Multiple sequence alignment - TraesCS7B01G254900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G254900 chr7B 100.000 3816 0 0 1 3816 470838054 470834239 0.000000e+00 7047.0
1 TraesCS7B01G254900 chr7B 94.320 757 43 0 3060 3816 324399189 324398433 0.000000e+00 1160.0
2 TraesCS7B01G254900 chr7B 89.960 757 75 1 3060 3816 579678598 579679353 0.000000e+00 976.0
3 TraesCS7B01G254900 chr7B 91.864 295 23 1 2767 3060 324399526 324399232 9.870000e-111 411.0
4 TraesCS7B01G254900 chr7B 88.176 296 33 2 2767 3060 579678260 579678555 6.070000e-93 351.0
5 TraesCS7B01G254900 chr7B 91.981 212 15 2 2767 2977 440181998 440181788 2.880000e-76 296.0
6 TraesCS7B01G254900 chr7D 93.690 1870 72 23 780 2644 451188091 451186263 0.000000e+00 2758.0
7 TraesCS7B01G254900 chr7D 89.409 812 47 18 1 781 451188933 451188130 0.000000e+00 987.0
8 TraesCS7B01G254900 chr7A 93.657 1687 81 16 906 2566 545934169 545935855 0.000000e+00 2499.0
9 TraesCS7B01G254900 chr7A 78.873 426 41 27 168 572 545933515 545933912 3.810000e-60 243.0
10 TraesCS7B01G254900 chr7A 95.349 43 2 0 46 88 545933198 545933240 6.840000e-08 69.4
11 TraesCS7B01G254900 chr6A 82.788 1528 250 10 1037 2555 199015646 199014123 0.000000e+00 1352.0
12 TraesCS7B01G254900 chr6A 88.415 751 86 1 3066 3816 176291499 176290750 0.000000e+00 904.0
13 TraesCS7B01G254900 chr6D 82.714 1533 248 14 1034 2555 148482276 148483802 0.000000e+00 1347.0
14 TraesCS7B01G254900 chr6D 94.141 751 42 2 3067 3816 349735069 349735818 0.000000e+00 1142.0
15 TraesCS7B01G254900 chr6D 92.759 290 21 0 2768 3057 349734727 349735016 1.640000e-113 420.0
16 TraesCS7B01G254900 chr6B 82.691 1531 252 10 1034 2555 261452671 261454197 0.000000e+00 1347.0
17 TraesCS7B01G254900 chr6B 79.554 269 41 12 2768 3033 430522256 430522513 3.030000e-41 180.0
18 TraesCS7B01G254900 chr6B 97.436 39 1 0 2729 2767 316056905 316056943 2.460000e-07 67.6
19 TraesCS7B01G254900 chr1A 83.166 1396 214 18 1090 2473 573242470 573243856 0.000000e+00 1256.0
20 TraesCS7B01G254900 chr1D 82.353 1462 226 24 1090 2529 477189078 477190529 0.000000e+00 1242.0
21 TraesCS7B01G254900 chr1D 78.944 1458 253 47 1035 2468 474375112 474376539 0.000000e+00 942.0
22 TraesCS7B01G254900 chr1B 82.455 1385 218 23 1090 2460 664776694 664778067 0.000000e+00 1188.0
23 TraesCS7B01G254900 chr1B 89.696 757 78 0 3060 3816 288039159 288038403 0.000000e+00 966.0
24 TraesCS7B01G254900 chr1B 88.926 298 32 1 2763 3060 288039498 288039202 2.170000e-97 366.0
25 TraesCS7B01G254900 chr1B 97.500 40 1 0 2728 2767 18678263 18678302 6.840000e-08 69.4
26 TraesCS7B01G254900 chr2D 93.008 758 51 2 3060 3816 145725320 145726076 0.000000e+00 1105.0
27 TraesCS7B01G254900 chr2D 91.186 295 25 1 2767 3060 145724983 145725277 2.140000e-107 399.0
28 TraesCS7B01G254900 chr2D 82.993 294 50 0 2767 3060 277601034 277601327 2.260000e-67 267.0
29 TraesCS7B01G254900 chr2D 81.973 294 51 2 2768 3060 277528196 277528488 8.190000e-62 248.0
30 TraesCS7B01G254900 chr5B 88.127 758 88 2 3060 3816 390400911 390400155 0.000000e+00 900.0
31 TraesCS7B01G254900 chr5B 88.127 758 88 2 3060 3816 390521776 390521020 0.000000e+00 900.0
32 TraesCS7B01G254900 chr4D 72.110 692 150 34 1090 1761 405028030 405028698 6.560000e-38 169.0
33 TraesCS7B01G254900 chr4A 71.512 688 161 29 1090 1761 62537959 62538627 6.600000e-33 152.0
34 TraesCS7B01G254900 chr3B 97.619 42 1 0 2726 2767 84446871 84446912 5.290000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G254900 chr7B 470834239 470838054 3815 True 7047.000000 7047 100.0000 1 3816 1 chr7B.!!$R2 3815
1 TraesCS7B01G254900 chr7B 324398433 324399526 1093 True 785.500000 1160 93.0920 2767 3816 2 chr7B.!!$R3 1049
2 TraesCS7B01G254900 chr7B 579678260 579679353 1093 False 663.500000 976 89.0680 2767 3816 2 chr7B.!!$F1 1049
3 TraesCS7B01G254900 chr7D 451186263 451188933 2670 True 1872.500000 2758 91.5495 1 2644 2 chr7D.!!$R1 2643
