Multiple sequence alignment - TraesCS7B01G255000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G255000 chr7B 100.000 3472 0 0 2847 6318 470851600 470848129 0.000000e+00 6412.0
1 TraesCS7B01G255000 chr7B 100.000 2613 0 0 1 2613 470854446 470851834 0.000000e+00 4826.0
2 TraesCS7B01G255000 chr7B 91.566 83 7 0 2077 2159 232876577 232876495 1.440000e-21 115.0
3 TraesCS7B01G255000 chr7D 95.917 1886 52 8 2908 4769 451199036 451197152 0.000000e+00 3033.0
4 TraesCS7B01G255000 chr7D 95.416 829 33 2 722 1549 451201121 451200297 0.000000e+00 1315.0
5 TraesCS7B01G255000 chr7D 90.358 809 47 20 4768 5561 451194243 451193451 0.000000e+00 1033.0
6 TraesCS7B01G255000 chr7D 98.158 380 7 0 2160 2539 451199712 451199333 0.000000e+00 664.0
7 TraesCS7B01G255000 chr7D 91.667 456 19 7 5869 6317 451193310 451192867 1.160000e-171 614.0
8 TraesCS7B01G255000 chr7D 90.855 339 19 9 1758 2090 451200276 451199944 1.620000e-120 444.0
9 TraesCS7B01G255000 chr7D 93.333 285 19 0 720 1004 451206931 451206647 7.570000e-114 422.0
10 TraesCS7B01G255000 chr7D 89.925 268 24 1 884 1151 451208593 451208329 6.070000e-90 342.0
11 TraesCS7B01G255000 chr7D 91.781 146 5 3 5648 5788 451193451 451193308 5.000000e-46 196.0
12 TraesCS7B01G255000 chr7D 90.476 84 7 1 2076 2159 412742921 412742839 6.700000e-20 110.0
13 TraesCS7B01G255000 chr7D 89.412 85 9 0 5787 5871 602187324 602187240 2.410000e-19 108.0
14 TraesCS7B01G255000 chr7D 87.059 85 8 3 5787 5871 552186319 552186238 6.740000e-15 93.5
15 TraesCS7B01G255000 chr7D 92.308 52 4 0 2108 2159 451199949 451199898 2.440000e-09 75.0
16 TraesCS7B01G255000 chr7A 93.717 1528 65 11 4277 5788 545924397 545925909 0.000000e+00 2261.0
17 TraesCS7B01G255000 chr7A 88.912 1425 103 16 2886 4286 545904231 545905624 0.000000e+00 1705.0
18 TraesCS7B01G255000 chr7A 94.036 721 39 4 1 719 91858130 91858848 0.000000e+00 1090.0
19 TraesCS7B01G255000 chr7A 93.794 709 39 5 1 707 510492080 510492785 0.000000e+00 1061.0
20 TraesCS7B01G255000 chr7A 93.037 675 41 4 844 1516 545903251 545903921 0.000000e+00 981.0
21 TraesCS7B01G255000 chr7A 94.859 389 16 4 5932 6318 545926128 545926514 7.010000e-169 604.0
22 TraesCS7B01G255000 chr7A 87.578 322 12 10 2188 2494 545903929 545904237 1.300000e-91 348.0
23 TraesCS7B01G255000 chr7A 88.618 123 9 5 2494 2613 663805835 663805715 1.840000e-30 145.0
24 TraesCS7B01G255000 chr7A 86.667 120 10 6 2496 2611 662175423 662175540 1.850000e-25 128.0
25 TraesCS7B01G255000 chr7A 90.588 85 8 0 5787 5871 408252193 408252109 5.180000e-21 113.0
26 TraesCS7B01G255000 chr7A 96.923 65 2 0 5869 5933 545925907 545925971 6.700000e-20 110.0
27 TraesCS7B01G255000 chr7A 89.286 84 9 0 2076 2159 407727107 407727024 8.660000e-19 106.0
28 TraesCS7B01G255000 chr7A 89.873 79 8 0 2079 2157 278235842 278235764 1.120000e-17 102.0
29 TraesCS7B01G255000 chr2B 94.882 723 37 0 1 723 533540774 533541496 0.000000e+00 1131.0
30 TraesCS7B01G255000 chr2B 93.472 720 45 2 1 719 790325525 790326243 0.000000e+00 1068.0
31 TraesCS7B01G255000 chr2B 78.750 480 84 13 4689 5161 215940122 215939654 7.960000e-79 305.0
32 TraesCS7B01G255000 chr2B 90.265 226 18 4 1855 2079 8689453 8689675 6.200000e-75 292.0
33 TraesCS7B01G255000 chr2B 95.935 123 4 1 1679 1800 152829963 152829841 1.390000e-46 198.0
34 TraesCS7B01G255000 chr2B 92.500 80 6 0 2077 2156 40922246 40922325 1.440000e-21 115.0
35 TraesCS7B01G255000 chrUn 93.620 721 42 4 1 720 1603599 1604316 0.000000e+00 1074.0
36 TraesCS7B01G255000 chrUn 96.748 123 3 1 1679 1800 469402881 469402759 2.990000e-48 204.0
37 TraesCS7B01G255000 chr1D 93.611 720 44 2 2 720 83718743 83718025 0.000000e+00 1074.0
38 TraesCS7B01G255000 chr1D 95.935 123 4 1 1679 1800 254443537 254443659 1.390000e-46 198.0
39 TraesCS7B01G255000 chr1D 94.805 77 3 1 1590 1665 254443478 254443554 1.110000e-22 119.0
40 TraesCS7B01G255000 chr4D 93.602 719 43 3 6 722 26482590 26481873 0.000000e+00 1070.0
41 TraesCS7B01G255000 chr4D 96.748 123 3 1 1679 1800 19876956 19877078 2.990000e-48 204.0
42 TraesCS7B01G255000 chr4D 95.833 72 2 1 1594 1665 19876903 19876973 1.440000e-21 115.0
43 TraesCS7B01G255000 chr4D 100.000 30 0 0 5787 5816 400788705 400788676 8.850000e-04 56.5
44 TraesCS7B01G255000 chr1A 93.361 723 43 5 1 719 375329723 375329002 0.000000e+00 1064.0
45 TraesCS7B01G255000 chr1A 95.833 72 2 1 1594 1665 154075051 154075121 1.440000e-21 115.0
46 TraesCS7B01G255000 chr1A 88.172 93 10 1 5785 5877 513118188 513118097 6.700000e-20 110.0
47 TraesCS7B01G255000 chr3D 96.243 559 19 1 1 559 614988617 614988061 0.000000e+00 915.0
48 TraesCS7B01G255000 chr3D 85.113 309 32 13 1778 2079 355617631 355617330 2.860000e-78 303.0
49 TraesCS7B01G255000 chr3D 85.560 277 26 9 1797 2067 513859395 513859663 1.730000e-70 278.0
50 TraesCS7B01G255000 chr3D 84.828 290 25 9 1797 2079 151903995 151903718 2.240000e-69 274.0
51 TraesCS7B01G255000 chr3D 95.935 123 4 1 1679 1800 568585620 568585742 1.390000e-46 198.0
52 TraesCS7B01G255000 chr3D 85.393 89 11 2 5784 5871 66406685 66406772 2.430000e-14 91.6
53 TraesCS7B01G255000 chr3D 92.683 41 3 0 5787 5827 131646904 131646944 6.840000e-05 60.2
54 TraesCS7B01G255000 chr5B 87.285 291 25 9 1797 2079 455257876 455258162 7.900000e-84 322.0
55 TraesCS7B01G255000 chr5B 87.640 89 9 2 5784 5871 462138983 462139070 1.120000e-17 102.0
56 TraesCS7B01G255000 chr5B 89.744 78 6 2 5787 5863 13704962 13704886 1.450000e-16 99.0
57 TraesCS7B01G255000 chr3B 78.807 486 81 16 240 719 641808330 641807861 2.210000e-79 307.0
58 TraesCS7B01G255000 chr3B 89.247 93 7 3 2523 2613 434642470 434642379 5.180000e-21 113.0
59 TraesCS7B01G255000 chr4A 85.764 288 23 14 1797 2079 706870003 706869729 8.010000e-74 289.0
60 TraesCS7B01G255000 chr4A 85.507 276 28 10 1797 2071 710206260 710205996 1.730000e-70 278.0
61 TraesCS7B01G255000 chr4A 88.095 126 12 3 2490 2613 13770923 13771047 5.100000e-31 147.0
62 TraesCS7B01G255000 chr3A 90.411 219 20 1 2216 2433 40295862 40296080 2.880000e-73 287.0
63 TraesCS7B01G255000 chr3A 88.430 121 10 4 2496 2613 552484176 552484295 6.600000e-30 143.0
64 TraesCS7B01G255000 chr3A 90.805 87 8 0 5786 5872 170519812 170519726 4.000000e-22 117.0
65 TraesCS7B01G255000 chr3A 89.773 88 8 1 5784 5871 586409768 586409854 1.860000e-20 111.0
66 TraesCS7B01G255000 chr6B 86.328 256 24 4 2188 2433 632559629 632559883 1.040000e-67 268.0
67 TraesCS7B01G255000 chr6B 87.402 127 10 6 2490 2613 702508167 702508290 2.370000e-29 141.0
68 TraesCS7B01G255000 chr6B 92.593 81 6 0 2079 2159 314438392 314438312 4.000000e-22 117.0
69 TraesCS7B01G255000 chr6B 89.011 91 7 3 2524 2613 169099883 169099971 6.700000e-20 110.0
