Multiple sequence alignment - TraesCS7B01G254600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G254600 | chr7B | 100.000 | 3484 | 0 | 0 | 1 | 3484 | 469471252 | 469467769 | 0.000000e+00 | 6434.0 |
1 | TraesCS7B01G254600 | chr7B | 89.720 | 107 | 10 | 1 | 1902 | 2007 | 216938228 | 216938334 | 6.070000e-28 | 135.0 |
2 | TraesCS7B01G254600 | chr7B | 87.156 | 109 | 13 | 1 | 1901 | 2008 | 513654310 | 513654202 | 4.720000e-24 | 122.0 |
3 | TraesCS7B01G254600 | chr4D | 95.459 | 3193 | 61 | 30 | 225 | 3401 | 417932567 | 417935691 | 0.000000e+00 | 5016.0 |
4 | TraesCS7B01G254600 | chr4D | 97.899 | 714 | 13 | 2 | 596 | 1308 | 417896576 | 417897288 | 0.000000e+00 | 1234.0 |
5 | TraesCS7B01G254600 | chr4D | 91.420 | 641 | 21 | 11 | 2763 | 3401 | 417936070 | 417936678 | 0.000000e+00 | 848.0 |
6 | TraesCS7B01G254600 | chr4D | 96.739 | 92 | 3 | 0 | 3393 | 3484 | 417938570 | 417938661 | 1.670000e-33 | 154.0 |
7 | TraesCS7B01G254600 | chr7D | 96.091 | 2200 | 49 | 18 | 225 | 2415 | 340298341 | 340300512 | 0.000000e+00 | 3552.0 |
8 | TraesCS7B01G254600 | chr7D | 96.768 | 1083 | 33 | 1 | 2402 | 3484 | 340311610 | 340312690 | 0.000000e+00 | 1805.0 |
9 | TraesCS7B01G254600 | chr7D | 92.509 | 534 | 17 | 4 | 236 | 769 | 340261030 | 340261540 | 0.000000e+00 | 743.0 |
10 | TraesCS7B01G254600 | chr4B | 82.293 | 1378 | 188 | 37 | 490 | 1827 | 86362981 | 86364342 | 0.000000e+00 | 1142.0 |
11 | TraesCS7B01G254600 | chr4A | 81.458 | 1084 | 164 | 21 | 778 | 1834 | 538895914 | 538894841 | 0.000000e+00 | 854.0 |
12 | TraesCS7B01G254600 | chr5A | 87.850 | 107 | 12 | 1 | 1901 | 2006 | 559809633 | 559809527 | 1.310000e-24 | 124.0 |
13 | TraesCS7B01G254600 | chr7A | 85.047 | 107 | 14 | 2 | 1901 | 2006 | 88983548 | 88983443 | 1.320000e-19 | 108.0 |
14 | TraesCS7B01G254600 | chr1D | 92.424 | 66 | 4 | 1 | 1937 | 2001 | 345266739 | 345266674 | 3.700000e-15 | 93.5 |
15 | TraesCS7B01G254600 | chr1B | 83.333 | 102 | 16 | 1 | 1901 | 2001 | 465698736 | 465698837 | 3.700000e-15 | 93.5 |
16 | TraesCS7B01G254600 | chr5D | 81.982 | 111 | 13 | 6 | 1901 | 2007 | 268733706 | 268733813 | 1.720000e-13 | 87.9 |
17 | TraesCS7B01G254600 | chr2A | 97.368 | 38 | 1 | 0 | 182 | 219 | 26859158 | 26859195 | 8.070000e-07 | 65.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G254600 | chr7B | 469467769 | 469471252 | 3483 | True | 6434 | 6434 | 100.000000 | 1 | 3484 | 1 | chr7B.!!$R1 | 3483 |
1 | TraesCS7B01G254600 | chr4D | 417932567 | 417938661 | 6094 | False | 2006 | 5016 | 94.539333 | 225 | 3484 | 3 | chr4D.!!$F2 | 3259 |