4 TraesCS7B01G254900 chr7A 545933198 545935855 2657 False 937.133333 2499 89.2930 46 2566 3 chr7A.!!$F1 2520
5 TraesCS7B01G254900 chr6A 199014123 199015646 1523 True 1352.000000 1352 82.7880 1037 2555 1 chr6A.!!$R2 1518
6 TraesCS7B01G254900 chr6A 176290750 176291499 749 True 904.000000 904 88.4150 3066 3816 1 chr6A.!!$R1 750
7 TraesCS7B01G254900 chr6D 148482276 148483802 1526 False 1347.000000 1347 82.7140 1034 2555 1 chr6D.!!$F1 1521
8 TraesCS7B01G254900 chr6D 349734727 349735818 1091 False 781.000000 1142 93.4500 2768 3816 2 chr6D.!!$F2 1048
9 TraesCS7B01G254900 chr6B 261452671 261454197 1526 False 1347.000000 1347 82.6910 1034 2555 1 chr6B.!!$F1 1521
10 TraesCS7B01G254900 chr1A 573242470 573243856 1386 False 1256.000000 1256 83.1660 1090 2473 1 chr1A.!!$F1 1383
11 TraesCS7B01G254900 chr1D 477189078 477190529 1451 False 1242.000000 1242 82.3530 1090 2529 1 chr1D.!!$F2 1439
12 TraesCS7B01G254900 chr1D 474375112 474376539 1427 False 942.000000 942 78.9440 1035 2468 1 chr1D.!!$F1 1433
13 TraesCS7B01G254900 chr1B 664776694 664778067 1373 False 1188.000000 1188 82.4550 1090 2460 1 chr1B.!!$F2 1370
14 TraesCS7B01G254900 chr1B 288038403 288039498 1095 True 666.000000 966 89.3110 2763 3816 2 chr1B.!!$R1 1053
15 TraesCS7B01G254900 chr2D 145724983 145726076 1093 False 752.000000 1105 92.0970 2767 3816 2 chr2D.!!$F3 1049
16 TraesCS7B01G254900 chr5B 390400155 390400911 756 True 900.000000 900 88.1270 3060 3816 1 chr5B.!!$R1 756
17 TraesCS7B01G254900 chr5B 390521020 390521776 756 True 900.000000 900 88.1270 3060 3816 1 chr5B.!!$R2 756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
811 1124 0.030101 GTTGCTCGATCTCGGAGGAG 59.970 60.0 4.96 5.38 41.89 3.69 F
2599 2955 0.112995 TCCAAGCTGGCAACCTTGAT 59.887 50.0 22.12 0.00 40.59 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2730 3086 0.031721 GTATTACCGGACGCAGGGAG 59.968 60.000 9.46 0.0 0.0 4.3 R
3422 3823 1.980765 TGGACTTGCTCATCTTCTGGT 59.019 47.619 0.00 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.750229 AGTGCATTTTTCATCTAGAAACTGA 57.250 32.000 0.00 0.00 45.48 3.41
101 102 2.746277 GACCGTTCGCCAGGCAAT 60.746 61.111 13.30 0.00 0.00 3.56
103 104 1.003112 ACCGTTCGCCAGGCAATAA 60.003 52.632 13.30 0.00 0.00 1.40
104 105 1.303091 ACCGTTCGCCAGGCAATAAC 61.303 55.000 13.30 11.36 0.00 1.89
107 108 1.268032 CGTTCGCCAGGCAATAACATC 60.268 52.381 13.30 0.00 0.00 3.06
131 132 7.833786 TCACCGTAAAAGAAGCTCTAGAAATA 58.166 34.615 0.00 0.00 0.00 1.40
193 409 1.065551 GCAGTGTCAAAGTCCAACACC 59.934 52.381 1.52 0.00 43.35 4.16
229 450 2.434702 GGGAGGACGTCATGGATACTTT 59.565 50.000 18.91 0.00 37.61 2.66
284 507 0.037232 GGACTCGGAGGTTGGAACTG 60.037 60.000 10.23 0.00 0.00 3.16
287 510 0.969894 CTCGGAGGTTGGAACTGACT 59.030 55.000 0.00 0.00 0.00 3.41
387 614 1.674221 CCGTTTTCTCCTCTGCCTCTG 60.674 57.143 0.00 0.00 0.00 3.35
531 772 2.776913 CGTCTTCCGCTCCTCCTCC 61.777 68.421 0.00 0.00 0.00 4.30
534 775 2.440430 TTCCGCTCCTCCTCCTCG 60.440 66.667 0.00 0.00 0.00 4.63
693 968 4.742201 CGGACCGGAGTGGCTGTG 62.742 72.222 9.46 0.00 43.94 3.66
715 990 1.598130 GTGCGGCTGTTCTTGGTCT 60.598 57.895 0.00 0.00 0.00 3.85
717 992 2.383527 GCGGCTGTTCTTGGTCTCG 61.384 63.158 0.00 0.00 0.00 4.04
761 1038 0.320374 TCTCGGTGGTCGCTGAATTT 59.680 50.000 0.00 0.00 39.05 1.82
764 1041 0.165944 CGGTGGTCGCTGAATTTGTC 59.834 55.000 0.00 0.00 0.00 3.18
783 1060 1.770110 TTCCCCTGAGCTGGTGTGT 60.770 57.895 0.00 0.00 0.00 3.72
786 1063 1.451504 CCCTGAGCTGGTGTGTTCA 59.548 57.895 0.00 0.00 0.00 3.18
787 1064 0.604780 CCCTGAGCTGGTGTGTTCAG 60.605 60.000 0.00 0.00 42.41 3.02
789 1066 1.506493 CTGAGCTGGTGTGTTCAGTC 58.494 55.000 0.00 0.00 39.42 3.51
791 1068 0.394565 GAGCTGGTGTGTTCAGTCCT 59.605 55.000 0.00 0.00 34.89 3.85
792 1069 0.107456 AGCTGGTGTGTTCAGTCCTG 59.893 55.000 0.00 0.00 34.89 3.86
793 1070 0.179045 GCTGGTGTGTTCAGTCCTGT 60.179 55.000 0.00 0.00 34.89 4.00