70 TraesCS7B01G255000 chr5D 84.192 291 29 6 1797 2079 67871649 67871368 3.760000e-67 267.0
71 TraesCS7B01G255000 chr5D 96.748 123 3 1 1679 1800 503300405 503300527 2.990000e-48 204.0
72 TraesCS7B01G255000 chr5D 95.935 123 4 1 1679 1800 6168444 6168322 1.390000e-46 198.0
73 TraesCS7B01G255000 chr5D 93.258 89 4 2 2078 2166 44681835 44681749 5.140000e-26 130.0
74 TraesCS7B01G255000 chr5D 88.889 81 5 2 2499 2575 556520475 556520395 5.210000e-16 97.1
75 TraesCS7B01G255000 chr5D 86.207 87 9 2 5786 5872 456733432 456733349 2.430000e-14 91.6
76 TraesCS7B01G255000 chr1B 96.748 123 3 1 1679 1800 543406130 543406008 2.990000e-48 204.0
77 TraesCS7B01G255000 chr2A 96.721 122 3 1 1680 1800 53985265 53985144 1.070000e-47 202.0
78 TraesCS7B01G255000 chr5A 88.333 120 11 3 2496 2613 437917791 437917909 2.370000e-29 141.0
79 TraesCS7B01G255000 chr2D 95.181 83 4 0 2077 2159 25208714 25208796 1.430000e-26 132.0
80 TraesCS7B01G255000 chr6A 88.506 87 9 1 5787 5872 460621867 460621953 3.120000e-18 104.0
81 TraesCS7B01G255000 chr6A 88.889 81 8 1 5787 5866 519204997 519204917 1.450000e-16 99.0
82 TraesCS7B01G255000 chr6D 86.316 95 11 2 5778 5871 48464494 48464587 1.120000e-17 102.0
83 TraesCS7B01G255000 chr6D 87.209 86 9 2 5787 5871 377541725 377541641 5.210000e-16 97.1
84 TraesCS7B01G255000 chr6D 85.882 85 12 0 5787 5871 320712889 320712973 2.430000e-14 91.6
85 TraesCS7B01G255000 chr4B 97.619 42 0 1 5786 5827 119112206 119112166 3.160000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G255000 chr7B 470848129 470854446 6317 True 5619.000000 6412 100.000000 1 6318 2 chr7B.!!$R2 6317
1 TraesCS7B01G255000 chr7D 451192867 451201121 8254 True 921.750000 3033 93.307500 722 6317 8 chr7D.!!$R4 5595
2 TraesCS7B01G255000 chr7D 451206647 451208593 1946 True 382.000000 422 91.629000 720 1151 2 chr7D.!!$R5 431
3 TraesCS7B01G255000 chr7A 91858130 91858848 718 False 1090.000000 1090 94.036000 1 719 1 chr7A.!!$F1 718
4 TraesCS7B01G255000 chr7A 510492080 510492785 705 False 1061.000000 1061 93.794000 1 707 1 chr7A.!!$F2 706
5 TraesCS7B01G255000 chr7A 545903251 545905624 2373 False 1011.333333 1705 89.842333 844 4286 3 chr7A.!!$F4 3442
6 TraesCS7B01G255000 chr7A 545924397 545926514 2117 False 991.666667 2261 95.166333 4277 6318 3 chr7A.!!$F5 2041
7 TraesCS7B01G255000 chr2B 533540774 533541496 722 False 1131.000000 1131 94.882000 1 723 1 chr2B.!!$F3 722
8 TraesCS7B01G255000 chr2B 790325525 790326243 718 False 1068.000000 1068 93.472000 1 719 1 chr2B.!!$F4 718
9 TraesCS7B01G255000 chrUn 1603599 1604316 717 False 1074.000000 1074 93.620000 1 720 1 chrUn.!!$F1 719
10 TraesCS7B01G255000 chr1D 83718025 83718743 718 True 1074.000000 1074 93.611000 2 720 1 chr1D.!!$R1 718
11 TraesCS7B01G255000 chr4D 26481873 26482590 717 True 1070.000000 1070 93.602000 6 722 1 chr4D.!!$R1 716
12 TraesCS7B01G255000 chr1A 375329002 375329723 721 True 1064.000000 1064 93.361000 1 719 1 chr1A.!!$R1 718
13 TraesCS7B01G255000 chr3D 614988061 614988617 556 True 915.000000 915 96.243000 1 559 1 chr3D.!!$R3 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
879 1823 0.251787 ATGCTTGTGGGAGGGGAAAC 60.252 55.0 0.00 0.0 0.00 2.78 F
1537 2482 0.036671 ACTAACTAGTGGTTGGGCGC 60.037 55.0 0.00 0.0 40.13 6.53 F
2556 3704 0.038744 AAACATGCAGACCTGAGGGG 59.961 55.0 2.38 0.0 41.89 4.79 F
2891 4039 0.036671 TAGCTCCGTCACTGTCTCGA 60.037 55.0 0.00 0.0 0.00 4.04 F
3024 4175 1.021390 CGTGACCAGCAGATCCAACC 61.021 60.0 0.00 0.0 0.00 3.77 F
3685 4856 1.533625 TTGCATGCCAAGTACTCCAC 58.466 50.0 16.68 0.0 0.00 4.02 F
4440 5630 2.851263 ATCCACCGTTTTCAGTAGCA 57.149 45.0 0.00 0.0 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2872 4020 0.036671 TCGAGACAGTGACGGAGCTA 60.037 55.000 0.00 0.00 0.00 3.32 R
2875 4023 0.167033 CACTCGAGACAGTGACGGAG 59.833 60.000 21.68 6.17 45.92 4.63 R
3571 4742 0.305617 GAAAAACGGTCCGTGTGTCC 59.694 55.000 19.67 1.42 39.99 4.02 R
4724 5914 0.601558 TCCAGGTCGTCAGTAGTTGC 59.398 55.000 0.00 0.00 0.00 4.17 R
4931 9032 1.450360 AGCCCCTTCTCTTTCTTGGT 58.550 50.000 0.00 0.00 0.00 3.67 R
5160 9268 2.373169 TGGTGGCATCTTCTCAGAAAGT 59.627 45.455 0.00 0.00 30.76 2.66 R
6141 10419 2.412847 GCATACTTTCCAACTGTGCGTC 60.413 50.000 0.00 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
486 489 1.523711 TCGCGAGGATTTGGATGGC 60.524 57.895 3.71 0.00 0.00 4.40
513 516 9.577110 GAAAATAGATTTGAATTCTGATGTGCA 57.423 29.630 7.05 0.00 0.00 4.57
535 538 7.598493 GTGCAGTTTGAAAGATATGGCTTTTTA 59.402 33.333 0.00 0.00 38.16 1.52
573 577 7.336931 ACCCGAAATAAATACATATGGATCTGC 59.663 37.037 7.80 0.00 0.00 4.26
613 618 3.625764 GGACAGCGTGAAGGCATTTAATA 59.374 43.478 0.00 0.00 34.64 0.98
746 1690 2.307496 TCACATGCCAAACAAGGGAT 57.693 45.000 0.00 0.00 40.74 3.85
806 1750 4.079253 GCAAACTTCCATCCCTAAACTCA 58.921 43.478 0.00 0.00 0.00 3.41
821 1765 4.550076 AAACTCACATTCCCTCTCTCTG 57.450 45.455 0.00 0.00 0.00 3.35
862 1806 8.975410 TGTAGCTTTCAGAAATTTGATTGATG 57.025 30.769 0.00 0.00 0.00 3.07
866 1810 7.117812 AGCTTTCAGAAATTTGATTGATGCTTG 59.882 33.333 0.00 0.00 30.86 4.01
879 1823 0.251787 ATGCTTGTGGGAGGGGAAAC 60.252 55.000 0.00 0.00 0.00 2.78
941 1886 2.637872 ACCATCGAGAAAAACAGAGGGA 59.362 45.455 1.92 0.00 37.90 4.20
1012 1957 4.403137 CACCAATGGCCACACGCG 62.403 66.667 8.16 3.53 38.94 6.01
1082 2027 1.303643 CCACAACTTCTCCCAGGCC 60.304 63.158 0.00 0.00 0.00 5.19
1086 2031 1.841556 AACTTCTCCCAGGCCACGA 60.842 57.895 5.01 0.00 0.00 4.35
1087 2032 1.831652 AACTTCTCCCAGGCCACGAG 61.832 60.000 5.01 6.45 0.00 4.18
1390 2335 0.250234 CAACATCCGCCTCCTCAAGA 59.750 55.000 0.00 0.00 0.00 3.02
1501 2446 1.171052 CGCGTGTGCATTACAAATCG 58.829 50.000 0.00 0.00 41.89 3.34
1522 2467 3.004419 CGGTGACAGTCTCTGTGAACTAA 59.996 47.826 7.14 0.00 45.44 2.24
1523 2468 4.299978 GGTGACAGTCTCTGTGAACTAAC 58.700 47.826 7.14 0.00 45.44 2.34
1524 2469 4.038162 GGTGACAGTCTCTGTGAACTAACT 59.962 45.833 7.14 0.00 45.44 2.24
1525 2470 5.241064 GGTGACAGTCTCTGTGAACTAACTA 59.759 44.000 7.14 0.00 45.44 2.24
1526 2471 6.375377 GTGACAGTCTCTGTGAACTAACTAG 58.625 44.000 7.14 0.00 45.44 2.57
1529 2474 5.241949 ACAGTCTCTGTGAACTAACTAGTGG 59.758 44.000 0.00 0.00 43.63 4.00
1530 2475 5.241949 CAGTCTCTGTGAACTAACTAGTGGT 59.758 44.000 0.00 0.00 36.50 4.16
1531 2476 5.834204 AGTCTCTGTGAACTAACTAGTGGTT 59.166 40.000 12.44 12.44 41.54 3.67
1532 2477 5.921408 GTCTCTGTGAACTAACTAGTGGTTG 59.079 44.000 16.07 5.44 38.75 3.77
1533 2478 5.010719 TCTCTGTGAACTAACTAGTGGTTGG 59.989 44.000 16.07 1.26 41.34 3.77
1534 2479 4.039973 TCTGTGAACTAACTAGTGGTTGGG 59.960 45.833 16.07 0.99 40.13 4.12