2 | TraesCS7B01G254600 | chr4D | 417896576 | 417897288 | 712 | False | 1234 | 1234 | 97.899000 | 596 | 1308 | 1 | chr4D.!!$F1 | 712 |
3 | TraesCS7B01G254600 | chr7D | 340298341 | 340300512 | 2171 | False | 3552 | 3552 | 96.091000 | 225 | 2415 | 1 | chr7D.!!$F2 | 2190 |
4 | TraesCS7B01G254600 | chr7D | 340311610 | 340312690 | 1080 | False | 1805 | 1805 | 96.768000 | 2402 | 3484 | 1 | chr7D.!!$F3 | 1082 |
5 | TraesCS7B01G254600 | chr7D | 340261030 | 340261540 | 510 | False | 743 | 743 | 92.509000 | 236 | 769 | 1 | chr7D.!!$F1 | 533 |
6 | TraesCS7B01G254600 | chr4B | 86362981 | 86364342 | 1361 | False | 1142 | 1142 | 82.293000 | 490 | 1827 | 1 | chr4B.!!$F1 | 1337 |
7 | TraesCS7B01G254600 | chr4A | 538894841 | 538895914 | 1073 | True | 854 | 854 | 81.458000 | 778 | 1834 | 1 | chr4A.!!$R1 | 1056 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
139 | 140 | 0.033920 | GCAAAAGGGAAGTTGGCAGG | 59.966 | 55.000 | 0.00 | 0.0 | 0.00 | 4.85 | F |
717 | 737 | 0.035820 | ATAAACGACACCACGGCCAT | 60.036 | 50.000 | 2.24 | 0.0 | 37.61 | 4.40 | F |
1463 | 1505 | 1.522569 | GCGCTTCCACCTGGACTAT | 59.477 | 57.895 | 0.00 | 0.0 | 45.39 | 2.12 | F |
2057 | 2110 | 0.038744 | CAGTCCCAATGCTCCACCTT | 59.961 | 55.000 | 0.00 | 0.0 | 0.00 | 3.50 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1463 | 1505 | 0.321919 | ACTCGTAGCCGTAGTGGTCA | 60.322 | 55.000 | 0.00 | 0.0 | 41.21 | 4.02 | R |
1994 | 2046 | 0.994247 | TACAGGTGTACTCCCTCCGA | 59.006 | 55.000 | 10.36 | 0.0 | 0.00 | 4.55 | R |
2379 | 2433 | 2.290093 | GCTGCTTCTTGTGAGGATATGC | 59.710 | 50.000 | 0.00 | 0.0 | 0.00 | 3.14 | R |
3095 | 4143 | 3.424487 | TGCGTCATGTTTTGCGATAATG | 58.576 | 40.909 | 0.00 | 0.0 | 0.00 | 1.90 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
47 | 48 | 9.581099 | AAAAGAAGAACGAAGAAATAAAAAGCA | 57.419 | 25.926 | 0.00 | 0.00 | 0.00 | 3.91 |
48 | 49 | 9.581099 | AAAGAAGAACGAAGAAATAAAAAGCAA | 57.419 | 25.926 | 0.00 | 0.00 | 0.00 | 3.91 |
49 | 50 | 9.581099 | AAGAAGAACGAAGAAATAAAAAGCAAA | 57.419 | 25.926 | 0.00 | 0.00 | 0.00 | 3.68 |
50 | 51 | 9.237846 | AGAAGAACGAAGAAATAAAAAGCAAAG | 57.762 | 29.630 | 0.00 | 0.00 | 0.00 | 2.77 |
51 | 52 | 9.233232 | GAAGAACGAAGAAATAAAAAGCAAAGA | 57.767 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
52 | 53 | 9.581099 | AAGAACGAAGAAATAAAAAGCAAAGAA | 57.419 | 25.926 | 0.00 | 0.00 | 0.00 | 2.52 |
53 | 54 | 9.237846 | AGAACGAAGAAATAAAAAGCAAAGAAG | 57.762 | 29.630 | 0.00 | 0.00 | 0.00 | 2.85 |
54 | 55 | 9.233232 | GAACGAAGAAATAAAAAGCAAAGAAGA | 57.767 | 29.630 | 0.00 | 0.00 | 0.00 | 2.87 |
55 | 56 | 8.788409 | ACGAAGAAATAAAAAGCAAAGAAGAG | 57.212 | 30.769 | 0.00 | 0.00 | 0.00 | 2.85 |