795 1072 1.942657 CTGGTGTGTTCAGTCCTGTTG 59.057 52.381 0.00 0.00 0.00 3.33
797 1074 1.668419 GTGTGTTCAGTCCTGTTGCT 58.332 50.000 0.00 0.00 0.00 3.91
799 1076 0.861837 GTGTTCAGTCCTGTTGCTCG 59.138 55.000 0.00 0.00 0.00 5.03
811 1124 0.030101 GTTGCTCGATCTCGGAGGAG 59.970 60.000 4.96 5.38 41.89 3.69
812 1125 1.103987 TTGCTCGATCTCGGAGGAGG 61.104 60.000 4.96 0.00 40.85 4.30
825 1138 3.067833 CGGAGGAGGACTGTTTTTCTTC 58.932 50.000 0.00 0.00 0.00 2.87
831 1144 4.998033 GGAGGACTGTTTTTCTTCCAGTAG 59.002 45.833 0.00 0.00 39.43 2.57
908 1225 3.198409 ACGCCATAGATTTGCATCTCA 57.802 42.857 0.00 0.00 40.53 3.27
924 1241 1.628846 TCTCAGCTCCTAAACCCAACC 59.371 52.381 0.00 0.00 0.00 3.77
935 1252 0.537371 AACCCAACCACTGTAGCAGC 60.537 55.000 0.00 0.00 34.37 5.25
1458 1805 2.103143 CGCAAGATCCTCGAGCGT 59.897 61.111 6.99 0.00 38.82 5.07
1482 1829 2.435693 GCTGGGCGAGGACACCTAT 61.436 63.158 0.00 0.00 31.76 2.57
1701 2048 1.304713 CAGGCTGAGGGGCAACATT 60.305 57.895 9.42 0.00 43.56 2.71
1803 2150 2.126580 AACTCGTACGCGCTGGTC 60.127 61.111 11.24 0.00 38.14 4.02
2568 2924 2.892425 GTTGGGAGCGCCTGATCG 60.892 66.667 2.29 0.00 0.00 3.69
2569 2925 3.074369 TTGGGAGCGCCTGATCGA 61.074 61.111 2.29 0.00 0.00 3.59
2570 2926 3.371097 TTGGGAGCGCCTGATCGAC 62.371 63.158 2.29 0.00 0.00 4.20
2571 2927 3.532155 GGGAGCGCCTGATCGACT 61.532 66.667 2.29 0.00 0.00 4.18
2572 2928 2.279120 GGAGCGCCTGATCGACTG 60.279 66.667 2.29 0.00 0.00 3.51
2573 2929 2.959071 GAGCGCCTGATCGACTGC 60.959 66.667 2.29 0.00 0.00 4.40
2574 2930 3.423162 GAGCGCCTGATCGACTGCT 62.423 63.158 2.29 2.45 34.96 4.24
2575 2931 3.260483 GCGCCTGATCGACTGCTG 61.260 66.667 0.00 0.00 0.00 4.41
2576 2932 3.260483 CGCCTGATCGACTGCTGC 61.260 66.667 0.00 0.00 0.00 5.25
2577 2933 2.186384 GCCTGATCGACTGCTGCT 59.814 61.111 0.00 0.00 0.00 4.24
2578 2934 1.882167 GCCTGATCGACTGCTGCTC 60.882 63.158 0.00 0.00 0.00 4.26
2583 2939 2.271607 GATCGACTGCTGCTCGTCCA 62.272 60.000 10.47 2.56 32.77 4.02
2584 2940 1.877576 ATCGACTGCTGCTCGTCCAA 61.878 55.000 10.47 3.90 32.77 3.53
2597 2953 1.662044 GTCCAAGCTGGCAACCTTG 59.338 57.895 16.46 16.46 37.47 3.61
2599 2955 0.112995 TCCAAGCTGGCAACCTTGAT 59.887 50.000 22.12 0.00 40.59 2.57
2600 2956 0.971386 CCAAGCTGGCAACCTTGATT 59.029 50.000 22.12 0.00 40.59 2.57
2601 2957 1.337447 CCAAGCTGGCAACCTTGATTG 60.337 52.381 22.12 10.79 40.59 2.67
2602 2958 1.614903 CAAGCTGGCAACCTTGATTGA 59.385 47.619 17.84 0.00 40.59 2.57
2603 2959 2.226962 AGCTGGCAACCTTGATTGAT 57.773 45.000 0.00 0.00 0.00 2.57
2604 2960 2.532843 AGCTGGCAACCTTGATTGATT 58.467 42.857 0.00 0.00 0.00 2.57
2605 2961 2.494870 AGCTGGCAACCTTGATTGATTC 59.505 45.455 0.00 0.00 0.00 2.52
2606 2962 2.231964 GCTGGCAACCTTGATTGATTCA 59.768 45.455 0.00 0.00 0.00 2.57
2607 2963 3.118884 GCTGGCAACCTTGATTGATTCAT 60.119 43.478 0.00 0.00 33.34 2.57
2621 2977 7.853299 TGATTGATTCATTTGATTGGGTGATT 58.147 30.769 0.00 0.00 0.00 2.57
2652 3008 6.840780 CCATCTCCTGGTTCATTTTTAACT 57.159 37.500 0.00 0.00 40.49 2.24
2653 3009 7.232118 CCATCTCCTGGTTCATTTTTAACTT 57.768 36.000 0.00 0.00 40.49 2.66
2654 3010 7.670364 CCATCTCCTGGTTCATTTTTAACTTT 58.330 34.615 0.00 0.00 40.49 2.66
2655 3011 8.150296 CCATCTCCTGGTTCATTTTTAACTTTT 58.850 33.333 0.00 0.00 40.49 2.27
2656 3012 9.546428 CATCTCCTGGTTCATTTTTAACTTTTT 57.454 29.630 0.00 0.00 0.00 1.94
2681 3037 5.964958 GAAACAATCTCCTGGTTCAATCA 57.035 39.130 0.00 0.00 41.76 2.57
2682 3038 6.331369 GAAACAATCTCCTGGTTCAATCAA 57.669 37.500 0.00 0.00 41.76 2.57
2683 3039 6.923199 AAACAATCTCCTGGTTCAATCAAT 57.077 33.333 0.00 0.00 0.00 2.57
2684 3040 6.521151 AACAATCTCCTGGTTCAATCAATC 57.479 37.500 0.00 0.00 0.00 2.67
2685 3041 4.952335 ACAATCTCCTGGTTCAATCAATCC 59.048 41.667 0.00 0.00 0.00 3.01
2686 3042 5.198965 CAATCTCCTGGTTCAATCAATCCT 58.801 41.667 0.00 0.00 0.00 3.24
2687 3043 4.934797 TCTCCTGGTTCAATCAATCCTT 57.065 40.909 0.00 0.00 0.00 3.36
2688 3044 4.592942 TCTCCTGGTTCAATCAATCCTTG 58.407 43.478 0.00 0.00 0.00 3.61
