Multiple sequence alignment - TraesCS7B01G255800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G255800 chr7B 100.000 4907 0 0 1 4907 474401963 474406869 0.000000e+00 9062
1 TraesCS7B01G255800 chr7D 94.881 2559 93 20 293 2835 451965997 451968533 0.000000e+00 3965
2 TraesCS7B01G255800 chr7D 89.729 1587 99 37 3100 4647 451968541 451970102 0.000000e+00 1969
3 TraesCS7B01G255800 chr7D 95.385 260 9 3 4649 4907 451970066 451970323 1.270000e-110 411
4 TraesCS7B01G255800 chr7A 89.250 2679 191 39 260 2883 545549343 545546707 0.000000e+00 3262
5 TraesCS7B01G255800 chr7A 88.661 829 56 17 3100 3920 545546372 545545574 0.000000e+00 976
6 TraesCS7B01G255800 chr7A 85.612 417 34 5 4426 4827 545545162 545544757 9.830000e-112 414
7 TraesCS7B01G255800 chr7A 96.400 250 9 0 2 251 598253169 598252920 3.530000e-111 412
8 TraesCS7B01G255800 chr7A 84.305 446 38 19 3977 4410 545545571 545545146 1.640000e-109 407
9 TraesCS7B01G255800 chr7A 87.603 242 21 6 2656 2896 706477749 706477982 6.260000e-69 272
10 TraesCS7B01G255800 chr4A 97.610 251 6 0 1 251 618461016 618461266 9.760000e-117 431
11 TraesCS7B01G255800 chr4A 87.190 242 22 6 2656 2896 38749000 38749233 2.910000e-67 267
12 TraesCS7B01G255800 chr2A 97.610 251 6 0 1 251 603684437 603684187 9.760000e-117 431
13 TraesCS7B01G255800 chr3B 97.211 251 7 0 1 251 777206132 777205882 4.540000e-115 425
14 TraesCS7B01G255800 chr3A 97.211 251 7 0 1 251 614224040 614223790 4.540000e-115 425
15 TraesCS7B01G255800 chr3A 96.813 251 8 0 1 251 1873917 1874167 2.110000e-113 420
16 TraesCS7B01G255800 chr5A 96.414 251 9 0 1 251 367068353 367068603 9.830000e-112 414
17 TraesCS7B01G255800 chr5A 96.016 251 10 0 1 251 75384844 75385094 4.570000e-110 409
18 TraesCS7B01G255800 chr6A 96.016 251 10 0 1 251 212329467 212329717 4.570000e-110 409
19 TraesCS7B01G255800 chr5B 86.939 245 22 7 2655 2899 54112488 54112254 2.910000e-67 267


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G255800 chr7B 474401963 474406869 4906 False 9062.00 9062 100.000000 1 4907 1 chr7B.!!$F1 4906
1 TraesCS7B01G255800 chr7D 451965997 451970323 4326 False 2115.00 3965 93.331667 293 4907 3 chr7D.!!$F1 4614
2 TraesCS7B01G255800 chr7A 545544757 545549343 4586 True 1264.75 3262 86.957000 260 4827 4 chr7A.!!$R2 4567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 369 0.040351 CCCCTGTGACAGAGGAGAGA 59.96 60.0 20.02 0.0 30.49 3.10 F
2168 2223 0.800012 GCGCTCATGGTAAAAACGGA 59.20 50.0 0.00 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2192 2247 0.104120 TATGGCCCGTCACAGAATCG 59.896 55.0 0.0 0.0 0.0 3.34 R
4073 4346 0.035458 CCCTCCACCTTCACACACTC 59.965 60.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.395519 CGGCTCAATTGGACCACA 57.604 55.556 15.25 0.00 0.00 4.17
18 19 2.639970 CGGCTCAATTGGACCACAA 58.360 52.632 15.25 0.00 44.54 3.33
19 20 0.523072 CGGCTCAATTGGACCACAAG 59.477 55.000 15.25 1.97 43.48 3.16
20 21 1.620822 GGCTCAATTGGACCACAAGT 58.379 50.000 5.42 0.00 43.48 3.16
21 22 1.963515 GGCTCAATTGGACCACAAGTT 59.036 47.619 5.42 0.00 43.48 2.66
22 23 2.365293 GGCTCAATTGGACCACAAGTTT 59.635 45.455 5.42 0.00 43.48 2.66
23 24 3.383761 GCTCAATTGGACCACAAGTTTG 58.616 45.455 5.42 0.00 43.48 2.93
24 25 3.799917 GCTCAATTGGACCACAAGTTTGG 60.800 47.826 5.42 3.42 43.48 3.28
25 26 2.697751 TCAATTGGACCACAAGTTTGGG 59.302 45.455 5.42 0.00 43.48 4.12
26 27 2.697751 CAATTGGACCACAAGTTTGGGA 59.302 45.455 0.00 0.00 43.48 4.37
27 28 2.065899 TTGGACCACAAGTTTGGGAG 57.934 50.000 0.00 0.00 41.49 4.30
28 29 1.217916 TGGACCACAAGTTTGGGAGA 58.782 50.000 0.00 0.00 41.49 3.71
29 30 1.780309 TGGACCACAAGTTTGGGAGAT 59.220 47.619 0.00 0.00 41.49 2.75
30 31 2.983192 TGGACCACAAGTTTGGGAGATA 59.017 45.455 0.00 0.00 41.49 1.98
31 32 3.396276 TGGACCACAAGTTTGGGAGATAA 59.604 43.478 0.00 0.00 41.49 1.75
32 33 4.044065 TGGACCACAAGTTTGGGAGATAAT 59.956 41.667 0.00 0.00 41.49 1.28
33 34 4.399303 GGACCACAAGTTTGGGAGATAATG 59.601 45.833 0.00 0.00 41.49 1.90
34 35 4.344104 ACCACAAGTTTGGGAGATAATGG 58.656 43.478 0.00 0.00 41.49 3.16
35 36 3.131046 CCACAAGTTTGGGAGATAATGGC 59.869 47.826 0.00 0.00 31.80 4.40
36 37 3.016736 ACAAGTTTGGGAGATAATGGCG 58.983 45.455 0.00 0.00 0.00 5.69
37 38 3.278574 CAAGTTTGGGAGATAATGGCGA 58.721 45.455 0.00 0.00 0.00 5.54
38 39 3.864789 AGTTTGGGAGATAATGGCGAT 57.135 42.857 0.00 0.00 0.00 4.58
39 40 3.744660 AGTTTGGGAGATAATGGCGATC 58.255 45.455 0.00 0.00 0.00 3.69
40 41 3.392616 AGTTTGGGAGATAATGGCGATCT 59.607 43.478 0.00 0.00 36.33 2.75
41 42 4.593206 AGTTTGGGAGATAATGGCGATCTA 59.407 41.667 0.00 0.00 33.71 1.98
42 43 5.071788 AGTTTGGGAGATAATGGCGATCTAA 59.928 40.000 0.00 0.00 33.71 2.10
43 44 5.762179 TTGGGAGATAATGGCGATCTAAT 57.238 39.130 0.00 0.00 33.71 1.73
44 45 6.867519 TTGGGAGATAATGGCGATCTAATA 57.132 37.500 0.00 0.00 33.71 0.98
45 46 7.437713 TTGGGAGATAATGGCGATCTAATAT 57.562 36.000 0.00 0.00 33.71 1.28
46 47 6.820335 TGGGAGATAATGGCGATCTAATATG 58.180 40.000 0.00 0.00 33.71 1.78
47 48 6.384015 TGGGAGATAATGGCGATCTAATATGT 59.616 38.462 0.00 0.00 33.71 2.29
48 49 7.092891 TGGGAGATAATGGCGATCTAATATGTT 60.093 37.037 0.00 0.00 33.71 2.71
49 50 7.225538 GGGAGATAATGGCGATCTAATATGTTG 59.774 40.741 0.00 0.00 33.71 3.33
50 51 7.225538 GGAGATAATGGCGATCTAATATGTTGG 59.774 40.741 0.00 0.00 33.71 3.77
51 52 6.540189 AGATAATGGCGATCTAATATGTTGGC 59.460 38.462 0.00 0.00 31.72 4.52
52 53 3.769739 TGGCGATCTAATATGTTGGCT 57.230 42.857 0.00 0.00 0.00 4.75
53 54 3.402110 TGGCGATCTAATATGTTGGCTG 58.598 45.455 0.00 0.00 0.00 4.85
54 55 3.070878 TGGCGATCTAATATGTTGGCTGA 59.929 43.478 0.00 0.00 0.00 4.26
55 56 4.256920 GGCGATCTAATATGTTGGCTGAT 58.743 43.478 0.00 0.00 0.00 2.90
56 57 4.093998 GGCGATCTAATATGTTGGCTGATG 59.906 45.833 0.00 0.00 0.00 3.07
57 58 4.692625 GCGATCTAATATGTTGGCTGATGT 59.307 41.667 0.00 0.00 0.00 3.06
58 59 5.390251 GCGATCTAATATGTTGGCTGATGTG 60.390 44.000 0.00 0.00 0.00 3.21
59 60 5.928264 CGATCTAATATGTTGGCTGATGTGA 59.072 40.000 0.00 0.00 0.00 3.58
60 61 6.128715 CGATCTAATATGTTGGCTGATGTGAC 60.129 42.308 0.00 0.00 0.00 3.67
61 62 5.368145 TCTAATATGTTGGCTGATGTGACC 58.632 41.667 0.00 0.00 0.00 4.02
62 63 2.022764 TATGTTGGCTGATGTGACCG 57.977 50.000 0.00 0.00 0.00 4.79
63 64 0.677731 ATGTTGGCTGATGTGACCGG 60.678 55.000 0.00 0.00 0.00 5.28
64 65 1.302511 GTTGGCTGATGTGACCGGT 60.303 57.895 6.92 6.92 0.00 5.28
65 66 0.889186 GTTGGCTGATGTGACCGGTT 60.889 55.000 9.42 0.00 0.00 4.44
66 67 0.179004 TTGGCTGATGTGACCGGTTT 60.179 50.000 9.42 0.00 0.00 3.27