56 | 57 | 8.621286 | ACGAAGAAATAAAAAGCAAAGAAGAGA | 58.379 | 29.630 | 0.00 | 0.00 | 0.00 | 3.10 |
57 | 58 | 9.450807 | CGAAGAAATAAAAAGCAAAGAAGAGAA | 57.549 | 29.630 | 0.00 | 0.00 | 0.00 | 2.87 |
60 | 61 | 9.755804 | AGAAATAAAAAGCAAAGAAGAGAAAGG | 57.244 | 29.630 | 0.00 | 0.00 | 0.00 | 3.11 |
61 | 62 | 9.750125 | GAAATAAAAAGCAAAGAAGAGAAAGGA | 57.250 | 29.630 | 0.00 | 0.00 | 0.00 | 3.36 |
65 | 66 | 8.846943 | AAAAAGCAAAGAAGAGAAAGGAAAAA | 57.153 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
66 | 67 | 9.453572 | AAAAAGCAAAGAAGAGAAAGGAAAAAT | 57.546 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
107 | 108 | 9.702494 | AAAAGAAAGAATAAAAGATGGCAGAAG | 57.298 | 29.630 | 0.00 | 0.00 | 0.00 | 2.85 |
108 | 109 | 6.861144 | AGAAAGAATAAAAGATGGCAGAAGC | 58.139 | 36.000 | 0.00 | 0.00 | 41.10 | 3.86 |
109 | 110 | 6.662663 | AGAAAGAATAAAAGATGGCAGAAGCT | 59.337 | 34.615 | 0.00 | 0.00 | 41.70 | 3.74 |
110 | 111 | 7.831193 | AGAAAGAATAAAAGATGGCAGAAGCTA | 59.169 | 33.333 | 0.00 | 0.00 | 41.70 | 3.32 |
111 | 112 | 8.530804 | AAAGAATAAAAGATGGCAGAAGCTAT | 57.469 | 30.769 | 0.00 | 0.00 | 45.42 | 2.97 |
112 | 113 | 9.632638 | AAAGAATAAAAGATGGCAGAAGCTATA | 57.367 | 29.630 | 0.00 | 0.00 | 42.52 | 1.31 |
113 | 114 | 9.632638 | AAGAATAAAAGATGGCAGAAGCTATAA | 57.367 | 29.630 | 0.00 | 0.00 | 42.52 | 0.98 |
114 | 115 | 9.282569 | AGAATAAAAGATGGCAGAAGCTATAAG | 57.717 | 33.333 | 0.00 | 0.00 | 42.52 | 1.73 |
115 | 116 | 8.986929 | AATAAAAGATGGCAGAAGCTATAAGT | 57.013 | 30.769 | 0.00 | 0.00 | 42.52 | 2.24 |
116 | 117 | 6.690194 | AAAAGATGGCAGAAGCTATAAGTG | 57.310 | 37.500 | 0.00 | 0.00 | 42.52 | 3.16 |
117 | 118 | 5.620738 | AAGATGGCAGAAGCTATAAGTGA | 57.379 | 39.130 | 0.00 | 0.00 | 42.52 | 3.41 |
118 | 119 | 5.620738 | AGATGGCAGAAGCTATAAGTGAA | 57.379 | 39.130 | 0.00 | 0.00 | 42.52 | 3.18 |
119 | 120 | 5.363939 | AGATGGCAGAAGCTATAAGTGAAC | 58.636 | 41.667 | 0.00 | 0.00 | 42.52 | 3.18 |
120 | 121 | 3.521560 | TGGCAGAAGCTATAAGTGAACG | 58.478 | 45.455 | 0.00 | 0.00 | 41.70 | 3.95 |
121 | 122 | 2.285488 | GGCAGAAGCTATAAGTGAACGC | 59.715 | 50.000 | 0.00 | 0.00 | 41.70 | 4.84 |
122 | 123 | 2.930040 | GCAGAAGCTATAAGTGAACGCA | 59.070 | 45.455 | 0.00 | 0.00 | 37.91 | 5.24 |
123 | 124 | 3.370978 | GCAGAAGCTATAAGTGAACGCAA | 59.629 | 43.478 | 0.00 | 0.00 | 37.91 | 4.85 |
124 | 125 | 4.142902 | GCAGAAGCTATAAGTGAACGCAAA | 60.143 | 41.667 | 0.00 | 0.00 | 37.91 | 3.68 |
125 | 126 | 5.616866 | GCAGAAGCTATAAGTGAACGCAAAA | 60.617 | 40.000 | 0.00 | 0.00 | 37.91 | 2.44 |
126 | 127 | 6.017933 | CAGAAGCTATAAGTGAACGCAAAAG | 58.982 | 40.000 | 0.00 | 0.00 | 0.00 | 2.27 |