2689 3045 4.289410 TCTCCTGGTTCAATCAATCCTTGA 59.711 41.667 0.00 0.00 45.01 3.02
2690 3046 4.592942 TCCTGGTTCAATCAATCCTTGAG 58.407 43.478 0.00 0.00 43.98 3.02
2691 3047 4.289410 TCCTGGTTCAATCAATCCTTGAGA 59.711 41.667 0.00 0.00 43.98 3.27
2692 3048 5.012239 CCTGGTTCAATCAATCCTTGAGAA 58.988 41.667 0.00 0.00 43.98 2.87
2693 3049 5.105997 CCTGGTTCAATCAATCCTTGAGAAC 60.106 44.000 10.94 10.94 43.98 3.01
2694 3050 5.384336 TGGTTCAATCAATCCTTGAGAACA 58.616 37.500 16.91 6.94 42.22 3.18
2695 3051 6.012113 TGGTTCAATCAATCCTTGAGAACAT 58.988 36.000 16.91 0.00 42.22 2.71
2696 3052 6.071784 TGGTTCAATCAATCCTTGAGAACATG 60.072 38.462 16.91 0.00 42.22 3.21
2697 3053 5.571784 TCAATCAATCCTTGAGAACATGC 57.428 39.130 0.00 0.00 43.98 4.06
2698 3054 5.011586 TCAATCAATCCTTGAGAACATGCA 58.988 37.500 0.00 0.00 43.98 3.96
2699 3055 5.655090 TCAATCAATCCTTGAGAACATGCAT 59.345 36.000 0.00 0.00 43.98 3.96
2700 3056 4.976224 TCAATCCTTGAGAACATGCATG 57.024 40.909 25.09 25.09 34.08 4.06
2701 3057 3.129813 TCAATCCTTGAGAACATGCATGC 59.870 43.478 26.53 11.82 34.08 4.06
2702 3058 2.203470 TCCTTGAGAACATGCATGCA 57.797 45.000 26.53 25.04 0.00 3.96
2703 3059 2.730382 TCCTTGAGAACATGCATGCAT 58.270 42.857 27.46 27.46 37.08 3.96
2704 3060 8.559576 TCAATCCTTGAGAACATGCATGCATG 62.560 42.308 44.22 44.22 45.38 4.06
2712 3068 3.698250 ATGCATGCATGATTTGGGC 57.302 47.368 31.74 13.27 35.03 5.36
2713 3069 1.128200 ATGCATGCATGATTTGGGCT 58.872 45.000 31.74 4.69 35.03 5.19
2714 3070 0.176910 TGCATGCATGATTTGGGCTG 59.823 50.000 30.64 1.04 0.00 4.85
2715 3071 0.177141 GCATGCATGATTTGGGCTGT 59.823 50.000 30.64 0.00 0.00 4.40
2716 3072 1.406341 GCATGCATGATTTGGGCTGTT 60.406 47.619 30.64 0.00 0.00 3.16
2717 3073 2.276201 CATGCATGATTTGGGCTGTTG 58.724 47.619 22.59 0.00 0.00 3.33
2718 3074 1.340088 TGCATGATTTGGGCTGTTGT 58.660 45.000 0.00 0.00 0.00 3.32
2719 3075 1.693062 TGCATGATTTGGGCTGTTGTT 59.307 42.857 0.00 0.00 0.00 2.83
2720 3076 2.104451 TGCATGATTTGGGCTGTTGTTT 59.896 40.909 0.00 0.00 0.00 2.83
2721 3077 3.140623 GCATGATTTGGGCTGTTGTTTT 58.859 40.909 0.00 0.00 0.00 2.43
2722 3078 4.202295 TGCATGATTTGGGCTGTTGTTTTA 60.202 37.500 0.00 0.00 0.00 1.52
2723 3079 4.389687 GCATGATTTGGGCTGTTGTTTTAG 59.610 41.667 0.00 0.00 0.00 1.85
2724 3080 4.599047 TGATTTGGGCTGTTGTTTTAGG 57.401 40.909 0.00 0.00 0.00 2.69
2725 3081 3.964031 TGATTTGGGCTGTTGTTTTAGGT 59.036 39.130 0.00 0.00 0.00 3.08
2726 3082 4.407296 TGATTTGGGCTGTTGTTTTAGGTT 59.593 37.500 0.00 0.00 0.00 3.50
2727 3083 3.810310 TTGGGCTGTTGTTTTAGGTTG 57.190 42.857 0.00 0.00 0.00 3.77
2728 3084 2.741145 TGGGCTGTTGTTTTAGGTTGT 58.259 42.857 0.00 0.00 0.00 3.32
2729 3085 3.899726 TGGGCTGTTGTTTTAGGTTGTA 58.100 40.909 0.00 0.00 0.00 2.41
2730 3086 3.633065 TGGGCTGTTGTTTTAGGTTGTAC 59.367 43.478 0.00 0.00 0.00 2.90
2731 3087 3.887110 GGGCTGTTGTTTTAGGTTGTACT 59.113 43.478 0.00 0.00 0.00 2.73
2732 3088 4.023450 GGGCTGTTGTTTTAGGTTGTACTC 60.023 45.833 0.00 0.00 0.00 2.59
2733 3089 4.023450 GGCTGTTGTTTTAGGTTGTACTCC 60.023 45.833 0.00 0.00 0.00 3.85
2734 3090 4.023450 GCTGTTGTTTTAGGTTGTACTCCC 60.023 45.833 0.00 0.00 0.00 4.30
2735 3091 5.374071 CTGTTGTTTTAGGTTGTACTCCCT 58.626 41.667 8.63 8.63 34.74 4.20
2736 3092 5.127491 TGTTGTTTTAGGTTGTACTCCCTG 58.873 41.667 12.51 0.00 32.08 4.45
2737 3093 3.746940 TGTTTTAGGTTGTACTCCCTGC 58.253 45.455 12.51 3.53 32.08 4.85
2738 3094 2.740447 GTTTTAGGTTGTACTCCCTGCG 59.260 50.000 12.51 0.00 32.08 5.18
2739 3095 1.636148 TTAGGTTGTACTCCCTGCGT 58.364 50.000 12.51 0.00 32.08 5.24
2740 3096 1.180029 TAGGTTGTACTCCCTGCGTC 58.820 55.000 12.51 0.00 32.08 5.19
2741 3097 1.079336 GGTTGTACTCCCTGCGTCC 60.079 63.158 0.00 0.00 0.00 4.79
2742 3098 1.445582 GTTGTACTCCCTGCGTCCG 60.446 63.158 0.00 0.00 0.00 4.79
2743 3099 2.642254 TTGTACTCCCTGCGTCCGG 61.642 63.158 0.00 0.00 0.00 5.14
2744 3100 3.066814 GTACTCCCTGCGTCCGGT 61.067 66.667 0.00 0.00 0.00 5.28
