Multiple sequence alignment - TraesCS7B01G256300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G256300 chr7B 100.000 6403 0 0 1 6403 475303867 475310269 0.000000e+00 11825.0
1 TraesCS7B01G256300 chr7B 89.113 248 26 1 1664 1910 475305424 475305671 2.240000e-79 307.0
2 TraesCS7B01G256300 chr7B 89.113 248 26 1 1558 1805 475305530 475305776 2.240000e-79 307.0
3 TraesCS7B01G256300 chrUn 100.000 1522 0 0 1 1522 327450437 327448916 0.000000e+00 2811.0
4 TraesCS7B01G256300 chrUn 94.783 115 5 1 4115 4228 65138953 65138839 1.830000e-40 178.0
5 TraesCS7B01G256300 chrUn 92.241 116 9 0 4113 4228 22763202 22763087 1.430000e-36 165.0
6 TraesCS7B01G256300 chrUn 93.243 74 4 1 6059 6132 110346294 110346366 2.440000e-19 108.0
7 TraesCS7B01G256300 chrUn 100.000 34 0 0 6146 6179 37386202 37386169 5.360000e-06 63.9
8 TraesCS7B01G256300 chr7D 93.356 1445 71 15 4634 6061 452449936 452451372 0.000000e+00 2113.0
9 TraesCS7B01G256300 chr7D 93.894 999 39 7 675 1654 452444694 452445689 0.000000e+00 1487.0
10 TraesCS7B01G256300 chr7D 95.190 894 31 4 3185 4067 452448339 452449231 0.000000e+00 1402.0
11 TraesCS7B01G256300 chr7D 93.300 597 30 6 2242 2830 452447034 452447628 0.000000e+00 872.0
12 TraesCS7B01G256300 chr7D 93.000 600 33 6 1650 2249 452445958 452446548 0.000000e+00 867.0
13 TraesCS7B01G256300 chr7D 94.211 380 15 7 2828 3204 452447855 452448230 2.000000e-159 573.0
14 TraesCS7B01G256300 chr7D 91.392 395 17 11 4227 4617 452449264 452449645 5.690000e-145 525.0
15 TraesCS7B01G256300 chr7D 89.113 248 26 1 1558 1805 452445971 452446217 2.240000e-79 307.0
16 TraesCS7B01G256300 chr7D 97.297 74 2 0 6176 6249 452451390 452451463 6.740000e-25 126.0
17 TraesCS7B01G256300 chr7D 93.243 74 3 1 6059 6132 47416063 47416134 2.440000e-19 108.0
18 TraesCS7B01G256300 chr7D 91.463 82 2 1 6322 6403 452451623 452451699 2.440000e-19 108.0
19 TraesCS7B01G256300 chr7D 93.243 74 3 1 6059 6132 506141368 506141439 2.440000e-19 108.0
20 TraesCS7B01G256300 chr7D 97.436 39 1 0 4073 4111 452449219 452449257 4.140000e-07 67.6
21 TraesCS7B01G256300 chr7A 91.511 966 58 14 4817 5768 544896213 544897168 0.000000e+00 1308.0
22 TraesCS7B01G256300 chr7A 93.875 800 43 5 3318 4116 544894722 544895516 0.000000e+00 1201.0
23 TraesCS7B01G256300 chr7A 89.466 731 44 14 733 1437 544892272 544892995 0.000000e+00 893.0
24 TraesCS7B01G256300 chr7A 87.320 765 57 19 2470 3210 544893909 544894657 0.000000e+00 839.0
25 TraesCS7B01G256300 chr7A 90.909 374 32 2 1771 2143 544893082 544893454 9.580000e-138 501.0
26 TraesCS7B01G256300 chr7A 89.676 339 31 4 2095 2431 544893493 544893829 4.590000e-116 429.0
27 TraesCS7B01G256300 chr7A 86.216 399 40 10 4227 4617 544895515 544895906 9.930000e-113 418.0
28 TraesCS7B01G256300 chr7A 88.841 233 24 2 1468 1700 544892991 544893221 1.050000e-72 285.0
29 TraesCS7B01G256300 chr7A 91.367 139 12 0 1667 1805 544893083 544893221 2.360000e-44 191.0
30 TraesCS7B01G256300 chr7A 85.057 87 3 2 6322 6403 545035963 545036044 5.320000e-11 80.5
31 TraesCS7B01G256300 chr2D 94.783 115 4 1 4114 4228 31733413 31733301 1.830000e-40 178.0
32 TraesCS7B01G256300 chr2D 93.243 74 3 1 6059 6132 204417169 204417098 2.440000e-19 108.0
33 TraesCS7B01G256300 chr2D 100.000 35 0 0 6145 6179 590932894 590932860 1.490000e-06 65.8
34 TraesCS7B01G256300 chr2D 100.000 33 0 0 6147 6179 107917895 107917927 1.930000e-05 62.1
35 TraesCS7B01G256300 chr2D 100.000 29 0 0 3232 3260 70263709 70263737 3.000000e-03 54.7
36 TraesCS7B01G256300 chr2D 100.000 29 0 0 3232 3260 311551739 311551711 3.000000e-03 54.7
37 TraesCS7B01G256300 chr3D 92.437 119 5 3 4114 4228 429605714 429605832 3.970000e-37 167.0
38 TraesCS7B01G256300 chr3D 100.000 34 0 0 6146 6179 11418742 11418775 5.360000e-06 63.9
39 TraesCS7B01G256300 chr5B 91.200 125 3 2 4115 4232 312761818 312761941 5.140000e-36 163.0
40 TraesCS7B01G256300 chr5B 100.000 29 0 0 3232 3260 606015492 606015520 3.000000e-03 54.7
41 TraesCS7B01G256300 chr1D 91.667 120 6 2 4113 4228 35756866 35756985 5.140000e-36 163.0
42 TraesCS7B01G256300 chr1D 87.786 131 10 3 4113 4238 298577112 298576983 1.440000e-31 148.0
43 TraesCS7B01G256300 chr3A 90.833 120 7 3 4109 4228 18825600 18825485 2.390000e-34 158.0
44 TraesCS7B01G256300 chr1B 88.710 124 12 2 4115 4237 368543311 368543433 4.000000e-32 150.0
45 TraesCS7B01G256300 chr1B 93.243 74 3 1 6059 6132 164770451 164770380 2.440000e-19 108.0
46 TraesCS7B01G256300 chr1B 94.737 38 2 0 6146 6183 120403541 120403578 6.930000e-05 60.2
47 TraesCS7B01G256300 chr1B 100.000 31 0 0 3264 3294 599230425 599230395 2.490000e-04 58.4
48 TraesCS7B01G256300 chr5A 93.333 75 4 1 6059 6133 670270015 670269942 6.790000e-20 110.0
49 TraesCS7B01G256300 chr6B 93.243 74 3 1 6059 6132 40887433 40887362 2.440000e-19 108.0
50 TraesCS7B01G256300 chr6B 100.000 29 0 0 3232 3260 34074382 34074354 3.000000e-03 54.7
51 TraesCS7B01G256300 chr6A 93.243 74 3 1 6059 6132 27342894 27342965 2.440000e-19 108.0
52 TraesCS7B01G256300 chr6A 97.436 39 1 0 6145 6183 610912138 610912100 4.140000e-07 67.6
53 TraesCS7B01G256300 chr4A 93.243 74 3 2 6060 6133 549880480 549880551 2.440000e-19 108.0
54 TraesCS7B01G256300 chr4A 92.683 41 3 0 3261 3301 164523107 164523067 6.930000e-05 60.2
55 TraesCS7B01G256300 chr2A 100.000 34 0 0 6146 6179 689711213 689711246 5.360000e-06 63.9
56 TraesCS7B01G256300 chr2A 97.059 34 1 0 3266 3299 726979494 726979527 2.490000e-04 58.4
57 TraesCS7B01G256300 chr2A 100.000 29 0 0 3231 3259 34148185 34148213 3.000000e-03 54.7
58 TraesCS7B01G256300 chr4B 100.000 33 0 0 3265 3297 66089005 66089037 1.930000e-05 62.1
59 TraesCS7B01G256300 chr4B 100.000 28 0 0 6160 6187 12525873 12525900 1.200000e-02 52.8
60 TraesCS7B01G256300 chr5D 96.970 33 1 0 3263 3295 497870286 497870318 8.970000e-04 56.5
61 TraesCS7B01G256300 chr5D 82.609 69 7 3 3232 3295 520783944 520784012 8.970000e-04 56.5
62 TraesCS7B01G256300 chr2B 94.595 37 1 1 3266 3301 199751305 199751341 8.970000e-04 56.5
63 TraesCS7B01G256300 chr1A 96.970 33 1 0 3263 3295 521250813 521250845 8.970000e-04 56.5
64 TraesCS7B01G256300 chr1A 100.000 30 0 0 3231 3260 578016588 578016617 8.970000e-04 56.5
