AutoCloner

Multiple sequence alignment - TraesCS7B01G255300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G255300	chr7B	100.000	2663	0	0	1	2663	472504585	472501923	0.000000e+00	4918.0
1	TraesCS7B01G255300	chr7B	92.609	690	51	0	4	693	585890990	585890301	0.000000e+00	992.0
2	TraesCS7B01G255300	chr7B	86.549	565	73	3	2101	2662	561146884	561146320	1.050000e-173	619.0
3	TraesCS7B01G255300	chr3A	89.356	1879	192	8	791	2663	607346179	607344303	0.000000e+00	2355.0
4	TraesCS7B01G255300	chr6B	98.041	1123	18	2	791	1909	3860993	3859871	0.000000e+00	1949.0
5	TraesCS7B01G255300	chr6B	91.411	978	82	2	1688	2663	80030532	80029555	0.000000e+00	1339.0
6	TraesCS7B01G255300	chr6B	92.580	903	66	1	791	1692	80040222	80039320	0.000000e+00	1295.0
7	TraesCS7B01G255300	chr6B	97.163	705	18	2	1961	2663	3859873	3859169	0.000000e+00	1190.0
8	TraesCS7B01G255300	chr6B	95.527	693	31	0	1	693	672488426	672487734	0.000000e+00	1109.0
9	TraesCS7B01G255300	chr7A	90.385	1352	125	5	791	2138	17197948	17199298	0.000000e+00	1772.0
10	TraesCS7B01G255300	chr7A	91.039	491	41	3	2175	2663	17199303	17199792	0.000000e+00	660.0
11	TraesCS7B01G255300	chr1A	82.742	1889	300	23	791	2663	252354838	252352960	0.000000e+00	1659.0
12	TraesCS7B01G255300	chr1D	80.829	1737	274	29	942	2663	26246398	26244706	0.000000e+00	1308.0
13	TraesCS7B01G255300	chr1B	97.547	693	17	0	1	693	496503466	496502774	0.000000e+00	1186.0
14	TraesCS7B01G255300	chr2B	96.691	695	22	1	1	694	651928409	651927715	0.000000e+00	1155.0
15	TraesCS7B01G255300	chr2B	94.790	691	36	0	3	693	785750312	785751002	0.000000e+00	1077.0
16	TraesCS7B01G255300	chr2B	93.814	679	36	1	3	681	2756489	2755817	0.000000e+00	1016.0
17	TraesCS7B01G255300	chr4A	92.341	692	48	5	1	691	176530659	176529972	0.000000e+00	979.0
18	TraesCS7B01G255300	chr3B	90.738	691	63	1	1	691	697458689	697459378	0.000000e+00	920.0
19	TraesCS7B01G255300	chr3B	84.746	59	9	0	1631	1689	78610050	78609992	2.860000e-05	60.2
20	TraesCS7B01G255300	chrUn	93.231	458	29	2	2208	2663	49413953	49413496	0.000000e+00	673.0
21	TraesCS7B01G255300	chrUn	93.231	458	29	2	2208	2663	295216023	295215566	0.000000e+00	673.0
22	TraesCS7B01G255300	chr4B	80.429	700	127	10	1	693	636779050	636779746	2.350000e-145	525.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G255300	chr7B	472501923	472504585	2662	True	4918.0	4918	100.000	1	2663	1	chr7B.!!$R1	2662
1	TraesCS7B01G255300	chr7B	585890301	585890990	689	True	992.0	992	92.609	4	693	1	chr7B.!!$R3	689
2	TraesCS7B01G255300	chr7B	561146320	561146884	564	True	619.0	619	86.549	2101	2662	1	chr7B.!!$R2	561