1535 2480 3.072211 GTGAACTAACTAGTGGTTGGGC 58.928 50.000 16.07 5.98 40.13 5.36
1536 2481 2.289195 TGAACTAACTAGTGGTTGGGCG 60.289 50.000 16.07 0.00 40.13 6.13
1537 2482 0.036671 ACTAACTAGTGGTTGGGCGC 60.037 55.000 0.00 0.00 40.13 6.53
1538 2483 0.743345 CTAACTAGTGGTTGGGCGCC 60.743 60.000 21.18 21.18 38.75 6.53
1539 2484 1.481901 TAACTAGTGGTTGGGCGCCA 61.482 55.000 30.85 12.04 38.75 5.69
1570 2515 3.997064 CTGCGTCGCTTGGGAGGAG 62.997 68.421 19.50 0.28 0.00 3.69
1572 2517 3.068691 CGTCGCTTGGGAGGAGGA 61.069 66.667 1.93 0.00 0.00 3.71
1573 2518 2.579738 GTCGCTTGGGAGGAGGAC 59.420 66.667 0.00 0.00 0.00 3.85
1574 2519 3.068691 TCGCTTGGGAGGAGGACG 61.069 66.667 0.00 0.00 0.00 4.79
1576 2521 2.943978 CGCTTGGGAGGAGGACGTT 61.944 63.158 0.00 0.00 0.00 3.99
1577 2522 1.375326 GCTTGGGAGGAGGACGTTT 59.625 57.895 0.00 0.00 0.00 3.60
1578 2523 0.673956 GCTTGGGAGGAGGACGTTTC 60.674 60.000 0.00 0.00 0.00 2.78
1579 2524 0.977395 CTTGGGAGGAGGACGTTTCT 59.023 55.000 0.00 0.00 0.00 2.52
1580 2525 2.176889 CTTGGGAGGAGGACGTTTCTA 58.823 52.381 0.00 0.00 0.00 2.10
1581 2526 2.544844 TGGGAGGAGGACGTTTCTAT 57.455 50.000 0.00 0.00 0.00 1.98
1582 2527 2.829023 TGGGAGGAGGACGTTTCTATT 58.171 47.619 0.00 0.00 0.00 1.73
1583 2528 3.178865 TGGGAGGAGGACGTTTCTATTT 58.821 45.455 0.00 0.00 0.00 1.40
1584 2529 3.585732 TGGGAGGAGGACGTTTCTATTTT 59.414 43.478 0.00 0.00 0.00 1.82
1585 2530 4.778958 TGGGAGGAGGACGTTTCTATTTTA 59.221 41.667 0.00 0.00 0.00 1.52
1586 2531 5.248934 TGGGAGGAGGACGTTTCTATTTTAA 59.751 40.000 0.00 0.00 0.00 1.52
1587 2532 6.175471 GGGAGGAGGACGTTTCTATTTTAAA 58.825 40.000 0.00 0.00 0.00 1.52
1588 2533 6.656270 GGGAGGAGGACGTTTCTATTTTAAAA 59.344 38.462 2.51 2.51 0.00 1.52
1589 2534 7.175467 GGGAGGAGGACGTTTCTATTTTAAAAA 59.825 37.037 4.44 0.00 0.00 1.94
1637 2582 7.393841 ACTAGCAATTATACTACTCCGATCC 57.606 40.000 0.00 0.00 0.00 3.36
1638 2583 6.946583 ACTAGCAATTATACTACTCCGATCCA 59.053 38.462 0.00 0.00 0.00 3.41
1639 2584 6.665992 AGCAATTATACTACTCCGATCCAA 57.334 37.500 0.00 0.00 0.00 3.53
1640 2585 7.062749 AGCAATTATACTACTCCGATCCAAA 57.937 36.000 0.00 0.00 0.00 3.28
1641 2586 7.506114 AGCAATTATACTACTCCGATCCAAAA 58.494 34.615 0.00 0.00 0.00 2.44
1642 2587 8.157476 AGCAATTATACTACTCCGATCCAAAAT 58.843 33.333 0.00 0.00 0.00 1.82
1643 2588 9.431887 GCAATTATACTACTCCGATCCAAAATA 57.568 33.333 0.00 0.00 0.00 1.40
1734 2679 9.601217 AGTAAGCACATTATTCTAAATCGAAGT 57.399 29.630 0.00 0.00 0.00 3.01
1739 2684 9.651718 GCACATTATTCTAAATCGAAGTAAAGG 57.348 33.333 0.00 0.00 0.00 3.11
1740 2685 9.651718 CACATTATTCTAAATCGAAGTAAAGGC 57.348 33.333 0.00 0.00 0.00 4.35
1741 2686 9.391006 ACATTATTCTAAATCGAAGTAAAGGCA 57.609 29.630 0.00 0.00 0.00 4.75
1745 2690 7.739498 TTCTAAATCGAAGTAAAGGCAAACT 57.261 32.000 0.00 0.00 0.00 2.66
1746 2691 7.739498 TCTAAATCGAAGTAAAGGCAAACTT 57.261 32.000 0.00 0.00 42.52 2.66
1748 2693 8.287503 TCTAAATCGAAGTAAAGGCAAACTTTC 58.712 33.333 0.00 0.00 46.20 2.62
1749 2694 6.635030 AATCGAAGTAAAGGCAAACTTTCT 57.365 33.333 0.00 0.00 46.20 2.52
1750 2695 7.739498 AATCGAAGTAAAGGCAAACTTTCTA 57.261 32.000 0.00 0.00 46.20 2.10
1751 2696 6.780706 TCGAAGTAAAGGCAAACTTTCTAG 57.219 37.500 0.00 0.00 46.20 2.43
1752 2697 6.285990 TCGAAGTAAAGGCAAACTTTCTAGT 58.714 36.000 0.00 0.00 46.20 2.57
1753 2698 7.436118 TCGAAGTAAAGGCAAACTTTCTAGTA 58.564 34.615 0.00 0.00 46.20 1.82
1754 2699 8.092687 TCGAAGTAAAGGCAAACTTTCTAGTAT 58.907 33.333 0.00 0.00 46.20 2.12
1755 2700 9.362539 CGAAGTAAAGGCAAACTTTCTAGTATA 57.637 33.333 0.00 0.00 46.20 1.47
1788 2733 8.154649 ACGGCTTTATTACATTCATAGAAAGG 57.845 34.615 0.00 0.00 0.00 3.11
1804 2749 8.919145 TCATAGAAAGGAGATAAAAGAGTCCTC 58.081 37.037 0.00 0.00 38.55 3.71
1805 2750 6.215495 AGAAAGGAGATAAAAGAGTCCTCG 57.785 41.667 0.00 0.00 38.55 4.63
1807 2752 3.637769 AGGAGATAAAAGAGTCCTCGCT 58.362 45.455 0.00 0.00 34.02 4.93
1809 2754 4.098807 AGGAGATAAAAGAGTCCTCGCTTC 59.901 45.833 0.00 0.00 34.02 3.86
1813 2758 0.244178 AAAGAGTCCTCGCTTCCGTC 59.756 55.000 0.00 0.00 32.86 4.79
1861 2806 8.940397 AAAATCCTCACCTCATCTAAAAAGAA 57.060 30.769 0.00 0.00 0.00 2.52
1995 2944 9.844257 AAAGATAATCCTCACCTTCATCTAAAG 57.156 33.333 0.00 0.00 0.00 1.85
1996 2945 8.789767 AGATAATCCTCACCTTCATCTAAAGA 57.210 34.615 0.00 0.00 0.00 2.52
1997 2946 9.218525 AGATAATCCTCACCTTCATCTAAAGAA 57.781 33.333 0.00 0.00 0.00 2.52
1998 2947 9.838339 GATAATCCTCACCTTCATCTAAAGAAA 57.162 33.333 0.00 0.00 0.00 2.52
2002 2951 8.567285 TCCTCACCTTCATCTAAAGAAAATTC 57.433 34.615 0.00 0.00 0.00 2.17
2024 2973 1.305930 AAAGATTTCTCACCGCGGCC 61.306 55.000 28.58 4.16 0.00 6.13
2070 3019 3.723348 GTTGGTCGCCCTTCACGC 61.723 66.667 0.00 0.00 0.00 5.34
2084 3033 1.874019 CACGCGACGCTTAGAGCAT 60.874 57.895 15.93 0.00 42.58 3.79
2085 3034 1.874019 ACGCGACGCTTAGAGCATG 60.874 57.895 15.93 0.91 42.58 4.06
2086 3035 2.580470 CGCGACGCTTAGAGCATGG 61.580 63.158 19.02 0.00 42.58 3.66
2087 3036 1.519455 GCGACGCTTAGAGCATGGT 60.519 57.895 13.73 0.00 42.58 3.55
2088 3037 1.084370 GCGACGCTTAGAGCATGGTT 61.084 55.000 13.73 0.00 42.58 3.67
2089 3038 1.801395 GCGACGCTTAGAGCATGGTTA 60.801 52.381 13.73 0.00 42.58 2.85
2090 3039 2.120232 CGACGCTTAGAGCATGGTTAG 58.880 52.381 0.00 0.00 42.58 2.34
2091 3040 2.479730 CGACGCTTAGAGCATGGTTAGT 60.480 50.000 0.00 0.00 42.58 2.24
2092 3041 3.242969 CGACGCTTAGAGCATGGTTAGTA 60.243 47.826 0.00 0.00 42.58 1.82
2093 3042 4.679662 GACGCTTAGAGCATGGTTAGTAA 58.320 43.478 0.00 0.00 42.58 2.24
2094 3043 5.277857 ACGCTTAGAGCATGGTTAGTAAT 57.722 39.130 0.00 0.00 42.58 1.89
2095 3044 6.401047 ACGCTTAGAGCATGGTTAGTAATA 57.599 37.500 0.00 0.00 42.58 0.98
2096 3045 6.994221 ACGCTTAGAGCATGGTTAGTAATAT 58.006 36.000 0.00 0.00 42.58 1.28
2097 3046 8.118976 ACGCTTAGAGCATGGTTAGTAATATA 57.881 34.615 0.00 0.00 42.58 0.86
2098 3047 8.244802 ACGCTTAGAGCATGGTTAGTAATATAG 58.755 37.037 0.00 0.00 42.58 1.31
2099 3048 7.221067 CGCTTAGAGCATGGTTAGTAATATAGC 59.779 40.741 0.00 0.00 42.58 2.97
2100 3049 7.492994 GCTTAGAGCATGGTTAGTAATATAGCC 59.507 40.741 0.00 0.00 41.89 3.93
2101 3050 5.967088 AGAGCATGGTTAGTAATATAGCCG 58.033 41.667 0.00 0.00 0.00 5.52
2102 3051 5.086104 AGCATGGTTAGTAATATAGCCGG 57.914 43.478 0.00 0.00 0.00 6.13
2103 3052 3.621715 GCATGGTTAGTAATATAGCCGGC 59.378 47.826 21.89 21.89 0.00 6.13
2104 3053 4.623171 GCATGGTTAGTAATATAGCCGGCT 60.623 45.833 34.85 34.85 31.03 5.52
2105 3054 4.530710 TGGTTAGTAATATAGCCGGCTG 57.469 45.455 38.98 0.00 0.00 4.85
2106 3055 3.259902 GGTTAGTAATATAGCCGGCTGC 58.740 50.000 38.98 16.22 41.71 5.25
2119 3068 2.615493 GCCGGCTGCTGGTTATATACAT 60.615 50.000 27.25 0.00 36.87 2.29
2123 3072 4.271049 CGGCTGCTGGTTATATACATATGC 59.729 45.833 1.58 0.00 0.00 3.14
