Multiple sequence alignment - TraesCS7B01G255900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G255900 chr7B 100.000 6602 0 0 1 6602 474414372 474407771 0.000000e+00 12192.0
1 TraesCS7B01G255900 chr7D 88.161 3007 228 65 1 2972 451975841 451972928 0.000000e+00 3463.0
2 TraesCS7B01G255900 chr7D 95.922 1496 48 8 5117 6602 451972742 451971250 0.000000e+00 2412.0
3 TraesCS7B01G255900 chr7D 96.985 199 6 0 4892 5090 451972936 451972738 1.060000e-87 335.0
4 TraesCS7B01G255900 chr3A 92.939 1926 123 7 2975 4893 156361588 156359669 0.000000e+00 2791.0
5 TraesCS7B01G255900 chr3D 92.447 1933 131 10 2973 4893 578207574 578209503 0.000000e+00 2747.0
6 TraesCS7B01G255900 chr3D 90.768 1939 161 11 2969 4893 601848374 601850308 0.000000e+00 2573.0
7 TraesCS7B01G255900 chr3D 86.207 58 4 4 6398 6453 594810464 594810519 7.150000e-05 60.2
8 TraesCS7B01G255900 chr2D 92.431 1929 137 6 2972 4893 635865809 635863883 0.000000e+00 2745.0
9 TraesCS7B01G255900 chr2D 91.489 47 2 1 6392 6438 419045827 419045783 5.530000e-06 63.9
10 TraesCS7B01G255900 chr1D 92.104 1925 143 6 2976 4893 426412855 426410933 0.000000e+00 2704.0
11 TraesCS7B01G255900 chr1D 73.804 397 69 18 156 530 191903851 191904234 2.500000e-24 124.0
12 TraesCS7B01G255900 chr2A 91.909 1928 142 11 2975 4893 348043588 348041666 0.000000e+00 2684.0
13 TraesCS7B01G255900 chr2A 91.498 1929 150 11 2973 4893 29798508 29796586 0.000000e+00 2641.0
14 TraesCS7B01G255900 chr5D 91.032 1929 161 8 2975 4893 81297221 81299147 0.000000e+00 2593.0
15 TraesCS7B01G255900 chr5D 90.829 1930 164 9 2974 4893 370635300 370637226 0.000000e+00 2571.0
16 TraesCS7B01G255900 chr7A 82.595 1310 132 48 913 2199 545540752 545541988 0.000000e+00 1068.0
17 TraesCS7B01G255900 chr7A 87.909 703 44 22 5603 6295 545543395 545544066 0.000000e+00 789.0
18 TraesCS7B01G255900 chr7A 85.953 719 65 17 2251 2936 545541978 545542693 0.000000e+00 736.0
19 TraesCS7B01G255900 chr7A 85.106 376 39 13 5123 5485 545542910 545543281 1.050000e-97 368.0
20 TraesCS7B01G255900 chr7A 91.414 198 15 1 4892 5087 545542708 545542905 3.030000e-68 270.0
21 TraesCS7B01G255900 chr7A 74.201 438 82 21 140 562 672611802 672612223 3.190000e-33 154.0
22 TraesCS7B01G255900 chr7A 73.380 432 95 14 140 562 672637861 672638281 6.900000e-30 143.0
23 TraesCS7B01G255900 chr7A 100.000 28 0 0 829 856 545540639 545540666 1.200000e-02 52.8
24 TraesCS7B01G255900 chr4A 75.000 232 37 12 322 544 639191338 639191119 3.280000e-13 87.9
25 TraesCS7B01G255900 chr6B 93.023 43 3 0 6403 6445 13932625 13932667 5.530000e-06 63.9
26 TraesCS7B01G255900 chr6B 90.909 44 3 1 6402 6445 18765226 18765184 2.570000e-04 58.4
27 TraesCS7B01G255900 chr5A 93.023 43 3 0 6403 6445 689619221 689619263 5.530000e-06 63.9
28 TraesCS7B01G255900 chr5A 97.222 36 1 0 6403 6438 293860695 293860730 1.990000e-05 62.1
29 TraesCS7B01G255900 chr6D 96.970 33 1 0 6403 6435 33882717 33882685 1.000000e-03 56.5
30 TraesCS7B01G255900 chr6A 100.000 29 0 0 670 698 513753126 513753154 3.000000e-03 54.7
31 TraesCS7B01G255900 chr1B 94.286 35 2 0 6401 6435 193790290 193790256 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G255900 chr7B 474407771 474414372 6601 True 12192.0 12192 100.000000 1 6602 1 chr7B.!!$R1 6601
1 TraesCS7B01G255900 chr7D 451971250 451975841 4591 True 2070.0 3463 93.689333 1 6602 3 chr7D.!!$R1 6601
2 TraesCS7B01G255900 chr3A 156359669 156361588 1919 True 2791.0 2791 92.939000 2975 4893 1 chr3A.!!$R1 1918
3 TraesCS7B01G255900 chr3D 578207574 578209503 1929 False 2747.0 2747 92.447000 2973 4893 1 chr3D.!!$F1 1920
4 TraesCS7B01G255900 chr3D 601848374 601850308 1934 False 2573.0 2573 90.768000 2969 4893 1 chr3D.!!$F3 1924
5 TraesCS7B01G255900 chr2D 635863883 635865809 1926 True 2745.0 2745 92.431000 2972 4893 1 chr2D.!!$R2 1921
6 TraesCS7B01G255900 chr1D 426410933 426412855 1922 True 2704.0 2704 92.104000 2976 4893 1 chr1D.!!$R1 1917
7 TraesCS7B01G255900 chr2A 348041666 348043588 1922 True 2684.0 2684 91.909000 2975 4893 1 chr2A.!!$R2 1918
8 TraesCS7B01G255900 chr2A 29796586 29798508 1922 True 2641.0 2641 91.498000 2973 4893 1 chr2A.!!$R1 1920
9 TraesCS7B01G255900 chr5D 81297221 81299147 1926 False 2593.0 2593 91.032000 2975 4893 1 chr5D.!!$F1 1918
10 TraesCS7B01G255900 chr5D 370635300 370637226 1926 False 2571.0 2571 90.829000 2974 4893 1 chr5D.!!$F2 1919
11 TraesCS7B01G255900 chr7A 545540639 545544066 3427 False 547.3 1068 88.829500 829 6295 6 chr7A.!!$F3 5466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
697 717 0.107703 CAGCGTTGGAGATGCCCTAA 60.108 55.000 0.00 0.0 41.38 2.69 F
1343 1399 0.038599 TGCCAGCATCCACATTCAGT 59.961 50.000 0.00 0.0 0.00 3.41 F
1369 1425 0.599204 CCCACGCACTGTACGTCTTT 60.599 55.000 2.54 0.0 42.96 2.52 F
1618 1685 0.851495 CTAGCGATGAGAAAGCTGCG 59.149 55.000 0.00 0.0 41.80 5.18 F
2378 2453 1.010797 CGATACATGCAAGGCACGC 60.011 57.895 0.00 0.0 43.04 5.34 F
3453 3579 0.035439 ACCCCAGCTAACCACATTCG 60.035 55.000 0.00 0.0 0.00 3.34 F
3845 3973 0.109532 TCCGAACCAAGTGCATCCAA 59.890 50.000 0.00 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1856 1924 0.443869 GCAACGTGTGATGCCTGTAG 59.556 55.000 0.00 0.00 37.89 2.74 R
3292 3412 0.317479 GCTACCGCTTGGATCCGTAT 59.683 55.000 7.39 0.00 36.26 3.06 R
3364 3485 1.633432 TGGGATGGAACTGTCGGAATT 59.367 47.619 0.00 0.00 0.00 2.17 R
3401 3526 0.596600 GCGGCTCGTATTCGGATTGA 60.597 55.000 0.00 0.00 37.69 2.57 R
3865 3993 0.312729 TCAGTTCAGACGTGCGCTAA 59.687 50.000 9.73 0.00 0.00 3.09 R
5099 5233 0.252239 TCCCTGAAGCTGCCAGAGTA 60.252 55.000 15.64 1.21 33.65 2.59 R
5718 5894 0.312102 TAGATGCGCGGAGATGACAG 59.688 55.000 8.83 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.113745 CCATTGTGAGCGATGGCC 58.886 61.111 0.00 0.00 46.44 5.36
53 54 4.019983 GGAGAGCCGGAGACAGAA 57.980 61.111 5.05 0.00 0.00 3.02
54 55 1.813192 GGAGAGCCGGAGACAGAAG 59.187 63.158 5.05 0.00 0.00 2.85
55 56 1.140804 GAGAGCCGGAGACAGAAGC 59.859 63.158 5.05 0.00 0.00 3.86
56 57 2.185608 GAGCCGGAGACAGAAGCC 59.814 66.667 5.05 0.00 0.00 4.35