3	TraesCS7B01G255300	chr3A	607344303	607346179	1876	True	2355.0	2355	89.356	791	2663	1	chr3A.!!$R1	1872
4	TraesCS7B01G255300	chr6B	3859169	3860993	1824	True	1569.5	1949	97.602	791	2663	2	chr6B.!!$R4	1872
5	TraesCS7B01G255300	chr6B	80029555	80030532	977	True	1339.0	1339	91.411	1688	2663	1	chr6B.!!$R1	975
6	TraesCS7B01G255300	chr6B	80039320	80040222	902	True	1295.0	1295	92.580	791	1692	1	chr6B.!!$R2	901
7	TraesCS7B01G255300	chr6B	672487734	672488426	692	True	1109.0	1109	95.527	1	693	1	chr6B.!!$R3	692
8	TraesCS7B01G255300	chr7A	17197948	17199792	1844	False	1216.0	1772	90.712	791	2663	2	chr7A.!!$F1	1872
9	TraesCS7B01G255300	chr1A	252352960	252354838	1878	True	1659.0	1659	82.742	791	2663	1	chr1A.!!$R1	1872
10	TraesCS7B01G255300	chr1D	26244706	26246398	1692	True	1308.0	1308	80.829	942	2663	1	chr1D.!!$R1	1721
11	TraesCS7B01G255300	chr1B	496502774	496503466	692	True	1186.0	1186	97.547	1	693	1	chr1B.!!$R1	692
12	TraesCS7B01G255300	chr2B	651927715	651928409	694	True	1155.0	1155	96.691	1	694	1	chr2B.!!$R2	693
13	TraesCS7B01G255300	chr2B	785750312	785751002	690	False	1077.0	1077	94.790	3	693	1	chr2B.!!$F1	690
14	TraesCS7B01G255300	chr2B	2755817	2756489	672	True	1016.0	1016	93.814	3	681	1	chr2B.!!$R1	678
15	TraesCS7B01G255300	chr4A	176529972	176530659	687	True	979.0	979	92.341	1	691	1	chr4A.!!$R1	690
16	TraesCS7B01G255300	chr3B	697458689	697459378	689	False	920.0	920	90.738	1	691	1	chr3B.!!$F1	690
17	TraesCS7B01G255300	chr4B	636779050	636779746	696	False	525.0	525	80.429	1	693	1	chr4B.!!$F1	692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
728	735	0.446616	GCGTCGAATGGGGAAAAGAC	59.553	55.0	0.0	0.0	0.0	3.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2550	2573	0.386352	CGTTCGGACGTAGCACTTCA	60.386	55.0	8.45	0.0	44.08	3.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
148	150	0.619832	TGGATCTGGCAGGAGCTCTT	60.620	55.000	15.73	2.08	41.70	2.85
371	373	3.429547	GCTCTGCTTCTTCTGGTCGAATA	60.430	47.826	0.00	0.00	0.00	1.75
427	429	1.073897	GGGAGGCAGTTTCAGCTGT	59.926	57.895	14.67	0.00	38.65	4.40
708	715	3.728385	AAAAAGATGGAGGAGAGGGTG	57.272	47.619	0.00	0.00	0.00	4.61
709	716	1.589414	AAAGATGGAGGAGAGGGTGG	58.411	55.000	0.00	0.00	0.00	4.61
710	717	0.985490	AAGATGGAGGAGAGGGTGGC	60.985	60.000	0.00	0.00	0.00	5.01
711	718	2.765807	ATGGAGGAGAGGGTGGCG	60.766	66.667	0.00	0.00	0.00	5.69
712	719	3.625632	ATGGAGGAGAGGGTGGCGT	62.626	63.158	0.00	0.00	0.00	5.68
713	720	3.462678	GGAGGAGAGGGTGGCGTC	61.463	72.222	0.00	0.00	0.00	5.19
714	721	3.827898	GAGGAGAGGGTGGCGTCG	61.828	72.222	0.00	0.00	0.00	5.12