2125 3074 5.185454 GCTGCTGGTTATATACATATGCCA 58.815 41.667 1.58 0.00 32.33 4.92
2267 3401 4.020617 CTCCTGCCGTGGAAGCCA 62.021 66.667 0.00 0.00 35.43 4.75
2474 3622 9.442047 CTTTGTTCTATGAAGTCTAGTTTGGAT 57.558 33.333 0.00 0.00 0.00 3.41
2522 3670 4.467198 CGGAGCTAGGGAAGAAGTTTAA 57.533 45.455 0.00 0.00 0.00 1.52
2534 3682 4.126520 AGAAGTTTAAGGGGGCAAATGA 57.873 40.909 0.00 0.00 0.00 2.57
2539 3687 6.943899 AGTTTAAGGGGGCAAATGATAAAA 57.056 33.333 0.00 0.00 0.00 1.52
2540 3688 6.707290 AGTTTAAGGGGGCAAATGATAAAAC 58.293 36.000 0.00 0.00 0.00 2.43
2541 3689 6.271159 AGTTTAAGGGGGCAAATGATAAAACA 59.729 34.615 0.00 0.00 0.00 2.83
2542 3690 6.882768 TTAAGGGGGCAAATGATAAAACAT 57.117 33.333 0.00 0.00 0.00 2.71
2543 3691 4.758773 AGGGGGCAAATGATAAAACATG 57.241 40.909 0.00 0.00 0.00 3.21
2544 3692 3.118298 AGGGGGCAAATGATAAAACATGC 60.118 43.478 0.00 0.00 0.00 4.06
2545 3693 3.370315 GGGGGCAAATGATAAAACATGCA 60.370 43.478 0.00 0.00 0.00 3.96
2546 3694 3.872771 GGGGCAAATGATAAAACATGCAG 59.127 43.478 0.00 0.00 0.00 4.41
2547 3695 4.382901 GGGGCAAATGATAAAACATGCAGA 60.383 41.667 0.00 0.00 0.00 4.26
2548 3696 4.567959 GGGCAAATGATAAAACATGCAGAC 59.432 41.667 0.00 0.00 0.00 3.51
2549 3697 4.567959 GGCAAATGATAAAACATGCAGACC 59.432 41.667 0.00 0.00 0.00 3.85
2550 3698 5.413499 GCAAATGATAAAACATGCAGACCT 58.587 37.500 0.00 0.00 0.00 3.85
2551 3699 5.290158 GCAAATGATAAAACATGCAGACCTG 59.710 40.000 0.00 0.00 0.00 4.00
2552 3700 6.623486 CAAATGATAAAACATGCAGACCTGA 58.377 36.000 0.47 0.00 0.00 3.86
2553 3701 6.446781 AATGATAAAACATGCAGACCTGAG 57.553 37.500 0.47 0.00 0.00 3.35
2554 3702 4.264253 TGATAAAACATGCAGACCTGAGG 58.736 43.478 0.00 0.00 0.00 3.86
2555 3703 1.915141 AAAACATGCAGACCTGAGGG 58.085 50.000 2.38 0.00 38.88 4.30
2556 3704 0.038744 AAACATGCAGACCTGAGGGG 59.961 55.000 2.38 0.00 41.89 4.79
2557 3705 1.856539 AACATGCAGACCTGAGGGGG 61.857 60.000 2.38 0.00 40.03 5.40
2558 3706 3.415087 ATGCAGACCTGAGGGGGC 61.415 66.667 2.38 3.73 45.71 5.80
2561 3709 2.935481 CAGACCTGAGGGGGCCAA 60.935 66.667 4.39 0.00 46.87 4.52
2562 3710 2.121506 AGACCTGAGGGGGCCAAA 60.122 61.111 4.39 0.00 46.87 3.28
2563 3711 1.544917 AGACCTGAGGGGGCCAAAT 60.545 57.895 4.39 0.00 46.87 2.32
2564 3712 0.253630 AGACCTGAGGGGGCCAAATA 60.254 55.000 4.39 0.00 46.87 1.40
2565 3713 0.106669 GACCTGAGGGGGCCAAATAC 60.107 60.000 4.39 0.00 37.05 1.89
2566 3714 0.552615 ACCTGAGGGGGCCAAATACT 60.553 55.000 4.39 0.00 40.03 2.12
2567 3715 1.274767 ACCTGAGGGGGCCAAATACTA 60.275 52.381 4.39 0.00 40.03 1.82
2568 3716 1.850345 CCTGAGGGGGCCAAATACTAA 59.150 52.381 4.39 0.00 0.00 2.24
2569 3717 2.243736 CCTGAGGGGGCCAAATACTAAA 59.756 50.000 4.39 0.00 0.00 1.85
2873 4021 3.739922 CCCCCAGGAGCACACATA 58.260 61.111 0.00 0.00 33.47 2.29
2874 4022 1.528824 CCCCCAGGAGCACACATAG 59.471 63.158 0.00 0.00 33.47 2.23
2875 4023 1.153086 CCCCAGGAGCACACATAGC 60.153 63.158 0.00 0.00 0.00 2.97
2876 4024 1.630126 CCCCAGGAGCACACATAGCT 61.630 60.000 0.00 0.00 46.82 3.32
2882 4030 2.276869 AGCACACATAGCTCCGTCA 58.723 52.632 0.00 0.00 38.01 4.35
2883 4031 0.108615 AGCACACATAGCTCCGTCAC 60.109 55.000 0.00 0.00 38.01 3.67
2884 4032 0.108615 GCACACATAGCTCCGTCACT 60.109 55.000 0.00 0.00 0.00 3.41
2885 4033 1.633561 CACACATAGCTCCGTCACTG 58.366 55.000 0.00 0.00 0.00 3.66
2886 4034 1.067565 CACACATAGCTCCGTCACTGT 60.068 52.381 0.00 0.00 0.00 3.55
2887 4035 1.202582 ACACATAGCTCCGTCACTGTC 59.797 52.381 0.00 0.00 0.00 3.51
2888 4036 1.474478 CACATAGCTCCGTCACTGTCT 59.526 52.381 0.00 0.00 0.00 3.41
2889 4037 1.746220 ACATAGCTCCGTCACTGTCTC 59.254 52.381 0.00 0.00 0.00 3.36
2890 4038 1.018148 ATAGCTCCGTCACTGTCTCG 58.982 55.000 0.00 0.00 0.00 4.04
2891 4039 0.036671 TAGCTCCGTCACTGTCTCGA 60.037 55.000 0.00 0.00 0.00 4.04
2892 4040 1.135731 GCTCCGTCACTGTCTCGAG 59.864 63.158 5.93 5.93 0.00 4.04
2905 4053 2.351418 TGTCTCGAGTGTTTGCAGTTTG 59.649 45.455 13.13 0.00 0.00 2.93
2970 4121 7.209471 TGTTTAATTGCAGGTTCGAGTTTAT 57.791 32.000 0.00 0.00 0.00 1.40
3024 4175 1.021390 CGTGACCAGCAGATCCAACC 61.021 60.000 0.00 0.00 0.00 3.77
3279 4439 9.434275 TCTATGAACCTAAAATCTGAGATACCA 57.566 33.333 0.00 0.00 0.00 3.25
3516 4687 7.042321 GGATGTCATGGCATGTTGAATAAAATG 60.042 37.037 25.62 0.00 0.00 2.32
3618 4789 2.322355 AGTGCTTGCCATAGTGCTAG 57.678 50.000 0.00 0.00 37.20 3.42
3619 4790 1.556911 AGTGCTTGCCATAGTGCTAGT 59.443 47.619 0.00 0.00 36.62 2.57
3628 4799 5.800296 TGCCATAGTGCTAGTAGAAACAAA 58.200 37.500 0.00 0.00 0.00 2.83
3685 4856 1.533625 TTGCATGCCAAGTACTCCAC 58.466 50.000 16.68 0.00 0.00 4.02
4071 5253 7.479916 CGATCAAGTATTTGAAGTTGAGCTTTC 59.520 37.037 4.64 0.00 45.82 2.62
4072 5254 7.566760 TCAAGTATTTGAAGTTGAGCTTTCA 57.433 32.000 0.00 0.00 40.26 2.69
4210 5392 3.449737 CCCAGTTCATTGCAGATTTGGAT 59.550 43.478 7.45 0.00 0.00 3.41
4266 5448 9.176460 TCATTCATATTAAGTCACAGCATTGAA 57.824 29.630 0.00 0.00 0.00 2.69
4440 5630 2.851263 ATCCACCGTTTTCAGTAGCA 57.149 45.000 0.00 0.00 0.00 3.49
4660 5850 5.476614 TCTGATGACAAACTCTCAGATGTG 58.523 41.667 2.26 0.00 39.25 3.21
4720 5910 3.753272 ACAGGTATCTTGTGCAATGTGTC 59.247 43.478 0.00 0.00 0.00 3.67
4722 5912 4.005650 AGGTATCTTGTGCAATGTGTCAG 58.994 43.478 0.00 0.00 0.00 3.51
4724 5914 3.909776 ATCTTGTGCAATGTGTCAGTG 57.090 42.857 0.00 0.00 32.29 3.66
4760 5950 4.771577 ACCTGGACATCTGCTCATAGATAG 59.228 45.833 0.00 0.00 35.70 2.08
4931 9032 4.876107 GGCGAATAGAAGAGGAAATTGTGA 59.124 41.667 0.00 0.00 0.00 3.58
4947 9048 3.492102 TGTGACCAAGAAAGAGAAGGG 57.508 47.619 0.00 0.00 0.00 3.95
5083 9186 6.932960 TGTACCTTTTTAGTTAAGCTGAGGTC 59.067 38.462 0.00 0.00 0.00 3.85
5084 9187 6.189036 ACCTTTTTAGTTAAGCTGAGGTCT 57.811 37.500 0.00 0.00 0.00 3.85
5085 9188 5.998363 ACCTTTTTAGTTAAGCTGAGGTCTG 59.002 40.000 0.00 0.00 0.00 3.51
5088 9191 7.228706 CCTTTTTAGTTAAGCTGAGGTCTGAAA 59.771 37.037 0.00 0.00 0.00 2.69
5089 9192 7.492352 TTTTAGTTAAGCTGAGGTCTGAAAC 57.508 36.000 0.00 0.00 0.00 2.78
5160 9268 8.821686 TTATCCAATCTTTCCTAAATGCTGAA 57.178 30.769 0.00 0.00 0.00 3.02
5228 9337 8.522830 TCATGACTGAAACACTTCTTTTCTTTT 58.477 29.630 0.00 0.00 34.58 2.27
5261 9370 7.908082 TCATTACTGAAACTCTGTTTGTTTTCG 59.092 33.333 0.10 0.00 37.70 3.46
5328 9437 4.080687 ACACTGGAGTAGTAGTCTTCACC 58.919 47.826 4.99 0.00 37.60 4.02
5336 9445 5.011586 AGTAGTAGTCTTCACCCTTCACTC 58.988 45.833 0.00 0.00 0.00 3.51
5337 9446 4.120946 AGTAGTCTTCACCCTTCACTCT 57.879 45.455 0.00 0.00 0.00 3.24
5338 9447 4.484912 AGTAGTCTTCACCCTTCACTCTT 58.515 43.478 0.00 0.00 0.00 2.85
5339 9448 4.525100 AGTAGTCTTCACCCTTCACTCTTC 59.475 45.833 0.00 0.00 0.00 2.87