65 TraesCS7B01G256300 chr6D 100.000 29 0 0 3232 3260 20012012 20011984 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G256300 chr7B 475303867 475310269 6402 False 11825.000000 11825 100.000000 1 6403 1 chr7B.!!$F1 6402
1 TraesCS7B01G256300 chrUn 327448916 327450437 1521 True 2811.000000 2811 100.000000 1 1522 1 chrUn.!!$R4 1521
2 TraesCS7B01G256300 chr7D 452444694 452451699 7005 False 767.963636 2113 93.604727 675 6403 11 chr7D.!!$F3 5728
3 TraesCS7B01G256300 chr7A 544892272 544897168 4896 False 673.888889 1308 89.909000 733 5768 9 chr7A.!!$F2 5035

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1578 1624 5.443283 TGGATATGCAGAGCTTTCAGAATT 58.557 37.5 0.0 0.00 0.00 2.17 F
2489 3446 0.673644 CCGGAACAGTACTGCTTGGG 60.674 60.0 22.9 14.81 0.00 4.12 F
3519 4869 0.107263 TGCTGTGACAACTTCCTGCA 60.107 50.0 0.0 0.00 31.52 4.41 F
4127 5478 0.034283 AGACACTACTCCCTCCGTCC 60.034 60.0 0.0 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
3343 4693 1.136147 CTGCGAGTTGAAGCCATGC 59.864 57.895 0.00 0.0 0.00 4.06 R
4111 5462 0.397254 ATGGGACGGAGGGAGTAGTG 60.397 60.000 0.00 0.0 0.00 2.74 R
4866 6515 0.095245 CGGCAACATACAACTGCTCG 59.905 55.000 0.00 0.0 36.32 5.03 R
5931 7596 0.110373 CTCAAACAAGCGGCGGTTAC 60.110 55.000 24.83 0.0 0.00 2.50 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1578 1624 5.443283 TGGATATGCAGAGCTTTCAGAATT 58.557 37.500 0.00 0.00 0.00 2.17
1579 1625 5.530171 TGGATATGCAGAGCTTTCAGAATTC 59.470 40.000 0.00 0.00 0.00 2.17
1596 1642 8.744008 TCAGAATTCTCGTGTAAACTAGAAAG 57.256 34.615 4.57 0.00 32.13 2.62
1623 1669 4.729227 TTAGATGCGTATGTTCAGGTGA 57.271 40.909 0.00 0.00 0.00 4.02
1654 1703 2.912956 AGAACTGCCTTGGGTTCTATGA 59.087 45.455 6.56 0.00 46.72 2.15
1655 1704 3.330701 AGAACTGCCTTGGGTTCTATGAA 59.669 43.478 6.56 0.00 46.72 2.57
1656 1705 3.806949 ACTGCCTTGGGTTCTATGAAA 57.193 42.857 0.00 0.00 0.00 2.69
1660 1709 4.870636 TGCCTTGGGTTCTATGAAATGAT 58.129 39.130 0.00 0.00 0.00 2.45
1748 2069 2.885266 GGGTCTTTGGAAAAGACTGTCC 59.115 50.000 24.46 16.84 44.49 4.02
1765 2086 4.202441 CTGTCCTGGGTTCTATGAAATGG 58.798 47.826 0.00 0.00 0.00 3.16
1792 2113 7.755591 TGATATGCAGAGTTTTCAGAATGTTC 58.244 34.615 0.00 0.00 37.40 3.18
1842 2163 3.623060 CGTATGATCAGGTGGTCTTTTGG 59.377 47.826 0.09 0.00 0.00 3.28
1857 2178 4.640647 GTCTTTTGGAAAGACTGTCTTGGT 59.359 41.667 22.67 9.04 42.44 3.67
1862 2183 5.623956 TGGAAAGACTGTCTTGGTTTCTA 57.376 39.130 22.67 11.94 36.71 2.10
1897 2218 6.072508 TGGTATGCAGAGTTTTCAGAATGTTC 60.073 38.462 0.00 0.00 37.40 3.18
1911 2232 8.462143 TTCAGAATGTTCGTGTAAACTAGATC 57.538 34.615 0.00 0.00 37.40 2.75
1916 2237 5.388111 TGTTCGTGTAAACTAGATCAGTCG 58.612 41.667 0.00 0.00 36.04 4.18
2038 2360 4.513318 GCTATCTGGCAATCTGGAACTTAC 59.487 45.833 0.00 0.00 0.00 2.34
2078 2400 6.770785 TCTTAACTTCTTGTGTACTTGCCATT 59.229 34.615 0.00 0.00 0.00 3.16
2136 2545 6.096695 TCAAACAAGTTGGTGCTAGAAAAAC 58.903 36.000 7.96 0.00 37.85 2.43
2157 2566 6.473397 AACTATTCTCGTGCTTCTTTCAAG 57.527 37.500 0.00 0.00 0.00 3.02
2165 2575 6.807230 TCTCGTGCTTCTTTCAAGTAGTAATC 59.193 38.462 0.00 0.00 0.00 1.75
2192 2602 5.757850 AACTGCAGTTGAAAAACTCCTAG 57.242 39.130 30.66 0.00 36.80 3.02
2228 2638 5.471257 TGTTTTAAGGAGTTTGCAAAACGT 58.529 33.333 14.67 9.89 40.34 3.99
2245 2655 6.254804 GCAAAACGTTGGTTTGATTTACTCTT 59.745 34.615 13.91 0.00 45.35 2.85
2261 3164 9.274206 GATTTACTCTTATTACCCTGTTCCATC 57.726 37.037 0.00 0.00 0.00 3.51
2277 3180 5.707298 TGTTCCATCTTTTGGTTCTCATCTC 59.293 40.000 0.00 0.00 46.52 2.75
2409 3313 3.135348 TCATGTATGGCTTCCCTTCTCAG 59.865 47.826 0.00 0.00 0.00 3.35
2489 3446 0.673644 CCGGAACAGTACTGCTTGGG 60.674 60.000 22.90 14.81 0.00 4.12
2513 3470 6.147656 GGATTTTTAGGAGGCAAAACATTGTG 59.852 38.462 0.00 0.00 0.00 3.33
2534 3491 8.909708 TTGTGTTTAACAAGAGAGTGAAAATG 57.090 30.769 0.00 0.00 43.96 2.32
2626 3583 5.712004 TGCTTATTTTGATGATGTGGTGTG 58.288 37.500 0.00 0.00 0.00 3.82
2682 3639 2.486472 ATCAGCAAGGTTCTGGAGTG 57.514 50.000 0.00 0.00 32.63 3.51
2688 3645 2.421619 CAAGGTTCTGGAGTGAAGAGC 58.578 52.381 0.00 0.00 0.00 4.09
2734 3691 4.717279 TTTGGACCCTAGTTGCTAAGTT 57.283 40.909 0.00 0.00 0.00 2.66
2761 3718 2.295349 CTGACAGCCAAATGTTCTGCTT 59.705 45.455 0.00 0.00 32.25 3.91
2768 3725 5.182001 CAGCCAAATGTTCTGCTTTAGTAGT 59.818 40.000 0.00 0.00 30.08 2.73
2837 4037 5.868454 TGATTGCTGTGCTGTACCATATAT 58.132 37.500 0.00 0.00 0.00 0.86
3065 4275 7.060383 AGACTTGTCCTATATGACTCAATGG 57.940 40.000 9.23 0.00 36.21 3.16
3174 4387 2.946990 GGACCTCACCGTGAAAAAGAAA 59.053 45.455 2.19 0.00 0.00 2.52
3180 4393 7.200455 ACCTCACCGTGAAAAAGAAATTTAAG 58.800 34.615 2.19 0.00 0.00 1.85
3260 4601 4.941263 CCTCCATTCCAAAATACTTGTCGA 59.059 41.667 0.00 0.00 0.00 4.20
3355 4705 6.799512 ACTAATTATCTTGCATGGCTTCAAC 58.200 36.000 0.00 0.00 0.00 3.18
3364 4714 3.793144 GGCTTCAACTCGCAGGCG 61.793 66.667 7.46 7.46 41.35 5.52
3381 4731 2.044551 GAGGGGCCCTTTGAGCAG 60.045 66.667 29.49 0.00 31.76 4.24
3416 4766 6.150976 TGAAACAGAGAGAACTTTTGAAAGCA 59.849 34.615 3.48 0.00 39.63 3.91
3463 4813 3.005539 TCTGGAGGCTGGGCTGAC 61.006 66.667 0.33 0.00 0.00 3.51
3479 4829 3.965888 GACATTGGGTCAAGGAGCT 57.034 52.632 0.00 0.00 46.19 4.09
3519 4869 0.107263 TGCTGTGACAACTTCCTGCA 60.107 50.000 0.00 0.00 31.52 4.41
3613 4963 7.257722 TGTGTGTCAAATTTTCTCTCCTTTTC 58.742 34.615 0.00 0.00 0.00 2.29
3683 5034 3.565307 AGAAGGGCAAGTGTGATTGAAA 58.435 40.909 0.00 0.00 31.55 2.69
3684 5035 3.960102 AGAAGGGCAAGTGTGATTGAAAA 59.040 39.130 0.00 0.00 31.55 2.29
3929 5280 0.551396 ATGGTTTTCCGGGGGAGATC 59.449 55.000 0.00 0.00 44.36 2.75
4064 5415 3.308188 GGAGGTATTGCCCTAACTTGTGT 60.308 47.826 0.00 0.00 38.26 3.72
4106 5457 9.804758 AGTAAGTTATTCTGTAGCATTACTGTC 57.195 33.333 0.00 0.00 32.55 3.51
4111 5462 9.453325 GTTATTCTGTAGCATTACTGTCTAGAC 57.547 37.037 16.32 16.32 32.39 2.59
4116 5467 7.280428 TCTGTAGCATTACTGTCTAGACACTAC 59.720 40.741 26.73 26.73 36.21 2.73
4117 5468 7.110810 TGTAGCATTACTGTCTAGACACTACT 58.889 38.462 29.87 20.71 35.86 2.57
4118 5469 6.687081 AGCATTACTGTCTAGACACTACTC 57.313 41.667 21.74 9.31 36.21 2.59