67 68 0.179004 TGGCTGATGTGACCGGTTTT 60.179 50.000 9.42 0.00 0.00 2.43
68 69 0.958822 GGCTGATGTGACCGGTTTTT 59.041 50.000 9.42 0.00 0.00 1.94
69 70 2.156098 GGCTGATGTGACCGGTTTTTA 58.844 47.619 9.42 0.00 0.00 1.52
70 71 2.752903 GGCTGATGTGACCGGTTTTTAT 59.247 45.455 9.42 0.84 0.00 1.40
71 72 3.192633 GGCTGATGTGACCGGTTTTTATT 59.807 43.478 9.42 0.00 0.00 1.40
72 73 4.165779 GCTGATGTGACCGGTTTTTATTG 58.834 43.478 9.42 0.00 0.00 1.90
73 74 4.165779 CTGATGTGACCGGTTTTTATTGC 58.834 43.478 9.42 0.00 0.00 3.56
74 75 3.057174 TGATGTGACCGGTTTTTATTGCC 60.057 43.478 9.42 0.00 0.00 4.52
75 76 2.307768 TGTGACCGGTTTTTATTGCCA 58.692 42.857 9.42 0.00 0.00 4.92
76 77 2.034812 TGTGACCGGTTTTTATTGCCAC 59.965 45.455 9.42 9.55 0.00 5.01
77 78 2.034812 GTGACCGGTTTTTATTGCCACA 59.965 45.455 9.42 0.00 0.00 4.17
78 79 2.894126 TGACCGGTTTTTATTGCCACAT 59.106 40.909 9.42 0.00 0.00 3.21
79 80 3.249917 GACCGGTTTTTATTGCCACATG 58.750 45.455 9.42 0.00 0.00 3.21
80 81 2.630580 ACCGGTTTTTATTGCCACATGT 59.369 40.909 0.00 0.00 0.00 3.21
81 82 2.992543 CCGGTTTTTATTGCCACATGTG 59.007 45.455 19.31 19.31 0.00 3.21
82 83 2.411409 CGGTTTTTATTGCCACATGTGC 59.589 45.455 20.81 15.64 0.00 4.57
83 84 3.397482 GGTTTTTATTGCCACATGTGCA 58.603 40.909 20.81 17.98 36.84 4.57
84 85 3.186205 GGTTTTTATTGCCACATGTGCAC 59.814 43.478 20.81 10.75 38.72 4.57
85 86 4.057432 GTTTTTATTGCCACATGTGCACT 58.943 39.130 20.81 16.75 38.72 4.40
86 87 4.333913 TTTTATTGCCACATGTGCACTT 57.666 36.364 20.81 9.21 38.72 3.16
87 88 5.459536 TTTTATTGCCACATGTGCACTTA 57.540 34.783 20.81 12.33 38.72 2.24
88 89 4.433186 TTATTGCCACATGTGCACTTAC 57.567 40.909 20.81 5.45 38.72 2.34
89 90 1.685148 TTGCCACATGTGCACTTACA 58.315 45.000 20.81 7.88 38.72 2.41
90 91 1.685148 TGCCACATGTGCACTTACAA 58.315 45.000 20.81 0.00 33.69 2.41
91 92 2.027385 TGCCACATGTGCACTTACAAA 58.973 42.857 20.81 0.00 33.69 2.83
92 93 2.627221 TGCCACATGTGCACTTACAAAT 59.373 40.909 20.81 0.00 33.69 2.32
93 94 2.988493 GCCACATGTGCACTTACAAATG 59.012 45.455 20.81 14.11 40.52 2.32
94 95 3.577667 CCACATGTGCACTTACAAATGG 58.422 45.455 20.81 11.63 39.24 3.16
95 96 3.577667 CACATGTGCACTTACAAATGGG 58.422 45.455 19.41 9.40 39.24 4.00
96 97 3.255395 CACATGTGCACTTACAAATGGGA 59.745 43.478 19.41 0.00 40.58 4.37
97 98 3.255642 ACATGTGCACTTACAAATGGGAC 59.744 43.478 19.41 0.00 39.24 4.46
98 99 3.255395 CATGTGCACTTACAAATGGGACA 59.745 43.478 19.41 0.00 37.03 4.02
99 100 3.255642 ATGTGCACTTACAAATGGGACAC 59.744 43.478 19.41 0.00 35.79 3.67
100 101 5.232133 ATGTGCACTTACAAATGGGACACA 61.232 41.667 19.41 0.00 39.55 3.72
101 102 6.505213 ATGTGCACTTACAAATGGGACACAT 61.505 40.000 19.41 0.00 40.38 3.21
102 103 8.235154 ATGTGCACTTACAAATGGGACACATC 62.235 42.308 19.41 0.00 41.06 3.06
118 119 9.337396 TGGGACACATCTGTATAAAATTATGTC 57.663 33.333 0.00 0.00 0.00 3.06
119 120 9.337396 GGGACACATCTGTATAAAATTATGTCA 57.663 33.333 0.00 0.00 0.00 3.58
141 142 9.599866 TGTCAATGTATCCAAACACTAGATTAG 57.400 33.333 0.00 0.00 30.75 1.73
142 143 9.817809 GTCAATGTATCCAAACACTAGATTAGA 57.182 33.333 0.00 0.00 30.75 2.10
164 165 9.542462 TTAGATCTAGTTGCAATGTATTACACC 57.458 33.333 0.59 0.00 0.00 4.16
165 166 7.564793 AGATCTAGTTGCAATGTATTACACCA 58.435 34.615 0.59 0.00 0.00 4.17
166 167 8.046708 AGATCTAGTTGCAATGTATTACACCAA 58.953 33.333 0.59 1.16 0.00 3.67
167 168 8.752005 ATCTAGTTGCAATGTATTACACCAAT 57.248 30.769 0.59 0.00 0.00 3.16
168 169 9.845740 ATCTAGTTGCAATGTATTACACCAATA 57.154 29.630 0.59 0.00 0.00 1.90
169 170 9.845740 TCTAGTTGCAATGTATTACACCAATAT 57.154 29.630 0.59 0.97 31.78 1.28
170 171 9.882996 CTAGTTGCAATGTATTACACCAATATG 57.117 33.333 0.59 0.00 31.78 1.78
171 172 8.292444 AGTTGCAATGTATTACACCAATATGT 57.708 30.769 0.59 0.00 36.56 2.29
172 173 8.190122 AGTTGCAATGTATTACACCAATATGTG 58.810 33.333 0.59 0.00 42.05 3.21
184 185 4.517952 CCAATATGTGGTGTTTTCTGCA 57.482 40.909 0.00 0.00 43.20 4.41
185 186 4.880759 CCAATATGTGGTGTTTTCTGCAA 58.119 39.130 0.00 0.00 43.20 4.08
186 187 4.685628 CCAATATGTGGTGTTTTCTGCAAC 59.314 41.667 0.00 0.00 43.20 4.17
187 188 5.288015 CAATATGTGGTGTTTTCTGCAACA 58.712 37.500 0.00 0.00 34.15 3.33
188 189 3.883830 ATGTGGTGTTTTCTGCAACAA 57.116 38.095 0.00 0.00 38.40 2.83
189 190 3.667497 TGTGGTGTTTTCTGCAACAAA 57.333 38.095 0.00 0.00 38.40 2.83
190 191 3.321497 TGTGGTGTTTTCTGCAACAAAC 58.679 40.909 11.76 11.76 38.40 2.93
191 192 2.670905 GTGGTGTTTTCTGCAACAAACC 59.329 45.455 14.75 6.89 38.40 3.27
192 193 2.276201 GGTGTTTTCTGCAACAAACCC 58.724 47.619 14.75 12.12 38.40 4.11
193 194 2.354203 GGTGTTTTCTGCAACAAACCCA 60.354 45.455 14.75 2.93 38.40 4.51
194 195 3.530535 GTGTTTTCTGCAACAAACCCAT 58.469 40.909 14.75 0.00 38.40 4.00
195 196 4.442192 GGTGTTTTCTGCAACAAACCCATA 60.442 41.667 14.75 0.00 38.40 2.74
196 197 5.296748 GTGTTTTCTGCAACAAACCCATAT 58.703 37.500 14.75 0.00 38.40 1.78
197 198 6.451393 GTGTTTTCTGCAACAAACCCATATA 58.549 36.000 14.75 0.00 38.40 0.86
198 199 6.926272 GTGTTTTCTGCAACAAACCCATATAA 59.074 34.615 14.75 0.00 38.40 0.98
199 200 7.602265 GTGTTTTCTGCAACAAACCCATATAAT 59.398 33.333 14.75 0.00 38.40 1.28
200 201 8.807118 TGTTTTCTGCAACAAACCCATATAATA 58.193 29.630 14.75 0.00 33.60 0.98
201 202 9.301153 GTTTTCTGCAACAAACCCATATAATAG 57.699 33.333 8.59 0.00 0.00 1.73
202 203 7.581213 TTCTGCAACAAACCCATATAATAGG 57.419 36.000 0.00 0.00 0.00 2.57
203 204 6.668645 TCTGCAACAAACCCATATAATAGGT 58.331 36.000 0.00 0.00 34.60 3.08
204 205 6.545666 TCTGCAACAAACCCATATAATAGGTG 59.454 38.462 0.00 0.00 33.05 4.00
205 206 6.191315 TGCAACAAACCCATATAATAGGTGT 58.809 36.000 0.00 0.00 33.05 4.16
206 207 6.665680 TGCAACAAACCCATATAATAGGTGTT 59.334 34.615 0.00 0.00 33.05 3.32
207 208 7.147983 TGCAACAAACCCATATAATAGGTGTTC 60.148 37.037 0.00 0.00 33.05 3.18
208 209 7.068226 GCAACAAACCCATATAATAGGTGTTCT 59.932 37.037 0.00 0.00 33.05 3.01
209 210 8.405531 CAACAAACCCATATAATAGGTGTTCTG 58.594 37.037 0.00 0.00 33.05 3.02
210 211 7.639378 ACAAACCCATATAATAGGTGTTCTGT 58.361 34.615 0.00 0.00 33.05 3.41
211 212 7.556275 ACAAACCCATATAATAGGTGTTCTGTG 59.444 37.037 0.00 0.00 33.05 3.66
212 213 5.621193 ACCCATATAATAGGTGTTCTGTGC 58.379 41.667 0.00 0.00 30.97 4.57
213 214 5.131977 ACCCATATAATAGGTGTTCTGTGCA 59.868 40.000 0.00 0.00 30.97 4.57
214 215 6.061441 CCCATATAATAGGTGTTCTGTGCAA 58.939 40.000 0.00 0.00 0.00 4.08
215 216 6.017109 CCCATATAATAGGTGTTCTGTGCAAC 60.017 42.308 0.00 0.00 37.35 4.17
222 223 1.593196 TGTTCTGTGCAACACTAGCC 58.407 50.000 0.00 0.00 45.67 3.93