57 58 3.708220 GAGCCGGAGACAGAAGCCG 62.708 68.421 5.05 0.00 44.42 5.52
93 94 1.605453 GTGGCGGTGGAGGGATTTA 59.395 57.895 0.00 0.00 0.00 1.40
100 101 1.685180 GGTGGAGGGATTTAACTGGGC 60.685 57.143 0.00 0.00 0.00 5.36
101 102 1.005450 GTGGAGGGATTTAACTGGGCA 59.995 52.381 0.00 0.00 0.00 5.36
102 103 1.005450 TGGAGGGATTTAACTGGGCAC 59.995 52.381 0.00 0.00 0.00 5.01
125 130 2.105528 ACGTCGCCAACTTCACGT 59.894 55.556 0.00 0.00 40.56 4.49
126 131 1.947642 ACGTCGCCAACTTCACGTC 60.948 57.895 0.00 0.00 41.51 4.34
133 138 1.635663 CCAACTTCACGTCGGCCATC 61.636 60.000 2.24 0.00 0.00 3.51
157 162 2.895372 GCCGCCACCAATACCGAG 60.895 66.667 0.00 0.00 0.00 4.63
166 171 4.581868 CCACCAATACCGAGGAAAAGTAA 58.418 43.478 0.00 0.00 0.00 2.24
173 178 4.360951 ACCGAGGAAAAGTAAACCATGA 57.639 40.909 0.00 0.00 0.00 3.07
181 186 2.789409 AGTAAACCATGAGAGGCCAC 57.211 50.000 5.01 0.00 0.00 5.01
184 189 3.628646 AACCATGAGAGGCCACCGC 62.629 63.158 5.01 0.00 0.00 5.68
196 201 2.270205 CACCGCTGCTTGGATCCT 59.730 61.111 14.23 0.00 0.00 3.24
203 208 1.202746 GCTGCTTGGATCCTAGGAAGG 60.203 57.143 22.43 11.47 45.21 3.46
225 230 4.838152 CACCATCACCTCGGCGGG 62.838 72.222 7.21 1.99 36.97 6.13
228 233 3.536917 CATCACCTCGGCGGGCTA 61.537 66.667 7.21 0.00 36.97 3.93
277 282 2.202878 CGTAGGCCATGGTGACCG 60.203 66.667 14.67 7.58 0.00 4.79
279 284 1.153429 GTAGGCCATGGTGACCGTC 60.153 63.158 14.67 1.57 0.00 4.79
280 285 1.305802 TAGGCCATGGTGACCGTCT 60.306 57.895 14.67 0.00 0.00 4.18
296 301 2.679996 CTTCCCCCGCCCCAAAAG 60.680 66.667 0.00 0.00 0.00 2.27
297 302 3.186680 TTCCCCCGCCCCAAAAGA 61.187 61.111 0.00 0.00 0.00 2.52
298 303 2.514516 CTTCCCCCGCCCCAAAAGAT 62.515 60.000 0.00 0.00 0.00 2.40
310 315 2.684881 CCCAAAAGATGACCCTGATTCG 59.315 50.000 0.00 0.00 0.00 3.34
316 321 1.936547 GATGACCCTGATTCGTGCTTC 59.063 52.381 0.00 0.00 0.00 3.86
319 324 1.667724 GACCCTGATTCGTGCTTCATG 59.332 52.381 0.00 0.00 0.00 3.07
323 328 2.353889 CCTGATTCGTGCTTCATGGAAG 59.646 50.000 1.67 1.67 42.03 3.46
365 370 2.158900 CCGTTGAAGCATATCCCTCAGT 60.159 50.000 0.00 0.00 0.00 3.41
371 376 2.121948 AGCATATCCCTCAGTGCTCAA 58.878 47.619 0.00 0.00 43.97 3.02
374 379 0.833287 TATCCCTCAGTGCTCAAGGC 59.167 55.000 2.56 0.00 42.22 4.35
376 381 2.435586 CCTCAGTGCTCAAGGCGG 60.436 66.667 0.00 0.00 45.43 6.13
377 382 2.345244 CTCAGTGCTCAAGGCGGT 59.655 61.111 0.00 0.00 45.43 5.68
379 384 2.031012 CAGTGCTCAAGGCGGTCA 59.969 61.111 0.00 0.00 45.43 4.02
380 385 2.031516 CAGTGCTCAAGGCGGTCAG 61.032 63.158 0.00 0.00 45.43 3.51
381 386 2.210013 AGTGCTCAAGGCGGTCAGA 61.210 57.895 0.00 0.00 45.43 3.27
393 398 1.703438 CGGTCAGATGAGCTTGCTGC 61.703 60.000 10.05 0.00 40.17 5.25
404 409 4.738998 TTGCTGCCGGACATGGGG 62.739 66.667 5.05 0.00 0.00 4.96
409 414 1.987807 CTGCCGGACATGGGGAAGAT 61.988 60.000 5.05 0.00 29.56 2.40
413 423 1.123077 CGGACATGGGGAAGATCTGA 58.877 55.000 0.00 0.00 0.00 3.27
418 428 4.141298 GGACATGGGGAAGATCTGAGAAAT 60.141 45.833 0.00 0.00 0.00 2.17
425 435 4.506448 GGGAAGATCTGAGAAATGGGATCC 60.506 50.000 1.92 1.92 36.27 3.36
447 457 1.228367 TCGGCCGGGGATAGACTAC 60.228 63.158 27.83 0.00 0.00 2.73
449 459 1.228367 GGCCGGGGATAGACTACGA 60.228 63.158 2.18 0.00 0.00 3.43
465 475 9.908747 ATAGACTACGATAGAATAACATAGCCT 57.091 33.333 0.00 0.00 41.38 4.58
467 477 9.386010 AGACTACGATAGAATAACATAGCCTAG 57.614 37.037 0.00 0.00 41.38 3.02
468 478 9.165035 GACTACGATAGAATAACATAGCCTAGT 57.835 37.037 0.00 0.00 41.38 2.57
469 479 9.165035 ACTACGATAGAATAACATAGCCTAGTC 57.835 37.037 0.00 0.00 41.38 2.59
470 480 7.393841 ACGATAGAATAACATAGCCTAGTCC 57.606 40.000 0.00 0.00 41.38 3.85
477 487 6.696441 ATAACATAGCCTAGTCCGCTATAC 57.304 41.667 10.51 0.00 45.58 1.47
486 496 5.770417 CCTAGTCCGCTATACTTTAGTTGG 58.230 45.833 0.00 0.00 0.00 3.77
495 506 7.280205 CCGCTATACTTTAGTTGGAAATGTCTT 59.720 37.037 0.00 0.00 0.00 3.01
530 541 4.619437 TTCGCCCGGTTTATATGAAAAC 57.381 40.909 0.00 0.00 38.39 2.43
547 558 0.591170 AACCAACCGATTTGCACGAG 59.409 50.000 0.00 0.00 33.34 4.18
551 562 2.542824 CCAACCGATTTGCACGAGTTTT 60.543 45.455 0.00 0.00 33.34 2.43
571 582 3.840890 TGTCCGGTTTGAAATGTATGC 57.159 42.857 0.00 0.00 0.00 3.14
603 623 2.048597 CCGCACTGGTGTTCGCTA 60.049 61.111 2.64 0.00 31.80 4.26
613 633 1.672145 GGTGTTCGCTAACTGGTCCTC 60.672 57.143 2.53 0.00 36.51 3.71
614 634 0.606604 TGTTCGCTAACTGGTCCTCC 59.393 55.000 2.53 0.00 36.51 4.30
615 635 0.896226 GTTCGCTAACTGGTCCTCCT 59.104 55.000 0.00 0.00 32.54 3.69
616 636 1.275573 GTTCGCTAACTGGTCCTCCTT 59.724 52.381 0.00 0.00 32.54 3.36
617 637 1.640917 TCGCTAACTGGTCCTCCTTT 58.359 50.000 0.00 0.00 34.23 3.11
618 638 1.975680 TCGCTAACTGGTCCTCCTTTT 59.024 47.619 0.00 0.00 34.23 2.27
636 656 2.358322 TTTTTCACTGACTGGACCCC 57.642 50.000 0.00 0.00 0.00 4.95
637 657 1.217916 TTTTCACTGACTGGACCCCA 58.782 50.000 0.00 0.00 0.00 4.96
638 658 1.444933 TTTCACTGACTGGACCCCAT 58.555 50.000 0.00 0.00 30.82 4.00
639 659 0.692476 TTCACTGACTGGACCCCATG 59.308 55.000 0.00 0.00 30.82 3.66
640 660 1.377725 CACTGACTGGACCCCATGC 60.378 63.158 0.00 0.00 30.82 4.06
641 661 2.124983 CTGACTGGACCCCATGCG 60.125 66.667 0.00 0.00 30.82 4.73
642 662 3.687321 CTGACTGGACCCCATGCGG 62.687 68.421 0.00 0.00 30.82 5.69
653 673 4.069869 CATGCGGGATCCATGGAC 57.930 61.111 18.99 11.10 37.12 4.02
654 674 1.962822 CATGCGGGATCCATGGACG 60.963 63.158 18.99 17.59 37.12 4.79
655 675 3.182590 ATGCGGGATCCATGGACGG 62.183 63.158 18.99 10.97 0.00 4.79
656 676 3.546543 GCGGGATCCATGGACGGA 61.547 66.667 18.99 0.00 40.07 4.69
658 678 1.004560 CGGGATCCATGGACGGATG 60.005 63.158 18.99 2.29 46.13 3.51
659 679 1.471829 CGGGATCCATGGACGGATGA 61.472 60.000 18.99 0.00 46.13 2.92
660 680 0.764890 GGGATCCATGGACGGATGAA 59.235 55.000 18.99 0.00 46.13 2.57
665 685 1.207089 TCCATGGACGGATGAAGTGTC 59.793 52.381 11.44 0.00 0.00 3.67
683 703 0.896940 TCCGGTTTAGAGGTCAGCGT 60.897 55.000 0.00 0.00 0.00 5.07
686 706 1.439679 GGTTTAGAGGTCAGCGTTGG 58.560 55.000 0.00 0.00 0.00 3.77
694 714 2.109126 GTCAGCGTTGGAGATGCCC 61.109 63.158 0.00 0.00 41.38 5.36