4119 5470 5.591067 AGCATTACTGTCTAGACACTACTCC 59.409 44.000 21.74 9.14 36.21 3.85
4120 5471 5.221087 GCATTACTGTCTAGACACTACTCCC 60.221 48.000 21.74 4.45 36.21 4.30
4121 5472 5.775813 TTACTGTCTAGACACTACTCCCT 57.224 43.478 21.74 0.22 36.21 4.20
4122 5473 4.224991 ACTGTCTAGACACTACTCCCTC 57.775 50.000 21.74 0.00 36.21 4.30
4123 5474 3.054213 ACTGTCTAGACACTACTCCCTCC 60.054 52.174 21.74 0.00 36.21 4.30
4124 5475 2.093075 TGTCTAGACACTACTCCCTCCG 60.093 54.545 21.74 0.00 36.21 4.63
4125 5476 2.093021 GTCTAGACACTACTCCCTCCGT 60.093 54.545 18.20 0.00 0.00 4.69
4126 5477 2.170187 TCTAGACACTACTCCCTCCGTC 59.830 54.545 0.00 0.00 0.00 4.79
4127 5478 0.034283 AGACACTACTCCCTCCGTCC 60.034 60.000 0.00 0.00 0.00 4.79
4128 5479 1.000107 ACACTACTCCCTCCGTCCC 60.000 63.158 0.00 0.00 0.00 4.46
4129 5480 1.000019 CACTACTCCCTCCGTCCCA 60.000 63.158 0.00 0.00 0.00 4.37
4130 5481 0.397254 CACTACTCCCTCCGTCCCAT 60.397 60.000 0.00 0.00 0.00 4.00
4131 5482 1.133575 CACTACTCCCTCCGTCCCATA 60.134 57.143 0.00 0.00 0.00 2.74
4132 5483 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
4133 5484 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
4134 5485 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
4135 5486 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4136 5487 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4137 5488 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4138 5489 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4139 5490 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4140 5491 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
4141 5492 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4142 5493 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4143 5494 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4144 5495 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4145 5496 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4146 5497 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
4147 5498 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4148 5499 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
4149 5500 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
4150 5501 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
4151 5502 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
4152 5503 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
4153 5504 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
4156 5507 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
4157 5508 4.531659 AAGAGCGTTTTTGACACTACAC 57.468 40.909 0.00 0.00 0.00 2.90
4158 5509 3.793559 AGAGCGTTTTTGACACTACACT 58.206 40.909 0.00 0.00 0.00 3.55
4159 5510 4.940463 AGAGCGTTTTTGACACTACACTA 58.060 39.130 0.00 0.00 0.00 2.74
4160 5511 4.982916 AGAGCGTTTTTGACACTACACTAG 59.017 41.667 0.00 0.00 0.00 2.57
4161 5512 4.690122 AGCGTTTTTGACACTACACTAGT 58.310 39.130 0.00 0.00 40.28 2.57
4190 5541 8.747538 AAAAACGCTCTTATATTATGGGAAGT 57.252 30.769 0.00 0.00 0.00 3.01
4191 5542 7.730364 AAACGCTCTTATATTATGGGAAGTG 57.270 36.000 0.00 0.00 0.00 3.16
4192 5543 6.420913 ACGCTCTTATATTATGGGAAGTGT 57.579 37.500 0.00 0.00 0.00 3.55
4193 5544 7.534723 ACGCTCTTATATTATGGGAAGTGTA 57.465 36.000 0.00 0.00 0.00 2.90
4194 5545 7.959175 ACGCTCTTATATTATGGGAAGTGTAA 58.041 34.615 0.00 0.00 0.00 2.41
4195 5546 8.426489 ACGCTCTTATATTATGGGAAGTGTAAA 58.574 33.333 0.00 0.00 0.00 2.01
4196 5547 9.268268 CGCTCTTATATTATGGGAAGTGTAAAA 57.732 33.333 0.00 0.00 0.00 1.52
4218 5569 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
4219 5570 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4220 5571 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4221 5572 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4222 5573 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
4223 5574 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
4224 5575 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
4225 5576 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4238 5589 5.514484 GGACGGAGGGAGTAGATATGAAGTA 60.514 48.000 0.00 0.00 0.00 2.24
4241 5592 7.011382 ACGGAGGGAGTAGATATGAAGTATTT 58.989 38.462 0.00 0.00 0.00 1.40
4272 5623 5.053978 ACTTATTCCTCCTTATGGCCTTG 57.946 43.478 3.32 0.00 0.00 3.61
4347 5698 8.553153 TCTACACTCCATTTTCCCACATATTTA 58.447 33.333 0.00 0.00 0.00 1.40
4348 5699 7.645058 ACACTCCATTTTCCCACATATTTAG 57.355 36.000 0.00 0.00 0.00 1.85
4349 5700 7.182060 ACACTCCATTTTCCCACATATTTAGT 58.818 34.615 0.00 0.00 0.00 2.24
4350 5701 7.673926 ACACTCCATTTTCCCACATATTTAGTT 59.326 33.333 0.00 0.00 0.00 2.24
4351 5702 8.531146 CACTCCATTTTCCCACATATTTAGTTT 58.469 33.333 0.00 0.00 0.00 2.66
4352 5703 9.762381 ACTCCATTTTCCCACATATTTAGTTTA 57.238 29.630 0.00 0.00 0.00 2.01
4388 5742 4.438744 GGCAATGACAAGTTATTCCTTCCG 60.439 45.833 0.00 0.00 0.00 4.30
4411 5765 2.297315 AGCTTTAAAGTCCAGCAAAGGC 59.703 45.455 16.38 0.00 35.88 4.35
4452 5809 5.422331 CCTTTCTCCCTTAGTGAGTGATACA 59.578 44.000 0.00 0.00 0.00 2.29
4549 5906 9.072294 TCTCGTTCTTTGAAATTGAAAGTTTTC 57.928 29.630 4.95 0.00 37.69 2.29
4610 5969 5.818136 TCATACATGCTTTGCTCCTTTAC 57.182 39.130 0.00 0.00 0.00 2.01
4626 6101 6.148480 GCTCCTTTACTGAGTAATATGCATGG 59.852 42.308 10.16 0.00 32.31 3.66
4646 6295 9.027202 TGCATGGCATATATATGTTTTCTGAAT 57.973 29.630 21.10 4.48 36.11 2.57
4773 6422 3.502920 AGTTTCGACAGCGTTATCTCTG 58.497 45.455 0.00 0.00 38.98 3.35
4781 6430 3.865745 ACAGCGTTATCTCTGGAAAATCG 59.134 43.478 0.00 0.00 34.76 3.34
4799 6448 7.810759 GGAAAATCGGTATTTTTGCTTGAGTTA 59.189 33.333 0.00 0.00 43.69 2.24
4805 6454 9.187455 TCGGTATTTTTGCTTGAGTTATTTTTC 57.813 29.630 0.00 0.00 0.00 2.29
4866 6515 1.273048 TGGCAAATGCTGGTGATTGTC 59.727 47.619 5.25 0.00 41.70 3.18
4958 6607 1.010350 GATGCGCATTGAAGCCTCG 60.010 57.895 26.12 0.00 0.00 4.63
5072 6721 0.741221 GTCTTGGGCCTCTTAGTGCG 60.741 60.000 4.53 0.00 0.00 5.34
5102 6751 3.389329 AGGTGATGATGCGGAATCTTACT 59.611 43.478 0.00 0.00 36.15 2.24
5184 6833 2.314647 GCGGTAGACTTTGCACGCA 61.315 57.895 8.91 0.00 45.57 5.24
5192 6841 2.203337 TTTGCACGCAGGAGGCTT 60.203 55.556 0.00 0.00 41.67 4.35