223 224 0.875059 GTTCTGTGCAACACTAGCCC 59.125 55.000 0.00 0.00 45.67 5.19
224 225 0.250727 TTCTGTGCAACACTAGCCCC 60.251 55.000 0.00 0.00 45.67 5.80
225 226 1.073025 CTGTGCAACACTAGCCCCA 59.927 57.895 0.00 0.00 45.67 4.96
226 227 0.537143 CTGTGCAACACTAGCCCCAA 60.537 55.000 0.00 0.00 45.67 4.12
227 228 0.112218 TGTGCAACACTAGCCCCAAT 59.888 50.000 0.00 0.00 45.67 3.16
228 229 1.352687 TGTGCAACACTAGCCCCAATA 59.647 47.619 0.00 0.00 45.67 1.90
229 230 2.224892 TGTGCAACACTAGCCCCAATAA 60.225 45.455 0.00 0.00 45.67 1.40
230 231 2.423538 GTGCAACACTAGCCCCAATAAG 59.576 50.000 0.00 0.00 36.32 1.73
231 232 2.041081 TGCAACACTAGCCCCAATAAGT 59.959 45.455 0.00 0.00 0.00 2.24
232 233 2.423538 GCAACACTAGCCCCAATAAGTG 59.576 50.000 0.00 0.00 43.90 3.16
233 234 3.872240 GCAACACTAGCCCCAATAAGTGA 60.872 47.826 8.21 0.00 41.47 3.41
234 235 4.526970 CAACACTAGCCCCAATAAGTGAT 58.473 43.478 8.21 0.00 41.47 3.06
235 236 4.156455 ACACTAGCCCCAATAAGTGATG 57.844 45.455 8.21 0.00 41.47 3.07
236 237 3.117888 ACACTAGCCCCAATAAGTGATGG 60.118 47.826 8.21 0.00 41.47 3.51
237 238 3.136443 CACTAGCCCCAATAAGTGATGGA 59.864 47.826 0.00 0.00 41.47 3.41
238 239 3.983410 ACTAGCCCCAATAAGTGATGGAT 59.017 43.478 0.00 0.00 39.12 3.41
239 240 3.979501 AGCCCCAATAAGTGATGGATT 57.020 42.857 0.00 0.00 39.12 3.01
240 241 5.610982 ACTAGCCCCAATAAGTGATGGATTA 59.389 40.000 0.00 0.00 39.12 1.75
241 242 5.605540 AGCCCCAATAAGTGATGGATTAT 57.394 39.130 0.00 0.00 39.12 1.28
242 243 5.327732 AGCCCCAATAAGTGATGGATTATG 58.672 41.667 0.00 0.00 39.12 1.90
243 244 4.082026 GCCCCAATAAGTGATGGATTATGC 60.082 45.833 0.00 0.00 39.12 3.14
244 245 5.078949 CCCCAATAAGTGATGGATTATGCA 58.921 41.667 0.00 0.00 39.12 3.96
245 246 5.539574 CCCCAATAAGTGATGGATTATGCAA 59.460 40.000 0.00 0.00 39.12 4.08
246 247 6.211986 CCCCAATAAGTGATGGATTATGCAAT 59.788 38.462 0.00 0.00 39.12 3.56
247 248 7.256404 CCCCAATAAGTGATGGATTATGCAATT 60.256 37.037 0.00 0.00 39.12 2.32
248 249 7.816031 CCCAATAAGTGATGGATTATGCAATTC 59.184 37.037 0.00 0.00 39.12 2.17
249 250 7.816031 CCAATAAGTGATGGATTATGCAATTCC 59.184 37.037 0.00 0.00 39.12 3.01
250 251 5.796424 AAGTGATGGATTATGCAATTCCC 57.204 39.130 9.65 1.91 0.00 3.97
251 252 4.154942 AGTGATGGATTATGCAATTCCCC 58.845 43.478 9.65 0.64 0.00 4.81
252 253 3.896888 GTGATGGATTATGCAATTCCCCA 59.103 43.478 9.65 5.77 0.00 4.96
253 254 4.344679 GTGATGGATTATGCAATTCCCCAA 59.655 41.667 9.65 0.00 0.00 4.12
254 255 5.012354 GTGATGGATTATGCAATTCCCCAAT 59.988 40.000 9.65 0.00 0.00 3.16
255 256 6.211184 GTGATGGATTATGCAATTCCCCAATA 59.789 38.462 9.65 0.00 0.00 1.90
256 257 6.961131 TGATGGATTATGCAATTCCCCAATAT 59.039 34.615 9.65 0.00 0.00 1.28
257 258 6.608539 TGGATTATGCAATTCCCCAATATG 57.391 37.500 9.65 0.00 0.00 1.78
258 259 6.083383 TGGATTATGCAATTCCCCAATATGT 58.917 36.000 9.65 0.00 0.00 2.29
286 287 3.112709 GGCAGAACGGTCACTCGC 61.113 66.667 1.87 0.00 0.00 5.03
287 288 2.355837 GCAGAACGGTCACTCGCA 60.356 61.111 1.87 0.00 0.00 5.10
288 289 2.658707 GCAGAACGGTCACTCGCAC 61.659 63.158 1.87 0.00 0.00 5.34
289 290 2.050351 AGAACGGTCACTCGCACG 60.050 61.111 1.87 0.00 0.00 5.34
327 328 4.984146 AGCTGGTCTCCTTTTAAAGTCT 57.016 40.909 3.91 0.00 0.00 3.24
365 368 0.252012 ACCCCTGTGACAGAGGAGAG 60.252 60.000 20.58 10.37 32.86 3.20
366 369 0.040351 CCCCTGTGACAGAGGAGAGA 59.960 60.000 20.02 0.00 30.49 3.10
373 376 3.063485 GTGACAGAGGAGAGAAAACAGC 58.937 50.000 0.00 0.00 0.00 4.40
526 540 1.272807 CCCCGAAAAGGTAGGTCTCA 58.727 55.000 0.00 0.00 38.74 3.27
530 544 2.165845 CCGAAAAGGTAGGTCTCATCGT 59.834 50.000 0.00 0.00 34.51 3.73
718 742 1.196012 CTCGAGCTTAGGAGGGGTTT 58.804 55.000 0.00 0.00 0.00 3.27
885 911 3.378112 TGCACTGTGCTTATGCTATTTCC 59.622 43.478 30.43 0.22 45.31 3.13
900 926 2.842208 TTTCCGAGCTGTGTTGTTTG 57.158 45.000 0.00 0.00 0.00 2.93
926 952 3.626028 ACCGTTGCTGATGTTTTTCTC 57.374 42.857 0.00 0.00 0.00 2.87
1242 1279 2.982130 GACACCATGTCCTCGGCT 59.018 61.111 0.00 0.00 41.37 5.52
1386 1423 2.088763 CATGCTCGTCGACACGCTT 61.089 57.895 21.78 15.15 46.28 4.68
1440 1477 3.795688 TTCAGGCAGAACTTCTCCATT 57.204 42.857 8.91 0.00 0.00 3.16
1512 1549 3.265791 GAACCATCTGCAGGTGAGTTAG 58.734 50.000 28.75 13.31 39.86 2.34
1526 1564 3.115892 TTAGCTGCCGCGGTTTCG 61.116 61.111 28.70 13.52 42.32 3.46
1548 1586 3.181474 GGAGGCGTAATAAGACTGCTCTT 60.181 47.826 0.00 0.00 40.13 2.85
1549 1587 4.045783 GAGGCGTAATAAGACTGCTCTTC 58.954 47.826 0.00 0.00 37.87 2.87
1652 1700 2.105821 AGGAGATGGTTTTGGTTCGACA 59.894 45.455 0.00 0.00 0.00 4.35
1707 1755 3.301070 GCCAAATGCAGGCCATCA 58.699 55.556 5.01 1.59 46.50 3.07
1740 1788 3.005791 TCCATGCTGGTATATCTCACACG 59.994 47.826 2.68 0.00 39.03 4.49
1752 1800 1.550524 TCTCACACGCTAGCATTTCCT 59.449 47.619 16.45 0.00 0.00 3.36
1756 1804 3.188460 TCACACGCTAGCATTTCCTTTTC 59.812 43.478 16.45 0.00 0.00 2.29
1870 1918 9.081997 TGTTTAACAAATGAATGTGAAAGTGAC 57.918 29.630 0.00 0.00 34.95 3.67
1965 2018 6.536582 GCAGAGCAGACTTTCAGTATTTGATA 59.463 38.462 0.00 0.00 35.27 2.15
1975 2028 6.544928 TTCAGTATTTGATACAGAGAGGCA 57.455 37.500 1.42 0.00 38.21 4.75
2089 2144 9.914131 ATAAGGAGTTGCTTTTCTATTGTTTTC 57.086 29.630 0.00 0.00 0.00 2.29
2093 2148 9.691362 GGAGTTGCTTTTCTATTGTTTTCATTA 57.309 29.630 0.00 0.00 0.00 1.90
2120 2175 4.704833 TCGTTGCTCTGCAGGGGC 62.705 66.667 17.16 19.10 40.61 5.80
2168 2223 0.800012 GCGCTCATGGTAAAAACGGA 59.200 50.000 0.00 0.00 0.00 4.69
2192 2247 1.687628 GTCGAGACTGGCATATACGC 58.312 55.000 0.00 0.00 0.00 4.42
2246 2301 4.679654 GCTACAAGGTTCAAATTTTGGTCG 59.320 41.667 9.18 0.00 0.00 4.79
2360 2435 8.830201 AGTCTGTCATCTATGCATTCTAATTC 57.170 34.615 3.54 0.00 0.00 2.17
2589 2666 3.398406 TGCACACACATACAGTACAAGG 58.602 45.455 0.00 0.00 0.00 3.61
2602 2679 9.109393 CATACAGTACAAGGTTGCAAGTATATT 57.891 33.333 0.00 0.00 0.00 1.28
2603 2680 7.611213 ACAGTACAAGGTTGCAAGTATATTC 57.389 36.000 0.00 0.00 0.00 1.75
2653 2731 5.343307 TCATATATATGATGCAGCCACGT 57.657 39.130 19.44 0.00 37.76 4.49
2799 2877 6.875948 TGCTTCTTGATTTGTAGTTAAGCA 57.124 33.333 0.00 0.00 44.04 3.91
2800 2878 7.452880 TGCTTCTTGATTTGTAGTTAAGCAT 57.547 32.000 0.00 0.00 42.10 3.79
2866 2947 1.492176 CACTCCATGGAGGTTGCCTAT 59.508 52.381 38.54 17.59 45.88 2.57
2868 2949 2.582636 ACTCCATGGAGGTTGCCTATTT 59.417 45.455 38.54 16.20 45.88 1.40
2883 2964 4.456911 TGCCTATTTCTTTCTGCTGTCAAG 59.543 41.667 0.00 0.00 0.00 3.02
2896 2977 3.885484 CTGTCAAGCATTCTTTCACGT 57.115 42.857 0.00 0.00 0.00 4.49