127 | 128 | 4.946784 | AGCTATAAGTGAACGCAAAAGG | 57.053 | 40.909 | 0.00 | 0.00 | 0.00 | 3.11 |
128 | 129 | 3.689649 | AGCTATAAGTGAACGCAAAAGGG | 59.310 | 43.478 | 0.00 | 0.00 | 0.00 | 3.95 |
129 | 130 | 3.687698 | GCTATAAGTGAACGCAAAAGGGA | 59.312 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
130 | 131 | 4.155280 | GCTATAAGTGAACGCAAAAGGGAA | 59.845 | 41.667 | 0.00 | 0.00 | 0.00 | 3.97 |
131 | 132 | 4.766404 | ATAAGTGAACGCAAAAGGGAAG | 57.234 | 40.909 | 0.00 | 0.00 | 0.00 | 3.46 |
132 | 133 | 2.052782 | AGTGAACGCAAAAGGGAAGT | 57.947 | 45.000 | 0.00 | 0.00 | 0.00 | 3.01 |
133 | 134 | 2.375146 | AGTGAACGCAAAAGGGAAGTT | 58.625 | 42.857 | 0.00 | 0.00 | 0.00 | 2.66 |
134 | 135 | 2.099098 | AGTGAACGCAAAAGGGAAGTTG | 59.901 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
135 | 136 | 1.407258 | TGAACGCAAAAGGGAAGTTGG | 59.593 | 47.619 | 0.00 | 0.00 | 0.00 | 3.77 |
136 | 137 | 0.104120 | AACGCAAAAGGGAAGTTGGC | 59.896 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
137 | 138 | 1.040339 | ACGCAAAAGGGAAGTTGGCA | 61.040 | 50.000 | 0.00 | 0.00 | 0.00 | 4.92 |
138 | 139 | 0.318955 | CGCAAAAGGGAAGTTGGCAG | 60.319 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
139 | 140 | 0.033920 | GCAAAAGGGAAGTTGGCAGG | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
140 | 141 | 0.681175 | CAAAAGGGAAGTTGGCAGGG | 59.319 | 55.000 | 0.00 | 0.00 | 0.00 | 4.45 |
141 | 142 | 0.264657 | AAAAGGGAAGTTGGCAGGGT | 59.735 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
142 | 143 | 0.469892 | AAAGGGAAGTTGGCAGGGTG | 60.470 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
143 | 144 | 2.283173 | GGGAAGTTGGCAGGGTGG | 60.283 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
144 | 145 | 2.991540 | GGAAGTTGGCAGGGTGGC | 60.992 | 66.667 | 0.00 | 0.00 | 44.03 | 5.01 |
145 | 146 | 2.116125 | GAAGTTGGCAGGGTGGCT | 59.884 | 61.111 | 1.91 | 0.00 | 44.10 | 4.75 |
146 | 147 | 1.378762 | GAAGTTGGCAGGGTGGCTA | 59.621 | 57.895 | 1.91 | 0.00 | 44.10 | 3.93 |
147 | 148 | 0.678048 | GAAGTTGGCAGGGTGGCTAG | 60.678 | 60.000 | 1.91 | 0.00 | 44.10 | 3.42 |
148 | 149 | 2.751837 | GTTGGCAGGGTGGCTAGC | 60.752 | 66.667 | 6.04 | 6.04 | 44.10 | 3.42 |
149 | 150 | 2.935481 | TTGGCAGGGTGGCTAGCT | 60.935 | 61.111 | 15.72 | 0.00 | 44.10 | 3.32 |
150 | 151 | 2.971598 | TTGGCAGGGTGGCTAGCTC | 61.972 | 63.158 | 15.72 | 8.23 | 44.10 | 4.09 |
151 | 152 | 4.537433 | GGCAGGGTGGCTAGCTCG | 62.537 | 72.222 | 15.72 | 0.00 | 40.14 | 5.03 |
152 | 153 | 4.537433 | GCAGGGTGGCTAGCTCGG | 62.537 | 72.222 | 15.72 | 4.45 | 0.00 | 4.63 |