5403 7052 0.032678 CGATAGCTTGGCGGACTGAT 59.967 55.000 0.00 0.00 0.00 2.90
5416 7065 2.418609 CGGACTGATATGTGTGGCTTGA 60.419 50.000 0.00 0.00 0.00 3.02
5423 7072 0.773644 ATGTGTGGCTTGAGAACCCT 59.226 50.000 0.00 0.00 0.00 4.34
5424 7073 0.179020 TGTGTGGCTTGAGAACCCTG 60.179 55.000 0.00 0.00 0.00 4.45
5425 7074 0.890996 GTGTGGCTTGAGAACCCTGG 60.891 60.000 0.00 0.00 0.00 4.45
5426 7075 1.973812 GTGGCTTGAGAACCCTGGC 60.974 63.158 0.00 0.00 0.00 4.85
5427 7076 2.436109 GGCTTGAGAACCCTGGCA 59.564 61.111 0.00 0.00 0.00 4.92
5428 7077 1.676967 GGCTTGAGAACCCTGGCAG 60.677 63.158 7.75 7.75 0.00 4.85
5429 7078 1.676967 GCTTGAGAACCCTGGCAGG 60.677 63.158 27.04 27.04 34.30 4.85
5445 7094 1.982395 AGGTGGCAGCGCTGTAGTA 60.982 57.895 35.80 18.26 0.00 1.82
5505 7154 4.357918 AGTATGTGCCCCATCTCATAAC 57.642 45.455 0.00 0.00 34.86 1.89
5599 7250 5.049267 GGTACTTATTTGCTTGTTTCGGACA 60.049 40.000 0.00 0.00 36.19 4.02
5638 7291 8.406297 ACAAGTTTGAAAGGTTAACAGAGATTC 58.594 33.333 8.10 4.85 0.00 2.52
5702 7367 1.004277 GTGCAACTGGACTCGAGACG 61.004 60.000 21.68 3.73 33.32 4.18
5703 7368 1.170290 TGCAACTGGACTCGAGACGA 61.170 55.000 21.68 9.66 0.00 4.20
5772 7437 1.194098 CTTTCTGTGAGCAAGCGTGAG 59.806 52.381 2.99 0.00 0.00 3.51
5803 7468 7.981789 TGTTATGTACTGACATCTTGAAGGATC 59.018 37.037 0.00 0.00 43.01 3.36
5804 7469 5.344743 TGTACTGACATCTTGAAGGATCC 57.655 43.478 2.48 2.48 0.00 3.36
5818 7483 0.320771 GGATCCGTGCCGCTATTGAT 60.321 55.000 0.00 0.00 0.00 2.57
5823 7488 1.603802 CCGTGCCGCTATTGATTTCAT 59.396 47.619 0.00 0.00 0.00 2.57
5851 7516 4.802039 CAGCCAATTCATCAAAAATCCGAG 59.198 41.667 0.00 0.00 0.00 4.63
5877 7542 4.028490 GGGGGTCGGACATGTGCA 62.028 66.667 18.05 1.84 0.00 4.57
5884 7549 2.009774 GTCGGACATGTGCAGCTATTT 58.990 47.619 18.05 0.00 0.00 1.40
5903 7568 0.968405 TCAGCCAATCCACCAAAAGC 59.032 50.000 0.00 0.00 0.00 3.51
5910 7575 0.323087 ATCCACCAAAAGCCCGTACC 60.323 55.000 0.00 0.00 0.00 3.34
5916 7581 0.245539 CAAAAGCCCGTACCGAGAGA 59.754 55.000 0.00 0.00 0.00 3.10
5918 7583 0.611340 AAAGCCCGTACCGAGAGAGT 60.611 55.000 0.00 0.00 0.00 3.24
5919 7584 0.611340 AAGCCCGTACCGAGAGAGTT 60.611 55.000 0.00 0.00 0.00 3.01
5920 7585 1.139095 GCCCGTACCGAGAGAGTTG 59.861 63.158 0.00 0.00 0.00 3.16
5921 7586 1.807886 CCCGTACCGAGAGAGTTGG 59.192 63.158 0.00 0.00 35.43 3.77
5922 7587 0.679002 CCCGTACCGAGAGAGTTGGA 60.679 60.000 0.00 0.00 33.09 3.53
5923 7588 0.450983 CCGTACCGAGAGAGTTGGAC 59.549 60.000 0.00 0.00 33.09 4.02
5926 7591 2.161030 GTACCGAGAGAGTTGGACTGT 58.839 52.381 0.00 0.00 33.09 3.55
5927 7592 1.249407 ACCGAGAGAGTTGGACTGTC 58.751 55.000 0.00 0.00 38.65 3.51
5928 7593 1.248486 CCGAGAGAGTTGGACTGTCA 58.752 55.000 10.38 0.00 40.60 3.58
5930 7595 2.035961 CCGAGAGAGTTGGACTGTCAAA 59.964 50.000 10.38 1.10 40.60 2.69
5931 7596 3.312828 CGAGAGAGTTGGACTGTCAAAG 58.687 50.000 10.38 0.00 40.60 2.77
5933 7598 4.023107 CGAGAGAGTTGGACTGTCAAAGTA 60.023 45.833 10.38 0.00 40.60 2.24
5934 7599 5.507482 CGAGAGAGTTGGACTGTCAAAGTAA 60.507 44.000 10.38 0.00 40.60 2.24
5935 7600 5.602628 AGAGAGTTGGACTGTCAAAGTAAC 58.397 41.667 10.38 5.54 40.60 2.50
5936 7601 4.704965 AGAGTTGGACTGTCAAAGTAACC 58.295 43.478 10.38 0.00 40.07 2.85
5937 7602 3.463944 AGTTGGACTGTCAAAGTAACCG 58.536 45.455 10.38 0.00 40.07 4.44
5939 7604 1.154197 GGACTGTCAAAGTAACCGCC 58.846 55.000 10.38 0.00 40.07 6.13
5940 7605 0.788391 GACTGTCAAAGTAACCGCCG 59.212 55.000 2.24 0.00 40.07 6.46
5941 7606 1.226030 ACTGTCAAAGTAACCGCCGC 61.226 55.000 0.00 0.00 37.36 6.53
5943 7608 0.533308 TGTCAAAGTAACCGCCGCTT 60.533 50.000 0.00 0.00 0.00 4.68
5944 7609 0.110373 GTCAAAGTAACCGCCGCTTG 60.110 55.000 0.00 0.00 0.00 4.01
5945 7610 0.533308 TCAAAGTAACCGCCGCTTGT 60.533 50.000 0.00 0.00 0.00 3.16
5946 7611 0.309612 CAAAGTAACCGCCGCTTGTT 59.690 50.000 1.48 1.48 0.00 2.83
5947 7612 1.026584 AAAGTAACCGCCGCTTGTTT 58.973 45.000 1.15 0.00 0.00 2.83
5961 7638 3.267483 GCTTGTTTGAGCGGGAAGTATA 58.733 45.455 0.00 0.00 32.23 1.47
5971 7648 1.478526 GGGAAGTATACCCCGGGAGC 61.479 65.000 26.32 6.85 41.38 4.70
5995 7672 4.149396 CCATGAAAAAGAAAGAAAGCTGCG 59.851 41.667 0.00 0.00 0.00 5.18
6001 7678 1.346068 AGAAAGAAAGCTGCGAGGACT 59.654 47.619 0.00 0.00 0.00 3.85
6024 7701 7.114754 ACTAATCATTCATGTGTCCTGTGATT 58.885 34.615 0.00 0.00 38.14 2.57
6052 7729 1.535462 CCAAGGTTGATGTGTTCCGTC 59.465 52.381 0.00 0.00 0.00 4.79
6061 7738 1.153881 GTGTTCCGTCGCTCCCTAC 60.154 63.158 0.00 0.00 0.00 3.18
6062 7739 2.345760 TGTTCCGTCGCTCCCTACC 61.346 63.158 0.00 0.00 0.00 3.18
6063 7740 2.757099 TTCCGTCGCTCCCTACCC 60.757 66.667 0.00 0.00 0.00 3.69
6064 7741 4.828296 TCCGTCGCTCCCTACCCC 62.828 72.222 0.00 0.00 0.00 4.95
6066 7743 4.835891 CGTCGCTCCCTACCCCCT 62.836 72.222 0.00 0.00 0.00 4.79
6067 7744 2.838693 GTCGCTCCCTACCCCCTC 60.839 72.222 0.00 0.00 0.00 4.30
6068 7745 4.153330 TCGCTCCCTACCCCCTCC 62.153 72.222 0.00 0.00 0.00 4.30
6071 7748 2.123382 CTCCCTACCCCCTCCGTC 60.123 72.222 0.00 0.00 0.00 4.79
6072 7749 3.752816 CTCCCTACCCCCTCCGTCC 62.753 73.684 0.00 0.00 0.00 4.79
6073 7750 4.874533 CCCTACCCCCTCCGTCCC 62.875 77.778 0.00 0.00 0.00 4.46
6074 7751 4.084147 CCTACCCCCTCCGTCCCA 62.084 72.222 0.00 0.00 0.00 4.37
6075 7752 2.285868 CTACCCCCTCCGTCCCAT 59.714 66.667 0.00 0.00 0.00 4.00
6076 7753 1.545211 CTACCCCCTCCGTCCCATA 59.455 63.158 0.00 0.00 0.00 2.74
6077 7754 0.105349 CTACCCCCTCCGTCCCATAA 60.105 60.000 0.00 0.00 0.00 1.90
6078 7755 0.569204 TACCCCCTCCGTCCCATAAT 59.431 55.000 0.00 0.00 0.00 1.28
6080 7757 1.060163 CCCCCTCCGTCCCATAATGT 61.060 60.000 0.00 0.00 0.00 2.71
6081 7758 1.724545 CCCCTCCGTCCCATAATGTA 58.275 55.000 0.00 0.00 0.00 2.29
6082 7759 2.051692 CCCCTCCGTCCCATAATGTAA 58.948 52.381 0.00 0.00 0.00 2.41
6083 7760 2.038557 CCCCTCCGTCCCATAATGTAAG 59.961 54.545 0.00 0.00 0.00 2.34
6084 7761 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
6085 7762 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
6087 7764 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
6088 7765 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
6089 7766 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
6090 7767 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