715	722	4.361971	AGGAGAGGGTGGCGTCGA	62.362	66.667	0.00	0.00	0.00	4.20
716	723	3.379445	GGAGAGGGTGGCGTCGAA	61.379	66.667	0.00	0.00	0.00	3.71
717	724	2.722201	GGAGAGGGTGGCGTCGAAT	61.722	63.158	0.00	0.00	0.00	3.34
718	725	1.519455	GAGAGGGTGGCGTCGAATG	60.519	63.158	0.00	0.00	0.00	2.67
719	726	2.511600	GAGGGTGGCGTCGAATGG	60.512	66.667	0.00	0.00	0.00	3.16
720	727	4.096003	AGGGTGGCGTCGAATGGG	62.096	66.667	0.00	0.00	0.00	4.00
722	729	4.090588	GGTGGCGTCGAATGGGGA	62.091	66.667	0.00	0.00	0.00	4.81
723	730	2.046700	GTGGCGTCGAATGGGGAA	60.047	61.111	0.00	0.00	0.00	3.97
724	731	1.673009	GTGGCGTCGAATGGGGAAA	60.673	57.895	0.00	0.00	0.00	3.13
725	732	1.073373	TGGCGTCGAATGGGGAAAA	59.927	52.632	0.00	0.00	0.00	2.29
726	733	0.958382	TGGCGTCGAATGGGGAAAAG	60.958	55.000	0.00	0.00	0.00	2.27
727	734	0.675522	GGCGTCGAATGGGGAAAAGA	60.676	55.000	0.00	0.00	0.00	2.52
728	735	0.446616	GCGTCGAATGGGGAAAAGAC	59.553	55.000	0.00	0.00	0.00	3.01
729	736	1.803334	CGTCGAATGGGGAAAAGACA	58.197	50.000	0.00	0.00	0.00	3.41
730	737	1.732259	CGTCGAATGGGGAAAAGACAG	59.268	52.381	0.00	0.00	0.00	3.51
731	738	2.084546	GTCGAATGGGGAAAAGACAGG	58.915	52.381	0.00	0.00	0.00	4.00
732	739	1.004277	TCGAATGGGGAAAAGACAGGG	59.996	52.381	0.00	0.00	0.00	4.45
733	740	1.271926	CGAATGGGGAAAAGACAGGGT	60.272	52.381	0.00	0.00	0.00	4.34
734	741	2.447443	GAATGGGGAAAAGACAGGGTC	58.553	52.381	0.00	0.00	0.00	4.46
735	742	0.704664	ATGGGGAAAAGACAGGGTCC	59.295	55.000	0.00	0.00	32.18	4.46
736	743	1.002502	GGGGAAAAGACAGGGTCCG	60.003	63.158	0.00	0.00	32.18	4.79
737	744	1.002502	GGGAAAAGACAGGGTCCGG	60.003	63.158	0.00	0.00	32.18	5.14
738	745	1.002502	GGAAAAGACAGGGTCCGGG	60.003	63.158	0.00	0.00	32.18	5.73
739	746	1.002502	GAAAAGACAGGGTCCGGGG	60.003	63.158	0.00	0.00	32.18	5.73
740	747	1.462627	AAAAGACAGGGTCCGGGGA	60.463	57.895	0.00	0.00	32.18	4.81
741	748	1.489560	AAAAGACAGGGTCCGGGGAG	61.490	60.000	0.00	0.00	32.18	4.30
742	749	3.925914	AAGACAGGGTCCGGGGAGG	62.926	68.421	0.00	0.00	42.97	4.30
745	752	4.499116	CAGGGTCCGGGGAGGGAT	62.499	72.222	0.00	0.00	41.52	3.85
746	753	3.707189	AGGGTCCGGGGAGGGATT	61.707	66.667	0.00	0.00	41.52	3.01
747	754	2.694992	GGGTCCGGGGAGGGATTT	60.695	66.667	0.00	0.00	41.52	2.17
748	755	2.753884	GGGTCCGGGGAGGGATTTC	61.754	68.421	0.00	0.00	41.52	2.17
749	756	2.504519	GTCCGGGGAGGGATTTCG	59.495	66.667	0.00	0.00	41.52	3.46
750	757	2.766651	TCCGGGGAGGGATTTCGG	60.767	66.667	0.00	0.00	41.52	4.30
751	758	3.087906	CCGGGGAGGGATTTCGGT	61.088	66.667	0.00	0.00	36.38	4.69
752	759	2.504519	CGGGGAGGGATTTCGGTC	59.495	66.667	0.00	0.00	0.00	4.79
753	760	2.916661	GGGGAGGGATTTCGGTCC	59.083	66.667	0.00	0.00	37.56	4.46