2897 2978 3.548587 CTGTCAAGCATTCTTTCACGTG 58.451 45.455 9.94 9.94 0.00 4.49
2898 2979 2.290367 TGTCAAGCATTCTTTCACGTGG 59.710 45.455 17.00 0.00 0.00 4.94
2899 2980 1.266718 TCAAGCATTCTTTCACGTGGC 59.733 47.619 17.00 9.19 0.00 5.01
2900 2981 1.001487 CAAGCATTCTTTCACGTGGCA 60.001 47.619 17.00 0.00 0.00 4.92
2901 2982 1.538047 AGCATTCTTTCACGTGGCAT 58.462 45.000 17.00 0.00 0.00 4.40
2902 2983 1.888512 AGCATTCTTTCACGTGGCATT 59.111 42.857 17.00 0.00 0.00 3.56
2903 2984 2.297033 AGCATTCTTTCACGTGGCATTT 59.703 40.909 17.00 0.00 0.00 2.32
2904 2985 2.663119 GCATTCTTTCACGTGGCATTTC 59.337 45.455 17.00 0.00 0.00 2.17
2905 2986 3.244976 CATTCTTTCACGTGGCATTTCC 58.755 45.455 17.00 0.00 0.00 3.13
2906 2987 1.974265 TCTTTCACGTGGCATTTCCA 58.026 45.000 17.00 0.00 44.18 3.53
2923 3004 8.004216 GGCATTTCCATCACAATTAAGTTGTCA 61.004 37.037 0.00 0.00 41.02 3.58
2938 3019 4.922206 AGTTGTCATGTTGTGGACCATAT 58.078 39.130 0.00 0.00 33.09 1.78
2950 3031 2.565841 GGACCATATCCTTGTGCAGAC 58.434 52.381 0.00 0.00 45.22 3.51
2985 3066 5.348179 GTGCACATAAAATGCTGTTAATGCA 59.652 36.000 13.17 8.24 43.77 3.96
2987 3068 5.499017 GCACATAAAATGCTGTTAATGCACG 60.499 40.000 8.01 0.00 43.59 5.34
2994 3075 2.616376 TGCTGTTAATGCACGACACTTT 59.384 40.909 0.00 0.00 35.31 2.66
2995 3076 3.226347 GCTGTTAATGCACGACACTTTC 58.774 45.455 0.00 0.00 0.00 2.62
3000 3081 5.219633 GTTAATGCACGACACTTTCCAAAT 58.780 37.500 0.00 0.00 0.00 2.32
3045 3212 5.073311 TCCTATGTGTCTGTTGCTAGAAC 57.927 43.478 0.00 0.00 0.00 3.01
3048 3215 5.349817 CCTATGTGTCTGTTGCTAGAACTTG 59.650 44.000 0.00 0.00 0.00 3.16
3064 3231 2.576615 ACTTGAGGAGCCAACTGTTTC 58.423 47.619 0.00 0.00 0.00 2.78
3065 3232 2.092429 ACTTGAGGAGCCAACTGTTTCA 60.092 45.455 0.00 0.00 0.00 2.69
3067 3234 2.575532 TGAGGAGCCAACTGTTTCAAG 58.424 47.619 0.00 0.00 0.00 3.02
3070 3237 3.217626 AGGAGCCAACTGTTTCAAGAAG 58.782 45.455 0.00 0.00 0.00 2.85
3071 3238 2.952310 GGAGCCAACTGTTTCAAGAAGT 59.048 45.455 0.00 0.00 0.00 3.01
3073 3240 4.578928 GGAGCCAACTGTTTCAAGAAGTTA 59.421 41.667 0.00 0.00 32.96 2.24
3076 3243 6.330278 AGCCAACTGTTTCAAGAAGTTAAAC 58.670 36.000 0.00 0.00 32.96 2.01
3087 3288 9.832445 TTTCAAGAAGTTAAACAGTCAGTCTAT 57.168 29.630 0.00 0.00 0.00 1.98
3181 3415 5.299279 CCCAACCTCAGCAAATATTATTCGT 59.701 40.000 0.00 0.00 0.00 3.85
3186 3420 8.732746 ACCTCAGCAAATATTATTCGTTAGTT 57.267 30.769 0.00 0.00 0.00 2.24
3187 3421 8.612619 ACCTCAGCAAATATTATTCGTTAGTTG 58.387 33.333 0.00 0.00 0.00 3.16
3188 3422 8.612619 CCTCAGCAAATATTATTCGTTAGTTGT 58.387 33.333 0.00 0.00 0.00 3.32
3206 3440 5.930135 AGTTGTCTCTCTAGCCTTTCAAAA 58.070 37.500 0.00 0.00 0.00 2.44
3349 3593 7.121315 GGAATCCTTTAATACAACTTGTCTGCT 59.879 37.037 0.00 0.00 0.00 4.24
3444 3690 1.060553 GCATGTGTCACGTGATAACCG 59.939 52.381 26.07 16.34 37.29 4.44
3449 3695 2.780014 GTGTCACGTGATAACCGTATCG 59.220 50.000 23.12 0.00 39.29 2.92
3467 3713 1.203052 TCGTCCGTTGGAGGATTACAC 59.797 52.381 4.23 0.00 40.97 2.90
3484 3730 8.352942 AGGATTACACATTCAGAAACAAAGAAC 58.647 33.333 0.00 0.00 0.00 3.01
3503 3749 6.610075 AGAACAATCATTTGGTAATTGGCT 57.390 33.333 0.00 0.00 37.15 4.75
3519 3765 1.371635 GCTTGCAAACCGCGAACAT 60.372 52.632 8.23 0.00 46.97 2.71
3542 3788 2.568956 TGAAACAGACCTAGAGCAGCAT 59.431 45.455 0.00 0.00 0.00 3.79
3562 3808 8.385858 GCAGCATAAAAGAAATGAGGAAAATTC 58.614 33.333 0.00 0.00 0.00 2.17
3585 3831 8.914328 TTCACATTTAATCAGTGCATGTTATG 57.086 30.769 0.00 0.00 33.44 1.90
3618 3864 1.003959 TACATCTGCAGCACCGCAA 60.004 52.632 9.47 0.00 42.45 4.85
3619 3865 1.298157 TACATCTGCAGCACCGCAAC 61.298 55.000 9.47 0.00 42.45 4.17
3620 3866 2.033141 ATCTGCAGCACCGCAACT 59.967 55.556 9.47 0.00 42.45 3.16
3621 3867 1.020861 CATCTGCAGCACCGCAACTA 61.021 55.000 9.47 0.00 42.45 2.24
3626 3872 1.499056 CAGCACCGCAACTAGCTTG 59.501 57.895 0.00 0.00 42.61 4.01
3633 3879 0.320771 CGCAACTAGCTTGACCCTGT 60.321 55.000 1.04 0.00 42.61 4.00
3702 3951 1.681793 GAACTGGCGAGCATAGTCCTA 59.318 52.381 0.00 0.00 0.00 2.94
3732 3981 2.426023 GAGTGTGGCCGGAACAGT 59.574 61.111 15.68 15.68 33.88 3.55
3870 4119 3.978193 ATGTGGCGGCCAAAGGGA 61.978 61.111 25.70 5.84 34.18 4.20
3897 4146 1.550130 CCCAGGAAACGGTGGCTCTA 61.550 60.000 0.00 0.00 31.85 2.43
3900 4149 0.831307 AGGAAACGGTGGCTCTATCC 59.169 55.000 0.00 0.00 0.00 2.59
3937 4186 0.669619 AACGGTTTGGTAAAAGCCCG 59.330 50.000 0.00 0.00 40.03 6.13
3967 4216 1.063166 CCCGTACGCGTTCTCTACC 59.937 63.158 20.78 0.00 36.15 3.18
4014 4263 9.849166 CACATACGTACATGGATGTGTATAATA 57.151 33.333 13.39 0.00 42.66 0.98
4035 4284 2.759839 AATCCCATCATGGCATCACA 57.240 45.000 0.00 0.00 35.79 3.58
4038 4287 2.101783 TCCCATCATGGCATCACAAAC 58.898 47.619 0.00 0.00 35.79 2.93
4129 4402 0.746063 AGAGCGATGAGAAGCAGAGG 59.254 55.000 0.00 0.00 35.48 3.69
4191 4469 1.156736 CGGTGTGATGGGAAGTGAAC 58.843 55.000 0.00 0.00 0.00 3.18
4192 4470 1.270839 CGGTGTGATGGGAAGTGAACT 60.271 52.381 0.00 0.00 0.00 3.01
4265 4548 0.103208 ATTACGAGCCCTTGAGAGCG 59.897 55.000 0.00 0.00 0.00 5.03
4273 4556 1.743252 CCTTGAGAGCGGCCTGTTC 60.743 63.158 0.00 1.95 0.00 3.18
4277 4560 2.067365 TGAGAGCGGCCTGTTCTATA 57.933 50.000 12.41 4.59 38.39 1.31
4353 4637 1.882623 GCTTCTTCTTGTCCTGGTTGG 59.117 52.381 0.00 0.00 37.10 3.77
4386 4670 3.393089 ACGTGCTGAAACTTGAGATCT 57.607 42.857 0.00 0.00 0.00 2.75
4387 4671 3.062763 ACGTGCTGAAACTTGAGATCTG 58.937 45.455 0.00 0.00 0.00 2.90
4391 4675 2.363683 CTGAAACTTGAGATCTGGGGC 58.636 52.381 0.00 0.00 0.00 5.80
4392 4676 1.988107 TGAAACTTGAGATCTGGGGCT 59.012 47.619 0.00 0.00 0.00 5.19
4393 4677 2.026822 TGAAACTTGAGATCTGGGGCTC 60.027 50.000 0.00 0.00 0.00 4.70
4394 4678 0.539051 AACTTGAGATCTGGGGCTCG 59.461 55.000 0.00 0.00 33.89 5.03
4395 4679 0.324738 ACTTGAGATCTGGGGCTCGA 60.325 55.000 0.00 0.00 33.89 4.04
4396 4680 0.388659 CTTGAGATCTGGGGCTCGAG 59.611 60.000 8.45 8.45 36.58 4.04
4397 4681 1.680522 TTGAGATCTGGGGCTCGAGC 61.681 60.000 29.38 29.38 41.14 5.03
4398 4682 1.832167 GAGATCTGGGGCTCGAGCT 60.832 63.158 34.46 15.89 41.70 4.09
4399 4683 2.086251 GAGATCTGGGGCTCGAGCTG 62.086 65.000 34.46 21.70 41.70 4.24
4400 4684 2.364842 ATCTGGGGCTCGAGCTGT 60.365 61.111 34.46 13.05 41.70 4.40
4401 4685 2.362329 GATCTGGGGCTCGAGCTGTC 62.362 65.000 34.46 23.41 41.70 3.51
4402 4686 4.154347 CTGGGGCTCGAGCTGTCC 62.154 72.222 34.46 29.69 41.70 4.02
4405 4689 4.500116 GGGCTCGAGCTGTCCGAC 62.500 72.222 34.46 17.20 41.70 4.79
4406 4690 4.500116 GGCTCGAGCTGTCCGACC 62.500 72.222 34.46 13.48 41.70 4.79