153 | 154 | 3.854669 | CAGGGTGGCTAGCTCGGG | 61.855 | 72.222 | 15.72 | 0.00 | 0.00 | 5.14 |
154 | 155 | 4.400251 | AGGGTGGCTAGCTCGGGT | 62.400 | 66.667 | 15.72 | 0.00 | 0.00 | 5.28 |
155 | 156 | 3.400054 | GGGTGGCTAGCTCGGGTT | 61.400 | 66.667 | 15.72 | 0.00 | 0.00 | 4.11 |
156 | 157 | 2.669240 | GGTGGCTAGCTCGGGTTT | 59.331 | 61.111 | 15.72 | 0.00 | 0.00 | 3.27 |
157 | 158 | 1.449778 | GGTGGCTAGCTCGGGTTTC | 60.450 | 63.158 | 15.72 | 0.00 | 0.00 | 2.78 |
158 | 159 | 1.295423 | GTGGCTAGCTCGGGTTTCA | 59.705 | 57.895 | 15.72 | 0.00 | 0.00 | 2.69 |
159 | 160 | 0.741221 | GTGGCTAGCTCGGGTTTCAG | 60.741 | 60.000 | 15.72 | 0.00 | 0.00 | 3.02 |
160 | 161 | 1.192146 | TGGCTAGCTCGGGTTTCAGT | 61.192 | 55.000 | 15.72 | 0.00 | 0.00 | 3.41 |
161 | 162 | 0.460459 | GGCTAGCTCGGGTTTCAGTC | 60.460 | 60.000 | 15.72 | 0.00 | 0.00 | 3.51 |
162 | 163 | 0.246635 | GCTAGCTCGGGTTTCAGTCA | 59.753 | 55.000 | 7.70 | 0.00 | 0.00 | 3.41 |
163 | 164 | 1.337823 | GCTAGCTCGGGTTTCAGTCAA | 60.338 | 52.381 | 7.70 | 0.00 | 0.00 | 3.18 |
164 | 165 | 2.611518 | CTAGCTCGGGTTTCAGTCAAG | 58.388 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
165 | 166 | 0.603975 | AGCTCGGGTTTCAGTCAAGC | 60.604 | 55.000 | 0.00 | 0.00 | 0.00 | 4.01 |
166 | 167 | 1.578206 | GCTCGGGTTTCAGTCAAGCC | 61.578 | 60.000 | 0.00 | 0.00 | 40.40 | 4.35 |
168 | 169 | 3.668386 | GGGTTTCAGTCAAGCCCG | 58.332 | 61.111 | 0.00 | 0.00 | 45.02 | 6.13 |
169 | 170 | 2.626780 | GGGTTTCAGTCAAGCCCGC | 61.627 | 63.158 | 0.00 | 0.00 | 45.02 | 6.13 |
170 | 171 | 2.556287 | GTTTCAGTCAAGCCCGCG | 59.444 | 61.111 | 0.00 | 0.00 | 0.00 | 6.46 |
171 | 172 | 2.668212 | TTTCAGTCAAGCCCGCGG | 60.668 | 61.111 | 21.04 | 21.04 | 0.00 | 6.46 |
172 | 173 | 3.469863 | TTTCAGTCAAGCCCGCGGT | 62.470 | 57.895 | 26.12 | 2.55 | 0.00 | 5.68 |
173 | 174 | 4.680237 | TCAGTCAAGCCCGCGGTG | 62.680 | 66.667 | 26.12 | 16.51 | 0.00 | 4.94 |
185 | 186 | 2.097728 | GCGGTGCGGTTTCGAATC | 59.902 | 61.111 | 0.00 | 0.00 | 39.00 | 2.52 |
186 | 187 | 2.782615 | CGGTGCGGTTTCGAATCC | 59.217 | 61.111 | 14.23 | 14.23 | 39.00 | 3.01 |
187 | 188 | 1.740296 | CGGTGCGGTTTCGAATCCT | 60.740 | 57.895 | 20.24 | 0.00 | 39.00 | 3.24 |
188 | 189 | 1.296056 | CGGTGCGGTTTCGAATCCTT | 61.296 | 55.000 | 20.24 | 0.00 | 39.00 | 3.36 |
189 | 190 | 0.168128 | GGTGCGGTTTCGAATCCTTG | 59.832 | 55.000 | 20.24 | 9.13 | 39.00 | 3.61 |
190 | 191 | 0.872388 | GTGCGGTTTCGAATCCTTGT | 59.128 | 50.000 | 20.24 | 0.00 | 39.00 | 3.16 |
191 | 192 | 1.136057 | GTGCGGTTTCGAATCCTTGTC | 60.136 | 52.381 | 20.24 | 9.24 | 39.00 | 3.18 |
192 | 193 | 1.153353 | GCGGTTTCGAATCCTTGTCA | 58.847 | 50.000 | 20.24 | 0.00 | 39.00 | 3.58 |