754	761	1.999002	GGGGAGGGATTTCGGTCCA	60.999	63.158	5.10	0.00	40.17	4.02
755	762	1.527370	GGGAGGGATTTCGGTCCAG	59.473	63.158	5.10	0.00	40.17	3.86
756	763	1.272554	GGGAGGGATTTCGGTCCAGT	61.273	60.000	5.10	0.00	40.17	4.00
757	764	0.618981	GGAGGGATTTCGGTCCAGTT	59.381	55.000	5.10	0.00	40.17	3.16
758	765	1.835531	GGAGGGATTTCGGTCCAGTTA	59.164	52.381	5.10	0.00	40.17	2.24
759	766	2.438392	GGAGGGATTTCGGTCCAGTTAT	59.562	50.000	5.10	0.00	40.17	1.89
760	767	3.644738	GGAGGGATTTCGGTCCAGTTATA	59.355	47.826	5.10	0.00	40.17	0.98
761	768	4.502777	GGAGGGATTTCGGTCCAGTTATAC	60.503	50.000	5.10	0.00	40.17	1.47
762	769	4.296056	AGGGATTTCGGTCCAGTTATACT	58.704	43.478	5.10	0.00	40.17	2.12
763	770	4.344390	AGGGATTTCGGTCCAGTTATACTC	59.656	45.833	5.10	0.00	40.17	2.59
764	771	4.502777	GGGATTTCGGTCCAGTTATACTCC	60.503	50.000	5.10	0.00	40.17	3.85
765	772	4.502777	GGATTTCGGTCCAGTTATACTCCC	60.503	50.000	0.00	0.00	38.20	4.30
766	773	3.393426	TTCGGTCCAGTTATACTCCCT	57.607	47.619	0.00	0.00	0.00	4.20
767	774	2.941480	TCGGTCCAGTTATACTCCCTC	58.059	52.381	0.00	0.00	0.00	4.30
768	775	1.962100	CGGTCCAGTTATACTCCCTCC	59.038	57.143	0.00	0.00	0.00	4.30
769	776	2.424523	CGGTCCAGTTATACTCCCTCCT	60.425	54.545	0.00	0.00	0.00	3.69
770	777	3.655384	GGTCCAGTTATACTCCCTCCTT	58.345	50.000	0.00	0.00	0.00	3.36
771	778	3.642377	GGTCCAGTTATACTCCCTCCTTC	59.358	52.174	0.00	0.00	0.00	3.46
772	779	3.642377	GTCCAGTTATACTCCCTCCTTCC	59.358	52.174	0.00	0.00	0.00	3.46
773	780	3.273886	TCCAGTTATACTCCCTCCTTCCA	59.726	47.826	0.00	0.00	0.00	3.53
774	781	4.077982	TCCAGTTATACTCCCTCCTTCCAT	60.078	45.833	0.00	0.00	0.00	3.41
775	782	4.284746	CCAGTTATACTCCCTCCTTCCATC	59.715	50.000	0.00	0.00	0.00	3.51
776	783	5.151454	CAGTTATACTCCCTCCTTCCATCT	58.849	45.833	0.00	0.00	0.00	2.90
777	784	6.315714	CAGTTATACTCCCTCCTTCCATCTA	58.684	44.000	0.00	0.00	0.00	1.98
778	785	6.209788	CAGTTATACTCCCTCCTTCCATCTAC	59.790	46.154	0.00	0.00	0.00	2.59
779	786	6.104990	AGTTATACTCCCTCCTTCCATCTACT	59.895	42.308	0.00	0.00	0.00	2.57
780	787	7.297588	AGTTATACTCCCTCCTTCCATCTACTA	59.702	40.741	0.00	0.00	0.00	1.82
781	788	4.187506	ACTCCCTCCTTCCATCTACTAC	57.812	50.000	0.00	0.00	0.00	2.73
782	789	3.117054	ACTCCCTCCTTCCATCTACTACC	60.117	52.174	0.00	0.00	0.00	3.18
783	790	2.179424	TCCCTCCTTCCATCTACTACCC	59.821	54.545	0.00	0.00	0.00	3.69
784	791	2.610873	CCTCCTTCCATCTACTACCCC	58.389	57.143	0.00	0.00	0.00	4.95
785	792	2.180308	CCTCCTTCCATCTACTACCCCT	59.820	54.545	0.00	0.00	0.00	4.79
786	793	3.401683	CCTCCTTCCATCTACTACCCCTA	59.598	52.174	0.00	0.00	0.00	3.53
787	794	4.046103	CCTCCTTCCATCTACTACCCCTAT	59.954	50.000	0.00	0.00	0.00	2.57
