.00 4.17
4616 5241 9.027205 AAGTTTGGCTTGATGGTTTTCGTAAGA 62.027 37.037 0.00 0.00 39.75 2.10
4617 5242 4.497473 TTGGCTTGATGGTTTTCGTAAG 57.503 40.909 0.00 0.00 0.00 2.34
4618 5243 4.339814 AGTTTGGCTTGATGGTTTTCGTAA 59.660 37.500 0.00 0.00 0.00 3.18
4619 5244 3.886505 AGTTTGGCTTGATGGTTTTCGTA 59.113 39.130 0.00 0.00 0.00 3.43
4622 5247 3.735746 CGAAGTTTGGCTTGATGGTTTTC 59.264 43.478 0.00 0.00 37.59 2.29
4624 5249 2.955660 TCGAAGTTTGGCTTGATGGTTT 59.044 40.909 0.00 0.00 37.59 3.27
4626 5251 2.154462 CTCGAAGTTTGGCTTGATGGT 58.846 47.619 0.00 0.00 37.59 3.55
4627 5252 2.417933 CTCTCGAAGTTTGGCTTGATGG 59.582 50.000 0.00 0.00 37.59 3.51
4628 5253 3.124297 GTCTCTCGAAGTTTGGCTTGATG 59.876 47.826 0.00 0.00 37.59 3.07
4629 5254 3.007398 AGTCTCTCGAAGTTTGGCTTGAT 59.993 43.478 0.00 0.00 37.59 2.57
4630 5255 2.365617 AGTCTCTCGAAGTTTGGCTTGA 59.634 45.455 0.00 0.00 37.59 3.02
4631 5256 2.760374 AGTCTCTCGAAGTTTGGCTTG 58.240 47.619 0.00 0.00 37.59 4.01
4632 5257 3.134458 CAAGTCTCTCGAAGTTTGGCTT 58.866 45.455 0.00 0.00 40.76 4.35
4633 5258 2.760374 CAAGTCTCTCGAAGTTTGGCT 58.240 47.619 0.00 0.00 0.00 4.75
4634 5259 1.195674 GCAAGTCTCTCGAAGTTTGGC 59.804 52.381 0.00 0.00 0.00 4.52
4635 5260 1.801178 GGCAAGTCTCTCGAAGTTTGG 59.199 52.381 0.00 0.00 0.00 3.28
4636 5261 2.734079 GAGGCAAGTCTCTCGAAGTTTG 59.266 50.000 0.00 0.00 0.00 2.93
4637 5262 2.289133 GGAGGCAAGTCTCTCGAAGTTT 60.289 50.000 1.32 0.00 34.39 2.66
5043 5686 1.248785 TCGAGACCGAGGGAACCAAG 61.249 60.000 0.00 0.00 44.86 3.61
5045 5688 2.437449 TCGAGACCGAGGGAACCA 59.563 61.111 0.00 0.00 44.86 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.