5340 9449 3.309296 AGTCTTCACCCTTCACTCTTCA 58.691 45.455 0.00 0.00 0.00 3.02
5341 9450 3.070302 AGTCTTCACCCTTCACTCTTCAC 59.930 47.826 0.00 0.00 0.00 3.18
5342 9451 3.070302 GTCTTCACCCTTCACTCTTCACT 59.930 47.826 0.00 0.00 0.00 3.41
5505 9614 9.672673 ACTGAATATTTCTTACATGTACAAGCT 57.327 29.630 4.68 0.00 0.00 3.74
5612 9721 4.673580 GCAACATGATTGGTAGCTGAACAG 60.674 45.833 0.00 0.00 0.00 3.16
5701 9810 2.033174 GCTTTTGCCATTTTGTTGTGGG 59.967 45.455 0.00 0.00 40.15 4.61
5790 9904 9.780186 AATAGGCCAGATACTAAAAATGTACTC 57.220 33.333 5.01 0.00 0.00 2.59
5791 9905 6.592870 AGGCCAGATACTAAAAATGTACTCC 58.407 40.000 5.01 0.00 0.00 3.85
5792 9906 5.763698 GGCCAGATACTAAAAATGTACTCCC 59.236 44.000 0.00 0.00 0.00 4.30
5793 9907 6.409349 GGCCAGATACTAAAAATGTACTCCCT 60.409 42.308 0.00 0.00 0.00 4.20
5794 9908 6.706716 GCCAGATACTAAAAATGTACTCCCTC 59.293 42.308 0.00 0.00 0.00 4.30
5795 9909 7.419172 GCCAGATACTAAAAATGTACTCCCTCT 60.419 40.741 0.00 0.00 0.00 3.69
5796 9910 7.928706 CCAGATACTAAAAATGTACTCCCTCTG 59.071 40.741 0.00 0.00 0.00 3.35
5797 9911 8.478877 CAGATACTAAAAATGTACTCCCTCTGT 58.521 37.037 0.00 0.00 0.00 3.41
5798 9912 9.710818 AGATACTAAAAATGTACTCCCTCTGTA 57.289 33.333 0.00 0.00 0.00 2.74
5799 9913 9.747293 GATACTAAAAATGTACTCCCTCTGTAC 57.253 37.037 0.00 0.00 40.27 2.90
5800 9914 6.944096 ACTAAAAATGTACTCCCTCTGTACC 58.056 40.000 0.00 0.00 39.42 3.34
5801 9915 5.836024 AAAAATGTACTCCCTCTGTACCA 57.164 39.130 0.00 0.00 39.42 3.25
5802 9916 5.836024 AAAATGTACTCCCTCTGTACCAA 57.164 39.130 0.00 0.00 39.42 3.67
5803 9917 5.836024 AAATGTACTCCCTCTGTACCAAA 57.164 39.130 0.00 0.00 39.42 3.28
5804 9918 5.836024 AATGTACTCCCTCTGTACCAAAA 57.164 39.130 0.00 0.00 39.42 2.44
5805 9919 6.388619 AATGTACTCCCTCTGTACCAAAAT 57.611 37.500 0.00 0.00 39.42 1.82
5806 9920 7.504926 AATGTACTCCCTCTGTACCAAAATA 57.495 36.000 0.00 0.00 39.42 1.40
5807 9921 6.290294 TGTACTCCCTCTGTACCAAAATAC 57.710 41.667 0.00 0.00 39.42 1.89
5808 9922 6.021030 TGTACTCCCTCTGTACCAAAATACT 58.979 40.000 0.00 0.00 39.42 2.12
5809 9923 6.499350 TGTACTCCCTCTGTACCAAAATACTT 59.501 38.462 0.00 0.00 39.42 2.24
5810 9924 5.805728 ACTCCCTCTGTACCAAAATACTTG 58.194 41.667 0.00 0.00 0.00 3.16
5811 9925 5.309806 ACTCCCTCTGTACCAAAATACTTGT 59.690 40.000 0.00 0.00 0.00 3.16
5812 9926 6.499350 ACTCCCTCTGTACCAAAATACTTGTA 59.501 38.462 0.00 0.00 0.00 2.41
5813 9927 6.942976 TCCCTCTGTACCAAAATACTTGTAG 58.057 40.000 0.00 0.00 0.00 2.74
5814 9928 6.499350 TCCCTCTGTACCAAAATACTTGTAGT 59.501 38.462 0.00 0.00 0.00 2.73
5815 9929 7.016858 TCCCTCTGTACCAAAATACTTGTAGTT 59.983 37.037 0.00 0.00 0.00 2.24
5816 9930 7.119262 CCCTCTGTACCAAAATACTTGTAGTTG 59.881 40.741 0.00 0.00 0.00 3.16
5817 9931 7.119262 CCTCTGTACCAAAATACTTGTAGTTGG 59.881 40.741 17.42 17.42 43.60 3.77
5818 9932 6.938030 TCTGTACCAAAATACTTGTAGTTGGG 59.062 38.462 20.55 16.74 42.52 4.12
5819 9933 6.005198 TGTACCAAAATACTTGTAGTTGGGG 58.995 40.000 20.55 15.16 42.52 4.96
5820 9934 4.412843 ACCAAAATACTTGTAGTTGGGGG 58.587 43.478 20.55 13.49 42.52 5.40
5821 9935 4.106663 ACCAAAATACTTGTAGTTGGGGGA 59.893 41.667 20.55 0.00 42.52 4.81
5822 9936 5.081032 CCAAAATACTTGTAGTTGGGGGAA 58.919 41.667 13.79 0.00 36.00 3.97
5823 9937 5.540719 CCAAAATACTTGTAGTTGGGGGAAA 59.459 40.000 13.79 0.00 36.00 3.13
5824 9938 6.212589 CCAAAATACTTGTAGTTGGGGGAAAT 59.787 38.462 13.79 0.00 36.00 2.17
5825 9939 7.256511 CCAAAATACTTGTAGTTGGGGGAAATT 60.257 37.037 13.79 0.00 36.00 1.82
5826 9940 8.808092 CAAAATACTTGTAGTTGGGGGAAATTA 58.192 33.333 0.00 0.00 0.00 1.40
5827 9941 8.589701 AAATACTTGTAGTTGGGGGAAATTAG 57.410 34.615 0.00 0.00 0.00 1.73
5828 9942 5.853572 ACTTGTAGTTGGGGGAAATTAGA 57.146 39.130 0.00 0.00 0.00 2.10
5829 9943 5.567430 ACTTGTAGTTGGGGGAAATTAGAC 58.433 41.667 0.00 0.00 0.00 2.59
5830 9944 5.312443 ACTTGTAGTTGGGGGAAATTAGACT 59.688 40.000 0.00 0.00 0.00 3.24
5831 9945 6.502863 ACTTGTAGTTGGGGGAAATTAGACTA 59.497 38.462 0.00 0.00 0.00 2.59
5832 9946 6.555463 TGTAGTTGGGGGAAATTAGACTAG 57.445 41.667 0.00 0.00 0.00 2.57
5833 9947 6.027482 TGTAGTTGGGGGAAATTAGACTAGT 58.973 40.000 0.00 0.00 0.00 2.57
5834 9948 6.502863 TGTAGTTGGGGGAAATTAGACTAGTT 59.497 38.462 0.00 0.00 0.00 2.24
5835 9949 6.464530 AGTTGGGGGAAATTAGACTAGTTT 57.535 37.500 0.00 2.84 0.00 2.66
5836 9950 6.482524 AGTTGGGGGAAATTAGACTAGTTTC 58.517 40.000 17.75 17.75 34.72 2.78
5843 9957 7.612668 GGAAATTAGACTAGTTTCCTCCAAC 57.387 40.000 29.11 11.81 45.67 3.77
5844 9958 7.395617 GGAAATTAGACTAGTTTCCTCCAACT 58.604 38.462 29.11 0.00 45.67 3.16
5845 9959 8.537858 GGAAATTAGACTAGTTTCCTCCAACTA 58.462 37.037 29.11 0.00 45.67 2.24
5846 9960 9.368674 GAAATTAGACTAGTTTCCTCCAACTAC 57.631 37.037 15.97 0.00 38.07 2.73
5847 9961 8.431910 AATTAGACTAGTTTCCTCCAACTACA 57.568 34.615 0.00 0.00 38.07 2.74
5848 9962 7.844493 TTAGACTAGTTTCCTCCAACTACAA 57.156 36.000 0.00 0.00 38.07 2.41
5849 9963 6.347859 AGACTAGTTTCCTCCAACTACAAG 57.652 41.667 0.00 0.00 38.07 3.16
5850 9964 5.839606 AGACTAGTTTCCTCCAACTACAAGT 59.160 40.000 0.00 0.00 38.07 3.16
5851 9965 7.008941 AGACTAGTTTCCTCCAACTACAAGTA 58.991 38.462 0.00 0.00 38.07 2.24
5852 9966 7.674772 AGACTAGTTTCCTCCAACTACAAGTAT 59.325 37.037 0.00 0.00 38.07 2.12
5853 9967 8.203681 ACTAGTTTCCTCCAACTACAAGTATT 57.796 34.615 0.00 0.00 38.07 1.89
5854 9968 8.657712 ACTAGTTTCCTCCAACTACAAGTATTT 58.342 33.333 0.00 0.00 38.07 1.40
5855 9969 9.503399 CTAGTTTCCTCCAACTACAAGTATTTT 57.497 33.333 0.00 0.00 38.07 1.82
5856 9970 8.166422 AGTTTCCTCCAACTACAAGTATTTTG 57.834 34.615 0.00 0.00 35.10 2.44
5857 9971 7.996644 AGTTTCCTCCAACTACAAGTATTTTGA 59.003 33.333 0.00 0.00 35.10 2.69
5858 9972 8.793592 GTTTCCTCCAACTACAAGTATTTTGAT 58.206 33.333 0.00 0.00 0.00 2.57
5860 9974 9.444600 TTCCTCCAACTACAAGTATTTTGATAC 57.555 33.333 0.00 0.00 0.00 2.24
5861 9975 8.598916 TCCTCCAACTACAAGTATTTTGATACA 58.401 33.333 0.07 0.00 0.00 2.29
5862 9976 8.883731 CCTCCAACTACAAGTATTTTGATACAG 58.116 37.037 0.07 0.00 0.00 2.74
5863 9977 9.436957 CTCCAACTACAAGTATTTTGATACAGT 57.563 33.333 0.07 1.21 0.00 3.55
5864 9978 9.214957 TCCAACTACAAGTATTTTGATACAGTG 57.785 33.333 0.00 0.00 0.00 3.66
5865 9979 8.450964 CCAACTACAAGTATTTTGATACAGTGG 58.549 37.037 0.00 2.96 0.00 4.00
5866 9980 8.450964 CAACTACAAGTATTTTGATACAGTGGG 58.549 37.037 0.00 0.40 0.00 4.61
5867 9981 7.913789 ACTACAAGTATTTTGATACAGTGGGA 58.086 34.615 0.00 0.00 0.00 4.37
5868 9982 8.041323 ACTACAAGTATTTTGATACAGTGGGAG 58.959 37.037 0.00 0.00 0.00 4.30
5869 9983 6.779860 ACAAGTATTTTGATACAGTGGGAGT 58.220 36.000 0.00 0.00 0.00 3.85
5870 9984 7.913789 ACAAGTATTTTGATACAGTGGGAGTA 58.086 34.615 0.00 0.00 0.00 2.59
5976 10254 4.120589 GTGCTACTATTTTCTTCTCGGGG 58.879 47.826 0.00 0.00 0.00 5.73