788	795	5.255679	CCTCCTTCCATCTACTACCCCTATA	59.744	48.000	0.00	0.00	0.00	1.31
789	796	6.240793	CCTCCTTCCATCTACTACCCCTATAA	60.241	46.154	0.00	0.00	0.00	0.98
1433	1447	3.960755	TGGATTCAGATACACGATGTCCT	59.039	43.478	0.00	0.00	0.00	3.85
1952	1967	7.419711	TGAAATAGGAGATAACTCGAAAGGT	57.580	36.000	0.00	0.00	43.44	3.50
1955	1970	9.465985	GAAATAGGAGATAACTCGAAAGGTAAG	57.534	37.037	0.00	0.00	43.44	2.34
1998	2013	2.629656	GCGGACAACCAGCTTGCAT	61.630	57.895	0.00	0.00	34.62	3.96
2162	2183	0.320050	TATGTGCTGGAACTGTCGCA	59.680	50.000	0.00	0.00	0.00	5.10
2248	2269	7.175990	ACCCTTTTATGTATCGTTGAAACACAT	59.824	33.333	3.90	3.90	34.40	3.21
2550	2573	4.897076	TGGCTATGCATTGGAGATTTCAAT	59.103	37.500	3.54	0.00	35.45	2.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
148	150	6.814954	AGATAACAGGCTTATTGAAGAGGA	57.185	37.500	0.00	0.00	34.25	3.71
154	156	5.428457	TCAGGGAAGATAACAGGCTTATTGA	59.572	40.000	0.00	0.00	0.00	2.57
275	277	3.430098	CCTCTGCTGATAAGCTCGAACTT	60.430	47.826	6.30	6.30	35.49	2.66
371	373	1.455959	AGGAATAGAGTCGGCCGCT	60.456	57.895	23.51	21.31	0.00	5.52
427	429	2.499205	CGCATGGCCTCCGAGTTA	59.501	61.111	3.32	0.00	0.00	2.24
694	701	2.765807	CGCCACCCTCTCCTCCAT	60.766	66.667	0.00	0.00	0.00	3.41
695	702	4.316823	ACGCCACCCTCTCCTCCA	62.317	66.667	0.00	0.00	0.00	3.86
696	703	3.462678	GACGCCACCCTCTCCTCC	61.463	72.222	0.00	0.00	0.00	4.30
697	704	3.827898	CGACGCCACCCTCTCCTC	61.828	72.222	0.00	0.00	0.00	3.71
698	705	3.881019	TTCGACGCCACCCTCTCCT	62.881	63.158	0.00	0.00	0.00	3.69
699	706	2.722201	ATTCGACGCCACCCTCTCC	61.722	63.158	0.00	0.00	0.00	3.71
700	707	1.519455	CATTCGACGCCACCCTCTC	60.519	63.158	0.00	0.00	0.00	3.20
701	708	2.579201	CATTCGACGCCACCCTCT	59.421	61.111	0.00	0.00	0.00	3.69
702	709	2.511600	CCATTCGACGCCACCCTC	60.512	66.667	0.00	0.00	0.00	4.30
703	710	4.096003	CCCATTCGACGCCACCCT	62.096	66.667	0.00	0.00	0.00	4.34
705	712	3.615509	TTCCCCATTCGACGCCACC	62.616	63.158	0.00	0.00	0.00	4.61
706	713	1.238625	TTTTCCCCATTCGACGCCAC	61.239	55.000	0.00	0.00	0.00	5.01
707	714	0.958382	CTTTTCCCCATTCGACGCCA	60.958	55.000	0.00	0.00	0.00	5.69
708	715	0.675522	TCTTTTCCCCATTCGACGCC	60.676	55.000	0.00	0.00	0.00	5.68
709	716	0.446616	GTCTTTTCCCCATTCGACGC	59.553	55.000	0.00	0.00	0.00	5.19
710	717	1.732259	CTGTCTTTTCCCCATTCGACG	59.268	52.381	0.00	0.00	0.00	5.12
711	718	2.084546	CCTGTCTTTTCCCCATTCGAC	58.915	52.381	0.00	0.00	0.00	4.20
712	719	1.004277	CCCTGTCTTTTCCCCATTCGA	59.996	52.381	0.00	0.00	0.00	3.71
713	720	1.271926	ACCCTGTCTTTTCCCCATTCG	60.272	52.381	0.00	0.00	0.00	3.34