2745 3101 1.750399 GTACTCCCTGCGTCCGGTA 60.750 63.158 0.00 0.00 0.00 4.02
2746 3102 1.001020 TACTCCCTGCGTCCGGTAA 60.001 57.895 0.00 0.00 0.00 2.85
2747 3103 0.396139 TACTCCCTGCGTCCGGTAAT 60.396 55.000 0.00 0.00 0.00 1.89
2748 3104 0.396139 ACTCCCTGCGTCCGGTAATA 60.396 55.000 0.00 0.00 0.00 0.98
2749 3105 0.031721 CTCCCTGCGTCCGGTAATAC 59.968 60.000 0.00 0.00 0.00 1.89
2750 3106 0.396139 TCCCTGCGTCCGGTAATACT 60.396 55.000 0.00 0.00 0.00 2.12
2751 3107 0.462789 CCCTGCGTCCGGTAATACTT 59.537 55.000 0.00 0.00 0.00 2.24
2752 3108 1.567504 CCTGCGTCCGGTAATACTTG 58.432 55.000 0.00 0.00 0.00 3.16
2753 3109 1.134907 CCTGCGTCCGGTAATACTTGT 60.135 52.381 0.00 0.00 0.00 3.16
2754 3110 2.190981 CTGCGTCCGGTAATACTTGTC 58.809 52.381 0.00 0.00 0.00 3.18
2755 3111 1.545136 TGCGTCCGGTAATACTTGTCA 59.455 47.619 0.00 0.00 0.00 3.58
2756 3112 2.166870 TGCGTCCGGTAATACTTGTCAT 59.833 45.455 0.00 0.00 0.00 3.06
2757 3113 2.793232 GCGTCCGGTAATACTTGTCATC 59.207 50.000 0.00 0.00 0.00 2.92
2758 3114 3.735820 GCGTCCGGTAATACTTGTCATCA 60.736 47.826 0.00 0.00 0.00 3.07
2759 3115 4.426416 CGTCCGGTAATACTTGTCATCAA 58.574 43.478 0.00 0.00 0.00 2.57
2760 3116 4.865925 CGTCCGGTAATACTTGTCATCAAA 59.134 41.667 0.00 0.00 32.87 2.69
2761 3117 5.349270 CGTCCGGTAATACTTGTCATCAAAA 59.651 40.000 0.00 0.00 32.87 2.44
2762 3118 6.036735 CGTCCGGTAATACTTGTCATCAAAAT 59.963 38.462 0.00 0.00 32.87 1.82
2763 3119 7.186804 GTCCGGTAATACTTGTCATCAAAATG 58.813 38.462 0.00 0.00 32.87 2.32
2764 3120 6.317642 TCCGGTAATACTTGTCATCAAAATGG 59.682 38.462 0.00 0.00 33.42 3.16
2765 3121 6.317642 CCGGTAATACTTGTCATCAAAATGGA 59.682 38.462 0.00 0.00 33.42 3.41
2857 3213 1.199789 TGTGGCTCAAATGCGAACATC 59.800 47.619 0.00 0.00 34.62 3.06
2865 3223 1.031571 AATGCGAACATCCGGCACAT 61.032 50.000 0.00 0.00 39.84 3.21
2867 3225 0.179059 TGCGAACATCCGGCACATAT 60.179 50.000 0.00 0.00 0.00 1.78
2919 3277 7.782644 AGACTACATCTAAGCTAACTCCTCATT 59.217 37.037 0.00 0.00 35.15 2.57
2975 3333 1.151899 ACCACCCAGCTACCTCCAA 60.152 57.895 0.00 0.00 0.00 3.53
3002 3360 4.634883 CGTACTAGTAACAAGCTCCAGAGA 59.365 45.833 3.61 0.00 0.00 3.10
3039 3397 1.903183 ACCCTACTGAAGACTCTTGCC 59.097 52.381 0.00 0.00 0.00 4.52
3062 3463 0.947244 CTCTGTTTCCACAAAGCGCT 59.053 50.000 2.64 2.64 30.36 5.92
3129 3530 4.082026 TCTCATTTGCGAGTGATTGAGAGA 60.082 41.667 0.00 0.00 35.82 3.10
3201 3602 2.615912 GGGCACTGCAGAAGAATATGAC 59.384 50.000 23.35 8.26 0.00 3.06
3253 3654 1.343789 GCATGCTGAGCTCTCATCCTA 59.656 52.381 16.19 0.00 39.13 2.94
3263 3664 2.158696 GCTCTCATCCTAAAGCCCATGT 60.159 50.000 0.00 0.00 0.00 3.21
3341 3742 1.382629 GCACTTAAGAGGGGCCCAA 59.617 57.895 27.72 9.35 0.00 4.12
3364 3765 2.665165 TCTCCAAACACACTTTGCCAT 58.335 42.857 0.00 0.00 0.00 4.40
3422 3823 3.834813 AGACTGACTTGGCTGAGTATTGA 59.165 43.478 0.00 0.00 0.00 2.57
3494 3895 3.825160 AACTGTCGCCACCGCATGT 62.825 57.895 0.00 0.00 34.03 3.21
3578 3979 0.394216 TGTTGTTGAGCAGTGCCTGT 60.394 50.000 12.58 0.00 33.43 4.00
3675 4076 1.705873 GTGTATCCACCGATCCCTCT 58.294 55.000 0.00 0.00 35.44 3.69
3732 4133 5.722021 ATGAACCAAACTATCAAACACCC 57.278 39.130 0.00 0.00 0.00 4.61
3764 4165 7.148507 GCCAATCTATCTTCGATCATTGGTAAG 60.149 40.741 18.95 0.82 41.56 2.34
3773 4174 0.323360 TCATTGGTAAGCCCTGCCAC 60.323 55.000 0.00 0.00 31.19 5.01
3808 4209 2.487265 CCATACGCTTTAGCCATTCCCT 60.487 50.000 0.00 0.00 37.91 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 5.250200 TCTTTTACGGTGATGTTATTGCCT 58.750 37.500 0.00 0.00 0.00 4.75
98 99 6.842163 AGCTTCTTTTACGGTGATGTTATTG 58.158 36.000 0.00 0.00 0.00 1.90
101 102 5.790593 AGAGCTTCTTTTACGGTGATGTTA 58.209 37.500 0.00 0.00 0.00 2.41
103 104 4.273148 AGAGCTTCTTTTACGGTGATGT 57.727 40.909 0.00 0.00 0.00 3.06
104 105 5.651530 TCTAGAGCTTCTTTTACGGTGATG 58.348 41.667 0.00 0.00 0.00 3.07
107 108 6.969828 ATTTCTAGAGCTTCTTTTACGGTG 57.030 37.500 0.00 0.00 0.00 4.94
150 157 5.689961 GCAATATTTGACCGTCAACTGTTTT 59.310 36.000 13.61 2.82 35.89 2.43