696 716 0.975556 TCAGCGTTGGAGATGCCCTA 60.976 55.000 0.00 0.00 41.38 3.53
697 717 0.107703 CAGCGTTGGAGATGCCCTAA 60.108 55.000 0.00 0.00 41.38 2.69
725 749 4.762765 TGTGTTTAATGAAGGCACGGTTAT 59.237 37.500 0.00 0.00 33.23 1.89
726 750 5.241949 TGTGTTTAATGAAGGCACGGTTATT 59.758 36.000 0.00 0.00 33.23 1.40
728 752 7.040617 TGTGTTTAATGAAGGCACGGTTATTTA 60.041 33.333 0.00 0.00 33.23 1.40
729 753 7.808856 GTGTTTAATGAAGGCACGGTTATTTAA 59.191 33.333 0.00 0.00 0.00 1.52
731 755 9.194271 GTTTAATGAAGGCACGGTTATTTAAAA 57.806 29.630 0.00 0.00 0.00 1.52
762 788 0.317160 CGGCACAACTCTAGACCACA 59.683 55.000 0.00 0.00 0.00 4.17
763 789 1.670087 CGGCACAACTCTAGACCACAG 60.670 57.143 0.00 0.00 0.00 3.66
773 799 0.677288 TAGACCACAGAACACCACCG 59.323 55.000 0.00 0.00 0.00 4.94
776 802 2.978010 CACAGAACACCACCGCCC 60.978 66.667 0.00 0.00 0.00 6.13
777 803 3.484806 ACAGAACACCACCGCCCA 61.485 61.111 0.00 0.00 0.00 5.36
778 804 2.669569 CAGAACACCACCGCCCAG 60.670 66.667 0.00 0.00 0.00 4.45
783 809 4.473520 CACCACCGCCCAGCCTAG 62.474 72.222 0.00 0.00 0.00 3.02
784 810 4.715130 ACCACCGCCCAGCCTAGA 62.715 66.667 0.00 0.00 0.00 2.43
785 811 3.399181 CCACCGCCCAGCCTAGAA 61.399 66.667 0.00 0.00 0.00 2.10
787 813 3.771160 ACCGCCCAGCCTAGAACG 61.771 66.667 0.00 0.00 0.00 3.95
789 815 4.148825 CGCCCAGCCTAGAACGCT 62.149 66.667 0.00 0.00 36.91 5.07
790 816 2.269241 GCCCAGCCTAGAACGCTT 59.731 61.111 0.00 0.00 33.17 4.68
791 817 1.520666 GCCCAGCCTAGAACGCTTA 59.479 57.895 0.00 0.00 33.17 3.09
792 818 0.530870 GCCCAGCCTAGAACGCTTAG 60.531 60.000 0.00 0.00 33.17 2.18
822 848 3.199442 TGAACCCTGGACCTGATTCTA 57.801 47.619 0.00 0.00 0.00 2.10
955 1011 2.095461 CAATCTCGGTGTCCTCTCTCA 58.905 52.381 0.00 0.00 0.00 3.27
976 1032 2.114616 CTGTCCCTGAATCCTACAGCT 58.885 52.381 0.00 0.00 34.47 4.24
978 1034 2.501723 TGTCCCTGAATCCTACAGCTTC 59.498 50.000 0.00 0.00 34.47 3.86
1054 1110 2.311542 TCCCTCCAAGGTGTGCATAATT 59.688 45.455 0.00 0.00 31.93 1.40
1242 1298 7.920151 TGGCACTTAATTATGTCATGTAAATGC 59.080 33.333 1.17 9.12 0.00 3.56
1244 1300 7.855409 GCACTTAATTATGTCATGTAAATGCGA 59.145 33.333 1.17 0.00 0.00 5.10
1258 1314 7.917720 TGTAAATGCGAATTCAATCATCATG 57.082 32.000 6.22 0.00 0.00 3.07
1329 1385 0.610174 TCTCAGCTGTTACCTGCCAG 59.390 55.000 14.67 0.00 36.27 4.85
1343 1399 0.038599 TGCCAGCATCCACATTCAGT 59.961 50.000 0.00 0.00 0.00 3.41
1344 1400 0.737219 GCCAGCATCCACATTCAGTC 59.263 55.000 0.00 0.00 0.00 3.51
1345 1401 1.386533 CCAGCATCCACATTCAGTCC 58.613 55.000 0.00 0.00 0.00 3.85
1346 1402 1.386533 CAGCATCCACATTCAGTCCC 58.613 55.000 0.00 0.00 0.00 4.46
1347 1403 0.994247 AGCATCCACATTCAGTCCCA 59.006 50.000 0.00 0.00 0.00 4.37
1348 1404 1.098050 GCATCCACATTCAGTCCCAC 58.902 55.000 0.00 0.00 0.00 4.61
1369 1425 0.599204 CCCACGCACTGTACGTCTTT 60.599 55.000 2.54 0.00 42.96 2.52
1384 1440 1.521423 GTCTTTCACACTGAACCGTCG 59.479 52.381 0.00 0.00 35.89 5.12
1399 1456 5.049954 TGAACCGTCGAAAAATTCAGTTAGG 60.050 40.000 0.00 0.00 0.00 2.69
1405 1462 4.076394 CGAAAAATTCAGTTAGGTCCCCA 58.924 43.478 0.00 0.00 0.00 4.96
1412 1469 4.002256 TCAGTTAGGTCCCCATGTATCA 57.998 45.455 0.00 0.00 0.00 2.15
1415 1472 3.711704 AGTTAGGTCCCCATGTATCAGTG 59.288 47.826 0.00 0.00 0.00 3.66
1417 1474 2.119495 AGGTCCCCATGTATCAGTGAC 58.881 52.381 0.00 0.00 0.00 3.67
1424 1484 3.561097 CCCATGTATCAGTGACCAACCAA 60.561 47.826 0.00 0.00 0.00 3.67
1432 1492 3.054287 TCAGTGACCAACCAAACCTTACA 60.054 43.478 0.00 0.00 0.00 2.41
1435 1495 5.533154 CAGTGACCAACCAAACCTTACATAA 59.467 40.000 0.00 0.00 0.00 1.90
1439 1506 8.745590 GTGACCAACCAAACCTTACATAAATAT 58.254 33.333 0.00 0.00 0.00 1.28
1540 1607 1.935933 TAATCGCCGAAGAAGCTTCC 58.064 50.000 22.81 7.72 0.00 3.46
1590 1657 5.295152 CATCCTTGATCTCAATGTCGATGA 58.705 41.667 0.00 0.00 35.02 2.92
1608 1675 4.437930 CGATGATGATGCTACTAGCGATGA 60.438 45.833 3.59 0.00 46.26 2.92
1618 1685 0.851495 CTAGCGATGAGAAAGCTGCG 59.149 55.000 0.00 0.00 41.80 5.18
1654 1721 1.265365 GCTGTTCTTCAGTCTTGCACC 59.735 52.381 0.00 0.00 45.23 5.01
1727 1795 1.774110 TGTGTTTGCAGTGGTTCCAT 58.226 45.000 0.00 0.00 0.00 3.41
1732 1800 4.941263 GTGTTTGCAGTGGTTCCATATCTA 59.059 41.667 0.00 0.00 0.00 1.98
1754 1822 8.824159 TCTAGTTTTCTCTGAACAAATCTCAG 57.176 34.615 0.00 0.00 41.47 3.35
1755 1823 6.311055 AGTTTTCTCTGAACAAATCTCAGC 57.689 37.500 0.00 0.00 40.18 4.26
1756 1824 6.060788 AGTTTTCTCTGAACAAATCTCAGCT 58.939 36.000 0.00 0.00 40.18 4.24
1757 1825 7.220030 AGTTTTCTCTGAACAAATCTCAGCTA 58.780 34.615 0.00 0.00 40.18 3.32
1758 1826 7.172361 AGTTTTCTCTGAACAAATCTCAGCTAC 59.828 37.037 0.00 0.00 40.18 3.58
1760 1828 5.718146 TCTCTGAACAAATCTCAGCTACTG 58.282 41.667 0.00 0.00 40.18 2.74
1762 1830 4.528206 TCTGAACAAATCTCAGCTACTGGA 59.472 41.667 0.00 0.00 40.18 3.86
1764 1832 5.240891 TGAACAAATCTCAGCTACTGGAAG 58.759 41.667 0.00 0.00 42.29 3.46
1765 1833 3.604582 ACAAATCTCAGCTACTGGAAGC 58.395 45.455 0.00 0.00 43.11 3.86
1766 1834 3.008375 ACAAATCTCAGCTACTGGAAGCA 59.992 43.478 6.97 0.00 45.30 3.91
1767 1835 2.977772 ATCTCAGCTACTGGAAGCAC 57.022 50.000 6.97 0.00 45.30 4.40
1768 1836 1.632589 TCTCAGCTACTGGAAGCACA 58.367 50.000 6.97 0.00 45.30 4.57
1777 1845 1.202976 ACTGGAAGCACAAGCCATTCT 60.203 47.619 0.00 0.00 43.56 2.40
1778 1846 1.201647 CTGGAAGCACAAGCCATTCTG 59.798 52.381 0.00 0.00 43.56 3.02
1779 1847 1.202915 TGGAAGCACAAGCCATTCTGA 60.203 47.619 0.00 0.00 43.56 3.27
1788 1856 1.552578 AGCCATTCTGAAGCATGCAA 58.447 45.000 21.98 5.01 0.00 4.08
1800 1868 6.654582 TCTGAAGCATGCAAAATTCAGTAGTA 59.345 34.615 30.77 18.24 45.63 1.82
1801 1869 6.611381 TGAAGCATGCAAAATTCAGTAGTAC 58.389 36.000 21.98 0.00 0.00 2.73
1802 1870 5.221891 AGCATGCAAAATTCAGTAGTACG 57.778 39.130 21.98 0.00 0.00 3.67
1803 1871 4.695455 AGCATGCAAAATTCAGTAGTACGT 59.305 37.500 21.98 0.00 0.00 3.57
1856 1924 8.341173 GTGATCAAAATGTCATACCATCTCTTC 58.659 37.037 0.00 0.00 0.00 2.87
1894 1962 1.202222 GCATCTTCAAATGGACTGCCG 60.202 52.381 0.00 0.00 36.79 5.69
1996 2067 2.749621 CAGTCAGCTAAATGTCCCCAAC 59.250 50.000 0.00 0.00 0.00 3.77