714	721	2.447443	GACCCTGTCTTTTCCCCATTC	58.553	52.381	0.00	0.00	0.00	2.67
715	722	1.077169	GGACCCTGTCTTTTCCCCATT	59.923	52.381	0.00	0.00	32.47	3.16
716	723	0.704664	GGACCCTGTCTTTTCCCCAT	59.295	55.000	0.00	0.00	32.47	4.00
717	724	1.774894	CGGACCCTGTCTTTTCCCCA	61.775	60.000	0.00	0.00	32.47	4.96
718	725	1.002502	CGGACCCTGTCTTTTCCCC	60.003	63.158	0.00	0.00	32.47	4.81
719	726	1.002502	CCGGACCCTGTCTTTTCCC	60.003	63.158	0.00	0.00	32.47	3.97
720	727	1.002502	CCCGGACCCTGTCTTTTCC	60.003	63.158	0.73	0.00	32.47	3.13
721	728	1.002502	CCCCGGACCCTGTCTTTTC	60.003	63.158	0.73	0.00	32.47	2.29
722	729	1.462627	TCCCCGGACCCTGTCTTTT	60.463	57.895	0.73	0.00	32.47	2.27
723	730	1.918800	CTCCCCGGACCCTGTCTTT	60.919	63.158	0.73	0.00	32.47	2.52
724	731	2.284699	CTCCCCGGACCCTGTCTT	60.285	66.667	0.73	0.00	32.47	3.01
725	732	4.400251	CCTCCCCGGACCCTGTCT	62.400	72.222	0.73	0.00	32.47	3.41
728	735	4.499116	ATCCCTCCCCGGACCCTG	62.499	72.222	0.73	0.00	33.77	4.45
729	736	3.283467	AAATCCCTCCCCGGACCCT	62.283	63.158	0.73	0.00	33.77	4.34
730	737	2.694992	AAATCCCTCCCCGGACCC	60.695	66.667	0.73	0.00	33.77	4.46
731	738	2.916661	GAAATCCCTCCCCGGACC	59.083	66.667	0.73	0.00	33.77	4.46
732	739	2.504519	CGAAATCCCTCCCCGGAC	59.495	66.667	0.73	0.00	33.77	4.79
733	740	2.766651	CCGAAATCCCTCCCCGGA	60.767	66.667	0.73	0.00	42.49	5.14
734	741	3.087906	ACCGAAATCCCTCCCCGG	61.088	66.667	0.00	0.00	45.09	5.73
735	742	2.504519	GACCGAAATCCCTCCCCG	59.495	66.667	0.00	0.00	0.00	5.73
736	743	1.984288	CTGGACCGAAATCCCTCCCC	61.984	65.000	0.00	0.00	38.06	4.81
737	744	1.272554	ACTGGACCGAAATCCCTCCC	61.273	60.000	0.00	0.00	38.06	4.30
738	745	0.618981	AACTGGACCGAAATCCCTCC	59.381	55.000	0.00	0.00	38.06	4.30
739	746	3.840124	ATAACTGGACCGAAATCCCTC	57.160	47.619	0.00	0.00	38.06	4.30
740	747	4.296056	AGTATAACTGGACCGAAATCCCT	58.704	43.478	0.00	0.00	38.06	4.20
741	748	4.502777	GGAGTATAACTGGACCGAAATCCC	60.503	50.000	0.00	0.00	38.06	3.85
742	749	4.502777	GGGAGTATAACTGGACCGAAATCC	60.503	50.000	0.00	0.00	39.45	3.01
743	750	4.344390	AGGGAGTATAACTGGACCGAAATC	59.656	45.833	0.00	0.00	0.00	2.17
744	751	4.296056	AGGGAGTATAACTGGACCGAAAT	58.704	43.478	0.00	0.00	0.00	2.17
745	752	3.703052	GAGGGAGTATAACTGGACCGAAA	59.297	47.826	0.00	0.00	0.00	3.46
746	753	3.294214	GAGGGAGTATAACTGGACCGAA	58.706	50.000	0.00	0.00	0.00	4.30
747	754	2.423947	GGAGGGAGTATAACTGGACCGA	60.424	54.545	0.00	0.00	0.00	4.69
748	755	1.962100	GGAGGGAGTATAACTGGACCG	59.038	57.143	0.00	0.00	0.00	4.79
749	756	3.331718	AGGAGGGAGTATAACTGGACC	57.668	52.381	0.00	0.00	0.00	4.46
750	757	3.642377	GGAAGGAGGGAGTATAACTGGAC	59.358	52.174	0.00	0.00	0.00	4.02