193 | 194 | 1.128692 | GCGGTTTCGAATCCTTGTCAG | 59.871 | 52.381 | 20.24 | 7.29 | 39.00 | 3.51 |
194 | 195 | 1.128692 | CGGTTTCGAATCCTTGTCAGC | 59.871 | 52.381 | 20.24 | 2.97 | 39.00 | 4.26 |
195 | 196 | 2.427506 | GGTTTCGAATCCTTGTCAGCT | 58.572 | 47.619 | 16.50 | 0.00 | 0.00 | 4.24 |
196 | 197 | 2.416893 | GGTTTCGAATCCTTGTCAGCTC | 59.583 | 50.000 | 16.50 | 0.00 | 0.00 | 4.09 |
197 | 198 | 3.330267 | GTTTCGAATCCTTGTCAGCTCT | 58.670 | 45.455 | 0.00 | 0.00 | 0.00 | 4.09 |
198 | 199 | 2.949451 | TCGAATCCTTGTCAGCTCTC | 57.051 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
199 | 200 | 1.478510 | TCGAATCCTTGTCAGCTCTCC | 59.521 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
200 | 201 | 1.480137 | CGAATCCTTGTCAGCTCTCCT | 59.520 | 52.381 | 0.00 | 0.00 | 0.00 | 3.69 |
201 | 202 | 2.093764 | CGAATCCTTGTCAGCTCTCCTT | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
202 | 203 | 3.618507 | CGAATCCTTGTCAGCTCTCCTTT | 60.619 | 47.826 | 0.00 | 0.00 | 0.00 | 3.11 |
203 | 204 | 4.331108 | GAATCCTTGTCAGCTCTCCTTTT | 58.669 | 43.478 | 0.00 | 0.00 | 0.00 | 2.27 |
204 | 205 | 3.864789 | TCCTTGTCAGCTCTCCTTTTT | 57.135 | 42.857 | 0.00 | 0.00 | 0.00 | 1.94 |
221 | 222 | 3.701532 | TTTTTGCACCGGTTTACAGAG | 57.298 | 42.857 | 2.97 | 0.00 | 0.00 | 3.35 |
222 | 223 | 0.948678 | TTTGCACCGGTTTACAGAGC | 59.051 | 50.000 | 2.97 | 3.60 | 0.00 | 4.09 |
223 | 224 | 0.107831 | TTGCACCGGTTTACAGAGCT | 59.892 | 50.000 | 2.97 | 0.00 | 0.00 | 4.09 |
224 | 225 | 0.320421 | TGCACCGGTTTACAGAGCTC | 60.320 | 55.000 | 2.97 | 5.27 | 0.00 | 4.09 |
225 | 226 | 0.037232 | GCACCGGTTTACAGAGCTCT | 60.037 | 55.000 | 11.45 | 11.45 | 0.00 | 4.09 |
226 | 227 | 1.997669 | CACCGGTTTACAGAGCTCTC | 58.002 | 55.000 | 14.96 | 1.46 | 0.00 | 3.20 |
227 | 228 | 0.526662 | ACCGGTTTACAGAGCTCTCG | 59.473 | 55.000 | 14.96 | 13.18 | 34.09 | 4.04 |
228 | 229 | 0.526662 | CCGGTTTACAGAGCTCTCGT | 59.473 | 55.000 | 14.96 | 17.30 | 34.09 | 4.18 |
229 | 230 | 1.467713 | CCGGTTTACAGAGCTCTCGTC | 60.468 | 57.143 | 14.96 | 4.40 | 34.09 | 4.20 |
298 | 301 | 1.249407 | CTAGTAGATGAGACCGGCCC | 58.751 | 60.000 | 0.00 | 0.00 | 0.00 | 5.80 |
318 | 321 | 0.185901 | AGCCCAAAGACCACACACAT | 59.814 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
329 | 332 | 2.880890 | ACCACACACATCAGAGAAAAGC | 59.119 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
500 | 503 | 5.371769 | TCCTCATCCATCTCCAATTGATCTT | 59.628 | 40.000 | 7.12 | 0.00 | 0.00 | 2.40 |
717 | 737 | 0.035820 | ATAAACGACACCACGGCCAT | 60.036 | 50.000 | 2.24 | 0.00 | 37.61 | 4.40 |
720 | 740 | 2.509336 | CGACACCACGGCCATCTC | 60.509 | 66.667 | 2.24 | 0.00 | 0.00 | 2.75 |