4407 4691 3.444805 GCTCGAGCTGTCCGACCT 61.445 66.667 29.88 0.00 38.21 3.85
4408 4692 2.995872 GCTCGAGCTGTCCGACCTT 61.996 63.158 29.88 0.00 38.21 3.50
4409 4693 1.153939 CTCGAGCTGTCCGACCTTG 60.154 63.158 0.00 0.00 32.18 3.61
4410 4694 1.867919 CTCGAGCTGTCCGACCTTGT 61.868 60.000 0.00 0.00 32.18 3.16
4411 4695 1.006102 CGAGCTGTCCGACCTTGTT 60.006 57.895 0.00 0.00 0.00 2.83
4412 4696 0.600255 CGAGCTGTCCGACCTTGTTT 60.600 55.000 0.00 0.00 0.00 2.83
4413 4697 1.594331 GAGCTGTCCGACCTTGTTTT 58.406 50.000 0.00 0.00 0.00 2.43
4414 4698 1.947456 GAGCTGTCCGACCTTGTTTTT 59.053 47.619 0.00 0.00 0.00 1.94
4415 4699 1.676006 AGCTGTCCGACCTTGTTTTTG 59.324 47.619 0.00 0.00 0.00 2.44
4416 4700 1.864029 GCTGTCCGACCTTGTTTTTGC 60.864 52.381 0.00 0.00 0.00 3.68
4417 4701 1.676006 CTGTCCGACCTTGTTTTTGCT 59.324 47.619 0.00 0.00 0.00 3.91
4418 4702 1.403679 TGTCCGACCTTGTTTTTGCTG 59.596 47.619 0.00 0.00 0.00 4.41
4419 4703 1.673920 GTCCGACCTTGTTTTTGCTGA 59.326 47.619 0.00 0.00 0.00 4.26
4420 4704 1.946768 TCCGACCTTGTTTTTGCTGAG 59.053 47.619 0.00 0.00 0.00 3.35
4421 4705 1.600413 CCGACCTTGTTTTTGCTGAGC 60.600 52.381 0.00 0.00 0.00 4.26
4422 4706 1.334869 CGACCTTGTTTTTGCTGAGCT 59.665 47.619 5.83 0.00 0.00 4.09
4423 4707 2.223572 CGACCTTGTTTTTGCTGAGCTT 60.224 45.455 5.83 0.00 0.00 3.74
4424 4708 3.375642 GACCTTGTTTTTGCTGAGCTTC 58.624 45.455 5.83 0.00 0.00 3.86
4553 4870 7.257722 CAATGACGGGTTCAGCTTATTTTATT 58.742 34.615 0.00 0.00 37.77 1.40
4557 4874 4.401202 CGGGTTCAGCTTATTTTATTGGGT 59.599 41.667 0.00 0.00 0.00 4.51
4616 4933 4.826556 AGAACATGCAGACTCCTAACTTC 58.173 43.478 0.00 0.00 0.00 3.01
4619 4936 4.353777 ACATGCAGACTCCTAACTTCCTA 58.646 43.478 0.00 0.00 0.00 2.94
4620 4937 4.777896 ACATGCAGACTCCTAACTTCCTAA 59.222 41.667 0.00 0.00 0.00 2.69
4627 4944 2.701423 CTCCTAACTTCCTAAGGGCTCC 59.299 54.545 0.00 0.00 0.00 4.70
4629 4946 3.116174 CCTAACTTCCTAAGGGCTCCTT 58.884 50.000 10.76 10.76 46.63 3.36
4737 5069 3.181480 CGCTCCCAGTTTCAAAGGAAAAA 60.181 43.478 0.00 0.00 44.18 1.94
4796 5128 4.935352 TCCTGTGTTTTCCAATTCCAAG 57.065 40.909 0.00 0.00 0.00 3.61
4837 5170 5.886609 TGACAGAATCCCTATGTTTTCCAA 58.113 37.500 0.00 0.00 0.00 3.53
4861 5194 2.210116 ACGTGTGTTTCTGGCTACTTG 58.790 47.619 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.523072 CTTGTGGTCCAATTGAGCCG 59.477 55.000 7.12 0.00 40.88 5.52
1 2 1.620822 ACTTGTGGTCCAATTGAGCC 58.379 50.000 7.12 9.03 40.88 4.70
2 3 3.383761 CAAACTTGTGGTCCAATTGAGC 58.616 45.455 7.12 3.72 41.96 4.26
3 4 3.243839 CCCAAACTTGTGGTCCAATTGAG 60.244 47.826 7.12 0.00 36.90 3.02
4 5 2.697751 CCCAAACTTGTGGTCCAATTGA 59.302 45.455 7.12 0.00 36.90 2.57
5 6 2.697751 TCCCAAACTTGTGGTCCAATTG 59.302 45.455 0.00 0.00 36.90 2.32
6 7 2.965147 CTCCCAAACTTGTGGTCCAATT 59.035 45.455 0.00 0.00 36.90 2.32
7 8 2.176798 TCTCCCAAACTTGTGGTCCAAT 59.823 45.455 0.00 0.00 36.90 3.16
8 9 1.566703 TCTCCCAAACTTGTGGTCCAA 59.433 47.619 0.00 0.00 36.90 3.53
9 10 1.217916 TCTCCCAAACTTGTGGTCCA 58.782 50.000 0.00 0.00 36.90 4.02
10 11 2.586648 ATCTCCCAAACTTGTGGTCC 57.413 50.000 0.00 0.00 36.90 4.46
11 12 4.399303 CCATTATCTCCCAAACTTGTGGTC 59.601 45.833 0.00 0.00 36.90 4.02
12 13 4.344104 CCATTATCTCCCAAACTTGTGGT 58.656 43.478 0.00 0.00 36.90 4.16
13 14 3.131046 GCCATTATCTCCCAAACTTGTGG 59.869 47.826 0.00 0.00 38.51 4.17
14 15 3.181497 CGCCATTATCTCCCAAACTTGTG 60.181 47.826 0.00 0.00 0.00 3.33
15 16 3.016736 CGCCATTATCTCCCAAACTTGT 58.983 45.455 0.00 0.00 0.00 3.16
16 17 3.278574 TCGCCATTATCTCCCAAACTTG 58.721 45.455 0.00 0.00 0.00 3.16
17 18 3.644966 TCGCCATTATCTCCCAAACTT 57.355 42.857 0.00 0.00 0.00 2.66
18 19 3.392616 AGATCGCCATTATCTCCCAAACT 59.607 43.478 0.00 0.00 0.00 2.66
19 20 3.744660 AGATCGCCATTATCTCCCAAAC 58.255 45.455 0.00 0.00 0.00 2.93
20 21 5.560722 TTAGATCGCCATTATCTCCCAAA 57.439 39.130 0.00 0.00 35.36 3.28
21 22 5.762179 ATTAGATCGCCATTATCTCCCAA 57.238 39.130 0.00 0.00 35.36 4.12
22 23 6.384015 ACATATTAGATCGCCATTATCTCCCA 59.616 38.462 0.00 0.00 35.36 4.37
23 24 6.821388 ACATATTAGATCGCCATTATCTCCC 58.179 40.000 0.00 0.00 35.36 4.30
24 25 7.225538 CCAACATATTAGATCGCCATTATCTCC 59.774 40.741 0.00 0.00 35.36 3.71
25 26 7.254590 GCCAACATATTAGATCGCCATTATCTC 60.255 40.741 0.00 0.00 35.36 2.75
26 27 6.540189 GCCAACATATTAGATCGCCATTATCT 59.460 38.462 0.00 0.00 37.46 1.98
27 28 6.540189 AGCCAACATATTAGATCGCCATTATC 59.460 38.462 0.00 0.00 0.00 1.75
28 29 6.317140 CAGCCAACATATTAGATCGCCATTAT 59.683 38.462 0.00 0.00 0.00 1.28
29 30 5.643348 CAGCCAACATATTAGATCGCCATTA 59.357 40.000 0.00 0.00 0.00 1.90
30 31 4.456911 CAGCCAACATATTAGATCGCCATT 59.543 41.667 0.00 0.00 0.00 3.16
31 32 4.005650 CAGCCAACATATTAGATCGCCAT 58.994 43.478 0.00 0.00 0.00 4.40
32 33 3.070878 TCAGCCAACATATTAGATCGCCA 59.929 43.478 0.00 0.00 0.00 5.69
33 34 3.664107 TCAGCCAACATATTAGATCGCC 58.336 45.455 0.00 0.00 0.00 5.54
34 35 4.692625 ACATCAGCCAACATATTAGATCGC 59.307 41.667 0.00 0.00 0.00 4.58
35 36 5.928264 TCACATCAGCCAACATATTAGATCG 59.072 40.000 0.00 0.00 0.00 3.69
36 37 6.148480 GGTCACATCAGCCAACATATTAGATC 59.852 42.308 0.00 0.00 0.00 2.75
37 38 6.000219 GGTCACATCAGCCAACATATTAGAT 59.000 40.000 0.00 0.00 0.00 1.98
38 39 5.368145 GGTCACATCAGCCAACATATTAGA 58.632 41.667 0.00 0.00 0.00 2.10
39 40 4.212004 CGGTCACATCAGCCAACATATTAG 59.788 45.833 0.00 0.00 0.00 1.73
40 41 4.126437 CGGTCACATCAGCCAACATATTA 58.874 43.478 0.00 0.00 0.00 0.98
41 42 2.945008 CGGTCACATCAGCCAACATATT 59.055 45.455 0.00 0.00 0.00 1.28
42 43 2.564771 CGGTCACATCAGCCAACATAT 58.435 47.619 0.00 0.00 0.00 1.78
43 44 1.406751 CCGGTCACATCAGCCAACATA 60.407 52.381 0.00 0.00 0.00 2.29
44 45 0.677731 CCGGTCACATCAGCCAACAT 60.678 55.000 0.00 0.00 0.00 2.71
45 46 1.302431 CCGGTCACATCAGCCAACA 60.302 57.895 0.00 0.00 0.00 3.33
46 47 0.889186 AACCGGTCACATCAGCCAAC 60.889 55.000 8.04 0.00 0.00 3.77
47 48 0.179004 AAACCGGTCACATCAGCCAA 60.179 50.000 8.04 0.00 0.00 4.52
48 49 0.179004 AAAACCGGTCACATCAGCCA 60.179 50.000 8.04 0.00 0.00 4.75
49 50 0.958822 AAAAACCGGTCACATCAGCC 59.041 50.000 8.04 0.00 0.00 4.85
50 51 4.165779 CAATAAAAACCGGTCACATCAGC 58.834 43.478 8.04 0.00 0.00 4.26
51 52 4.165779 GCAATAAAAACCGGTCACATCAG 58.834 43.478 8.04 0.00 0.00 2.90
52 53 3.057174 GGCAATAAAAACCGGTCACATCA 60.057 43.478 8.04 0.00 0.00 3.07
53 54 3.057174 TGGCAATAAAAACCGGTCACATC 60.057 43.478 8.04 0.00 0.00 3.06
54 55 2.894126 TGGCAATAAAAACCGGTCACAT 59.106 40.909 8.04 0.00 0.00 3.21