751	758	3.273886	TGGAAGGAGGGAGTATAACTGGA	59.726	47.826	0.00	0.00	0.00	3.86
752	759	3.654273	TGGAAGGAGGGAGTATAACTGG	58.346	50.000	0.00	0.00	0.00	4.00
753	760	5.151454	AGATGGAAGGAGGGAGTATAACTG	58.849	45.833	0.00	0.00	0.00	3.16
754	761	5.426325	AGATGGAAGGAGGGAGTATAACT	57.574	43.478	0.00	0.00	0.00	2.24
755	762	6.316513	AGTAGATGGAAGGAGGGAGTATAAC	58.683	44.000	0.00	0.00	0.00	1.89
756	763	6.547396	AGTAGATGGAAGGAGGGAGTATAA	57.453	41.667	0.00	0.00	0.00	0.98
757	764	6.011805	GGTAGTAGATGGAAGGAGGGAGTATA	60.012	46.154	0.00	0.00	0.00	1.47
758	765	5.222379	GGTAGTAGATGGAAGGAGGGAGTAT	60.222	48.000	0.00	0.00	0.00	2.12
759	766	4.106019	GGTAGTAGATGGAAGGAGGGAGTA	59.894	50.000	0.00	0.00	0.00	2.59
760	767	3.117054	GGTAGTAGATGGAAGGAGGGAGT	60.117	52.174	0.00	0.00	0.00	3.85
761	768	3.502356	GGTAGTAGATGGAAGGAGGGAG	58.498	54.545	0.00	0.00	0.00	4.30
762	769	2.179424	GGGTAGTAGATGGAAGGAGGGA	59.821	54.545	0.00	0.00	0.00	4.20
763	770	2.610873	GGGTAGTAGATGGAAGGAGGG	58.389	57.143	0.00	0.00	0.00	4.30
764	771	2.180308	AGGGGTAGTAGATGGAAGGAGG	59.820	54.545	0.00	0.00	0.00	4.30
765	772	3.621682	AGGGGTAGTAGATGGAAGGAG	57.378	52.381	0.00	0.00	0.00	3.69
766	773	6.808647	TTATAGGGGTAGTAGATGGAAGGA	57.191	41.667	0.00	0.00	0.00	3.36
767	774	6.440965	CCTTTATAGGGGTAGTAGATGGAAGG	59.559	46.154	0.00	0.00	37.94	3.46
768	775	7.483580	CCTTTATAGGGGTAGTAGATGGAAG	57.516	44.000	0.00	0.00	37.94	3.46
783	790	5.509332	GCCGAGAGAAGTAACCCTTTATAGG	60.509	48.000	0.00	0.00	41.60	2.57
784	791	5.530712	GCCGAGAGAAGTAACCCTTTATAG	58.469	45.833	0.00	0.00	32.03	1.31
785	792	4.037208	CGCCGAGAGAAGTAACCCTTTATA	59.963	45.833	0.00	0.00	32.03	0.98
786	793	3.181478	CGCCGAGAGAAGTAACCCTTTAT	60.181	47.826	0.00	0.00	32.03	1.40
787	794	2.165030	CGCCGAGAGAAGTAACCCTTTA	59.835	50.000	0.00	0.00	32.03	1.85
788	795	1.067071	CGCCGAGAGAAGTAACCCTTT	60.067	52.381	0.00	0.00	32.03	3.11
789	796	0.531200	CGCCGAGAGAAGTAACCCTT	59.469	55.000	0.00	0.00	35.59	3.95
823	830	1.405526	GGACGAAGCTATGCCTCAACA	60.406	52.381	0.00	0.00	0.00	3.33
1433	1447	3.023119	ACCAGATGTGCAAACAGTTTCA	58.977	40.909	0.00	0.00	0.00	2.69
1534	1548	5.460646	GTGTACATTGATTTTCACCCACAG	58.539	41.667	0.00	0.00	0.00	3.66
1952	1967	3.398318	TCTAGACACATGCCCTCCTTA	57.602	47.619	0.00	0.00	0.00	2.69
1955	1970	2.111384	TCTTCTAGACACATGCCCTCC	58.889	52.381	0.00	0.00	0.00	4.30
1998	2013	1.072331	GCCTCCTCCTGACTGAACAAA	59.928	52.381	0.00	0.00	0.00	2.83
2503	2526	1.391826	GAGCGAGCTCAAAGTGCTTAC	59.608	52.381	19.09	0.00	41.30	2.34
2550	2573	0.386352	CGTTCGGACGTAGCACTTCA	60.386	55.000	8.45	0.00	44.08	3.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.