6108 10386 6.821388 AGTCTAACCAGAATATAGCACTTGG 58.179 40.000 0.00 0.00 30.85 3.61
6141 10419 6.273825 ACTCAGGTGATTAATTGTACTAGCG 58.726 40.000 0.00 0.00 0.00 4.26
6172 10450 2.621055 TGGAAAGTATGCGCAACAAACT 59.379 40.909 17.11 13.19 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 181 5.446860 CTCCCTACTTGTGGATGTCTACTA 58.553 45.833 0.00 0.00 0.00 1.82
486 489 8.740369 GCACATCAGAATTCAAATCTATTTTCG 58.260 33.333 8.44 0.00 0.00 3.46
573 577 3.633065 TGTCCCTTTACTTTGGAAAACGG 59.367 43.478 0.00 0.00 0.00 4.44
613 618 3.243301 CCGCTAATACATGTGACTACGGT 60.243 47.826 9.11 0.00 32.53 4.83
806 1750 1.905215 CACCACAGAGAGAGGGAATGT 59.095 52.381 0.00 0.00 31.39 2.71
821 1765 1.260561 CTACAGCGTGTTTGACACCAC 59.739 52.381 5.70 0.00 45.93 4.16
862 1806 0.469144 TTGTTTCCCCTCCCACAAGC 60.469 55.000 0.00 0.00 0.00 4.01
866 1810 3.283020 GGATTGTTTCCCCTCCCAC 57.717 57.895 0.00 0.00 38.75 4.61
879 1823 0.612744 AAATTTGGGCCACGGGATTG 59.387 50.000 5.23 0.00 0.00 2.67
941 1886 2.668945 CACGCTTTGGTTTTCCGTTTTT 59.331 40.909 0.00 0.00 44.36 1.94
1012 1957 2.835895 GAGGAGGCGGGAGGAGAC 60.836 72.222 0.00 0.00 0.00 3.36
1058 2003 0.391597 GGGAGAAGTTGTGGTGACGA 59.608 55.000 0.00 0.00 0.00 4.20
1230 2175 3.997064 CTCCTCCAACCTCTGCGCG 62.997 68.421 0.00 0.00 0.00 6.86
1390 2335 1.338136 AAGTCGGGCCGGAAGATGAT 61.338 55.000 27.98 0.97 0.00 2.45
1494 2439 2.365617 ACAGAGACTGTCACCGATTTGT 59.634 45.455 10.88 1.25 41.21 2.83
1501 2446 4.038162 AGTTAGTTCACAGAGACTGTCACC 59.962 45.833 10.88 1.40 43.43 4.02
1522 2467 3.246112 TGGCGCCCAACCACTAGT 61.246 61.111 26.77 0.00 30.29 2.57
1557 2502 3.068691 CGTCCTCCTCCCAAGCGA 61.069 66.667 0.00 0.00 0.00 4.93
1564 2509 7.677454 TTTTAAAATAGAAACGTCCTCCTCC 57.323 36.000 0.00 0.00 0.00 4.30
1611 2556 8.954350 GGATCGGAGTAGTATAATTGCTAGTAA 58.046 37.037 0.00 0.00 0.00 2.24
1612 2557 8.105197 TGGATCGGAGTAGTATAATTGCTAGTA 58.895 37.037 0.00 0.00 0.00 1.82
1613 2558 6.946583 TGGATCGGAGTAGTATAATTGCTAGT 59.053 38.462 0.00 0.00 0.00 2.57
1614 2559 7.392494 TGGATCGGAGTAGTATAATTGCTAG 57.608 40.000 0.00 0.00 0.00 3.42
1615 2560 7.770366 TTGGATCGGAGTAGTATAATTGCTA 57.230 36.000 0.00 0.00 0.00 3.49
1616 2561 6.665992 TTGGATCGGAGTAGTATAATTGCT 57.334 37.500 0.00 0.00 0.00 3.91
1617 2562 7.724305 TTTTGGATCGGAGTAGTATAATTGC 57.276 36.000 0.00 0.00 0.00 3.56
1708 2653 9.601217 ACTTCGATTTAGAATAATGTGCTTACT 57.399 29.630 0.00 0.00 0.00 2.24
1713 2658 9.651718 CCTTTACTTCGATTTAGAATAATGTGC 57.348 33.333 0.00 0.00 0.00 4.57
1714 2659 9.651718 GCCTTTACTTCGATTTAGAATAATGTG 57.348 33.333 0.00 0.00 0.00 3.21
1715 2660 9.391006 TGCCTTTACTTCGATTTAGAATAATGT 57.609 29.630 0.00 0.00 0.00 2.71
1719 2664 9.444600 AGTTTGCCTTTACTTCGATTTAGAATA 57.555 29.630 0.00 0.00 0.00 1.75
1720 2665 8.336801 AGTTTGCCTTTACTTCGATTTAGAAT 57.663 30.769 0.00 0.00 0.00 2.40
1721 2666 7.739498 AGTTTGCCTTTACTTCGATTTAGAA 57.261 32.000 0.00 0.00 0.00 2.10
1722 2667 7.739498 AAGTTTGCCTTTACTTCGATTTAGA 57.261 32.000 0.00 0.00 28.79 2.10
1723 2668 8.290325 AGAAAGTTTGCCTTTACTTCGATTTAG 58.710 33.333 0.00 0.00 43.47 1.85
1724 2669 8.161699 AGAAAGTTTGCCTTTACTTCGATTTA 57.838 30.769 0.00 0.00 43.47 1.40
1725 2670 7.039313 AGAAAGTTTGCCTTTACTTCGATTT 57.961 32.000 0.00 0.00 43.47 2.17
1726 2671 6.635030 AGAAAGTTTGCCTTTACTTCGATT 57.365 33.333 0.00 0.00 43.47 3.34
1727 2672 6.935208 ACTAGAAAGTTTGCCTTTACTTCGAT 59.065 34.615 0.00 0.00 43.47 3.59
1728 2673 6.285990 ACTAGAAAGTTTGCCTTTACTTCGA 58.714 36.000 0.00 0.00 43.47 3.71
1729 2674 6.541111 ACTAGAAAGTTTGCCTTTACTTCG 57.459 37.500 0.00 0.00 43.47 3.79
1788 2733 4.364860 GGAAGCGAGGACTCTTTTATCTC 58.635 47.826 0.00 0.00 0.00 2.75
1837 2782 8.940397 TTTCTTTTTAGATGAGGTGAGGATTT 57.060 30.769 0.00 0.00 0.00 2.17
1838 2783 8.940397 TTTTCTTTTTAGATGAGGTGAGGATT 57.060 30.769 0.00 0.00 0.00 3.01
1839 2784 8.940397 TTTTTCTTTTTAGATGAGGTGAGGAT 57.060 30.769 0.00 0.00 0.00 3.24
1867 2812 1.829222 GCTGGTAGGCTGTAGTGGTAA 59.171 52.381 0.00 0.00 0.00 2.85
1868 2813 1.481871 GCTGGTAGGCTGTAGTGGTA 58.518 55.000 0.00 0.00 0.00 3.25
1870 2815 1.141881 CGCTGGTAGGCTGTAGTGG 59.858 63.158 0.00 0.00 0.00 4.00
1872 2817 1.668101 GCTCGCTGGTAGGCTGTAGT 61.668 60.000 0.00 0.00 0.00 2.73
1873 2818 1.066587 GCTCGCTGGTAGGCTGTAG 59.933 63.158 0.00 0.00 0.00 2.74
1874 2819 2.771639 CGCTCGCTGGTAGGCTGTA 61.772 63.158 0.00 0.00 0.00 2.74
1875 2820 4.135153 CGCTCGCTGGTAGGCTGT 62.135 66.667 0.00 0.00 0.00 4.40
1930 2879 5.805728 TCTTTTTAGATGAAGGTGAGGACC 58.194 41.667 0.00 0.00 43.52 4.46
1995 2944 6.128822 GCGGTGAGAAATCTTTTGGAATTTTC 60.129 38.462 0.00 0.00 0.00 2.29
1996 2945 5.696270 GCGGTGAGAAATCTTTTGGAATTTT 59.304 36.000 0.00 0.00 0.00 1.82
1997 2946 5.230182 GCGGTGAGAAATCTTTTGGAATTT 58.770 37.500 0.00 0.00 0.00 1.82
1998 2947 4.615912 CGCGGTGAGAAATCTTTTGGAATT 60.616 41.667 0.00 0.00 0.00 2.17
1999 2948 3.119849 CGCGGTGAGAAATCTTTTGGAAT 60.120 43.478 0.00 0.00 0.00 3.01
2002 2951 1.135689 CCGCGGTGAGAAATCTTTTGG 60.136 52.381 19.50 0.00 0.00 3.28
2070 3019 2.120232 CTAACCATGCTCTAAGCGTCG 58.880 52.381 0.00 0.00 46.26 5.12
2084 3033 3.306502 GCAGCCGGCTATATTACTAACCA 60.307 47.826 32.30 0.00 40.25 3.67
2085 3034 3.259902 GCAGCCGGCTATATTACTAACC 58.740 50.000 32.30 1.84 40.25 2.85
2098 3047 1.270625 TGTATATAACCAGCAGCCGGC 60.271 52.381 21.89 21.89 45.30 6.13
2099 3048 2.831685 TGTATATAACCAGCAGCCGG 57.168 50.000 0.00 0.00 0.00 6.13
2100 3049 4.271049 GCATATGTATATAACCAGCAGCCG 59.729 45.833 4.29 0.00 0.00 5.52
2101 3050 4.576463 GGCATATGTATATAACCAGCAGCC 59.424 45.833 4.29 0.00 0.00 4.85
2102 3051 5.185454 TGGCATATGTATATAACCAGCAGC 58.815 41.667 4.29 0.00 30.12 5.25
2103 3052 6.825213 ACATGGCATATGTATATAACCAGCAG 59.175 38.462 0.00 5.91 34.46 4.24
2104 3053 6.720309 ACATGGCATATGTATATAACCAGCA 58.280 36.000 0.00 0.00 34.46 4.41
2105 3054 6.823182 TGACATGGCATATGTATATAACCAGC 59.177 38.462 0.00 0.00 34.46 4.85
2106 3055 8.969260 ATGACATGGCATATGTATATAACCAG 57.031 34.615 13.88 5.78 34.46 4.00
2119 3068 5.059161 GCTAACTCTTGATGACATGGCATA 58.941 41.667 15.77 0.00 0.00 3.14
2123 3072 7.741027 ATATTGCTAACTCTTGATGACATGG 57.259 36.000 0.00 0.00 0.00 3.66
2154 3103 8.932945 TTAAGAGCAAGTACAATAGTGATGAG 57.067 34.615 0.00 0.00 0.00 2.90
2267 3401 2.286523 CCCGGTGAAGACCAGCTCT 61.287 63.158 0.00 0.00 43.33 4.09
2474 3622 2.417379 GCTCGAGACCTATGACTGCAAA 60.417 50.000 18.75 0.00 0.00 3.68
2522 3670 3.118298 GCATGTTTTATCATTTGCCCCCT 60.118 43.478 0.00 0.00 0.00 4.79
2534 3682 3.624777 CCCTCAGGTCTGCATGTTTTAT 58.375 45.455 0.00 0.00 0.00 1.40
2539 3687 2.304056 CCCCCTCAGGTCTGCATGT 61.304 63.158 0.00 0.00 0.00 3.21