151 158 5.219633 GCAATATTTGACCGTCAACTGTTT 58.780 37.500 13.61 4.99 35.89 2.83
193 409 0.736053 CTCCCTCCTCTCGACTTTCG 59.264 60.000 0.00 0.00 42.10 3.46
229 450 1.003355 CTTCGCCTGGCTTTCCTCA 60.003 57.895 17.92 0.00 0.00 3.86
284 507 7.486232 CCTTTTCTTCTCTGTTTTGTTTCAGTC 59.514 37.037 0.00 0.00 33.89 3.51
287 510 6.099341 GCCTTTTCTTCTCTGTTTTGTTTCA 58.901 36.000 0.00 0.00 0.00 2.69
387 614 3.967987 TGTCTTTAATAGGGGAGAGAGGC 59.032 47.826 0.00 0.00 0.00 4.70
475 716 2.833582 CCGCCCCGCTTCTCTCTA 60.834 66.667 0.00 0.00 0.00 2.43
503 744 3.593318 GGAAGACGACTCGAGCCT 58.407 61.111 13.61 1.71 0.00 4.58
582 823 0.035439 CTCCGTACCCAGGCAACAAT 60.035 55.000 0.00 0.00 41.41 2.71
585 826 2.436115 GCTCCGTACCCAGGCAAC 60.436 66.667 0.00 0.00 0.00 4.17
676 951 4.742201 CACAGCCACTCCGGTCCG 62.742 72.222 3.60 3.60 36.97 4.79
677 952 4.394712 CCACAGCCACTCCGGTCC 62.395 72.222 0.00 0.00 36.97 4.46
678 953 3.591254 GACCACAGCCACTCCGGTC 62.591 68.421 0.00 0.00 39.42 4.79
679 954 3.626924 GACCACAGCCACTCCGGT 61.627 66.667 0.00 0.00 36.97 5.28
693 968 2.665185 AAGAACAGCCGCACGACC 60.665 61.111 0.00 0.00 0.00 4.79
715 990 2.267642 CCGCCACAGAATTCCCGA 59.732 61.111 0.65 0.00 0.00 5.14
717 992 0.744771 GAGACCGCCACAGAATTCCC 60.745 60.000 0.65 0.00 0.00 3.97
761 1038 1.152030 ACCAGCTCAGGGGAAGACA 60.152 57.895 0.00 0.00 0.00 3.41
764 1041 1.002868 CACACCAGCTCAGGGGAAG 60.003 63.158 0.00 0.00 34.94 3.46
783 1060 1.895798 AGATCGAGCAACAGGACTGAA 59.104 47.619 2.38 0.00 0.00 3.02
786 1063 0.453793 CGAGATCGAGCAACAGGACT 59.546 55.000 2.38 0.00 43.02 3.85
787 1064 0.526524 CCGAGATCGAGCAACAGGAC 60.527 60.000 2.38 0.00 43.02 3.85
789 1066 0.248825 CTCCGAGATCGAGCAACAGG 60.249 60.000 2.38 0.10 43.02 4.00
791 1068 0.679960 TCCTCCGAGATCGAGCAACA 60.680 55.000 2.38 0.00 43.02 3.33
792 1069 0.030101 CTCCTCCGAGATCGAGCAAC 59.970 60.000 2.38 0.00 43.02 4.17
793 1070 1.103987 CCTCCTCCGAGATCGAGCAA 61.104 60.000 2.38 0.00 43.02 3.91
795 1072 1.228003 TCCTCCTCCGAGATCGAGC 60.228 63.158 3.31 0.00 43.02 5.03
797 1074 0.179043 CAGTCCTCCTCCGAGATCGA 60.179 60.000 3.31 0.00 43.02 3.59
799 1076 1.770294 AACAGTCCTCCTCCGAGATC 58.230 55.000 0.00 0.00 38.52 2.75
811 1124 6.238676 GGAAACTACTGGAAGAAAAACAGTCC 60.239 42.308 0.00 0.00 43.78 3.85
812 1125 6.511282 CGGAAACTACTGGAAGAAAAACAGTC 60.511 42.308 0.00 0.00 43.78 3.51
825 1138 0.038526 ACGAGCACGGAAACTACTGG 60.039 55.000 8.74 0.00 44.46 4.00
857 1174 3.198953 ATCCCAAAACCCCGCACGA 62.199 57.895 0.00 0.00 0.00 4.35
892 1209 4.643463 AGGAGCTGAGATGCAAATCTATG 58.357 43.478 0.00 0.00 34.99 2.23
908 1225 1.073923 CAGTGGTTGGGTTTAGGAGCT 59.926 52.381 0.00 0.00 0.00 4.09
924 1241 2.391616 TCTGGAATGCTGCTACAGTG 57.608 50.000 0.00 0.00 33.43 3.66
935 1252 5.012239 TCCCAAGACAAGAATTCTGGAATG 58.988 41.667 17.08 9.87 0.00 2.67
1070 1414 1.834856 CTGGAGGAAGTCTGGCAGCA 61.835 60.000 10.34 0.00 0.00 4.41
1701 2048 1.374947 GCCCAGGTTGTAGCTCACA 59.625 57.895 0.00 0.00 34.51 3.58
1803 2150 2.617308 GGTGATGTTCTCCATGCTGATG 59.383 50.000 0.00 0.00 32.56 3.07
2430 2777 1.286880 GGCGCTGTTGCACTTGAAT 59.713 52.632 7.64 0.00 39.64 2.57
2568 2924 2.386660 GCTTGGACGAGCAGCAGTC 61.387 63.158 11.38 11.38 42.25 3.51
2569 2925 2.358003 GCTTGGACGAGCAGCAGT 60.358 61.111 6.67 0.00 42.25 4.40
2570 2926 2.047465 AGCTTGGACGAGCAGCAG 60.047 61.111 13.64 0.00 45.12 4.24
2571 2927 2.357881 CAGCTTGGACGAGCAGCA 60.358 61.111 13.64 0.00 45.12 4.41
2572 2928 3.123620 CCAGCTTGGACGAGCAGC 61.124 66.667 13.64 0.00 45.12 5.25
2573 2929 3.123620 GCCAGCTTGGACGAGCAG 61.124 66.667 13.64 5.71 45.12 4.24
2574 2930 3.474486 TTGCCAGCTTGGACGAGCA 62.474 57.895 13.64 0.00 45.12 4.26
2575 2931 2.669569 TTGCCAGCTTGGACGAGC 60.670 61.111 3.30 3.30 40.96 5.03
2576 2932 2.328099 GGTTGCCAGCTTGGACGAG 61.328 63.158 6.40 0.00 40.96 4.18
2577 2933 2.281484 GGTTGCCAGCTTGGACGA 60.281 61.111 6.40 0.00 40.96 4.20