6091 7768 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
6170 7847 7.626144 AAAAACGTTTTACATTATGGAACGG 57.374 32.000 25.44 12.69 45.11 4.44
6171 7848 6.557291 AAACGTTTTACATTATGGAACGGA 57.443 33.333 23.39 0.00 45.11 4.69
6172 7849 5.789710 ACGTTTTACATTATGGAACGGAG 57.210 39.130 23.39 7.32 45.11 4.63
6173 7850 4.632688 ACGTTTTACATTATGGAACGGAGG 59.367 41.667 23.39 9.24 45.11 4.30
6174 7851 4.034742 CGTTTTACATTATGGAACGGAGGG 59.965 45.833 16.84 0.00 39.33 4.30
6175 7852 5.187687 GTTTTACATTATGGAACGGAGGGA 58.812 41.667 0.00 0.00 0.00 4.20
6176 7853 4.682778 TTACATTATGGAACGGAGGGAG 57.317 45.455 0.00 0.00 0.00 4.30
6177 7854 2.478292 ACATTATGGAACGGAGGGAGT 58.522 47.619 0.00 0.00 0.00 3.85
6212 7889 0.760567 TGGGCGTGCTAGGATCATCT 60.761 55.000 0.00 0.00 0.00 2.90
6249 7926 2.870411 CAATCTCGCTCTTCATCATGCA 59.130 45.455 0.00 0.00 0.00 3.96
6250 7927 2.220479 TCTCGCTCTTCATCATGCAG 57.780 50.000 0.00 0.00 0.00 4.41
6251 7928 0.582482 CTCGCTCTTCATCATGCAGC 59.418 55.000 0.00 0.00 0.00 5.25
6253 7930 1.015109 CGCTCTTCATCATGCAGCTT 58.985 50.000 0.00 0.00 0.00 3.74
6256 7933 3.672511 CGCTCTTCATCATGCAGCTTTTT 60.673 43.478 0.00 0.00 0.00 1.94
6274 7951 1.705873 TTTTGTTGGCCCATAACCGT 58.294 45.000 0.00 0.00 0.00 4.83
6275 7952 1.249407 TTTGTTGGCCCATAACCGTC 58.751 50.000 0.00 0.00 0.00 4.79
6276 7953 0.956410 TTGTTGGCCCATAACCGTCG 60.956 55.000 0.00 0.00 0.00 5.12
6277 7954 1.078988 GTTGGCCCATAACCGTCGA 60.079 57.895 0.00 0.00 0.00 4.20
6278 7955 1.087771 GTTGGCCCATAACCGTCGAG 61.088 60.000 0.00 0.00 0.00 4.04
6280 7957 1.259142 TGGCCCATAACCGTCGAGAA 61.259 55.000 0.00 0.00 0.00 2.87
6281 7958 0.529992 GGCCCATAACCGTCGAGAAG 60.530 60.000 0.00 0.00 0.00 2.85
6282 7959 1.152383 GCCCATAACCGTCGAGAAGC 61.152 60.000 0.00 0.00 0.00 3.86
6283 7960 0.174845 CCCATAACCGTCGAGAAGCA 59.825 55.000 0.00 0.00 0.00 3.91
6285 7962 0.924090 CATAACCGTCGAGAAGCAGC 59.076 55.000 0.00 0.00 0.00 5.25
6286 7963 0.179108 ATAACCGTCGAGAAGCAGCC 60.179 55.000 0.00 0.00 0.00 4.85
6287 7964 2.221906 TAACCGTCGAGAAGCAGCCC 62.222 60.000 0.00 0.00 0.00 5.19
6288 7965 4.069232 CCGTCGAGAAGCAGCCCA 62.069 66.667 0.00 0.00 0.00 5.36
6289 7966 2.185350 CGTCGAGAAGCAGCCCAT 59.815 61.111 0.00 0.00 0.00 4.00
6291 7968 1.219124 GTCGAGAAGCAGCCCATGA 59.781 57.895 0.00 0.00 0.00 3.07
6292 7969 0.179062 GTCGAGAAGCAGCCCATGAT 60.179 55.000 0.00 0.00 0.00 2.45
6293 7970 0.543277 TCGAGAAGCAGCCCATGATT 59.457 50.000 0.00 0.00 41.14 2.57
6298 7975 1.315690 AAGCAGCCCATGATTCATCG 58.684 50.000 0.00 0.00 29.50 3.84
6299 7976 0.471191 AGCAGCCCATGATTCATCGA 59.529 50.000 0.00 0.00 0.00 3.59
6301 7978 1.541889 GCAGCCCATGATTCATCGAGA 60.542 52.381 0.00 0.00 0.00 4.04
6302 7979 2.842457 CAGCCCATGATTCATCGAGAA 58.158 47.619 0.00 0.00 41.28 2.87
6303 7980 3.208594 CAGCCCATGATTCATCGAGAAA 58.791 45.455 0.00 0.00 40.22 2.52
6304 7981 3.003068 CAGCCCATGATTCATCGAGAAAC 59.997 47.826 0.00 0.00 40.22 2.78
6305 7982 2.945008 GCCCATGATTCATCGAGAAACA 59.055 45.455 0.00 8.97 42.26 2.83
6307 7984 4.731773 GCCCATGATTCATCGAGAAACAAC 60.732 45.833 10.08 1.32 41.53 3.32
6308 7985 4.395854 CCCATGATTCATCGAGAAACAACA 59.604 41.667 10.08 6.01 41.53 3.33
6309 7986 5.106197 CCCATGATTCATCGAGAAACAACAA 60.106 40.000 10.08 0.00 41.53 2.83
6310 7987 6.025896 CCATGATTCATCGAGAAACAACAAG 58.974 40.000 10.08 4.02 41.53 3.16
6311 7988 5.034554 TGATTCATCGAGAAACAACAAGC 57.965 39.130 0.00 0.00 40.22 4.01
6313 7990 2.844946 TCATCGAGAAACAACAAGCCA 58.155 42.857 0.00 0.00 0.00 4.75
6314 7991 2.548057 TCATCGAGAAACAACAAGCCAC 59.452 45.455 0.00 0.00 0.00 5.01
6317 7994 1.670811 CGAGAAACAACAAGCCACACT 59.329 47.619 0.00 0.00 0.00 3.55
6318 7995 2.286418 CGAGAAACAACAAGCCACACTC 60.286 50.000 0.00 0.00 0.00 3.51
6319 7996 2.682856 GAGAAACAACAAGCCACACTCA 59.317 45.455 0.00 0.00 0.00 3.41
6367 8131 0.182775 ACAACAACCTCCACTCCACC 59.817 55.000 0.00 0.00 0.00 4.61
6375 8139 2.358247 CCACTCCACCGGGTTTCG 60.358 66.667 6.32 0.00 38.88 3.46
6378 8142 2.135581 ACTCCACCGGGTTTCGTCA 61.136 57.895 6.32 0.00 37.11 4.35
6379 8143 1.374252 CTCCACCGGGTTTCGTCAG 60.374 63.158 6.32 0.00 37.11 3.51
6380 8144 1.812686 CTCCACCGGGTTTCGTCAGA 61.813 60.000 6.32 0.00 37.11 3.27
6381 8145 1.189524 TCCACCGGGTTTCGTCAGAT 61.190 55.000 6.32 0.00 37.11 2.90
6382 8146 1.019278 CCACCGGGTTTCGTCAGATG 61.019 60.000 6.32 0.00 37.11 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1550 1596 3.760580 AAGCTCTGCATATCCAGTACC 57.239 47.619 0.00 0.00 34.47 3.34
1578 1624 5.449107 ACAGCTTTCTAGTTTACACGAGA 57.551 39.130 0.00 0.00 33.20 4.04
1579 1625 6.526566 AAACAGCTTTCTAGTTTACACGAG 57.473 37.500 0.00 0.00 34.03 4.18
1596 1642 5.216566 TGAACATACGCATCTAAAACAGC 57.783 39.130 0.00 0.00 0.00 4.40
1623 1669 4.039609 CCCAAGGCAGTTCTTTGAAAAGAT 59.960 41.667 6.33 0.00 43.92 2.40
1635 1681 3.806949 TTCATAGAACCCAAGGCAGTT 57.193 42.857 0.00 0.00 0.00 3.16
1654 1703 8.665643 TGAAAACTCTGCATTTCAAATCATTT 57.334 26.923 10.08 0.00 41.26 2.32
1655 1704 8.145767 TCTGAAAACTCTGCATTTCAAATCATT 58.854 29.630 12.81 0.00 42.96 2.57
1656 1705 7.663827 TCTGAAAACTCTGCATTTCAAATCAT 58.336 30.769 12.81 0.00 42.96 2.45
1660 1709 7.267128 ACATTCTGAAAACTCTGCATTTCAAA 58.733 30.769 12.81 10.57 42.96 2.69
1748 2069 7.522725 GCATATCAACCATTTCATAGAACCCAG 60.523 40.741 0.00 0.00 0.00 4.45
1765 2086 7.533426 ACATTCTGAAAACTCTGCATATCAAC 58.467 34.615 0.00 0.00 0.00 3.18
1792 2113 8.025243 TCTAAAATGGCTTTCTAGTTTACACG 57.975 34.615 0.00 0.00 0.00 4.49
1842 2163 7.730364 TTCATAGAAACCAAGACAGTCTTTC 57.270 36.000 13.53 8.67 33.78 2.62
1857 2178 8.750515 TCTGCATACCAATCATTTCATAGAAA 57.249 30.769 0.00 0.00 0.00 2.52
1862 2183 7.414222 AAACTCTGCATACCAATCATTTCAT 57.586 32.000 0.00 0.00 0.00 2.57
1897 2218 3.754955 TGCGACTGATCTAGTTTACACG 58.245 45.455 0.00 0.00 40.53 4.49
2038 2360 4.810790 AGTTAAGAGACTTCCATGACACG 58.189 43.478 0.00 0.00 0.00 4.49
2136 2545 6.809196 ACTACTTGAAAGAAGCACGAGAATAG 59.191 38.462 0.00 0.00 0.00 1.73
2157 2566 3.000727 ACTGCAGTTTGCCGATTACTAC 58.999 45.455 15.25 0.00 44.23 2.73
2165 2575 1.919918 TTTTCAACTGCAGTTTGCCG 58.080 45.000 29.23 17.79 44.23 5.69