2540 3688 2.593978 CCCCCTCAGGTCTGCATG 59.406 66.667 0.00 0.00 0.00 4.06
2541 3689 3.415087 GCCCCCTCAGGTCTGCAT 61.415 66.667 0.00 0.00 0.00 3.96
2544 3692 1.867595 ATTTGGCCCCCTCAGGTCTG 61.868 60.000 0.00 0.00 30.64 3.51
2545 3693 0.253630 TATTTGGCCCCCTCAGGTCT 60.254 55.000 0.00 0.00 30.64 3.85
2546 3694 0.106669 GTATTTGGCCCCCTCAGGTC 60.107 60.000 0.00 0.00 0.00 3.85
2547 3695 0.552615 AGTATTTGGCCCCCTCAGGT 60.553 55.000 0.00 0.00 0.00 4.00
2548 3696 1.518367 TAGTATTTGGCCCCCTCAGG 58.482 55.000 0.00 0.00 0.00 3.86
2549 3697 3.662759 TTTAGTATTTGGCCCCCTCAG 57.337 47.619 0.00 0.00 0.00 3.35
2550 3698 4.618378 AATTTAGTATTTGGCCCCCTCA 57.382 40.909 0.00 0.00 0.00 3.86
2551 3699 5.715279 GGATAATTTAGTATTTGGCCCCCTC 59.285 44.000 0.00 0.00 0.00 4.30
2552 3700 5.378681 AGGATAATTTAGTATTTGGCCCCCT 59.621 40.000 0.00 0.00 0.00 4.79
2553 3701 5.651303 AGGATAATTTAGTATTTGGCCCCC 58.349 41.667 0.00 0.00 0.00 5.40
2554 3702 8.895141 ATAAGGATAATTTAGTATTTGGCCCC 57.105 34.615 0.00 0.00 0.00 5.80
2555 3703 9.755122 AGATAAGGATAATTTAGTATTTGGCCC 57.245 33.333 0.00 0.00 0.00 5.80
2856 4004 1.528824 CTATGTGTGCTCCTGGGGG 59.471 63.158 0.00 0.00 0.00 5.40
2857 4005 1.153086 GCTATGTGTGCTCCTGGGG 60.153 63.158 0.00 0.00 0.00 4.96
2858 4006 1.910722 AGCTATGTGTGCTCCTGGG 59.089 57.895 0.00 0.00 35.67 4.45
2864 4012 0.108615 GTGACGGAGCTATGTGTGCT 60.109 55.000 0.00 0.00 44.24 4.40
2865 4013 0.108615 AGTGACGGAGCTATGTGTGC 60.109 55.000 0.00 0.00 0.00 4.57
2866 4014 1.067565 ACAGTGACGGAGCTATGTGTG 60.068 52.381 0.00 0.00 0.00 3.82
2867 4015 1.202582 GACAGTGACGGAGCTATGTGT 59.797 52.381 0.00 0.00 0.00 3.72
2868 4016 1.474478 AGACAGTGACGGAGCTATGTG 59.526 52.381 0.00 0.00 0.00 3.21
2869 4017 1.746220 GAGACAGTGACGGAGCTATGT 59.254 52.381 0.00 0.00 0.00 2.29
2870 4018 1.268285 CGAGACAGTGACGGAGCTATG 60.268 57.143 0.00 0.00 0.00 2.23
2871 4019 1.018148 CGAGACAGTGACGGAGCTAT 58.982 55.000 0.00 0.00 0.00 2.97
2872 4020 0.036671 TCGAGACAGTGACGGAGCTA 60.037 55.000 0.00 0.00 0.00 3.32
2873 4021 1.302383 CTCGAGACAGTGACGGAGCT 61.302 60.000 6.58 0.00 0.00 4.09
2874 4022 1.135731 CTCGAGACAGTGACGGAGC 59.864 63.158 6.58 0.00 0.00 4.70
2875 4023 0.167033 CACTCGAGACAGTGACGGAG 59.833 60.000 21.68 6.17 45.92 4.63
2876 4024 0.534427 ACACTCGAGACAGTGACGGA 60.534 55.000 21.68 0.00 45.92 4.69
2877 4025 0.311165 AACACTCGAGACAGTGACGG 59.689 55.000 21.68 0.00 45.92 4.79
2878 4026 1.781429 CAAACACTCGAGACAGTGACG 59.219 52.381 21.68 0.00 45.92 4.35
2879 4027 1.523095 GCAAACACTCGAGACAGTGAC 59.477 52.381 21.68 4.51 45.92 3.67
2880 4028 1.136110 TGCAAACACTCGAGACAGTGA 59.864 47.619 21.68 0.00 45.92 3.41
2882 4030 1.137086 ACTGCAAACACTCGAGACAGT 59.863 47.619 21.68 17.31 32.32 3.55
2883 4031 1.858091 ACTGCAAACACTCGAGACAG 58.142 50.000 21.68 16.72 0.00 3.51
2884 4032 2.309528 AACTGCAAACACTCGAGACA 57.690 45.000 21.68 6.18 0.00 3.41
2885 4033 2.851008 GCAAACTGCAAACACTCGAGAC 60.851 50.000 21.68 1.57 44.26 3.36
2886 4034 1.330521 GCAAACTGCAAACACTCGAGA 59.669 47.619 21.68 0.00 44.26 4.04
2887 4035 1.746760 GCAAACTGCAAACACTCGAG 58.253 50.000 11.84 11.84 44.26 4.04
2888 4036 3.916061 GCAAACTGCAAACACTCGA 57.084 47.368 0.00 0.00 44.26 4.04
2905 4053 3.665745 TCTTGAAGGCCTTGAATTTGC 57.334 42.857 26.25 6.97 0.00 3.68
2955 4103 2.884827 ACCGTATAAACTCGAACCTGC 58.115 47.619 0.00 0.00 0.00 4.85
2956 4104 5.401550 TGTTACCGTATAAACTCGAACCTG 58.598 41.667 0.00 0.00 0.00 4.00
3226 4378 8.685838 AAGCACTACACCAAAAGAATAAAGTA 57.314 30.769 0.00 0.00 0.00 2.24
3227 4379 7.582667 AAGCACTACACCAAAAGAATAAAGT 57.417 32.000 0.00 0.00 0.00 2.66
3228 4380 8.871686 AAAAGCACTACACCAAAAGAATAAAG 57.128 30.769 0.00 0.00 0.00 1.85
3243 4403 9.989869 GATTTTAGGTTCATAGAAAAGCACTAC 57.010 33.333 0.00 0.00 29.82 2.73
3516 4687 2.288948 TGTTCATGTGCTTCCAATTGCC 60.289 45.455 0.00 0.00 0.00 4.52
3571 4742 0.305617 GAAAAACGGTCCGTGTGTCC 59.694 55.000 19.67 1.42 39.99 4.02
3685 4856 4.887655 GGTGGTAACCATAGGATTTTCCTG 59.112 45.833 6.32 0.00 46.15 3.86
4071 5253 8.402326 TGTAGTATCGTAGCTGTGTAAAATTG 57.598 34.615 0.00 0.00 0.00 2.32
4072 5254 8.991243 TTGTAGTATCGTAGCTGTGTAAAATT 57.009 30.769 0.00 0.00 0.00 1.82
4266 5448 9.975218 AGTCACATAATATAACTGGGAAACTTT 57.025 29.630 0.00 0.00 0.00 2.66
4288 5470 8.623903 GGCAAGATTGATAATGAACATAAGTCA 58.376 33.333 0.00 0.00 0.00 3.41
4428 5618 4.458708 CTTTCGCTTCTGCTACTGAAAAC 58.541 43.478 0.00 0.00 36.97 2.43
4440 5630 5.820947 TGTTAGTTTTTCTCCTTTCGCTTCT 59.179 36.000 0.00 0.00 0.00 2.85
4720 5910 1.000163 AGGTCGTCAGTAGTTGCACTG 60.000 52.381 0.00 0.00 46.04 3.66
4722 5912 1.419374 CAGGTCGTCAGTAGTTGCAC 58.581 55.000 0.00 0.00 0.00 4.57
4724 5914 0.601558 TCCAGGTCGTCAGTAGTTGC 59.398 55.000 0.00 0.00 0.00 4.17
4725 5915 1.611977 TGTCCAGGTCGTCAGTAGTTG 59.388 52.381 0.00 0.00 0.00 3.16
4783 8884 7.779798 TGGCAATAGAAGTAAAGCCATAGAAAT 59.220 33.333 0.00 0.00 46.25 2.17
4804 8905 8.347004 TGATTGAACAAGACTATTATTGGCAA 57.653 30.769 0.68 0.68 32.92 4.52
4913 9014 7.020827 TCTTGGTCACAATTTCCTCTTCTAT 57.979 36.000 0.00 0.00 35.73 1.98
4914 9015 6.433847 TCTTGGTCACAATTTCCTCTTCTA 57.566 37.500 0.00 0.00 35.73 2.10
4931 9032 1.450360 AGCCCCTTCTCTTTCTTGGT 58.550 50.000 0.00 0.00 0.00 3.67
5096 9199 9.149225 GCTACACTTGATCTCCTAATTGATATG 57.851 37.037 0.00 0.00 0.00 1.78
5097 9200 8.874156 TGCTACACTTGATCTCCTAATTGATAT 58.126 33.333 0.00 0.00 0.00 1.63
5132 9240 7.650903 CAGCATTTAGGAAAGATTGGATAAAGC 59.349 37.037 0.00 0.00 0.00 3.51
5141 9249 8.302438 CAGAAAGTTCAGCATTTAGGAAAGATT 58.698 33.333 0.00 0.00 0.00 2.40
5160 9268 2.373169 TGGTGGCATCTTCTCAGAAAGT 59.627 45.455 0.00 0.00 30.76 2.66
5228 9337 8.974060 AACAGAGTTTCAGTAATGAGGTTAAA 57.026 30.769 0.00 0.00 0.00 1.52
5261 9370 3.118592 ACCTCGTTCCTCTTTGGATCATC 60.119 47.826 0.00 0.00 45.68 2.92
5328 9437 5.230942 ACGATTTACAGTGAAGAGTGAAGG 58.769 41.667 0.00 0.00 0.00 3.46
5336 9445 7.700322 ATATGCTGTACGATTTACAGTGAAG 57.300 36.000 11.94 0.00 44.89 3.02
5337 9446 8.487313 AAATATGCTGTACGATTTACAGTGAA 57.513 30.769 11.94 1.26 44.89 3.18
5338 9447 7.979537 AGAAATATGCTGTACGATTTACAGTGA 59.020 33.333 11.94 1.83 44.89 3.41
5339 9448 8.058328 CAGAAATATGCTGTACGATTTACAGTG 58.942 37.037 11.94 0.00 44.89 3.66
5340 9449 7.254455 GCAGAAATATGCTGTACGATTTACAGT 60.254 37.037 11.94 0.00 44.89 3.55
5341 9450 7.065894 GCAGAAATATGCTGTACGATTTACAG 58.934 38.462 7.01 7.01 45.62 2.74
5342 9451 6.536941 TGCAGAAATATGCTGTACGATTTACA 59.463 34.615 1.42 0.00 46.63 2.41
5595 9704 4.020307 TGATGACTGTTCAGCTACCAATCA 60.020 41.667 0.00 0.00 39.05 2.57
5689 9798 2.848691 CAATGGCACCCACAACAAAAT 58.151 42.857 0.00 0.00 35.80 1.82
5788 9902 5.805728 ACAAGTATTTTGGTACAGAGGGAG 58.194 41.667 0.00 0.00 42.39 4.30