2003 2074 4.083565 GCTAAATGTCCCCAACCAAACTA 58.916 43.478 0.00 0.00 0.00 2.24
2008 2079 2.719705 TGTCCCCAACCAAACTAATCCT 59.280 45.455 0.00 0.00 0.00 3.24
2135 2206 3.340814 TTCAGAGATTCCAGTGAAGCC 57.659 47.619 0.00 0.00 37.61 4.35
2195 2266 9.614792 AGTCTCATTTACTTACAAGTGTCTTTT 57.385 29.630 4.86 0.00 40.07 2.27
2201 2272 8.455598 TTTACTTACAAGTGTCTTTTGCAAAC 57.544 30.769 12.39 1.55 40.07 2.93
2220 2291 7.661968 TGCAAACATGCAATACTTTAGGTTAA 58.338 30.769 0.21 0.00 42.40 2.01
2236 2307 9.774742 CTTTAGGTTAAGATGCAGTATTTGTTC 57.225 33.333 0.00 0.00 0.00 3.18
2237 2308 8.856153 TTAGGTTAAGATGCAGTATTTGTTCA 57.144 30.769 0.00 0.00 0.00 3.18
2242 2313 8.726988 GTTAAGATGCAGTATTTGTTCAGGTAA 58.273 33.333 0.00 0.00 0.00 2.85
2249 2320 9.853555 TGCAGTATTTGTTCAGGTAAATAATTG 57.146 29.630 0.00 0.00 32.39 2.32
2256 2327 9.606631 TTTGTTCAGGTAAATAATTGTGCTTTT 57.393 25.926 0.00 0.00 0.00 2.27
2331 2402 6.717289 ACTATACAATGGACAACAAGGCTTA 58.283 36.000 0.00 0.00 0.00 3.09
2378 2453 1.010797 CGATACATGCAAGGCACGC 60.011 57.895 0.00 0.00 43.04 5.34
2390 2465 1.604604 AGGCACGCACACAATTACTT 58.395 45.000 0.00 0.00 0.00 2.24
2402 2477 6.797033 GCACACAATTACTTGTCACAATCTAC 59.203 38.462 0.00 0.00 43.76 2.59
2405 2480 7.225931 ACACAATTACTTGTCACAATCTACGTT 59.774 33.333 0.00 0.00 43.76 3.99
2406 2481 8.705134 CACAATTACTTGTCACAATCTACGTTA 58.295 33.333 0.00 0.00 43.76 3.18
2423 2498 3.313249 ACGTTACTTTGTGTAAACTGCCC 59.687 43.478 0.00 0.00 42.12 5.36
2470 2545 6.020360 GCTCTTTTTGTGATGTCACTTTCAAC 60.020 38.462 13.71 0.00 46.55 3.18
2496 2604 1.541310 GGGCCTTGGCAAACTTACCC 61.541 60.000 14.04 4.24 0.00 3.69
2502 2610 1.287815 GGCAAACTTACCCAACGGC 59.712 57.895 0.00 0.00 0.00 5.68
2530 2638 5.489278 AGCTAGTGAAAGTCCCCTTATTTCT 59.511 40.000 0.00 0.00 34.70 2.52
2625 2733 1.840635 GCTTGTCTCCCTGGGATAAGT 59.159 52.381 17.51 0.00 35.39 2.24
2642 2750 7.044798 GGGATAAGTGAAGTGAGCATATATCC 58.955 42.308 0.00 0.00 36.32 2.59
2704 2812 8.088981 TGAGAACTAACCTTCATGTCTACTTTC 58.911 37.037 0.00 0.00 0.00 2.62
2808 2916 1.124780 TCGGTGTTCTTCACTTGGGA 58.875 50.000 0.00 0.00 45.50 4.37
2811 2919 2.884639 CGGTGTTCTTCACTTGGGAAAT 59.115 45.455 0.00 0.00 45.50 2.17
2866 2975 5.667466 AGTTCTCCAACTGTACTTTCGAAA 58.333 37.500 10.71 10.71 41.64 3.46
2874 2983 7.711772 TCCAACTGTACTTTCGAAAATGTCTAA 59.288 33.333 12.41 0.00 0.00 2.10
3014 3127 4.864334 CCCCGGCCTCTGCATCAC 62.864 72.222 0.00 0.00 40.13 3.06
3083 3198 7.715249 ACAAAGTCTCAAAAGTATTACAGCTCA 59.285 33.333 0.00 0.00 0.00 4.26
3136 3256 6.389830 AAAGTACATGCTGACAATCACAAA 57.610 33.333 0.00 0.00 0.00 2.83
3292 3412 2.696526 AGGAGTGAGTAAGGACCACA 57.303 50.000 0.00 0.00 32.33 4.17
3401 3526 1.745087 CCCACAGAAGCGCACATATTT 59.255 47.619 11.47 0.00 0.00 1.40
3449 3575 0.847373 TTCAACCCCAGCTAACCACA 59.153 50.000 0.00 0.00 0.00 4.17
3453 3579 0.035439 ACCCCAGCTAACCACATTCG 60.035 55.000 0.00 0.00 0.00 3.34
3462 3588 2.766970 AACCACATTCGAAACAACGG 57.233 45.000 0.00 1.35 0.00 4.44
3493 3619 5.300792 GTCAACTGGAGGGTTAATGTTGAAA 59.699 40.000 7.74 0.00 43.11 2.69
3583 3710 8.767085 GTTTCATCATGATCACAAAACAACAAT 58.233 29.630 4.86 0.00 0.00 2.71
3602 3729 2.543037 TGTGAGCTACCTACCCATCA 57.457 50.000 0.00 0.00 0.00 3.07
3615 3742 6.449956 ACCTACCCATCACCTCTTAATTAGA 58.550 40.000 0.00 0.00 0.00 2.10
3625 3752 8.146053 TCACCTCTTAATTAGATTGTCCTTGA 57.854 34.615 0.00 0.00 30.92 3.02
3643 3770 5.586243 TCCTTGATGAGTATTACTTGCTTGC 59.414 40.000 0.00 0.00 0.00 4.01
3787 3915 4.695217 TTTTAGCTAGTTTCCATTGCGG 57.305 40.909 0.00 0.00 0.00 5.69
3845 3973 0.109532 TCCGAACCAAGTGCATCCAA 59.890 50.000 0.00 0.00 0.00 3.53
3865 3993 0.745845 GCTGTCCATCGCTCACCAAT 60.746 55.000 0.00 0.00 0.00 3.16
3967 4099 8.940397 ATGTTATAAAGGGTTGGATATTGGAG 57.060 34.615 0.00 0.00 0.00 3.86
3968 4100 8.108378 TGTTATAAAGGGTTGGATATTGGAGA 57.892 34.615 0.00 0.00 0.00 3.71
4004 4136 1.411612 CCTAACCACGTATCCTCCCAC 59.588 57.143 0.00 0.00 0.00 4.61
4055 4187 7.675619 ACCAAGAATTTGACCCTATGAAAGAAT 59.324 33.333 0.00 0.00 36.36 2.40
4323 4455 0.179936 CCTCTTGGCCTCATCTGACC 59.820 60.000 3.32 0.00 0.00 4.02
4337 4469 1.294659 CTGACCGCCAGAAGAACTGC 61.295 60.000 0.00 0.00 45.78 4.40
5090 5224 7.226720 TCAGAAAGAGAAATGTAGTTTGGACAC 59.773 37.037 0.00 0.00 0.00 3.67
5091 5225 7.012327 CAGAAAGAGAAATGTAGTTTGGACACA 59.988 37.037 0.00 0.00 0.00 3.72
5092 5226 6.619801 AAGAGAAATGTAGTTTGGACACAC 57.380 37.500 0.00 0.00 0.00 3.82
5093 5227 5.930135 AGAGAAATGTAGTTTGGACACACT 58.070 37.500 0.00 0.00 0.00 3.55
5094 5228 7.062749 AGAGAAATGTAGTTTGGACACACTA 57.937 36.000 0.00 0.00 0.00 2.74
5095 5229 6.929606 AGAGAAATGTAGTTTGGACACACTAC 59.070 38.462 17.48 17.48 43.91 2.73
5096 5230 6.827727 AGAAATGTAGTTTGGACACACTACT 58.172 36.000 22.15 8.69 43.96 2.57
5097 5231 6.706270 AGAAATGTAGTTTGGACACACTACTG 59.294 38.462 22.15 0.00 43.96 2.74
5098 5232 5.801531 ATGTAGTTTGGACACACTACTGA 57.198 39.130 22.15 9.56 43.96 3.41
5099 5233 5.801531 TGTAGTTTGGACACACTACTGAT 57.198 39.130 22.15 0.00 43.96 2.90
5100 5234 6.904463 TGTAGTTTGGACACACTACTGATA 57.096 37.500 22.15 6.44 43.96 2.15
5101 5235 6.684686 TGTAGTTTGGACACACTACTGATAC 58.315 40.000 22.15 5.55 43.96 2.24
5102 5236 6.492429 TGTAGTTTGGACACACTACTGATACT 59.508 38.462 22.15 0.00 43.96 2.12
5103 5237 6.026947 AGTTTGGACACACTACTGATACTC 57.973 41.667 0.00 0.00 0.00 2.59
5104 5238 5.775701 AGTTTGGACACACTACTGATACTCT 59.224 40.000 0.00 0.00 0.00 3.24
5105 5239 5.644977 TTGGACACACTACTGATACTCTG 57.355 43.478 0.00 0.00 0.00 3.35
5106 5240 4.017126 TGGACACACTACTGATACTCTGG 58.983 47.826 0.00 0.00 0.00 3.86
5107 5241 3.181485 GGACACACTACTGATACTCTGGC 60.181 52.174 0.00 0.00 0.00 4.85
5108 5242 3.431415 ACACACTACTGATACTCTGGCA 58.569 45.455 0.00 0.00 0.00 4.92
5109 5243 3.445450 ACACACTACTGATACTCTGGCAG 59.555 47.826 8.58 8.58 35.81 4.85
5110 5244 2.428890 ACACTACTGATACTCTGGCAGC 59.571 50.000 10.34 0.00 33.03 5.25
5111 5245 2.692557 CACTACTGATACTCTGGCAGCT 59.307 50.000 10.34 0.00 33.03 4.24
5112 5246 3.131933 CACTACTGATACTCTGGCAGCTT 59.868 47.826 10.34 0.84 33.03 3.74