2192 2602 4.218417 TCCTTAAAACATGCAAAGAGGCTC 59.782 41.667 6.34 6.34 34.04 4.70
2228 2638 9.238368 CAGGGTAATAAGAGTAAATCAAACCAA 57.762 33.333 0.00 0.00 0.00 3.67
2261 3164 5.415077 AGAGCAATGAGATGAGAACCAAAAG 59.585 40.000 0.00 0.00 0.00 2.27
2277 3180 4.074970 ACCAAACCTCAAGTAGAGCAATG 58.925 43.478 0.00 0.00 43.31 2.82
2489 3446 6.705825 ACACAATGTTTTGCCTCCTAAAAATC 59.294 34.615 0.00 0.00 36.22 2.17
2523 3480 6.533730 TGTGACCTGATAACATTTTCACTCT 58.466 36.000 0.00 0.00 33.73 3.24
2534 3491 7.144722 TGTGAAATCAATGTGACCTGATAAC 57.855 36.000 0.00 0.35 31.97 1.89
2621 3578 2.413310 AATACGAACCCCATCACACC 57.587 50.000 0.00 0.00 0.00 4.16
2626 3583 4.173256 CAAGCAAAAATACGAACCCCATC 58.827 43.478 0.00 0.00 0.00 3.51
2688 3645 4.011023 AGGTATACCGCAGCTATCACTAG 58.989 47.826 16.31 0.00 42.08 2.57
2726 3683 3.369471 GGCTGTCAGTCCATAACTTAGCA 60.369 47.826 0.93 0.00 38.05 3.49
2734 3691 3.719268 ACATTTGGCTGTCAGTCCATA 57.281 42.857 14.33 11.14 31.54 2.74
2761 3718 7.255520 GCTAGTTGAAGCTATAGCCACTACTAA 60.256 40.741 25.83 17.40 43.38 2.24
2837 4037 7.182817 AGCATGTTCTATTGGTAGAAGTACA 57.817 36.000 0.00 0.00 45.16 2.90
2925 4126 7.123547 GGAGGATATTGAGATCTTTCGATAGGT 59.876 40.741 0.00 0.00 29.29 3.08
2932 4133 7.512992 TGGAAAGGAGGATATTGAGATCTTTC 58.487 38.462 0.00 0.00 38.51 2.62
3149 4360 2.005370 TTTCACGGTGAGGTCCTAGT 57.995 50.000 11.14 0.00 0.00 2.57
3180 4393 4.389374 TGCTGATACTTATAAGCAAGGGC 58.611 43.478 12.54 11.65 45.01 5.19
3222 4563 8.344939 TGGAATGGAGGGAGTACTTTATTATT 57.655 34.615 0.00 0.00 0.00 1.40
3260 4601 4.082787 CCGTTCCAAAATACTTGTCATGCT 60.083 41.667 0.00 0.00 0.00 3.79
3343 4693 1.136147 CTGCGAGTTGAAGCCATGC 59.864 57.895 0.00 0.00 0.00 4.06
3364 4714 1.562672 TACTGCTCAAAGGGCCCCTC 61.563 60.000 21.43 1.53 30.89 4.30
3381 4731 8.371770 AGTTCTCTCTGTTTCAGATTTTGTAC 57.628 34.615 0.00 0.00 39.92 2.90
3416 4766 7.577303 ACAACTGGGATATATTCAACATCTGT 58.423 34.615 0.00 0.00 0.00 3.41
3463 4813 2.205022 TTGAGCTCCTTGACCCAATG 57.795 50.000 12.15 0.00 0.00 2.82
3479 4829 4.883585 GCAAATGTAGACATCCTCCATTGA 59.116 41.667 6.66 0.00 35.10 2.57
3519 4869 5.656416 TCACAGTTTTCAGGTCCAAAATCTT 59.344 36.000 0.00 0.00 0.00 2.40
3613 4963 6.901081 AAATAGTTCTTTCCAGTTTCCAGG 57.099 37.500 0.00 0.00 0.00 4.45
3866 5217 3.450578 CAAATTGCTGCACACAAAGTCT 58.549 40.909 0.00 0.00 0.00 3.24
3929 5280 2.276472 CTGAGGAGACAGCTTTCTCG 57.724 55.000 20.74 6.05 42.74 4.04
4106 5457 2.563702 GACGGAGGGAGTAGTGTCTAG 58.436 57.143 0.00 0.00 0.00 2.43
4111 5462 0.397254 ATGGGACGGAGGGAGTAGTG 60.397 60.000 0.00 0.00 0.00 2.74
4116 5467 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4117 5468 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
4118 5469 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
4119 5470 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
4120 5471 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
4121 5472 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
4122 5473 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4123 5474 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
4124 5475 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
4125 5476 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
4126 5477 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
4127 5478 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
4130 5481 9.642327 TGTAGTGTCAAAAACGCTCTTATATTA 57.358 29.630 0.00 0.00 45.69 0.98
4131 5482 8.440833 GTGTAGTGTCAAAAACGCTCTTATATT 58.559 33.333 0.00 0.00 45.69 1.28
4132 5483 7.817962 AGTGTAGTGTCAAAAACGCTCTTATAT 59.182 33.333 0.00 0.00 45.69 0.86
4133 5484 7.149973 AGTGTAGTGTCAAAAACGCTCTTATA 58.850 34.615 0.00 0.00 45.69 0.98
4134 5485 5.989777 AGTGTAGTGTCAAAAACGCTCTTAT 59.010 36.000 0.00 0.00 45.69 1.73
4135 5486 5.353938 AGTGTAGTGTCAAAAACGCTCTTA 58.646 37.500 0.00 0.00 45.69 2.10
4136 5487 4.189231 AGTGTAGTGTCAAAAACGCTCTT 58.811 39.130 0.00 0.00 45.69 2.85
4137 5488 3.793559 AGTGTAGTGTCAAAAACGCTCT 58.206 40.909 0.00 0.00 45.69 4.09
4138 5489 4.743644 ACTAGTGTAGTGTCAAAAACGCTC 59.256 41.667 0.00 0.00 45.69 5.03
4165 5516 8.621286 CACTTCCCATAATATAAGAGCGTTTTT 58.379 33.333 0.00 0.00 0.00 1.94
4166 5517 7.773690 ACACTTCCCATAATATAAGAGCGTTTT 59.226 33.333 0.00 0.00 0.00 2.43
4167 5518 7.280356 ACACTTCCCATAATATAAGAGCGTTT 58.720 34.615 0.00 0.00 0.00 3.60
4168 5519 6.827727 ACACTTCCCATAATATAAGAGCGTT 58.172 36.000 0.00 0.00 0.00 4.84
4169 5520 6.420913 ACACTTCCCATAATATAAGAGCGT 57.579 37.500 0.00 0.00 0.00 5.07
4170 5521 8.827177 TTTACACTTCCCATAATATAAGAGCG 57.173 34.615 0.00 0.00 0.00 5.03
4194 5545 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4195 5546 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
4196 5547 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4197 5548 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4198 5549 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4199 5550 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
4200 5551 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4201 5552 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
4202 5553 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4203 5554 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4204 5555 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4205 5556 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4206 5557 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4207 5558 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
4208 5559 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
4209 5560 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
4210 5561 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
4211 5562 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
4212 5563 1.526315 TATCTACTCCCTCCGTCCCA 58.474 55.000 0.00 0.00 0.00 4.37
4213 5564 2.041350 TCATATCTACTCCCTCCGTCCC 59.959 54.545 0.00 0.00 0.00 4.46
4214 5565 3.436577 TCATATCTACTCCCTCCGTCC 57.563 52.381 0.00 0.00 0.00 4.79
4215 5566 4.400120 ACTTCATATCTACTCCCTCCGTC 58.600 47.826 0.00 0.00 0.00 4.79
4216 5567 4.456662 ACTTCATATCTACTCCCTCCGT 57.543 45.455 0.00 0.00 0.00 4.69