5789 9903 5.836024 ACAAGTATTTTGGTACAGAGGGA 57.164 39.130 0.00 0.00 42.39 4.20
5790 9904 6.708285 ACTACAAGTATTTTGGTACAGAGGG 58.292 40.000 0.00 0.00 42.39 4.30
5791 9905 7.119262 CCAACTACAAGTATTTTGGTACAGAGG 59.881 40.741 10.48 0.00 42.39 3.69
5792 9906 7.119262 CCCAACTACAAGTATTTTGGTACAGAG 59.881 40.741 14.71 1.86 42.39 3.35
5793 9907 6.938030 CCCAACTACAAGTATTTTGGTACAGA 59.062 38.462 14.71 0.00 42.39 3.41
5794 9908 6.150474 CCCCAACTACAAGTATTTTGGTACAG 59.850 42.308 14.71 4.95 42.39 2.74
5795 9909 6.005198 CCCCAACTACAAGTATTTTGGTACA 58.995 40.000 14.71 0.00 0.00 2.90
5796 9910 5.416639 CCCCCAACTACAAGTATTTTGGTAC 59.583 44.000 14.71 0.00 0.00 3.34
5797 9911 5.312708 TCCCCCAACTACAAGTATTTTGGTA 59.687 40.000 14.71 0.00 0.00 3.25
5798 9912 4.106663 TCCCCCAACTACAAGTATTTTGGT 59.893 41.667 14.71 0.00 0.00 3.67
5799 9913 4.668636 TCCCCCAACTACAAGTATTTTGG 58.331 43.478 11.25 11.25 0.00 3.28
5800 9914 6.658188 TTTCCCCCAACTACAAGTATTTTG 57.342 37.500 0.00 0.00 0.00 2.44
5801 9915 7.865530 AATTTCCCCCAACTACAAGTATTTT 57.134 32.000 0.00 0.00 0.00 1.82
5802 9916 8.395605 TCTAATTTCCCCCAACTACAAGTATTT 58.604 33.333 0.00 0.00 0.00 1.40
5803 9917 7.832685 GTCTAATTTCCCCCAACTACAAGTATT 59.167 37.037 0.00 0.00 0.00 1.89
5804 9918 7.184022 AGTCTAATTTCCCCCAACTACAAGTAT 59.816 37.037 0.00 0.00 0.00 2.12
5805 9919 6.502863 AGTCTAATTTCCCCCAACTACAAGTA 59.497 38.462 0.00 0.00 0.00 2.24
5806 9920 5.312443 AGTCTAATTTCCCCCAACTACAAGT 59.688 40.000 0.00 0.00 0.00 3.16
5807 9921 5.816682 AGTCTAATTTCCCCCAACTACAAG 58.183 41.667 0.00 0.00 0.00 3.16
5808 9922 5.853572 AGTCTAATTTCCCCCAACTACAA 57.146 39.130 0.00 0.00 0.00 2.41
5809 9923 6.027482 ACTAGTCTAATTTCCCCCAACTACA 58.973 40.000 0.00 0.00 0.00 2.74
5810 9924 6.556974 ACTAGTCTAATTTCCCCCAACTAC 57.443 41.667 0.00 0.00 0.00 2.73
5811 9925 7.311486 GGAAACTAGTCTAATTTCCCCCAACTA 60.311 40.741 18.28 0.00 43.75 2.24
5812 9926 6.464530 AAACTAGTCTAATTTCCCCCAACT 57.535 37.500 0.00 0.00 0.00 3.16
5813 9927 5.651139 GGAAACTAGTCTAATTTCCCCCAAC 59.349 44.000 18.28 0.00 43.75 3.77
5814 9928 5.823312 GGAAACTAGTCTAATTTCCCCCAA 58.177 41.667 18.28 0.00 43.75 4.12
5815 9929 5.446260 GGAAACTAGTCTAATTTCCCCCA 57.554 43.478 18.28 0.00 43.75 4.96
5820 9934 9.368674 GTAGTTGGAGGAAACTAGTCTAATTTC 57.631 37.037 5.42 5.42 41.97 2.17
5821 9935 8.877195 TGTAGTTGGAGGAAACTAGTCTAATTT 58.123 33.333 0.00 0.00 41.97 1.82
5822 9936 8.431910 TGTAGTTGGAGGAAACTAGTCTAATT 57.568 34.615 0.00 0.00 41.97 1.40
5823 9937 8.431910 TTGTAGTTGGAGGAAACTAGTCTAAT 57.568 34.615 0.00 0.00 41.97 1.73
5824 9938 7.508296 ACTTGTAGTTGGAGGAAACTAGTCTAA 59.492 37.037 0.00 0.00 41.97 2.10
5825 9939 7.008941 ACTTGTAGTTGGAGGAAACTAGTCTA 58.991 38.462 0.00 0.00 41.97 2.59
5826 9940 5.839606 ACTTGTAGTTGGAGGAAACTAGTCT 59.160 40.000 0.00 0.00 41.97 3.24
5827 9941 6.099159 ACTTGTAGTTGGAGGAAACTAGTC 57.901 41.667 0.00 0.00 41.97 2.59
5828 9942 7.793948 ATACTTGTAGTTGGAGGAAACTAGT 57.206 36.000 0.00 0.00 41.97 2.57
5829 9943 9.503399 AAAATACTTGTAGTTGGAGGAAACTAG 57.497 33.333 0.00 0.00 41.97 2.57
5830 9944 9.280174 CAAAATACTTGTAGTTGGAGGAAACTA 57.720 33.333 0.00 0.00 44.43 2.24
5832 9946 8.161699 TCAAAATACTTGTAGTTGGAGGAAAC 57.838 34.615 0.00 0.00 0.00 2.78
5833 9947 8.934023 ATCAAAATACTTGTAGTTGGAGGAAA 57.066 30.769 4.71 0.00 0.00 3.13
5834 9948 9.444600 GTATCAAAATACTTGTAGTTGGAGGAA 57.555 33.333 4.71 0.00 35.77 3.36
5835 9949 8.598916 TGTATCAAAATACTTGTAGTTGGAGGA 58.401 33.333 4.71 0.00 38.87 3.71
5836 9950 8.786826 TGTATCAAAATACTTGTAGTTGGAGG 57.213 34.615 4.71 0.00 38.87 4.30
5837 9951 9.436957 ACTGTATCAAAATACTTGTAGTTGGAG 57.563 33.333 4.71 0.00 38.87 3.86
5838 9952 9.214957 CACTGTATCAAAATACTTGTAGTTGGA 57.785 33.333 1.33 1.33 38.87 3.53
5839 9953 8.450964 CCACTGTATCAAAATACTTGTAGTTGG 58.549 37.037 0.00 0.00 38.87 3.77
5840 9954 8.450964 CCCACTGTATCAAAATACTTGTAGTTG 58.549 37.037 0.00 0.00 38.87 3.16
5841 9955 8.380099 TCCCACTGTATCAAAATACTTGTAGTT 58.620 33.333 0.00 0.00 38.87 2.24
5842 9956 7.913789 TCCCACTGTATCAAAATACTTGTAGT 58.086 34.615 0.00 0.00 38.87 2.73
5843 9957 8.041323 ACTCCCACTGTATCAAAATACTTGTAG 58.959 37.037 0.00 0.00 38.87 2.74
5844 9958 7.913789 ACTCCCACTGTATCAAAATACTTGTA 58.086 34.615 0.00 0.00 38.87 2.41
5845 9959 6.779860 ACTCCCACTGTATCAAAATACTTGT 58.220 36.000 0.00 0.00 38.87 3.16
5846 9960 7.495934 CCTACTCCCACTGTATCAAAATACTTG 59.504 40.741 0.00 0.00 38.87 3.16
5847 9961 7.182206 ACCTACTCCCACTGTATCAAAATACTT 59.818 37.037 0.00 0.00 38.87 2.24
5848 9962 6.672657 ACCTACTCCCACTGTATCAAAATACT 59.327 38.462 0.00 0.00 38.87 2.12
5849 9963 6.885922 ACCTACTCCCACTGTATCAAAATAC 58.114 40.000 0.00 0.00 38.61 1.89
5850 9964 6.670464 TGACCTACTCCCACTGTATCAAAATA 59.330 38.462 0.00 0.00 0.00 1.40
5851 9965 5.487488 TGACCTACTCCCACTGTATCAAAAT 59.513 40.000 0.00 0.00 0.00 1.82
5852 9966 4.841813 TGACCTACTCCCACTGTATCAAAA 59.158 41.667 0.00 0.00 0.00 2.44
5853 9967 4.422057 TGACCTACTCCCACTGTATCAAA 58.578 43.478 0.00 0.00 0.00 2.69
5854 9968 4.055710 TGACCTACTCCCACTGTATCAA 57.944 45.455 0.00 0.00 0.00 2.57
5855 9969 3.750501 TGACCTACTCCCACTGTATCA 57.249 47.619 0.00 0.00 0.00 2.15
5856 9970 6.010850 TCATATGACCTACTCCCACTGTATC 58.989 44.000 0.00 0.00 0.00 2.24
5857 9971 5.965486 TCATATGACCTACTCCCACTGTAT 58.035 41.667 0.00 0.00 0.00 2.29
5858 9972 5.397553 TCATATGACCTACTCCCACTGTA 57.602 43.478 0.00 0.00 0.00 2.74
5859 9973 4.265856 TCATATGACCTACTCCCACTGT 57.734 45.455 0.00 0.00 0.00 3.55
5860 9974 5.541868 AGAATCATATGACCTACTCCCACTG 59.458 44.000 7.78 0.00 0.00 3.66
5861 9975 5.541868 CAGAATCATATGACCTACTCCCACT 59.458 44.000 7.78 0.00 0.00 4.00
5862 9976 5.305644 ACAGAATCATATGACCTACTCCCAC 59.694 44.000 7.78 0.00 0.00 4.61
5863 9977 5.467738 ACAGAATCATATGACCTACTCCCA 58.532 41.667 7.78 0.00 0.00 4.37
5864 9978 6.426646 AACAGAATCATATGACCTACTCCC 57.573 41.667 7.78 0.00 0.00 4.30
5865 9979 7.275920 ACAAACAGAATCATATGACCTACTCC 58.724 38.462 7.78 0.00 0.00 3.85
5866 9980 9.250624 GTACAAACAGAATCATATGACCTACTC 57.749 37.037 7.78 0.50 0.00 2.59
5867 9981 7.921214 CGTACAAACAGAATCATATGACCTACT 59.079 37.037 7.78 2.56 0.00 2.57
5868 9982 7.306632 GCGTACAAACAGAATCATATGACCTAC 60.307 40.741 7.78 2.20 0.00 3.18
5869 9983 6.700081 GCGTACAAACAGAATCATATGACCTA 59.300 38.462 7.78 0.00 0.00 3.08
5870 9984 5.523916 GCGTACAAACAGAATCATATGACCT 59.476 40.000 7.78 5.61 0.00 3.85
5976 10254 7.259161 CCAGTCTAATACCTCAGTTGTAGAAC 58.741 42.308 0.00 0.00 0.00 3.01
6108 10386 8.299570 ACAATTAATCACCTGAGTTGAATGAAC 58.700 33.333 0.00 0.00 34.40 3.18
6141 10419 2.412847 GCATACTTTCCAACTGTGCGTC 60.413 50.000 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.