5113 5247 2.977772 ACTGATACTCTGGCAGCTTC 57.022 50.000 10.34 4.39 33.03 3.86
5114 5248 2.182827 ACTGATACTCTGGCAGCTTCA 58.817 47.619 10.34 8.71 33.03 3.02
5115 5249 2.168106 ACTGATACTCTGGCAGCTTCAG 59.832 50.000 22.62 22.62 39.08 3.02
5116 5250 1.483827 TGATACTCTGGCAGCTTCAGG 59.516 52.381 10.34 7.16 33.36 3.86
5117 5251 0.835941 ATACTCTGGCAGCTTCAGGG 59.164 55.000 10.34 11.14 38.61 4.45
5118 5252 0.252239 TACTCTGGCAGCTTCAGGGA 60.252 55.000 17.82 2.93 36.30 4.20
5119 5253 1.078567 CTCTGGCAGCTTCAGGGAC 60.079 63.158 10.34 0.00 34.80 4.46
5120 5254 1.834856 CTCTGGCAGCTTCAGGGACA 61.835 60.000 10.34 0.00 34.80 4.02
5121 5255 1.376942 CTGGCAGCTTCAGGGACAG 60.377 63.158 0.00 0.00 0.00 3.51
5205 5340 6.211515 TGTTTAGTTCTTACTGGACTCGTTC 58.788 40.000 0.00 0.00 35.78 3.95
5322 5458 6.032094 GTGTCATGTTATCTTCCATGCTTTG 58.968 40.000 0.00 0.00 38.63 2.77
5353 5489 4.077108 TGATACTCTGGCGTATACCGAAT 58.923 43.478 0.00 0.00 39.56 3.34
5473 5618 6.764877 ATCGGAAAAGTAATATACAGCACG 57.235 37.500 0.00 0.00 0.00 5.34
5527 5672 6.483307 CCATGTAGTTGAAACTCAGACTTTCA 59.517 38.462 0.00 2.09 40.37 2.69
5531 5683 6.857777 AGTTGAAACTCAGACTTTCAGATG 57.142 37.500 5.65 0.00 38.53 2.90
5534 5686 8.153550 AGTTGAAACTCAGACTTTCAGATGTAT 58.846 33.333 5.65 0.00 38.53 2.29
5559 5711 1.290203 AATTATGCCGAGACAGCACG 58.710 50.000 0.00 0.00 44.40 5.34
5705 5881 2.861462 TGTTGCAACCTGTAAACAGC 57.139 45.000 26.14 0.00 42.47 4.40
5718 5894 5.220739 CCTGTAAACAGCATCAGTTCATAGC 60.221 44.000 4.53 0.00 42.47 2.97
5728 5904 4.662468 TCAGTTCATAGCTGTCATCTCC 57.338 45.455 0.00 0.00 35.60 3.71
5731 5907 0.312102 TCATAGCTGTCATCTCCGCG 59.688 55.000 0.00 0.00 0.00 6.46
5743 5919 2.140065 TCTCCGCGCATCTATTTCAG 57.860 50.000 8.75 0.00 0.00 3.02
5899 6080 4.094887 GCGGAAAAGCAACATGATAAGAGA 59.905 41.667 0.00 0.00 37.05 3.10
5900 6081 5.728898 GCGGAAAAGCAACATGATAAGAGAG 60.729 44.000 0.00 0.00 37.05 3.20
5901 6082 5.582269 CGGAAAAGCAACATGATAAGAGAGA 59.418 40.000 0.00 0.00 0.00 3.10
5902 6083 6.238049 CGGAAAAGCAACATGATAAGAGAGAG 60.238 42.308 0.00 0.00 0.00 3.20
5912 6095 8.593945 ACATGATAAGAGAGAGAGAGAGTTTT 57.406 34.615 0.00 0.00 0.00 2.43
5939 6122 7.495934 AGCAGATTACCACTGATAACAATGTAC 59.504 37.037 0.00 0.00 37.54 2.90
5957 6140 3.036084 CCAGACGTTCGTGCGCTT 61.036 61.111 9.73 0.00 34.88 4.68
6250 6439 3.421844 GTTTGGATACTCTTGCCAGGTT 58.578 45.455 0.00 0.00 32.47 3.50
6283 6472 5.689383 TTTCTGCAAGTAAGGTGTGATTC 57.311 39.130 0.00 0.00 33.76 2.52
6339 6528 1.811965 TCAACGCACTGATGAAATGGG 59.188 47.619 0.00 0.00 0.00 4.00
6384 6573 7.692908 TTACAAAGTGCAAAAATGCTAGAAC 57.307 32.000 0.00 0.00 35.49 3.01
6551 6741 4.152402 CCATCGTGTTTTCTCACTACCTTG 59.848 45.833 0.00 0.00 36.33 3.61
6558 6748 2.543777 TCTCACTACCTTGTTGGCAC 57.456 50.000 0.00 0.00 40.22 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 2.125912 CACGGCTTCTGTCTCCGG 60.126 66.667 0.00 0.00 46.78 5.14
44 45 0.670854 GGAACACGGCTTCTGTCTCC 60.671 60.000 0.00 0.00 0.00 3.71
45 46 0.670854 GGGAACACGGCTTCTGTCTC 60.671 60.000 0.00 0.00 0.00 3.36
46 47 1.371558 GGGAACACGGCTTCTGTCT 59.628 57.895 0.00 0.00 0.00 3.41
47 48 0.951040 CTGGGAACACGGCTTCTGTC 60.951 60.000 0.00 0.00 35.60 3.51
48 49 1.071471 CTGGGAACACGGCTTCTGT 59.929 57.895 0.00 0.00 35.60 3.41
49 50 0.671781 CTCTGGGAACACGGCTTCTG 60.672 60.000 0.00 0.00 35.60 3.02
50 51 1.674057 CTCTGGGAACACGGCTTCT 59.326 57.895 0.00 0.00 35.60 2.85
51 52 1.376037 CCTCTGGGAACACGGCTTC 60.376 63.158 0.00 0.00 35.60 3.86
52 53 2.113243 GACCTCTGGGAACACGGCTT 62.113 60.000 0.00 0.00 35.60 4.35
53 54 2.526873 ACCTCTGGGAACACGGCT 60.527 61.111 0.00 0.00 35.60 5.52
54 55 2.047179 GACCTCTGGGAACACGGC 60.047 66.667 0.00 0.00 35.60 5.68
55 56 2.261671 CGACCTCTGGGAACACGG 59.738 66.667 0.00 0.00 35.60 4.94
56 57 1.080705 GTCGACCTCTGGGAACACG 60.081 63.158 3.51 0.00 35.60 4.49
57 58 1.080705 CGTCGACCTCTGGGAACAC 60.081 63.158 10.58 0.00 35.60 3.32
93 94 2.047274 CGTCATCGGTGCCCAGTT 60.047 61.111 0.00 0.00 0.00 3.16
143 148 1.743394 CTTTTCCTCGGTATTGGTGGC 59.257 52.381 0.00 0.00 0.00 5.01
157 162 3.444034 GGCCTCTCATGGTTTACTTTTCC 59.556 47.826 0.00 0.00 0.00 3.13
166 171 2.671070 CGGTGGCCTCTCATGGTT 59.329 61.111 3.32 0.00 0.00 3.67
173 178 4.711949 CAAGCAGCGGTGGCCTCT 62.712 66.667 17.54 1.32 41.24 3.69
181 186 1.070445 CCTAGGATCCAAGCAGCGG 59.930 63.158 15.82 0.00 0.00 5.52
184 189 1.202746 GCCTTCCTAGGATCCAAGCAG 60.203 57.143 13.57 4.78 45.05 4.24
192 197 0.988678 GGTGGTGGCCTTCCTAGGAT 60.989 60.000 13.57 0.00 45.05 3.24
196 201 0.548926 TGATGGTGGTGGCCTTCCTA 60.549 55.000 16.22 5.90 33.29 2.94
203 208 2.436646 CGAGGTGATGGTGGTGGC 60.437 66.667 0.00 0.00 0.00 5.01
225 230 2.194271 GCAAGTCACCGACTATGTAGC 58.806 52.381 0.00 0.00 42.59 3.58
228 233 0.249398 GGGCAAGTCACCGACTATGT 59.751 55.000 0.00 0.00 42.59 2.29
277 282 3.516949 TTTTGGGGCGGGGGAAGAC 62.517 63.158 0.00 0.00 0.00 3.01
279 284 2.514516 ATCTTTTGGGGCGGGGGAAG 62.515 60.000 0.00 0.00 0.00 3.46
280 285 2.553330 ATCTTTTGGGGCGGGGGAA 61.553 57.895 0.00 0.00 0.00 3.97
296 301 1.936547 GAAGCACGAATCAGGGTCATC 59.063 52.381 0.00 0.00 0.00 2.92
297 302 1.278985 TGAAGCACGAATCAGGGTCAT 59.721 47.619 0.00 0.00 0.00 3.06
298 303 0.684535 TGAAGCACGAATCAGGGTCA 59.315 50.000 0.00 0.00 0.00 4.02
316 321 2.028130 AGAGTAGTCTCCGCTTCCATG 58.972 52.381 0.00 0.00 41.26 3.66
319 324 2.159212 GGAAAGAGTAGTCTCCGCTTCC 60.159 54.545 11.34 11.34 41.26 3.46
323 328 1.406180 GAGGGAAAGAGTAGTCTCCGC 59.594 57.143 0.00 4.93 41.26 5.54
365 370 1.078918 CATCTGACCGCCTTGAGCA 60.079 57.895 0.00 0.00 44.04 4.26
371 376 1.220206 CAAGCTCATCTGACCGCCT 59.780 57.895 0.00 0.00 0.00 5.52
374 379 1.703438 GCAGCAAGCTCATCTGACCG 61.703 60.000 12.31 0.00 41.15 4.79
376 381 1.703438 CGGCAGCAAGCTCATCTGAC 61.703 60.000 12.31 9.14 44.79 3.51
377 382 1.449070 CGGCAGCAAGCTCATCTGA 60.449 57.895 12.31 0.00 44.79 3.27
379 384 2.124819 CCGGCAGCAAGCTCATCT 60.125 61.111 0.00 0.00 44.79 2.90
380 385 2.124983 TCCGGCAGCAAGCTCATC 60.125 61.111 0.00 0.00 44.79 2.92