2578 2934 1.898574 AAGGTTGCCAGCTTGGACG 60.899 57.895 0.81 0.00 40.96 4.79
2583 2939 1.999648 TCAATCAAGGTTGCCAGCTT 58.000 45.000 0.00 0.00 41.64 3.74
2584 2940 2.226962 ATCAATCAAGGTTGCCAGCT 57.773 45.000 0.00 0.00 0.00 4.24
2597 2953 7.254658 GCAATCACCCAATCAAATGAATCAATC 60.255 37.037 0.00 0.00 0.00 2.67
2599 2955 5.875910 GCAATCACCCAATCAAATGAATCAA 59.124 36.000 0.00 0.00 0.00 2.57
2600 2956 5.421277 GCAATCACCCAATCAAATGAATCA 58.579 37.500 0.00 0.00 0.00 2.57
2601 2957 4.812626 GGCAATCACCCAATCAAATGAATC 59.187 41.667 0.00 0.00 0.00 2.52
2602 2958 4.225492 TGGCAATCACCCAATCAAATGAAT 59.775 37.500 0.00 0.00 0.00 2.57
2603 2959 3.581770 TGGCAATCACCCAATCAAATGAA 59.418 39.130 0.00 0.00 0.00 2.57
2604 2960 3.171528 TGGCAATCACCCAATCAAATGA 58.828 40.909 0.00 0.00 0.00 2.57
2605 2961 3.613494 TGGCAATCACCCAATCAAATG 57.387 42.857 0.00 0.00 0.00 2.32
2606 2962 4.519213 CAATGGCAATCACCCAATCAAAT 58.481 39.130 0.00 0.00 35.67 2.32
2607 2963 3.869140 GCAATGGCAATCACCCAATCAAA 60.869 43.478 0.00 0.00 40.72 2.69
2621 2977 1.076559 CCAGGAGATGGCAATGGCA 60.077 57.895 12.96 12.96 43.83 4.92
2654 3010 6.537453 TGAACCAGGAGATTGTTTCAAAAA 57.463 33.333 0.00 0.00 0.00 1.94
2655 3011 6.537453 TTGAACCAGGAGATTGTTTCAAAA 57.463 33.333 0.00 0.00 0.00 2.44
2656 3012 6.323482 TGATTGAACCAGGAGATTGTTTCAAA 59.677 34.615 0.00 0.00 0.00 2.69
2657 3013 5.832595 TGATTGAACCAGGAGATTGTTTCAA 59.167 36.000 0.00 0.00 0.00 2.69
2658 3014 5.384336 TGATTGAACCAGGAGATTGTTTCA 58.616 37.500 0.00 0.00 0.00 2.69
2659 3015 5.964958 TGATTGAACCAGGAGATTGTTTC 57.035 39.130 0.00 0.00 0.00 2.78
2660 3016 6.071165 GGATTGATTGAACCAGGAGATTGTTT 60.071 38.462 0.00 0.00 0.00 2.83
2661 3017 5.420104 GGATTGATTGAACCAGGAGATTGTT 59.580 40.000 0.00 0.00 0.00 2.83
2662 3018 4.952335 GGATTGATTGAACCAGGAGATTGT 59.048 41.667 0.00 0.00 0.00 2.71
2663 3019 5.198965 AGGATTGATTGAACCAGGAGATTG 58.801 41.667 0.00 0.00 0.00 2.67
2664 3020 5.463051 AGGATTGATTGAACCAGGAGATT 57.537 39.130 0.00 0.00 0.00 2.40
2665 3021 5.463051 AAGGATTGATTGAACCAGGAGAT 57.537 39.130 0.00 0.00 0.00 2.75
2666 3022 4.934797 AAGGATTGATTGAACCAGGAGA 57.065 40.909 0.00 0.00 0.00 3.71
2677 3033 9.255308 ATGCATGCATGTTCTCAAGGATTGATT 62.255 37.037 31.74 1.48 44.23 2.57
2678 3034 7.866862 ATGCATGCATGTTCTCAAGGATTGAT 61.867 38.462 31.74 1.84 44.23 2.57
2679 3035 6.617882 ATGCATGCATGTTCTCAAGGATTGA 61.618 40.000 31.74 0.00 43.58 2.57
2680 3036 4.441495 ATGCATGCATGTTCTCAAGGATTG 60.441 41.667 31.74 0.00 40.61 2.67
2681 3037 3.093814 TGCATGCATGTTCTCAAGGATT 58.906 40.909 26.79 0.00 0.00 3.01
2682 3038 2.730382 TGCATGCATGTTCTCAAGGAT 58.270 42.857 26.79 0.00 0.00 3.24
2683 3039 2.203470 TGCATGCATGTTCTCAAGGA 57.797 45.000 26.79 0.00 0.00 3.36
2684 3040 2.809446 CATGCATGCATGTTCTCAAGG 58.191 47.619 40.30 20.25 46.20 3.61
2694 3050 1.128200 AGCCCAAATCATGCATGCAT 58.872 45.000 27.46 27.46 37.08 3.96
2695 3051 0.176910 CAGCCCAAATCATGCATGCA 59.823 50.000 25.04 25.04 0.00 3.96
2696 3052 0.177141 ACAGCCCAAATCATGCATGC 59.823 50.000 22.25 11.82 0.00 4.06
2697 3053 2.276201 CAACAGCCCAAATCATGCATG 58.724 47.619 21.07 21.07 0.00 4.06
2698 3054 1.903860 ACAACAGCCCAAATCATGCAT 59.096 42.857 0.00 0.00 0.00 3.96
2699 3055 1.340088 ACAACAGCCCAAATCATGCA 58.660 45.000 0.00 0.00 0.00 3.96
2700 3056 2.460757 AACAACAGCCCAAATCATGC 57.539 45.000 0.00 0.00 0.00 4.06
2701 3057 4.931002 CCTAAAACAACAGCCCAAATCATG 59.069 41.667 0.00 0.00 0.00 3.07
2702 3058 4.592778 ACCTAAAACAACAGCCCAAATCAT 59.407 37.500 0.00 0.00 0.00 2.45
2703 3059 3.964031 ACCTAAAACAACAGCCCAAATCA 59.036 39.130 0.00 0.00 0.00 2.57
2704 3060 4.600692 ACCTAAAACAACAGCCCAAATC 57.399 40.909 0.00 0.00 0.00 2.17
2705 3061 4.163268 ACAACCTAAAACAACAGCCCAAAT 59.837 37.500 0.00 0.00 0.00 2.32
2706 3062 3.515901 ACAACCTAAAACAACAGCCCAAA 59.484 39.130 0.00 0.00 0.00 3.28
2707 3063 3.100671 ACAACCTAAAACAACAGCCCAA 58.899 40.909 0.00 0.00 0.00 4.12