55 56 2.034812 GTGGCAATAAAAACCGGTCACA 59.965 45.455 8.04 0.00 34.42 3.58
56 57 2.034812 TGTGGCAATAAAAACCGGTCAC 59.965 45.455 8.04 9.06 34.82 3.67
57 58 2.307768 TGTGGCAATAAAAACCGGTCA 58.692 42.857 8.04 0.00 0.00 4.02
58 59 3.249917 CATGTGGCAATAAAAACCGGTC 58.750 45.455 8.04 0.00 0.00 4.79
59 60 2.630580 ACATGTGGCAATAAAAACCGGT 59.369 40.909 0.00 0.00 0.00 5.28
60 61 2.992543 CACATGTGGCAATAAAAACCGG 59.007 45.455 18.51 0.00 0.00 5.28
61 62 2.411409 GCACATGTGGCAATAAAAACCG 59.589 45.455 26.55 0.00 0.00 4.44
62 63 3.186205 GTGCACATGTGGCAATAAAAACC 59.814 43.478 26.55 6.37 43.91 3.27
63 64 4.057432 AGTGCACATGTGGCAATAAAAAC 58.943 39.130 26.55 11.04 43.91 2.43
64 65 4.333913 AGTGCACATGTGGCAATAAAAA 57.666 36.364 26.55 0.00 43.91 1.94
65 66 4.333913 AAGTGCACATGTGGCAATAAAA 57.666 36.364 26.55 0.52 43.91 1.52
66 67 4.279420 TGTAAGTGCACATGTGGCAATAAA 59.721 37.500 26.55 13.12 43.91 1.40
67 68 3.823304 TGTAAGTGCACATGTGGCAATAA 59.177 39.130 26.55 10.87 43.91 1.40
68 69 3.416156 TGTAAGTGCACATGTGGCAATA 58.584 40.909 26.55 16.57 43.91 1.90
69 70 2.237643 TGTAAGTGCACATGTGGCAAT 58.762 42.857 26.55 19.81 43.91 3.56
70 71 1.685148 TGTAAGTGCACATGTGGCAA 58.315 45.000 26.55 8.21 43.91 4.52
71 72 1.685148 TTGTAAGTGCACATGTGGCA 58.315 45.000 26.55 20.67 39.32 4.92
72 73 2.791383 TTTGTAAGTGCACATGTGGC 57.209 45.000 26.55 18.47 0.00 5.01
73 74 3.577667 CCATTTGTAAGTGCACATGTGG 58.422 45.455 26.55 12.46 31.27 4.17
74 75 3.255395 TCCCATTTGTAAGTGCACATGTG 59.745 43.478 21.83 21.83 0.00 3.21
75 76 3.255642 GTCCCATTTGTAAGTGCACATGT 59.744 43.478 21.04 6.27 0.00 3.21
76 77 3.255395 TGTCCCATTTGTAAGTGCACATG 59.745 43.478 21.04 12.31 0.00 3.21
77 78 3.255642 GTGTCCCATTTGTAAGTGCACAT 59.744 43.478 21.04 10.23 0.00 3.21
78 79 2.621055 GTGTCCCATTTGTAAGTGCACA 59.379 45.455 21.04 0.00 0.00 4.57
79 80 2.621055 TGTGTCCCATTTGTAAGTGCAC 59.379 45.455 9.40 9.40 0.00 4.57
80 81 2.937519 TGTGTCCCATTTGTAAGTGCA 58.062 42.857 0.00 0.00 0.00 4.57
81 82 3.758554 AGATGTGTCCCATTTGTAAGTGC 59.241 43.478 0.00 0.00 32.56 4.40
82 83 4.761739 ACAGATGTGTCCCATTTGTAAGTG 59.238 41.667 0.00 0.00 44.58 3.16
83 84 4.985538 ACAGATGTGTCCCATTTGTAAGT 58.014 39.130 0.00 0.00 44.58 2.24
91 92 9.866655 ACATAATTTTATACAGATGTGTCCCAT 57.133 29.630 0.00 0.00 38.19 4.00
92 93 9.337396 GACATAATTTTATACAGATGTGTCCCA 57.663 33.333 0.00 0.00 38.19 4.37
93 94 9.337396 TGACATAATTTTATACAGATGTGTCCC 57.663 33.333 0.00 0.00 38.19 4.46
138 139 9.542462 GGTGTAATACATTGCAACTAGATCTAA 57.458 33.333 0.00 0.00 37.17 2.10
139 140 8.700973 TGGTGTAATACATTGCAACTAGATCTA 58.299 33.333 0.00 1.69 40.20 1.98
140 141 7.564793 TGGTGTAATACATTGCAACTAGATCT 58.435 34.615 0.00 0.00 40.20 2.75
141 142 7.786178 TGGTGTAATACATTGCAACTAGATC 57.214 36.000 0.00 0.00 40.20 2.75
142 143 8.752005 ATTGGTGTAATACATTGCAACTAGAT 57.248 30.769 0.00 0.00 40.20 1.98
143 144 9.845740 ATATTGGTGTAATACATTGCAACTAGA 57.154 29.630 0.00 0.57 40.20 2.43
144 145 9.882996 CATATTGGTGTAATACATTGCAACTAG 57.117 33.333 0.00 0.00 40.20 2.57
145 146 9.402320 ACATATTGGTGTAATACATTGCAACTA 57.598 29.630 0.00 2.81 40.20 2.24
146 147 8.190122 CACATATTGGTGTAATACATTGCAACT 58.810 33.333 0.00 0.00 40.20 3.16
147 148 7.434897 CCACATATTGGTGTAATACATTGCAAC 59.565 37.037 0.00 1.57 41.10 4.17
148 149 7.487484 CCACATATTGGTGTAATACATTGCAA 58.513 34.615 0.00 0.00 41.10 4.08
149 150 7.036996 CCACATATTGGTGTAATACATTGCA 57.963 36.000 0.00 0.00 41.10 4.08
164 165 5.288015 TGTTGCAGAAAACACCACATATTG 58.712 37.500 0.00 0.00 35.16 1.90
165 166 5.528043 TGTTGCAGAAAACACCACATATT 57.472 34.783 0.00 0.00 35.16 1.28
166 167 5.528043 TTGTTGCAGAAAACACCACATAT 57.472 34.783 0.00 0.00 39.70 1.78
167 168 4.991153 TTGTTGCAGAAAACACCACATA 57.009 36.364 0.00 0.00 39.70 2.29
168 169 3.883830 TTGTTGCAGAAAACACCACAT 57.116 38.095 0.00 0.00 39.70 3.21
169 170 3.321497 GTTTGTTGCAGAAAACACCACA 58.679 40.909 16.98 0.47 39.70 4.17
170 171 2.670905 GGTTTGTTGCAGAAAACACCAC 59.329 45.455 21.08 8.28 39.70 4.16
171 172 2.354203 GGGTTTGTTGCAGAAAACACCA 60.354 45.455 21.08 0.00 39.70 4.17
172 173 2.276201 GGGTTTGTTGCAGAAAACACC 58.724 47.619 21.08 16.85 39.70 4.16
173 174 2.966050 TGGGTTTGTTGCAGAAAACAC 58.034 42.857 21.08 19.26 39.70 3.32
174 175 3.902881 ATGGGTTTGTTGCAGAAAACA 57.097 38.095 21.08 6.73 37.89 2.83
175 176 9.301153 CTATTATATGGGTTTGTTGCAGAAAAC 57.699 33.333 14.68 14.68 35.89 2.43
176 177 8.474025 CCTATTATATGGGTTTGTTGCAGAAAA 58.526 33.333 0.00 0.00 0.00 2.29
177 178 7.617723 ACCTATTATATGGGTTTGTTGCAGAAA 59.382 33.333 0.00 0.00 41.93 2.52
178 179 7.068103 CACCTATTATATGGGTTTGTTGCAGAA 59.932 37.037 0.00 0.00 41.93 3.02
179 180 6.545666 CACCTATTATATGGGTTTGTTGCAGA 59.454 38.462 0.00 0.00 41.93 4.26
180 181 6.321181 ACACCTATTATATGGGTTTGTTGCAG 59.679 38.462 0.00 0.00 41.93 4.41
181 182 6.191315 ACACCTATTATATGGGTTTGTTGCA 58.809 36.000 0.00 0.00 41.93 4.08
182 183 6.709018 ACACCTATTATATGGGTTTGTTGC 57.291 37.500 0.00 0.00 41.93 4.17
183 184 8.405531 CAGAACACCTATTATATGGGTTTGTTG 58.594 37.037 0.00 0.00 41.93 3.33
184 185 8.113462 ACAGAACACCTATTATATGGGTTTGTT 58.887 33.333 0.00 0.00 41.93 2.83
185 186 7.556275 CACAGAACACCTATTATATGGGTTTGT 59.444 37.037 0.00 2.24 41.93 2.83
186 187 7.468631 GCACAGAACACCTATTATATGGGTTTG 60.469 40.741 0.00 1.76 41.93 2.93
187 188 6.546034 GCACAGAACACCTATTATATGGGTTT 59.454 38.462 0.00 0.00 41.93 3.27
188 189 6.062095 GCACAGAACACCTATTATATGGGTT 58.938 40.000 0.00 0.00 41.93 4.11
189 190 5.131977 TGCACAGAACACCTATTATATGGGT 59.868 40.000 0.00 0.00 45.98 4.51
190 191 5.620206 TGCACAGAACACCTATTATATGGG 58.380 41.667 0.00 0.00 36.88 4.00
191 192 6.542005 TGTTGCACAGAACACCTATTATATGG 59.458 38.462 0.00 0.00 30.75 2.74
192 193 7.409697 GTGTTGCACAGAACACCTATTATATG 58.590 38.462 7.98 0.00 46.74 1.78
193 194 7.553881 GTGTTGCACAGAACACCTATTATAT 57.446 36.000 7.98 0.00 46.74 0.86
194 195 6.978343 GTGTTGCACAGAACACCTATTATA 57.022 37.500 7.98 0.00 46.74 0.98
195 196 5.880054 GTGTTGCACAGAACACCTATTAT 57.120 39.130 7.98 0.00 46.74 1.28
203 204 1.593196 GGCTAGTGTTGCACAGAACA 58.407 50.000 2.01 0.00 36.74 3.18
204 205 0.875059 GGGCTAGTGTTGCACAGAAC 59.125 55.000 2.01 0.00 36.74 3.01
205 206 0.250727 GGGGCTAGTGTTGCACAGAA 60.251 55.000 2.01 0.00 36.74 3.02
206 207 1.374947 GGGGCTAGTGTTGCACAGA 59.625 57.895 2.01 0.00 36.74 3.41
207 208 0.537143 TTGGGGCTAGTGTTGCACAG 60.537 55.000 2.01 0.00 36.74 3.66
208 209 0.112218 ATTGGGGCTAGTGTTGCACA 59.888 50.000 2.01 0.00 36.74 4.57
209 210 2.122783 TATTGGGGCTAGTGTTGCAC 57.877 50.000 0.00 0.00 34.10 4.57