381 386 2.437359 GTCCGGCAGCAAGCTCAT 60.437 61.111 0.00 0.00 44.79 2.90
393 398 0.107456 CAGATCTTCCCCATGTCCGG 59.893 60.000 0.00 0.00 0.00 5.14
404 409 4.314121 CGGATCCCATTTCTCAGATCTTC 58.686 47.826 6.06 0.00 36.27 2.87
409 414 0.469917 GGCGGATCCCATTTCTCAGA 59.530 55.000 6.06 0.00 0.00 3.27
413 423 1.447643 CGAGGCGGATCCCATTTCT 59.552 57.895 6.06 0.00 34.51 2.52
434 444 6.596888 TGTTATTCTATCGTAGTCTATCCCCG 59.403 42.308 0.00 0.00 0.00 5.73
447 457 6.487960 CGGACTAGGCTATGTTATTCTATCG 58.512 44.000 0.00 0.00 0.00 2.92
449 459 5.952947 AGCGGACTAGGCTATGTTATTCTAT 59.047 40.000 0.00 0.00 39.39 1.98
465 475 7.408756 TTTCCAACTAAAGTATAGCGGACTA 57.591 36.000 0.00 0.00 0.00 2.59
466 476 5.927281 TTCCAACTAAAGTATAGCGGACT 57.073 39.130 0.00 0.00 0.00 3.85
467 477 6.537660 ACATTTCCAACTAAAGTATAGCGGAC 59.462 38.462 0.00 0.00 0.00 4.79
468 478 6.646267 ACATTTCCAACTAAAGTATAGCGGA 58.354 36.000 0.00 0.00 0.00 5.54
469 479 6.761714 AGACATTTCCAACTAAAGTATAGCGG 59.238 38.462 0.00 0.00 0.00 5.52
470 480 7.772332 AGACATTTCCAACTAAAGTATAGCG 57.228 36.000 0.00 0.00 0.00 4.26
495 506 4.217983 ACCGGGCGAAAACATTTACATTTA 59.782 37.500 6.32 0.00 0.00 1.40
530 541 0.591170 AACTCGTGCAAATCGGTTGG 59.409 50.000 0.00 0.00 37.73 3.77
537 548 1.001815 CCGGACAAAACTCGTGCAAAT 60.002 47.619 0.00 0.00 0.00 2.32
547 558 5.107645 GCATACATTTCAAACCGGACAAAAC 60.108 40.000 9.46 0.00 0.00 2.43
551 562 2.160615 CGCATACATTTCAAACCGGACA 59.839 45.455 9.46 0.00 0.00 4.02
592 612 0.034337 GGACCAGTTAGCGAACACCA 59.966 55.000 12.42 0.00 38.10 4.17
617 637 1.566703 TGGGGTCCAGTCAGTGAAAAA 59.433 47.619 0.00 0.00 0.00 1.94
618 638 1.217916 TGGGGTCCAGTCAGTGAAAA 58.782 50.000 0.00 0.00 0.00 2.29
620 640 0.692476 CATGGGGTCCAGTCAGTGAA 59.308 55.000 0.00 0.00 36.75 3.18
621 641 1.841302 GCATGGGGTCCAGTCAGTGA 61.841 60.000 0.00 0.00 36.75 3.41
622 642 1.377725 GCATGGGGTCCAGTCAGTG 60.378 63.158 0.00 0.00 36.75 3.66
623 643 2.959484 CGCATGGGGTCCAGTCAGT 61.959 63.158 0.89 0.00 36.75 3.41
624 644 2.124983 CGCATGGGGTCCAGTCAG 60.125 66.667 0.89 0.00 36.75 3.51
625 645 3.716195 CCGCATGGGGTCCAGTCA 61.716 66.667 20.38 0.00 36.75 3.41
635 655 1.601759 GTCCATGGATCCCGCATGG 60.602 63.158 19.62 19.32 39.96 3.66
636 656 1.962822 CGTCCATGGATCCCGCATG 60.963 63.158 19.62 6.43 0.00 4.06
637 657 2.427320 CGTCCATGGATCCCGCAT 59.573 61.111 19.62 0.00 0.00 4.73
638 658 3.860605 CCGTCCATGGATCCCGCA 61.861 66.667 19.62 0.00 0.00 5.69
639 659 2.883828 ATCCGTCCATGGATCCCGC 61.884 63.158 19.62 3.17 45.80 6.13
640 660 1.004560 CATCCGTCCATGGATCCCG 60.005 63.158 19.62 16.68 45.80 5.14
641 661 0.764890 TTCATCCGTCCATGGATCCC 59.235 55.000 19.62 4.01 45.80 3.85
642 662 1.417890 ACTTCATCCGTCCATGGATCC 59.582 52.381 19.62 4.20 45.80 3.36
643 663 2.158900 ACACTTCATCCGTCCATGGATC 60.159 50.000 19.62 10.80 45.80 3.36
645 665 1.207089 GACACTTCATCCGTCCATGGA 59.793 52.381 11.44 11.44 43.58 3.41
646 666 1.656652 GACACTTCATCCGTCCATGG 58.343 55.000 4.97 4.97 0.00 3.66
647 667 1.656652 GGACACTTCATCCGTCCATG 58.343 55.000 2.98 0.00 46.98 3.66
654 674 3.522553 CTCTAAACCGGACACTTCATCC 58.477 50.000 9.46 0.00 0.00 3.51
655 675 3.056035 ACCTCTAAACCGGACACTTCATC 60.056 47.826 9.46 0.00 0.00 2.92
656 676 2.904434 ACCTCTAAACCGGACACTTCAT 59.096 45.455 9.46 0.00 0.00 2.57
657 677 2.298163 GACCTCTAAACCGGACACTTCA 59.702 50.000 9.46 0.00 0.00 3.02
658 678 2.298163 TGACCTCTAAACCGGACACTTC 59.702 50.000 9.46 0.00 0.00 3.01
659 679 2.299297 CTGACCTCTAAACCGGACACTT 59.701 50.000 9.46 0.00 0.00 3.16
660 680 1.893801 CTGACCTCTAAACCGGACACT 59.106 52.381 9.46 0.00 0.00 3.55
665 685 0.037605 AACGCTGACCTCTAAACCGG 60.038 55.000 0.00 0.00 0.00 5.28
683 703 3.197766 CACACTAGTTAGGGCATCTCCAA 59.802 47.826 0.00 0.00 36.21 3.53
686 706 4.473477 AACACACTAGTTAGGGCATCTC 57.527 45.455 0.00 0.00 0.00 2.75
694 714 7.519002 GTGCCTTCATTAAACACACTAGTTAG 58.481 38.462 0.00 0.00 0.00 2.34
696 716 5.049680 CGTGCCTTCATTAAACACACTAGTT 60.050 40.000 0.00 0.00 0.00 2.24
697 717 4.451096 CGTGCCTTCATTAAACACACTAGT 59.549 41.667 0.00 0.00 0.00 2.57
737 761 1.681793 TCTAGAGTTGTGCCGCCTATC 59.318 52.381 0.00 0.00 0.00 2.08
762 788 4.643387 GCTGGGCGGTGGTGTTCT 62.643 66.667 0.00 0.00 0.00 3.01
773 799 0.530870 CTAAGCGTTCTAGGCTGGGC 60.531 60.000 0.00 0.00 38.53 5.36
776 802 1.565305 CTGCTAAGCGTTCTAGGCTG 58.435 55.000 0.00 0.00 38.53 4.85
777 803 0.179097 GCTGCTAAGCGTTCTAGGCT 60.179 55.000 0.00 0.00 41.64 4.58
778 804 2.302478 GCTGCTAAGCGTTCTAGGC 58.698 57.895 0.00 0.00 40.27 3.93
788 814 4.063689 CAGGGTTCATATCTGCTGCTAAG 58.936 47.826 0.00 0.00 0.00 2.18
789 815 3.181451 CCAGGGTTCATATCTGCTGCTAA 60.181 47.826 0.00 0.00 0.00 3.09
790 816 2.369860 CCAGGGTTCATATCTGCTGCTA 59.630 50.000 0.00 0.00 0.00 3.49
791 817 1.142465 CCAGGGTTCATATCTGCTGCT 59.858 52.381 0.00 0.00 0.00 4.24
792 818 1.141657 TCCAGGGTTCATATCTGCTGC 59.858 52.381 0.00 0.00 0.00 5.25
805 831 1.080498 TGGTAGAATCAGGTCCAGGGT 59.920 52.381 0.00 0.00 0.00 4.34
822 848 2.832129 ACGTATGAGTGTCCAGATTGGT 59.168 45.455 0.00 0.00 39.03 3.67
955 1011 1.834263 GCTGTAGGATTCAGGGACAGT 59.166 52.381 0.00 0.00 39.75 3.55
976 1032 1.271934 CAACGGATGGCCACAATTGAA 59.728 47.619 8.16 0.00 0.00 2.69
978 1034 0.737019 GCAACGGATGGCCACAATTG 60.737 55.000 8.16 12.04 0.00 2.32
1054 1110 2.045047 AGAAGAGGGACAGGGATGAGAA 59.955 50.000 0.00 0.00 0.00 2.87
1216 1272 7.920151 GCATTTACATGACATAATTAAGTGCCA 59.080 33.333 0.00 0.00 32.29 4.92
1238 1294 6.566141 TCAACATGATGATTGAATTCGCATT 58.434 32.000 0.83 0.00 31.95 3.56
1258 1314 2.744202 CTGCCAGTGTAAGGACATCAAC 59.256 50.000 0.00 0.00 38.04 3.18
1329 1385 1.098050 GTGGGACTGAATGTGGATGC 58.902 55.000 0.00 0.00 0.00 3.91
1343 1399 3.625897 CAGTGCGTGGGAGTGGGA 61.626 66.667 0.00 0.00 0.00 4.37
1344 1400 2.579657 TACAGTGCGTGGGAGTGGG 61.580 63.158 0.00 0.00 0.00 4.61
1345 1401 1.374252 GTACAGTGCGTGGGAGTGG 60.374 63.158 0.00 0.00 0.00 4.00
1346 1402 1.733041 CGTACAGTGCGTGGGAGTG 60.733 63.158 2.39 0.00 0.00 3.51
1347 1403 2.138656 GACGTACAGTGCGTGGGAGT 62.139 60.000 22.15 0.00 43.04 3.85