2708 3064 2.741145 ACAACCTAAAACAACAGCCCA 58.259 42.857 0.00 0.00 0.00 5.36
2709 3065 3.887110 AGTACAACCTAAAACAACAGCCC 59.113 43.478 0.00 0.00 0.00 5.19
2710 3066 4.023450 GGAGTACAACCTAAAACAACAGCC 60.023 45.833 0.00 0.00 0.00 4.85
2711 3067 4.023450 GGGAGTACAACCTAAAACAACAGC 60.023 45.833 8.59 0.00 0.00 4.40
2712 3068 5.238650 CAGGGAGTACAACCTAAAACAACAG 59.761 44.000 7.91 0.00 34.71 3.16
2713 3069 5.127491 CAGGGAGTACAACCTAAAACAACA 58.873 41.667 7.91 0.00 34.71 3.33
2714 3070 4.023450 GCAGGGAGTACAACCTAAAACAAC 60.023 45.833 7.91 0.00 34.71 3.32
2715 3071 4.139038 GCAGGGAGTACAACCTAAAACAA 58.861 43.478 7.91 0.00 34.71 2.83
2716 3072 3.746940 GCAGGGAGTACAACCTAAAACA 58.253 45.455 7.91 0.00 34.71 2.83
2717 3073 2.740447 CGCAGGGAGTACAACCTAAAAC 59.260 50.000 7.91 0.00 34.71 2.43
2718 3074 2.369532 ACGCAGGGAGTACAACCTAAAA 59.630 45.455 7.91 0.00 34.71 1.52
2719 3075 1.972795 ACGCAGGGAGTACAACCTAAA 59.027 47.619 7.91 0.00 34.71 1.85
2720 3076 1.547372 GACGCAGGGAGTACAACCTAA 59.453 52.381 7.91 0.00 34.71 2.69
2721 3077 1.180029 GACGCAGGGAGTACAACCTA 58.820 55.000 7.91 0.00 34.71 3.08
2722 3078 1.542187 GGACGCAGGGAGTACAACCT 61.542 60.000 2.76 2.76 37.66 3.50
2723 3079 1.079336 GGACGCAGGGAGTACAACC 60.079 63.158 0.00 0.00 0.00 3.77
2724 3080 1.445582 CGGACGCAGGGAGTACAAC 60.446 63.158 0.00 0.00 0.00 3.32
2725 3081 2.642254 CCGGACGCAGGGAGTACAA 61.642 63.158 0.00 0.00 0.00 2.41
2726 3082 2.482796 TACCGGACGCAGGGAGTACA 62.483 60.000 9.46 0.00 0.00 2.90
2727 3083 1.315257 TTACCGGACGCAGGGAGTAC 61.315 60.000 9.46 0.00 0.00 2.73
2728 3084 0.396139 ATTACCGGACGCAGGGAGTA 60.396 55.000 9.46 0.00 0.00 2.59
2729 3085 0.396139 TATTACCGGACGCAGGGAGT 60.396 55.000 9.46 0.00 0.00 3.85
2730 3086 0.031721 GTATTACCGGACGCAGGGAG 59.968 60.000 9.46 0.00 0.00 4.30
2731 3087 0.396139 AGTATTACCGGACGCAGGGA 60.396 55.000 9.46 0.00 0.00 4.20
2732 3088 0.462789 AAGTATTACCGGACGCAGGG 59.537 55.000 9.46 0.00 0.00 4.45
2733 3089 1.134907 ACAAGTATTACCGGACGCAGG 60.135 52.381 9.46 0.00 0.00 4.85
2734 3090 2.190981 GACAAGTATTACCGGACGCAG 58.809 52.381 9.46 0.00 0.00 5.18
2735 3091 1.545136 TGACAAGTATTACCGGACGCA 59.455 47.619 9.46 0.00 0.00 5.24
2736 3092 2.282701 TGACAAGTATTACCGGACGC 57.717 50.000 9.46 0.00 0.00 5.19
2737 3093 4.036567 TGATGACAAGTATTACCGGACG 57.963 45.455 9.46 0.00 0.00 4.79
2738 3094 6.730960 TTTTGATGACAAGTATTACCGGAC 57.269 37.500 9.46 0.00 37.32 4.79
2739 3095 6.317642 CCATTTTGATGACAAGTATTACCGGA 59.682 38.462 9.46 0.00 37.32 5.14
2740 3096 6.317642 TCCATTTTGATGACAAGTATTACCGG 59.682 38.462 0.00 0.00 37.32 5.28
2741 3097 7.315247 TCCATTTTGATGACAAGTATTACCG 57.685 36.000 0.00 0.00 37.32 4.02
2879 3237 1.053424 TAGTCTGGGTGGTGTTGGTC 58.947 55.000 0.00 0.00 0.00 4.02
2919 3277 3.110447 GTTGGTGGTCTACAACGGTTA 57.890 47.619 0.00 0.00 40.67 2.85
2975 3333 6.600822 TCTGGAGCTTGTTACTAGTACGTTAT 59.399 38.462 0.91 0.00 0.00 1.89
3039 3397 2.031682 CGCTTTGTGGAAACAGAGGAAG 60.032 50.000 0.00 0.00 44.46 3.46
3062 3463 1.204941 GCACGAAGAAGCTTCCTAGGA 59.795 52.381 22.81 7.62 0.00 2.94
3129 3530 2.357154 GGGACACCCTGCAGATTAACAT 60.357 50.000 17.39 0.00 41.34 2.71
3201 3602 3.784511 ACAGGATGAGGATAATGCTGG 57.215 47.619 9.31 0.00 39.69 4.85
3253 3654 0.548510 GAGGGCTAGACATGGGCTTT 59.451 55.000 0.00 0.00 32.54 3.51
3263 3664 1.076923 GTCGGACAGGAGGGCTAGA 60.077 63.158 2.62 0.00 0.00 2.43
3341 3742 2.427095 GGCAAAGTGTGTTTGGAGAAGT 59.573 45.455 0.04 0.00 0.00 3.01
3364 3765 1.150536 GGATGGCCTAAATCGCCCA 59.849 57.895 3.32 0.00 46.48 5.36
3422 3823 1.980765 TGGACTTGCTCATCTTCTGGT 59.019 47.619 0.00 0.00 0.00 4.00
3578 3979 5.048782 GGTGATCAATACAAGAACAGTGCAA 60.049 40.000 0.00 0.00 0.00 4.08
3584 3985 4.503910 CGAGGGTGATCAATACAAGAACA 58.496 43.478 0.00 0.00 0.00 3.18
3675 4076 4.014406 TCAGGTGATAGCGTTCTGTTCTA 58.986 43.478 0.00 0.00 0.00 2.10
3732 4133 2.104792 TCGAAGATAGATTGGCAAGGGG 59.895 50.000 5.96 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.