210 211 2.041081 ACTTATTGGGGCTAGTGTTGCA 59.959 45.455 0.00 0.00 0.00 4.08
211 212 2.423538 CACTTATTGGGGCTAGTGTTGC 59.576 50.000 0.00 0.00 34.68 4.17
212 213 3.950397 TCACTTATTGGGGCTAGTGTTG 58.050 45.455 0.00 0.00 39.16 3.33
213 214 4.526970 CATCACTTATTGGGGCTAGTGTT 58.473 43.478 0.00 0.00 39.16 3.32
214 215 3.117888 CCATCACTTATTGGGGCTAGTGT 60.118 47.826 0.00 0.00 39.16 3.55
215 216 3.136443 TCCATCACTTATTGGGGCTAGTG 59.864 47.826 0.00 0.00 39.41 2.74
216 217 3.393687 TCCATCACTTATTGGGGCTAGT 58.606 45.455 0.00 0.00 33.62 2.57
217 218 4.647564 ATCCATCACTTATTGGGGCTAG 57.352 45.455 0.00 0.00 33.62 3.42
218 219 6.484288 CATAATCCATCACTTATTGGGGCTA 58.516 40.000 0.00 0.00 33.62 3.93
219 220 3.979501 AATCCATCACTTATTGGGGCT 57.020 42.857 0.00 0.00 33.62 5.19
220 221 4.082026 GCATAATCCATCACTTATTGGGGC 60.082 45.833 0.00 0.00 33.62 5.80
221 222 5.078949 TGCATAATCCATCACTTATTGGGG 58.921 41.667 0.00 0.00 33.62 4.96
222 223 6.653526 TTGCATAATCCATCACTTATTGGG 57.346 37.500 0.00 0.00 33.62 4.12
223 224 7.816031 GGAATTGCATAATCCATCACTTATTGG 59.184 37.037 7.79 0.00 0.00 3.16
224 225 7.816031 GGGAATTGCATAATCCATCACTTATTG 59.184 37.037 13.14 0.00 0.00 1.90
225 226 7.038799 GGGGAATTGCATAATCCATCACTTATT 60.039 37.037 13.14 0.00 0.00 1.40
226 227 6.438425 GGGGAATTGCATAATCCATCACTTAT 59.562 38.462 13.14 0.00 0.00 1.73
227 228 5.774690 GGGGAATTGCATAATCCATCACTTA 59.225 40.000 13.14 0.00 0.00 2.24
228 229 4.590222 GGGGAATTGCATAATCCATCACTT 59.410 41.667 13.14 0.00 0.00 3.16
229 230 4.154942 GGGGAATTGCATAATCCATCACT 58.845 43.478 13.14 0.00 0.00 3.41
230 231 3.896888 TGGGGAATTGCATAATCCATCAC 59.103 43.478 13.14 3.55 0.00 3.06
231 232 4.196118 TGGGGAATTGCATAATCCATCA 57.804 40.909 13.14 8.75 0.00 3.07
232 233 5.750352 ATTGGGGAATTGCATAATCCATC 57.250 39.130 13.14 6.83 0.00 3.51
233 234 6.731919 ACATATTGGGGAATTGCATAATCCAT 59.268 34.615 13.14 3.52 0.00 3.41
234 235 6.014413 CACATATTGGGGAATTGCATAATCCA 60.014 38.462 13.14 4.28 0.00 3.41
235 236 6.400568 CACATATTGGGGAATTGCATAATCC 58.599 40.000 0.00 4.74 0.00 3.01
236 237 6.400568 CCACATATTGGGGAATTGCATAATC 58.599 40.000 0.00 0.00 46.22 1.75
237 238 6.363167 CCACATATTGGGGAATTGCATAAT 57.637 37.500 0.00 1.55 46.22 1.28
238 239 5.804944 CCACATATTGGGGAATTGCATAA 57.195 39.130 0.00 0.00 46.22 1.90
249 250 1.143684 CCCTGGACTCCACATATTGGG 59.856 57.143 3.90 3.90 46.92 4.12
251 252 1.477558 GCCCCTGGACTCCACATATTG 60.478 57.143 0.00 0.00 0.00 1.90
252 253 0.846693 GCCCCTGGACTCCACATATT 59.153 55.000 0.00 0.00 0.00 1.28
253 254 0.327480 TGCCCCTGGACTCCACATAT 60.327 55.000 0.00 0.00 0.00 1.78
254 255 0.982852 CTGCCCCTGGACTCCACATA 60.983 60.000 0.00 0.00 0.00 2.29
255 256 2.204136 TGCCCCTGGACTCCACAT 60.204 61.111 0.00 0.00 0.00 3.21
256 257 2.930019 CTGCCCCTGGACTCCACA 60.930 66.667 0.00 0.00 0.00 4.17
257 258 2.224159 TTCTGCCCCTGGACTCCAC 61.224 63.158 0.00 0.00 0.00 4.02
258 259 2.206900 TTCTGCCCCTGGACTCCA 59.793 61.111 0.00 0.00 0.00 3.86
365 368 4.038080 CCGGGTGCCGCTGTTTTC 62.038 66.667 0.00 0.00 46.86 2.29
486 494 0.459237 TAGGAGGAGACGACGACGAC 60.459 60.000 15.32 8.08 42.66 4.34
530 544 4.415332 GAACGAGTGCGGCGGAGA 62.415 66.667 9.78 0.00 43.17 3.71
718 742 3.587933 GCGCCAAACGGAACACCA 61.588 61.111 0.00 0.00 43.93 4.17
885 911 4.264380 GGTAAAAACAAACAACACAGCTCG 59.736 41.667 0.00 0.00 0.00 5.03
900 926 5.959652 AAAACATCAGCAACGGTAAAAAC 57.040 34.783 0.00 0.00 0.00 2.43
926 952 4.656041 GATCTCAGCCTGAATTTCAAACG 58.344 43.478 0.00 0.00 0.00 3.60
953 979 0.823460 AAATCAAATGGCCCGCGAAT 59.177 45.000 8.23 0.00 0.00 3.34
1228 1265 4.457496 CGCAGCCGAGGACATGGT 62.457 66.667 0.00 0.00 36.29 3.55
1293 1330 3.993614 GATGGTGGTGATGGCCGCA 62.994 63.158 0.00 0.00 40.61 5.69
1386 1423 1.149987 GTACAATCGTGCCGAAACCA 58.850 50.000 1.44 0.00 39.99 3.67
1440 1477 1.756690 GCCCCAATCTCGTAGGACCTA 60.757 57.143 0.00 0.00 0.00 3.08
1479 1516 1.202348 AGATGGTTCATGAGCGTCTCG 60.202 52.381 3.27 0.00 46.44 4.04
1526 1564 2.362717 AGAGCAGTCTTATTACGCCTCC 59.637 50.000 0.00 0.00 0.00 4.30
1548 1586 1.004277 GTCAGTGCCCAATAACCAGGA 59.996 52.381 0.00 0.00 0.00 3.86
1549 1587 1.271871 TGTCAGTGCCCAATAACCAGG 60.272 52.381 0.00 0.00 0.00 4.45
1652 1700 1.843368 TCCGTTTACTCATCTCCGGT 58.157 50.000 0.00 0.00 36.84 5.28
1707 1755 1.788258 CAGCATGGATAACGCTCGAT 58.212 50.000 0.00 0.00 32.48 3.59
1740 1788 4.808414 AAAGGGAAAAGGAAATGCTAGC 57.192 40.909 8.10 8.10 0.00 3.42
1870 1918 5.928839 ACATAAAGCAGACTATTATGGAGCG 59.071 40.000 14.45 0.00 39.95 5.03
1965 2018 5.045724 AGAGATTCAAAGAATGCCTCTCTGT 60.046 40.000 8.86 0.00 41.32 3.41
2028 2081 9.869757 ACAACTTTCAGCTAACAAAATTAAACT 57.130 25.926 0.00 0.00 0.00 2.66
2089 2144 6.616260 GCAGAGCAACGAAAACCAAATTAATG 60.616 38.462 0.00 0.00 0.00 1.90
2093 2148 3.123050 GCAGAGCAACGAAAACCAAATT 58.877 40.909 0.00 0.00 0.00 1.82
2105 2160 4.704833 TCGCCCCTGCAGAGCAAC 62.705 66.667 23.12 5.96 38.41 4.17
2120 2175 1.593006 GTGTTCACCTCAACAGTGTCG 59.407 52.381 0.00 0.00 36.94 4.35
2168 2223 0.459899 TATGCCAGTCTCGACGCATT 59.540 50.000 14.53 3.82 38.61 3.56
2192 2247 0.104120 TATGGCCCGTCACAGAATCG 59.896 55.000 0.00 0.00 0.00 3.34
2246 2301 4.629092 TGTGATTGATGCTATCTCTGAGC 58.371 43.478 0.00 0.00 40.53 4.26
2295 2350 6.985645 CAGAAGAAAAACAAATCCAATCCACA 59.014 34.615 0.00 0.00 0.00 4.17
2360 2435 6.386654 ACCCATTTACTGCAAATTTAACGAG 58.613 36.000 0.00 0.00 34.49 4.18
2653 2731 5.944135 TGATTGATATCAAGATCAGCCCAA 58.056 37.500 21.97 0.00 37.83 4.12
2839 2920 4.444876 GCAACCTCCATGGAGTGTATACAT 60.445 45.833 34.49 16.60 40.44 2.29
2843 2924 1.212935 GGCAACCTCCATGGAGTGTAT 59.787 52.381 34.49 17.74 40.44 2.29
2844 2925 0.618458 GGCAACCTCCATGGAGTGTA 59.382 55.000 34.49 5.43 40.44 2.90
2883 2964 2.352503 AATGCCACGTGAAAGAATGC 57.647 45.000 19.30 10.53 0.00 3.56
2884 2965 3.244976 GGAAATGCCACGTGAAAGAATG 58.755 45.455 19.30 0.00 36.34 2.67
2885 2966 2.890311 TGGAAATGCCACGTGAAAGAAT 59.110 40.909 19.30 0.00 43.33 2.40
2886 2967 2.302260 TGGAAATGCCACGTGAAAGAA 58.698 42.857 19.30 0.00 43.33 2.52
2887 2968 1.974265 TGGAAATGCCACGTGAAAGA 58.026 45.000 19.30 0.00 43.33 2.52
2894 2975 8.986261 CAACTTAATTGTGATGGAAATGCCACG 61.986 40.741 0.00 0.00 40.70 4.94
2895 2976 6.091169 CAACTTAATTGTGATGGAAATGCCAC 59.909 38.462 0.00 0.00 40.70 5.01
2896 2977 6.164876 CAACTTAATTGTGATGGAAATGCCA 58.835 36.000 0.00 0.00 41.53 4.92
2897 2978 6.651755 CAACTTAATTGTGATGGAAATGCC 57.348 37.500 0.00 0.00 33.20 4.40