1348 1404 1.443872 GACGTACAGTGCGTGGGAG 60.444 63.158 22.15 0.00 43.04 4.30
1369 1425 2.296831 TTTTCGACGGTTCAGTGTGA 57.703 45.000 0.00 0.00 0.00 3.58
1399 1456 1.837439 TGGTCACTGATACATGGGGAC 59.163 52.381 0.00 0.00 0.00 4.46
1405 1462 4.079253 GGTTTGGTTGGTCACTGATACAT 58.921 43.478 0.00 0.00 0.00 2.29
1412 1469 3.655615 TGTAAGGTTTGGTTGGTCACT 57.344 42.857 0.00 0.00 0.00 3.41
1415 1472 9.581099 CAATATTTATGTAAGGTTTGGTTGGTC 57.419 33.333 0.00 0.00 0.00 4.02
1590 1657 5.459536 TTTCTCATCGCTAGTAGCATCAT 57.540 39.130 21.70 7.58 42.58 2.45
1654 1721 2.110967 CAGCAAGCCGGATGTGAGG 61.111 63.158 5.05 0.00 0.00 3.86
1732 1800 6.060788 AGCTGAGATTTGTTCAGAGAAAACT 58.939 36.000 6.44 0.00 43.75 2.66
1750 1818 2.344950 CTTGTGCTTCCAGTAGCTGAG 58.655 52.381 0.00 0.00 41.76 3.35
1752 1820 0.801251 GCTTGTGCTTCCAGTAGCTG 59.199 55.000 0.00 0.00 41.76 4.24
1754 1822 0.606401 TGGCTTGTGCTTCCAGTAGC 60.606 55.000 0.00 0.00 41.59 3.58
1755 1823 2.119801 ATGGCTTGTGCTTCCAGTAG 57.880 50.000 0.00 0.00 39.59 2.57
1756 1824 2.040278 AGAATGGCTTGTGCTTCCAGTA 59.960 45.455 0.00 0.00 39.59 2.74
1757 1825 1.202976 AGAATGGCTTGTGCTTCCAGT 60.203 47.619 0.00 0.00 39.59 4.00
1758 1826 1.201647 CAGAATGGCTTGTGCTTCCAG 59.798 52.381 0.00 0.00 39.59 3.86
1760 1828 1.538047 TCAGAATGGCTTGTGCTTCC 58.462 50.000 0.00 0.00 39.59 3.46
1762 1830 1.271656 GCTTCAGAATGGCTTGTGCTT 59.728 47.619 0.00 0.00 39.59 3.91
1764 1832 0.599558 TGCTTCAGAATGGCTTGTGC 59.400 50.000 0.00 0.00 36.16 4.57
1765 1833 2.876091 CATGCTTCAGAATGGCTTGTG 58.124 47.619 3.35 0.00 36.16 3.33
1766 1834 1.203994 GCATGCTTCAGAATGGCTTGT 59.796 47.619 11.37 0.00 33.28 3.16
1767 1835 1.203758 TGCATGCTTCAGAATGGCTTG 59.796 47.619 20.33 6.10 36.16 4.01
1768 1836 1.552578 TGCATGCTTCAGAATGGCTT 58.447 45.000 20.33 0.00 36.16 4.35
1777 1845 5.710513 ACTACTGAATTTTGCATGCTTCA 57.289 34.783 20.33 18.04 0.00 3.02
1778 1846 5.734498 CGTACTACTGAATTTTGCATGCTTC 59.266 40.000 20.33 14.32 0.00 3.86
1779 1847 5.181245 ACGTACTACTGAATTTTGCATGCTT 59.819 36.000 20.33 4.16 0.00 3.91
1800 1868 4.418973 TCTGCCATACTAGAGAGTACGT 57.581 45.455 0.00 0.00 41.01 3.57
1801 1869 4.575236 TGTTCTGCCATACTAGAGAGTACG 59.425 45.833 0.00 0.00 41.01 3.67
1802 1870 6.294286 GGATGTTCTGCCATACTAGAGAGTAC 60.294 46.154 0.00 0.00 41.01 2.73
1803 1871 5.770663 GGATGTTCTGCCATACTAGAGAGTA 59.229 44.000 0.00 0.00 42.41 2.59
1856 1924 0.443869 GCAACGTGTGATGCCTGTAG 59.556 55.000 0.00 0.00 37.89 2.74
1996 2067 5.464168 CAGAAAAGCACAGGATTAGTTTGG 58.536 41.667 0.00 0.00 0.00 3.28
2003 2074 2.555757 GACTGCAGAAAAGCACAGGATT 59.444 45.455 23.35 0.00 40.11 3.01
2008 2079 4.389890 AAATTGACTGCAGAAAAGCACA 57.610 36.364 23.35 5.74 40.11 4.57
2104 2175 3.244561 GGAATCTCTGAAATCGGGCCATA 60.245 47.826 4.39 0.00 0.00 2.74
2135 2206 3.266636 TGGACATACCTGTGTATTTGCG 58.733 45.455 0.00 0.00 35.46 4.85
2201 2272 7.706159 TGCATCTTAACCTAAAGTATTGCATG 58.294 34.615 0.00 0.00 35.32 4.06
2220 2291 7.944729 ATTTACCTGAACAAATACTGCATCT 57.055 32.000 0.00 0.00 0.00 2.90
2256 2327 8.809159 TGAAATGTTCAGAAAAATATGCGAAA 57.191 26.923 0.00 0.00 34.08 3.46
2268 2339 9.300681 ACAAGATCCTTTATGAAATGTTCAGAA 57.699 29.630 0.00 0.00 43.98 3.02
2269 2340 8.733458 CACAAGATCCTTTATGAAATGTTCAGA 58.267 33.333 0.00 0.00 43.98 3.27
2349 2420 9.394767 TGCCTTGCATGTATCGAATAATATAAT 57.605 29.630 0.00 0.00 31.71 1.28
2370 2445 1.604604 AGTAATTGTGTGCGTGCCTT 58.395 45.000 0.00 0.00 0.00 4.35
2371 2446 1.266718 CAAGTAATTGTGTGCGTGCCT 59.733 47.619 0.00 0.00 0.00 4.75
2372 2447 1.001815 ACAAGTAATTGTGTGCGTGCC 60.002 47.619 7.92 0.00 33.23 5.01
2378 2453 7.009440 CGTAGATTGTGACAAGTAATTGTGTG 58.991 38.462 14.13 0.00 34.90 3.82
2402 2477 3.562557 AGGGCAGTTTACACAAAGTAACG 59.437 43.478 0.00 0.00 42.19 3.18
2405 2480 7.826918 AAAATAGGGCAGTTTACACAAAGTA 57.173 32.000 0.00 0.00 0.00 2.24
2406 2481 6.724893 AAAATAGGGCAGTTTACACAAAGT 57.275 33.333 0.00 0.00 0.00 2.66
2440 2515 2.975851 GACATCACAAAAAGAGCGCAAG 59.024 45.455 11.47 0.00 43.44 4.01
2454 2529 6.430451 CCAGTTAAGTTGAAAGTGACATCAC 58.570 40.000 3.72 3.72 46.77 3.06
2470 2545 1.000843 GTTTGCCAAGGCCCAGTTAAG 59.999 52.381 8.89 0.00 41.09 1.85
2496 2604 3.684788 ACTTTCACTAGCTAATGCCGTTG 59.315 43.478 0.00 0.00 40.80 4.10
2502 2610 4.762289 AGGGGACTTTCACTAGCTAATG 57.238 45.455 0.00 0.00 37.44 1.90
2551 2659 8.470002 GGAAGTAAGGATCTAACGGTAAAAGTA 58.530 37.037 0.00 0.00 0.00 2.24
2552 2660 7.326454 GGAAGTAAGGATCTAACGGTAAAAGT 58.674 38.462 0.00 0.00 0.00 2.66
2553 2661 6.760298 GGGAAGTAAGGATCTAACGGTAAAAG 59.240 42.308 0.00 0.00 0.00 2.27
2554 2662 6.441604 AGGGAAGTAAGGATCTAACGGTAAAA 59.558 38.462 0.00 0.00 0.00 1.52
2557 2665 4.891756 CAGGGAAGTAAGGATCTAACGGTA 59.108 45.833 0.00 0.00 0.00 4.02
2558 2666 3.705072 CAGGGAAGTAAGGATCTAACGGT 59.295 47.826 0.00 0.00 0.00 4.83
2560 2668 3.958798 TCCAGGGAAGTAAGGATCTAACG 59.041 47.826 0.00 0.00 0.00 3.18
2685 2793 8.909923 TGATATCGAAAGTAGACATGAAGGTTA 58.090 33.333 0.00 0.00 0.00 2.85
2688 2796 6.865726 CCTGATATCGAAAGTAGACATGAAGG 59.134 42.308 0.00 0.00 0.00 3.46
2808 2916 5.364446 TGCAAATGAATATCTCCTGCCATTT 59.636 36.000 0.00 0.00 35.41 2.32
2811 2919 3.887110 CTGCAAATGAATATCTCCTGCCA 59.113 43.478 0.00 0.00 0.00 4.92
2843 2951 4.931661 TCGAAAGTACAGTTGGAGAACT 57.068 40.909 0.00 0.00 43.63 3.01
2891 3000 3.270877 CTGCGAACAAATAGCCCTTACT 58.729 45.455 0.00 0.00 0.00 2.24
2990 3103 2.124312 AGAGGCCGGGGGTAAACT 59.876 61.111 2.18 0.00 0.00 2.66
3014 3127 1.341209 AGATGGCTGCATGCATCATTG 59.659 47.619 26.74 16.01 45.15 2.82
3083 3198 1.444119 TTTTGCTTCGCTCCGCTTGT 61.444 50.000 0.00 0.00 0.00 3.16
3109 3229 4.154015 TGATTGTCAGCATGTACTTTTCCG 59.846 41.667 0.00 0.00 37.40 4.30
3136 3256 6.375455 CCTTATCCTACATATTACCGTACCGT 59.625 42.308 0.00 0.00 0.00 4.83
3292 3412 0.317479 GCTACCGCTTGGATCCGTAT 59.683 55.000 7.39 0.00 36.26 3.06
3362 3483 3.203716 GGGATGGAACTGTCGGAATTAC 58.796 50.000 0.00 0.00 0.00 1.89
3364 3485 1.633432 TGGGATGGAACTGTCGGAATT 59.367 47.619 0.00 0.00 0.00 2.17
3401 3526 0.596600 GCGGCTCGTATTCGGATTGA 60.597 55.000 0.00 0.00 37.69 2.57