4217 5568 7.469537 AAATACTTCATATCTACTCCCTCCG 57.530 40.000 0.00 0.00 0.00 4.63
4272 5623 5.995897 ACACAGATAACTAAACAGGAACCAC 59.004 40.000 0.00 0.00 0.00 4.16
4313 5664 5.294552 GGAAAATGGAGTGTAGAGTGCATAC 59.705 44.000 2.01 0.00 32.69 2.39
4326 5677 8.664669 AAACTAAATATGTGGGAAAATGGAGT 57.335 30.769 0.00 0.00 0.00 3.85
4360 5711 7.008021 AGGAATAACTTGTCATTGCCAAAAT 57.992 32.000 0.00 0.00 0.00 1.82
4379 5730 5.183969 GGACTTTAAAGCTACGGAAGGAAT 58.816 41.667 15.24 0.00 0.00 3.01
4388 5742 4.616143 GCCTTTGCTGGACTTTAAAGCTAC 60.616 45.833 15.24 6.32 37.82 3.58
4411 5765 9.167311 GGGAGAAAGGCATATGTTATGTATAAG 57.833 37.037 4.29 0.00 0.00 1.73
4549 5906 2.886523 TCAAAGGCATGACAAGAACAGG 59.113 45.455 0.00 0.00 0.00 4.00
4646 6295 5.913137 CATAAAAGGGATGCACTGGTTTA 57.087 39.130 0.00 0.00 0.00 2.01
4757 6406 2.561733 TTCCAGAGATAACGCTGTCG 57.438 50.000 3.23 0.00 41.21 4.35
4773 6422 6.156519 ACTCAAGCAAAAATACCGATTTTCC 58.843 36.000 0.00 0.00 43.10 3.13
4805 6454 9.414295 TCAATCATGCAGAAATGTTTAAGAAAG 57.586 29.630 0.00 0.00 0.00 2.62
4866 6515 0.095245 CGGCAACATACAACTGCTCG 59.905 55.000 0.00 0.00 36.32 5.03
4958 6607 3.876341 TCCATCGTAAACATAACCACCC 58.124 45.455 0.00 0.00 0.00 4.61
5015 6664 2.141011 CTTCCATGTGCCAGTCCCCA 62.141 60.000 0.00 0.00 0.00 4.96
5072 6721 1.070445 CATCATCACCTCCGGCTCC 59.930 63.158 0.00 0.00 0.00 4.70
5078 6727 1.071385 AGATTCCGCATCATCACCTCC 59.929 52.381 0.00 0.00 33.75 4.30
5192 6841 1.421268 ACAGGGTCATTGTGCTCTTGA 59.579 47.619 0.00 0.00 0.00 3.02
5204 6853 4.007644 CAGCAGGCGACAGGGTCA 62.008 66.667 0.00 0.00 32.09 4.02
5336 6985 3.924918 TCTGCGGATATACTTCTCTGC 57.075 47.619 0.00 0.00 42.82 4.26
5416 7065 3.971702 GCCACCTGCCAGGGTTCT 61.972 66.667 16.70 0.00 40.58 3.01
5426 7075 2.225791 TACTACAGCGCTGCCACCTG 62.226 60.000 36.28 20.72 0.00 4.00
5427 7076 1.541310 TTACTACAGCGCTGCCACCT 61.541 55.000 36.28 19.54 0.00 4.00
5428 7077 0.462047 ATTACTACAGCGCTGCCACC 60.462 55.000 36.28 0.00 0.00 4.61
5429 7078 0.931005 GATTACTACAGCGCTGCCAC 59.069 55.000 36.28 16.69 0.00 5.01
5435 7084 4.497507 GGAAAAATGGGATTACTACAGCGC 60.498 45.833 0.00 0.00 0.00 5.92
5445 7094 4.835056 GCTAGGCTATGGAAAAATGGGATT 59.165 41.667 0.00 0.00 0.00 3.01
5505 7154 3.480470 ACTCAACAACAACCATCTCAGG 58.520 45.455 0.00 0.00 0.00 3.86
5586 7237 1.461127 CTAGCAGTGTCCGAAACAAGC 59.539 52.381 0.00 7.87 40.31 4.01
5599 7250 5.023533 TCAAACTTGTGAAGTCTAGCAGT 57.976 39.130 0.00 0.00 41.91 4.40
5638 7291 9.775854 ACAGATATCATAAAAGAAGATCACTGG 57.224 33.333 5.32 0.00 33.52 4.00
5702 7367 0.961753 CTTTCCAAACCTGGTGGCTC 59.038 55.000 0.00 0.00 43.97 4.70
5703 7368 1.115326 GCTTTCCAAACCTGGTGGCT 61.115 55.000 0.00 0.00 43.97 4.75
5772 7437 7.492524 TCAAGATGTCAGTACATAACATCCTC 58.507 38.462 21.77 8.16 46.49 3.71
5818 7483 1.969208 TGAATTGGCTGGTGCATGAAA 59.031 42.857 0.00 0.00 41.91 2.69
5823 7488 1.630223 TTGATGAATTGGCTGGTGCA 58.370 45.000 0.00 0.00 41.91 4.57
5860 7525 3.976701 CTGCACATGTCCGACCCCC 62.977 68.421 0.00 0.00 0.00 5.40
5884 7549 0.968405 GCTTTTGGTGGATTGGCTGA 59.032 50.000 0.00 0.00 0.00 4.26
5893 7558 3.676216 GGTACGGGCTTTTGGTGG 58.324 61.111 0.00 0.00 0.00 4.61
5910 7575 3.243569 ACTTTGACAGTCCAACTCTCTCG 60.244 47.826 0.00 0.00 0.00 4.04
5916 7581 3.463944 CGGTTACTTTGACAGTCCAACT 58.536 45.455 0.00 0.00 36.88 3.16
5918 7583 2.215196 GCGGTTACTTTGACAGTCCAA 58.785 47.619 0.00 0.00 36.88 3.53
5919 7584 1.541670 GGCGGTTACTTTGACAGTCCA 60.542 52.381 0.00 0.00 36.88 4.02
5920 7585 1.154197 GGCGGTTACTTTGACAGTCC 58.846 55.000 0.00 0.00 36.88 3.85
5921 7586 0.788391 CGGCGGTTACTTTGACAGTC 59.212 55.000 0.00 0.00 36.88 3.51
5922 7587 1.226030 GCGGCGGTTACTTTGACAGT 61.226 55.000 9.78 0.00 39.87 3.55
5923 7588 0.949105 AGCGGCGGTTACTTTGACAG 60.949 55.000 5.44 0.00 0.00 3.51
5926 7591 0.533308 ACAAGCGGCGGTTACTTTGA 60.533 50.000 24.83 0.00 0.00 2.69
5927 7592 0.309612 AACAAGCGGCGGTTACTTTG 59.690 50.000 24.83 14.90 0.00 2.77
5928 7593 1.026584 AAACAAGCGGCGGTTACTTT 58.973 45.000 24.83 19.77 0.00 2.66
5930 7595 0.533308 TCAAACAAGCGGCGGTTACT 60.533 50.000 24.83 11.40 0.00 2.24
5931 7596 0.110373 CTCAAACAAGCGGCGGTTAC 60.110 55.000 24.83 0.00 0.00 2.50
5933 7598 3.030652 CTCAAACAAGCGGCGGTT 58.969 55.556 19.75 19.75 0.00 4.44
5934 7599 3.660111 GCTCAAACAAGCGGCGGT 61.660 61.111 5.44 5.44 31.56 5.68
5940 7605 1.519408 TACTTCCCGCTCAAACAAGC 58.481 50.000 0.00 0.00 38.97 4.01
5941 7606 3.621715 GGTATACTTCCCGCTCAAACAAG 59.378 47.826 2.25 0.00 0.00 3.16
5943 7608 2.093341 GGGTATACTTCCCGCTCAAACA 60.093 50.000 2.25 0.00 35.27 2.83
5944 7609 2.558378 GGGTATACTTCCCGCTCAAAC 58.442 52.381 2.25 0.00 35.27 2.93
5945 7610 1.487558 GGGGTATACTTCCCGCTCAAA 59.512 52.381 2.25 0.00 45.46 2.69
5946 7611 1.125633 GGGGTATACTTCCCGCTCAA 58.874 55.000 2.25 0.00 45.46 3.02
5947 7612 2.830475 GGGGTATACTTCCCGCTCA 58.170 57.895 2.25 0.00 45.46 4.26
5954 7631 1.478526 GGGCTCCCGGGGTATACTTC 61.479 65.000 23.50 1.84 0.00 3.01
5971 7648 4.450080 GCAGCTTTCTTTCTTTTTCATGGG 59.550 41.667 0.00 0.00 0.00 4.00
6001 7678 7.111466 TCAATCACAGGACACATGAATGATTA 58.889 34.615 0.00 0.00 34.43 1.75
6024 7701 2.228582 CACATCAACCTTGGCGATTTCA 59.771 45.455 0.00 0.00 0.00 2.69
6061 7738 1.060163 ACATTATGGGACGGAGGGGG 61.060 60.000 0.00 0.00 0.00 5.40
6062 7739 1.724545 TACATTATGGGACGGAGGGG 58.275 55.000 0.00 0.00 0.00 4.79
6063 7740 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
6064 7741 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
6065 7742 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
6066 7743 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
6146 7823 7.424001 TCCGTTCCATAATGTAAAACGTTTTT 58.576 30.769 29.42 15.16 40.65 1.94
6147 7824 6.968250 TCCGTTCCATAATGTAAAACGTTTT 58.032 32.000 27.65 27.65 40.65 2.43
6148 7825 6.348704 CCTCCGTTCCATAATGTAAAACGTTT 60.349 38.462 7.96 7.96 40.65 3.60
6149 7826 5.122711 CCTCCGTTCCATAATGTAAAACGTT 59.877 40.000 0.00 0.00 40.65 3.99
6150 7827 4.632688 CCTCCGTTCCATAATGTAAAACGT 59.367 41.667 5.39 0.00 40.65 3.99
6151 7828 4.034742 CCCTCCGTTCCATAATGTAAAACG 59.965 45.833 0.00 0.00 41.60 3.60
6152 7829 5.187687 TCCCTCCGTTCCATAATGTAAAAC 58.812 41.667 0.00 0.00 0.00 2.43