1240 | 1270 | 1.666553 | GGTGTCATGGCGTTCGTCA | 60.667 | 57.895 | 1.27 | 1.27 | 0.00 | 4.35 |
1463 | 1505 | 1.522569 | GCGCTTCCACCTGGACTAT | 59.477 | 57.895 | 0.00 | 0.00 | 45.39 | 2.12 |
1890 | 1942 | 5.830912 | TCCTCTTAATTTTGTGTTGTGCAG | 58.169 | 37.500 | 0.00 | 0.00 | 0.00 | 4.41 |
1906 | 1958 | 6.148811 | TGTTGTGCAGCTAATTAACTACTTCC | 59.851 | 38.462 | 0.00 | 0.00 | 0.00 | 3.46 |
1994 | 2046 | 2.736144 | TGAGCGTCAAGTAATTCCGT | 57.264 | 45.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2012 | 2065 | 0.611340 | GTCGGAGGGAGTACACCTGT | 60.611 | 60.000 | 13.22 | 0.00 | 38.79 | 4.00 |
2037 | 2090 | 5.913137 | TGCACAAACCAAGATAATTAGGG | 57.087 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
2056 | 2109 | 1.687612 | CAGTCCCAATGCTCCACCT | 59.312 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
2057 | 2110 | 0.038744 | CAGTCCCAATGCTCCACCTT | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 3.50 |
2058 | 2111 | 0.038744 | AGTCCCAATGCTCCACCTTG | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2169 | 2223 | 2.119029 | GTTCTACCATTGCCCGCCC | 61.119 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
2211 | 2265 | 6.315091 | ATGAGAACATGAAGCATCTATTGC | 57.685 | 37.500 | 0.00 | 0.00 | 42.50 | 3.56 |
2255 | 2309 | 9.971922 | ACAAGATAATAAAGGAATATGCTTTGC | 57.028 | 29.630 | 7.06 | 0.00 | 38.49 | 3.68 |
2262 | 2316 | 9.768662 | AATAAAGGAATATGCTTTGCTAATTGG | 57.231 | 29.630 | 7.06 | 0.00 | 38.49 | 3.16 |
2265 | 2319 | 4.746611 | GGAATATGCTTTGCTAATTGGTGC | 59.253 | 41.667 | 0.00 | 0.00 | 0.00 | 5.01 |
2266 | 2320 | 5.341872 | AATATGCTTTGCTAATTGGTGCA | 57.658 | 34.783 | 0.00 | 0.00 | 37.42 | 4.57 |
2267 | 2321 | 3.681593 | ATGCTTTGCTAATTGGTGCAA | 57.318 | 38.095 | 10.02 | 10.02 | 45.83 | 4.08 |
2268 | 2322 | 3.681593 | TGCTTTGCTAATTGGTGCAAT | 57.318 | 38.095 | 13.37 | 0.00 | 46.55 | 3.56 |
2269 | 2323 | 4.005487 | TGCTTTGCTAATTGGTGCAATT | 57.995 | 36.364 | 13.37 | 0.00 | 46.55 | 2.32 |
2270 | 2324 | 3.747010 | TGCTTTGCTAATTGGTGCAATTG | 59.253 | 39.130 | 13.37 | 0.00 | 46.55 | 2.32 |
2271 | 2325 | 3.747529 | GCTTTGCTAATTGGTGCAATTGT | 59.252 | 39.130 | 7.40 | 0.00 | 46.55 | 2.71 |
2272 | 2326 | 4.213906 | GCTTTGCTAATTGGTGCAATTGTT | 59.786 | 37.500 | 7.40 | 0.00 | 46.55 | 2.83 |
2273 | 2327 | 5.670149 | TTTGCTAATTGGTGCAATTGTTG | 57.330 | 34.783 | 7.40 | 0.00 | 46.55 | 3.33 |
2274 | 2328 | 4.333913 | TGCTAATTGGTGCAATTGTTGT | 57.666 | 36.364 | 7.40 | 0.00 | 42.91 | 3.32 |
2275 | 2329 | 4.701765 | TGCTAATTGGTGCAATTGTTGTT | 58.298 | 34.783 | 7.40 | 0.00 | 42.91 | 2.83 |