3449 3575 2.552315 ACATTGAGCCGTTGTTTCGAAT 59.448 40.909 0.00 0.00 0.00 3.34
3453 3579 3.042887 GTTGACATTGAGCCGTTGTTTC 58.957 45.455 0.00 0.00 0.00 2.78
3462 3588 1.271597 ACCCTCCAGTTGACATTGAGC 60.272 52.381 0.00 0.00 0.00 4.26
3493 3619 5.698545 GCTTTGGAGAACGATTCATATAGCT 59.301 40.000 0.00 0.00 0.00 3.32
3583 3710 2.108168 GTGATGGGTAGGTAGCTCACA 58.892 52.381 0.00 0.00 32.50 3.58
3588 3715 2.089600 AGAGGTGATGGGTAGGTAGC 57.910 55.000 0.00 0.00 0.00 3.58
3602 3729 8.772250 TCATCAAGGACAATCTAATTAAGAGGT 58.228 33.333 0.00 0.00 37.74 3.85
3615 3742 7.341805 AGCAAGTAATACTCATCAAGGACAAT 58.658 34.615 0.00 0.00 0.00 2.71
3625 3752 3.871594 GTCCGCAAGCAAGTAATACTCAT 59.128 43.478 0.00 0.00 0.00 2.90
3670 3798 3.265489 TGGAGGATTAAGGTTCCCTTGT 58.735 45.455 5.78 0.00 44.44 3.16
3749 3877 6.675026 AGCTAAAAATGGAGTTTTTACGGTC 58.325 36.000 0.00 0.00 45.63 4.79
3761 3889 6.624861 CGCAATGGAAACTAGCTAAAAATGGA 60.625 38.462 0.00 0.00 0.00 3.41
3787 3915 1.066858 TCTCTGACCAACCAGATTCGC 60.067 52.381 0.00 0.00 41.79 4.70
3865 3993 0.312729 TCAGTTCAGACGTGCGCTAA 59.687 50.000 9.73 0.00 0.00 3.09
3967 4099 2.419620 GAGAGGCGCCCTTAGCTC 59.580 66.667 26.15 17.88 40.39 4.09
3968 4100 2.299727 TAGGAGAGGCGCCCTTAGCT 62.300 60.000 26.15 13.10 40.39 3.32
4004 4136 4.178540 GCAATGGGATGTCAACAAGATTG 58.821 43.478 0.00 0.00 0.00 2.67
4055 4187 4.202326 GGGCTTATGAGGACGAAGGATTTA 60.202 45.833 0.00 0.00 0.00 1.40
4123 4255 8.502387 GCAATAAATATTTGCAGTCCAAAACAA 58.498 29.630 11.05 0.00 45.80 2.83
4323 4455 0.459237 AGATCGCAGTTCTTCTGGCG 60.459 55.000 0.00 0.00 43.78 5.69
4335 4467 5.702622 CGACTTGATTTCTTTAGATCGCA 57.297 39.130 0.00 0.00 0.00 5.10
4337 4469 5.957910 AGCGACTTGATTTCTTTAGATCG 57.042 39.130 0.00 0.00 0.00 3.69
4930 5062 2.158971 ACAAATGTTGCCCTGGAAACAC 60.159 45.455 11.97 0.00 45.38 3.32
5082 5216 5.047306 CCAGAGTATCAGTAGTGTGTCCAAA 60.047 44.000 0.00 0.00 37.82 3.28
5090 5224 2.692557 AGCTGCCAGAGTATCAGTAGTG 59.307 50.000 0.00 0.00 37.82 2.74
5091 5225 3.025322 AGCTGCCAGAGTATCAGTAGT 57.975 47.619 0.00 0.00 37.82 2.73
5092 5226 3.382865 TGAAGCTGCCAGAGTATCAGTAG 59.617 47.826 0.00 0.00 37.82 2.57
5093 5227 3.365472 TGAAGCTGCCAGAGTATCAGTA 58.635 45.455 0.00 0.00 37.82 2.74
5094 5228 2.168106 CTGAAGCTGCCAGAGTATCAGT 59.832 50.000 10.03 0.00 37.82 3.41
5095 5229 2.483363 CCTGAAGCTGCCAGAGTATCAG 60.483 54.545 15.64 8.28 37.82 2.90
5096 5230 1.483827 CCTGAAGCTGCCAGAGTATCA 59.516 52.381 15.64 0.00 37.82 2.15
5097 5231 1.202627 CCCTGAAGCTGCCAGAGTATC 60.203 57.143 15.64 0.00 33.65 2.24
5098 5232 0.835941 CCCTGAAGCTGCCAGAGTAT 59.164 55.000 15.64 0.00 33.65 2.12
5099 5233 0.252239 TCCCTGAAGCTGCCAGAGTA 60.252 55.000 15.64 1.21 33.65 2.59
5100 5234 1.537397 TCCCTGAAGCTGCCAGAGT 60.537 57.895 15.64 0.00 33.65 3.24
5101 5235 1.078567 GTCCCTGAAGCTGCCAGAG 60.079 63.158 15.64 5.03 33.65 3.35
5102 5236 1.834856 CTGTCCCTGAAGCTGCCAGA 61.835 60.000 15.64 0.00 33.65 3.86
5103 5237 1.376942 CTGTCCCTGAAGCTGCCAG 60.377 63.158 8.89 8.89 0.00 4.85
5104 5238 0.835971 TACTGTCCCTGAAGCTGCCA 60.836 55.000 0.00 0.00 0.00 4.92
5105 5239 0.391793 GTACTGTCCCTGAAGCTGCC 60.392 60.000 0.00 0.00 0.00 4.85
5106 5240 0.610687 AGTACTGTCCCTGAAGCTGC 59.389 55.000 0.00 0.00 0.00 5.25
5107 5241 2.354203 GGAAGTACTGTCCCTGAAGCTG 60.354 54.545 0.00 0.00 0.00 4.24
5108 5242 1.903183 GGAAGTACTGTCCCTGAAGCT 59.097 52.381 0.00 0.00 0.00 3.74
5109 5243 2.388310 GGAAGTACTGTCCCTGAAGC 57.612 55.000 0.00 0.00 0.00 3.86
5116 5250 2.370849 TGTTCAAGGGGAAGTACTGTCC 59.629 50.000 12.94 12.94 35.82 4.02
5117 5251 3.323979 TCTGTTCAAGGGGAAGTACTGTC 59.676 47.826 0.00 0.00 35.82 3.51
5118 5252 3.314693 TCTGTTCAAGGGGAAGTACTGT 58.685 45.455 0.00 0.00 35.82 3.55
5119 5253 4.202367 ACTTCTGTTCAAGGGGAAGTACTG 60.202 45.833 0.00 0.00 44.09 2.74
5120 5254 3.974642 ACTTCTGTTCAAGGGGAAGTACT 59.025 43.478 5.55 0.00 44.09 2.73
5121 5255 4.353383 ACTTCTGTTCAAGGGGAAGTAC 57.647 45.455 5.55 0.00 44.09 2.73
5175 5309 9.356433 GAGTCCAGTAAGAACTAAACATTCTAC 57.644 37.037 0.00 0.00 35.31 2.59
5281 5417 5.651172 TGACACAAGTAAAACAGTCATCG 57.349 39.130 0.00 0.00 31.72 3.84
5322 5458 1.805871 GCCAGAGTATCAGCAGCTCAC 60.806 57.143 0.00 0.00 37.82 3.51
5473 5618 5.507482 GCCTGAAAACCCTTAAGTTTCAGTC 60.507 44.000 27.95 20.18 39.00 3.51
5527 5672 8.774586 GTCTCGGCATAATTTTGTAATACATCT 58.225 33.333 0.00 0.00 0.00 2.90
5531 5683 6.851330 GCTGTCTCGGCATAATTTTGTAATAC 59.149 38.462 0.00 0.00 35.55 1.89
5534 5686 4.697828 TGCTGTCTCGGCATAATTTTGTAA 59.302 37.500 0.00 0.00 41.16 2.41
5705 5881 4.989797 GGAGATGACAGCTATGAACTGATG 59.010 45.833 0.00 0.00 38.55 3.07
5718 5894 0.312102 TAGATGCGCGGAGATGACAG 59.688 55.000 8.83 0.00 0.00 3.51
5728 5904 3.673746 TTTTCCTGAAATAGATGCGCG 57.326 42.857 0.00 0.00 0.00 6.86
5743 5919 9.072294 CAAAACATACGGAATTACTGATTTTCC 57.928 33.333 0.00 0.00 36.40 3.13
5798 5975 2.417586 TGCTTTGCATCATCAGTCTTCG 59.582 45.455 0.00 0.00 31.71 3.79
5880 6060 7.619050 TCTCTCTCTCTTATCATGTTGCTTTT 58.381 34.615 0.00 0.00 0.00 2.27
5887 6068 8.593945 AAAACTCTCTCTCTCTCTTATCATGT 57.406 34.615 0.00 0.00 0.00 3.21
5899 6080 6.665680 TGGTAATCTGCTAAAACTCTCTCTCT 59.334 38.462 0.00 0.00 0.00 3.10
5900 6081 6.754675 GTGGTAATCTGCTAAAACTCTCTCTC 59.245 42.308 0.00 0.00 0.00 3.20
5901 6082 6.439058 AGTGGTAATCTGCTAAAACTCTCTCT 59.561 38.462 0.00 0.00 0.00 3.10
5902 6083 6.533367 CAGTGGTAATCTGCTAAAACTCTCTC 59.467 42.308 0.00 0.00 0.00 3.20
5912 6095 7.564793 ACATTGTTATCAGTGGTAATCTGCTA 58.435 34.615 0.00 0.00 35.94 3.49
5957 6140 2.604299 TACCCGCAGCTAGCTCGAGA 62.604 60.000 27.24 14.85 42.61 4.04
6011 6194 7.665690 GGATACTTCTCATCTCTTGCATTCTA 58.334 38.462 0.00 0.00 0.00 2.10
6134 6322 2.425668 CCAAAAAGGACACCGAACAACT 59.574 45.455 0.00 0.00 41.22 3.16
6250 6439 7.284489 ACCTTACTTGCAGAAAATAACAACTCA 59.716 33.333 0.00 0.00 0.00 3.41
6339 6528 1.269831 ACTGAACCGTTCTGCTCTCAC 60.270 52.381 15.82 0.00 32.51 3.51
6551 6741 3.443588 GGAACACCCTGTGCCAAC 58.556 61.111 0.00 0.00 45.81 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.