6153 7830 5.045432 ACTCCCTCCGTTCCATAATGTAAAA 60.045 40.000 0.00 0.00 0.00 1.52
6154 7831 4.472108 ACTCCCTCCGTTCCATAATGTAAA 59.528 41.667 0.00 0.00 0.00 2.01
6155 7832 4.035112 ACTCCCTCCGTTCCATAATGTAA 58.965 43.478 0.00 0.00 0.00 2.41
6156 7833 3.649843 ACTCCCTCCGTTCCATAATGTA 58.350 45.455 0.00 0.00 0.00 2.29
6157 7834 2.478292 ACTCCCTCCGTTCCATAATGT 58.522 47.619 0.00 0.00 0.00 2.71
6158 7835 4.682778 TTACTCCCTCCGTTCCATAATG 57.317 45.455 0.00 0.00 0.00 1.90
6159 7836 6.520231 GCTTATTACTCCCTCCGTTCCATAAT 60.520 42.308 0.00 0.00 0.00 1.28
6160 7837 5.221581 GCTTATTACTCCCTCCGTTCCATAA 60.222 44.000 0.00 0.00 0.00 1.90
6161 7838 4.282703 GCTTATTACTCCCTCCGTTCCATA 59.717 45.833 0.00 0.00 0.00 2.74
6162 7839 3.071167 GCTTATTACTCCCTCCGTTCCAT 59.929 47.826 0.00 0.00 0.00 3.41
6163 7840 2.433239 GCTTATTACTCCCTCCGTTCCA 59.567 50.000 0.00 0.00 0.00 3.53
6164 7841 2.433239 TGCTTATTACTCCCTCCGTTCC 59.567 50.000 0.00 0.00 0.00 3.62
6165 7842 3.814005 TGCTTATTACTCCCTCCGTTC 57.186 47.619 0.00 0.00 0.00 3.95
6166 7843 3.681874 GCTTGCTTATTACTCCCTCCGTT 60.682 47.826 0.00 0.00 0.00 4.44
6167 7844 2.158943 GCTTGCTTATTACTCCCTCCGT 60.159 50.000 0.00 0.00 0.00 4.69
6168 7845 2.103263 AGCTTGCTTATTACTCCCTCCG 59.897 50.000 0.00 0.00 0.00 4.63
6169 7846 3.847671 AGCTTGCTTATTACTCCCTCC 57.152 47.619 0.00 0.00 0.00 4.30
6170 7847 4.944317 ACAAAGCTTGCTTATTACTCCCTC 59.056 41.667 8.36 0.00 0.00 4.30
6171 7848 4.702131 CACAAAGCTTGCTTATTACTCCCT 59.298 41.667 8.36 0.00 0.00 4.20
6172 7849 4.142381 CCACAAAGCTTGCTTATTACTCCC 60.142 45.833 8.36 0.00 0.00 4.30
6173 7850 4.142381 CCCACAAAGCTTGCTTATTACTCC 60.142 45.833 8.36 0.00 0.00 3.85
6174 7851 4.675408 GCCCACAAAGCTTGCTTATTACTC 60.675 45.833 8.36 0.00 0.00 2.59
6175 7852 3.193479 GCCCACAAAGCTTGCTTATTACT 59.807 43.478 8.36 0.00 0.00 2.24
6176 7853 3.511699 GCCCACAAAGCTTGCTTATTAC 58.488 45.455 8.36 0.00 0.00 1.89
6177 7854 2.163412 CGCCCACAAAGCTTGCTTATTA 59.837 45.455 8.36 0.00 0.00 0.98
6212 7889 4.510340 CGAGATTGACAAGATGCATGATCA 59.490 41.667 2.46 0.00 32.86 2.92
6256 7933 1.249407 GACGGTTATGGGCCAACAAA 58.751 50.000 11.89 2.26 0.00 2.83
6257 7934 0.956410 CGACGGTTATGGGCCAACAA 60.956 55.000 11.89 4.85 0.00 2.83
6258 7935 1.376166 CGACGGTTATGGGCCAACA 60.376 57.895 11.89 0.00 0.00 3.33
6260 7937 1.219664 CTCGACGGTTATGGGCCAA 59.780 57.895 11.89 0.00 0.00 4.52
6262 7939 0.529992 CTTCTCGACGGTTATGGGCC 60.530 60.000 0.00 0.00 0.00 5.80
6263 7940 1.152383 GCTTCTCGACGGTTATGGGC 61.152 60.000 0.00 0.00 0.00 5.36
6264 7941 0.174845 TGCTTCTCGACGGTTATGGG 59.825 55.000 0.00 0.00 0.00 4.00
6265 7942 1.560923 CTGCTTCTCGACGGTTATGG 58.439 55.000 0.00 0.00 0.00 2.74
6266 7943 0.924090 GCTGCTTCTCGACGGTTATG 59.076 55.000 0.00 0.00 0.00 1.90
6267 7944 0.179108 GGCTGCTTCTCGACGGTTAT 60.179 55.000 0.00 0.00 0.00 1.89
6269 7946 2.048127 GGCTGCTTCTCGACGGTT 60.048 61.111 0.00 0.00 0.00 4.44
6270 7947 4.070552 GGGCTGCTTCTCGACGGT 62.071 66.667 0.00 0.00 0.00 4.83
6271 7948 3.376935 ATGGGCTGCTTCTCGACGG 62.377 63.158 0.00 0.00 0.00 4.79
6274 7951 0.543277 AATCATGGGCTGCTTCTCGA 59.457 50.000 0.00 0.00 0.00 4.04
6275 7952 0.942962 GAATCATGGGCTGCTTCTCG 59.057 55.000 0.00 0.00 29.28 4.04
6276 7953 2.048444 TGAATCATGGGCTGCTTCTC 57.952 50.000 0.00 0.00 32.40 2.87
6277 7954 2.584236 GATGAATCATGGGCTGCTTCT 58.416 47.619 0.00 0.00 32.40 2.85
6278 7955 1.266175 CGATGAATCATGGGCTGCTTC 59.734 52.381 0.00 0.00 31.91 3.86
6280 7957 0.471191 TCGATGAATCATGGGCTGCT 59.529 50.000 0.00 0.00 0.00 4.24
6281 7958 0.873054 CTCGATGAATCATGGGCTGC 59.127 55.000 0.00 0.00 0.00 5.25
6282 7959 2.538512 TCTCGATGAATCATGGGCTG 57.461 50.000 0.00 0.00 0.00 4.85
6283 7960 3.209410 GTTTCTCGATGAATCATGGGCT 58.791 45.455 0.00 0.00 34.24 5.19
6285 7962 4.395854 TGTTGTTTCTCGATGAATCATGGG 59.604 41.667 0.00 0.00 35.20 4.00
6286 7963 5.550232 TGTTGTTTCTCGATGAATCATGG 57.450 39.130 0.00 0.00 35.20 3.66
6287 7964 5.510674 GCTTGTTGTTTCTCGATGAATCATG 59.489 40.000 0.00 0.00 35.20 3.07
6288 7965 5.392380 GGCTTGTTGTTTCTCGATGAATCAT 60.392 40.000 0.00 0.00 35.20 2.45
6289 7966 4.083324 GGCTTGTTGTTTCTCGATGAATCA 60.083 41.667 0.00 0.00 34.24 2.57
6291 7968 3.820467 TGGCTTGTTGTTTCTCGATGAAT 59.180 39.130 0.00 0.00 34.24 2.57
6292 7969 3.003275 GTGGCTTGTTGTTTCTCGATGAA 59.997 43.478 0.00 0.00 0.00 2.57
6293 7970 2.548057 GTGGCTTGTTGTTTCTCGATGA 59.452 45.455 0.00 0.00 0.00 2.92
6294 7971 2.290367 TGTGGCTTGTTGTTTCTCGATG 59.710 45.455 0.00 0.00 0.00 3.84
6295 7972 2.290641 GTGTGGCTTGTTGTTTCTCGAT 59.709 45.455 0.00 0.00 0.00 3.59
6297 7974 1.670811 AGTGTGGCTTGTTGTTTCTCG 59.329 47.619 0.00 0.00 0.00 4.04
6298 7975 2.682856 TGAGTGTGGCTTGTTGTTTCTC 59.317 45.455 0.00 0.00 0.00 2.87
6299 7976 2.684881 CTGAGTGTGGCTTGTTGTTTCT 59.315 45.455 0.00 0.00 0.00 2.52
6301 7978 1.750778 CCTGAGTGTGGCTTGTTGTTT 59.249 47.619 0.00 0.00 0.00 2.83
6302 7979 1.340991 ACCTGAGTGTGGCTTGTTGTT 60.341 47.619 0.00 0.00 0.00 2.83
6303 7980 0.255890 ACCTGAGTGTGGCTTGTTGT 59.744 50.000 0.00 0.00 0.00 3.32
6304 7981 0.664761 CACCTGAGTGTGGCTTGTTG 59.335 55.000 0.00 0.00 39.30 3.33
6305 7982 3.100545 CACCTGAGTGTGGCTTGTT 57.899 52.632 0.00 0.00 39.30 2.83
6313 7990 1.151221 TGCAATGCCACCTGAGTGT 59.849 52.632 1.53 0.00 42.88 3.55
6314 7991 1.174078 TGTGCAATGCCACCTGAGTG 61.174 55.000 1.53 0.00 44.12 3.51
6317 7994 0.399833 TACTGTGCAATGCCACCTGA 59.600 50.000 1.53 0.00 34.85 3.86
6318 7995 0.806868 CTACTGTGCAATGCCACCTG 59.193 55.000 1.53 0.00 34.85 4.00
6319 7996 0.401738 ACTACTGTGCAATGCCACCT 59.598 50.000 1.53 0.00 34.85 4.00
6367 8131 2.464865 GATCTCATCTGACGAAACCCG 58.535 52.381 0.00 0.00 45.44 5.28
6375 8139 3.257469 TGCTGTTGGATCTCATCTGAC 57.743 47.619 0.00 0.00 0.00 3.51
6378 8142 2.026542 TGCTTGCTGTTGGATCTCATCT 60.027 45.455 0.00 0.00 0.00 2.90
6379 8143 2.097142 GTGCTTGCTGTTGGATCTCATC 59.903 50.000 0.00 0.00 0.00 2.92
6380 8144 2.089980 GTGCTTGCTGTTGGATCTCAT 58.910 47.619 0.00 0.00 0.00 2.90
6381 8145 1.202794 TGTGCTTGCTGTTGGATCTCA 60.203 47.619 0.00 0.00 0.00 3.27
6382 8146 1.467734 CTGTGCTTGCTGTTGGATCTC 59.532 52.381 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.