2910 2991 5.920273 GGTCCACAACATGACAACTTAATTG 59.080 40.000 0.00 0.00 44.60 2.32
2911 2992 5.596361 TGGTCCACAACATGACAACTTAATT 59.404 36.000 0.00 0.00 33.09 1.40
2912 2993 5.136828 TGGTCCACAACATGACAACTTAAT 58.863 37.500 0.00 0.00 33.09 1.40
2938 3019 1.065491 ACACAACTGTCTGCACAAGGA 60.065 47.619 0.00 0.00 29.82 3.36
2946 3027 0.747644 TGCACCCACACAACTGTCTG 60.748 55.000 0.00 0.00 0.00 3.51
2947 3028 0.748005 GTGCACCCACACAACTGTCT 60.748 55.000 5.22 0.00 41.67 3.41
2948 3029 1.727467 GTGCACCCACACAACTGTC 59.273 57.895 5.22 0.00 41.67 3.51
2949 3030 3.918544 GTGCACCCACACAACTGT 58.081 55.556 5.22 0.00 41.67 3.55
2972 3053 2.426522 AGTGTCGTGCATTAACAGCAT 58.573 42.857 7.58 0.00 44.79 3.79
3011 3092 6.932400 ACAGACACATAGGAAATAAAACGTGA 59.068 34.615 0.00 0.00 0.00 4.35
3033 3200 2.999355 GCTCCTCAAGTTCTAGCAACAG 59.001 50.000 7.50 1.70 33.38 3.16
3045 3212 2.575532 TGAAACAGTTGGCTCCTCAAG 58.424 47.619 0.00 0.00 0.00 3.02
3048 3215 2.851195 TCTTGAAACAGTTGGCTCCTC 58.149 47.619 0.00 0.00 0.00 3.71
3096 3297 6.064717 GCATTAGTTCTGGGATATTTGGTCT 58.935 40.000 0.00 0.00 0.00 3.85
3181 3415 6.665992 TTGAAAGGCTAGAGAGACAACTAA 57.334 37.500 0.00 0.00 30.20 2.24
3186 3420 9.823647 CTTATATTTTGAAAGGCTAGAGAGACA 57.176 33.333 0.00 0.00 30.20 3.41
3187 3421 9.825109 ACTTATATTTTGAAAGGCTAGAGAGAC 57.175 33.333 0.00 0.00 0.00 3.36
3444 3690 2.884894 AATCCTCCAACGGACGATAC 57.115 50.000 0.00 0.00 35.52 2.24
3449 3695 2.754946 TGTGTAATCCTCCAACGGAC 57.245 50.000 0.00 0.00 35.52 4.79
3467 3713 9.858247 CAAATGATTGTTCTTTGTTTCTGAATG 57.142 29.630 0.00 0.00 0.00 2.67
3484 3730 4.936411 TGCAAGCCAATTACCAAATGATTG 59.064 37.500 0.00 0.00 34.73 2.67
3503 3749 0.593518 CACATGTTCGCGGTTTGCAA 60.594 50.000 6.13 0.00 46.97 4.08
3519 3765 2.289072 GCTGCTCTAGGTCTGTTTCACA 60.289 50.000 0.00 0.00 0.00 3.58
3534 3780 5.824904 TCCTCATTTCTTTTATGCTGCTC 57.175 39.130 0.00 0.00 0.00 4.26
3536 3782 7.838771 ATTTTCCTCATTTCTTTTATGCTGC 57.161 32.000 0.00 0.00 0.00 5.25
3538 3784 9.428097 GTGAATTTTCCTCATTTCTTTTATGCT 57.572 29.630 0.00 0.00 0.00 3.79
3599 3845 1.741401 TGCGGTGCTGCAGATGTAC 60.741 57.895 20.43 9.95 40.62 2.90
3618 3864 2.711547 AGGAAAACAGGGTCAAGCTAGT 59.288 45.455 0.00 0.00 0.00 2.57
3619 3865 3.425162 AGGAAAACAGGGTCAAGCTAG 57.575 47.619 0.00 0.00 0.00 3.42
3620 3866 3.876309 AAGGAAAACAGGGTCAAGCTA 57.124 42.857 0.00 0.00 0.00 3.32
3621 3867 2.755952 AAGGAAAACAGGGTCAAGCT 57.244 45.000 0.00 0.00 0.00 3.74
3626 3872 4.215908 AGAGGAAAAAGGAAAACAGGGTC 58.784 43.478 0.00 0.00 0.00 4.46
3633 3879 3.815401 CGCTCTGAGAGGAAAAAGGAAAA 59.185 43.478 12.01 0.00 0.00 2.29
3702 3951 2.224548 GCCACACTCCCTTTTGTAGTCT 60.225 50.000 0.00 0.00 0.00 3.24
3870 4119 1.073199 CGTTTCCTGGGACTTGGCT 59.927 57.895 0.00 0.00 0.00 4.75
3897 4146 1.683011 CCTGCCGAAAATCACCAGGAT 60.683 52.381 0.00 0.00 44.50 3.24
3900 4149 1.200020 GTTCCTGCCGAAAATCACCAG 59.800 52.381 0.00 0.00 30.39 4.00
3949 4198 1.063166 GGTAGAGAACGCGTACGGG 59.937 63.158 28.27 28.27 46.04 5.28
3950 4199 1.297158 CGGTAGAGAACGCGTACGG 60.297 63.158 14.46 7.27 46.04 4.02
3953 4202 1.131126 CTTTCCGGTAGAGAACGCGTA 59.869 52.381 14.46 0.00 0.00 4.42
3967 4216 2.412325 GCAACGTGTGATTACCTTTCCG 60.412 50.000 0.00 0.00 0.00 4.30
3975 4224 3.982127 CGTATGTGCAACGTGTGATTA 57.018 42.857 1.24 0.00 42.39 1.75
3984 4233 3.621268 ACATCCATGTACGTATGTGCAAC 59.379 43.478 10.02 0.00 44.07 4.17
4018 4267 2.101783 GTTTGTGATGCCATGATGGGA 58.898 47.619 14.26 11.53 43.78 4.37
4069 4342 1.688735 TCCACCTTCACACACTCTCTG 59.311 52.381 0.00 0.00 0.00 3.35
4073 4346 0.035458 CCCTCCACCTTCACACACTC 59.965 60.000 0.00 0.00 0.00 3.51
4129 4402 8.447833 TCGATAATTACAACACCAATTTGTCTC 58.552 33.333 0.00 0.00 38.21 3.36
4191 4469 0.250467 CCAGGTGTGTGTGGGAAGAG 60.250 60.000 0.00 0.00 0.00 2.85
4192 4470 1.836391 CCAGGTGTGTGTGGGAAGA 59.164 57.895 0.00 0.00 0.00 2.87
4265 4548 6.223351 AGTTCAGTAAGTATAGAACAGGCC 57.777 41.667 0.00 0.00 42.01 5.19
4353 4637 0.524604 AGCACGTTTCGGCAAACAAC 60.525 50.000 11.28 2.73 41.94 3.32
4391 4675 1.153939 CAAGGTCGGACAGCTCGAG 60.154 63.158 8.45 8.45 37.31 4.04
4392 4676 1.461091 AACAAGGTCGGACAGCTCGA 61.461 55.000 10.76 0.00 30.18 4.04
4393 4677 0.600255 AAACAAGGTCGGACAGCTCG 60.600 55.000 10.76 0.00 30.18 5.03
4394 4678 1.594331 AAAACAAGGTCGGACAGCTC 58.406 50.000 10.76 0.00 30.18 4.09
4395 4679 1.676006 CAAAAACAAGGTCGGACAGCT 59.324 47.619 10.76 0.00 0.00 4.24
4396 4680 1.864029 GCAAAAACAAGGTCGGACAGC 60.864 52.381 10.76 0.00 0.00 4.40
4397 4681 1.676006 AGCAAAAACAAGGTCGGACAG 59.324 47.619 10.76 1.86 0.00 3.51
4398 4682 1.403679 CAGCAAAAACAAGGTCGGACA 59.596 47.619 10.76 0.00 0.00 4.02
4399 4683 1.673920 TCAGCAAAAACAAGGTCGGAC 59.326 47.619 0.00 0.00 0.00 4.79
4400 4684 1.946768 CTCAGCAAAAACAAGGTCGGA 59.053 47.619 0.00 0.00 0.00 4.55
4401 4685 1.600413 GCTCAGCAAAAACAAGGTCGG 60.600 52.381 0.00 0.00 0.00 4.79
4402 4686 1.334869 AGCTCAGCAAAAACAAGGTCG 59.665 47.619 0.00 0.00 0.00 4.79
4403 4687 3.067320 AGAAGCTCAGCAAAAACAAGGTC 59.933 43.478 0.00 0.00 0.00 3.85
4404 4688 3.026694 AGAAGCTCAGCAAAAACAAGGT 58.973 40.909 0.00 0.00 0.00 3.50
4405 4689 3.067180 TCAGAAGCTCAGCAAAAACAAGG 59.933 43.478 0.00 0.00 0.00 3.61
4406 4690 4.288531 CTCAGAAGCTCAGCAAAAACAAG 58.711 43.478 0.00 0.00 0.00 3.16
4407 4691 3.489738 GCTCAGAAGCTCAGCAAAAACAA 60.490 43.478 0.00 0.00 45.55 2.83
4408 4692 2.033801 GCTCAGAAGCTCAGCAAAAACA 59.966 45.455 0.00 0.00 45.55 2.83
4409 4693 2.659387 GCTCAGAAGCTCAGCAAAAAC 58.341 47.619 0.00 0.00 45.55 2.43
4574 4891 4.121317 TCTTGCACAGAAAATTGCTTTGG 58.879 39.130 0.00 0.00 39.62 3.28
4575 4892 5.063691 TGTTCTTGCACAGAAAATTGCTTTG 59.936 36.000 11.33 0.00 43.52 2.77
4616 4933 1.354368 TGAACCAAAGGAGCCCTTAGG 59.646 52.381 6.88 0.00 43.92 2.69
4620 4937 2.001076 CTTTGAACCAAAGGAGCCCT 57.999 50.000 10.65 0.00 44.75 5.19
4629 4946 8.154203 GGAAAATTTCCTATTCCTTTGAACCAA 58.846 33.333 17.01 0.00 46.57 3.67
4680 5012 3.036091 CTCCATTTTTCATCTGCCCCAT 58.964 45.455 0.00 0.00 0.00 4.00
4681 5013 2.459644 CTCCATTTTTCATCTGCCCCA 58.540 47.619 0.00 0.00 0.00 4.96
4683 5015 2.738743 TCCTCCATTTTTCATCTGCCC 58.261 47.619 0.00 0.00 0.00 5.36
4796 5128 3.128589 TGTCAACTCTGCTGTTTGTTTCC 59.871 43.478 7.29 0.22 0.00 3.13
4837 5170 0.178068 AGCCAGAAACACACGTCAGT 59.822 50.000 0.00 0.00 0.00 3.41
4861 5194 4.175516 CAGTCTCAGAGAAACTGCATCTC 58.824 47.826 0.20 7.59 45.38 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.