2276 | 2330 | 5.121811 | TGCTAATTGGTGCAATTGTTGTTT | 58.878 | 33.333 | 7.40 | 0.00 | 42.91 | 2.83 |
2277 | 2331 | 5.587844 | TGCTAATTGGTGCAATTGTTGTTTT | 59.412 | 32.000 | 7.40 | 0.00 | 42.91 | 2.43 |
2278 | 2332 | 6.763135 | TGCTAATTGGTGCAATTGTTGTTTTA | 59.237 | 30.769 | 7.40 | 0.00 | 42.91 | 1.52 |
2379 | 2433 | 1.977293 | GCCAGGAACCCAGCTAGAGG | 61.977 | 65.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2441 | 2501 | 1.507141 | CGGTTGGTGAACAGGAGCAC | 61.507 | 60.000 | 0.00 | 0.00 | 33.27 | 4.40 |
2485 | 2545 | 4.141413 | TGGGGATGAGGATAATGTGTGAAG | 60.141 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
2595 | 2655 | 4.543590 | TGATTGGTCAGGAAGAAGACTC | 57.456 | 45.455 | 0.00 | 0.00 | 35.18 | 3.36 |
2627 | 2687 | 5.163591 | TGCTCTTATTTGTACGCTAGCTGTA | 60.164 | 40.000 | 13.93 | 13.46 | 0.00 | 2.74 |
2698 | 2758 | 7.385267 | ACTCTTGATGATATGGATAGCAGTTC | 58.615 | 38.462 | 0.00 | 0.00 | 31.59 | 3.01 |
2713 | 2773 | 4.987832 | AGCAGTTCTTCGTAGTACATGAG | 58.012 | 43.478 | 0.00 | 0.00 | 0.00 | 2.90 |
2790 | 2850 | 7.440523 | ACTGAGATTTAACAATGTCTTGGTC | 57.559 | 36.000 | 0.00 | 0.00 | 34.41 | 4.02 |
2846 | 2906 | 1.802136 | CGTGCATTTTGTGTGTTGGCT | 60.802 | 47.619 | 0.00 | 0.00 | 0.00 | 4.75 |
2916 | 2976 | 1.598407 | TTGCCGCACGCCTTTCTTA | 60.598 | 52.632 | 0.00 | 0.00 | 36.24 | 2.10 |
2937 | 2997 | 8.080083 | TCTTATAATCCGGCTTTATTTTCGTC | 57.920 | 34.615 | 12.80 | 0.00 | 0.00 | 4.20 |
3070 | 4118 | 4.556233 | GGTTTTCTTTGCCATACCAGTTC | 58.444 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
3071 | 4119 | 4.280929 | GGTTTTCTTTGCCATACCAGTTCT | 59.719 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
3299 | 4347 | 1.609072 | GCAACTTGAGGGACCAACTTC | 59.391 | 52.381 | 0.00 | 0.00 | 0.00 | 3.01 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 22 | 9.581099 | TGCTTTTTATTTCTTCGTTCTTCTTTT | 57.419 | 25.926 | 0.00 | 0.00 | 0.00 | 2.27 |
22 | 23 | 9.581099 | TTGCTTTTTATTTCTTCGTTCTTCTTT | 57.419 | 25.926 | 0.00 | 0.00 | 0.00 | 2.52 |
23 | 24 | 9.581099 | TTTGCTTTTTATTTCTTCGTTCTTCTT | 57.419 | 25.926 | 0.00 | 0.00 | 0.00 | 2.52 |
24 | 25 | 9.237846 | CTTTGCTTTTTATTTCTTCGTTCTTCT | 57.762 | 29.630 | 0.00 | 0.00 | 0.00 | 2.85 |
25 | 26 | 9.233232 | TCTTTGCTTTTTATTTCTTCGTTCTTC | 57.767 | 29.630 | 0.00 | 0.00 | 0.00 | 2.87 |
26 | 27 | 9.581099 | TTCTTTGCTTTTTATTTCTTCGTTCTT | 57.419 | 25.926 | 0.00 | 0.00 | 0.00 | 2.52 |
27 | 28 | 9.237846 | CTTCTTTGCTTTTTATTTCTTCGTTCT | 57.762 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
28 | 29 | 9.233232 | TCTTCTTTGCTTTTTATTTCTTCGTTC | 57.767 | 29.630 | 0.00 | 0.00 | 0.00 | 3.95 |
29 | 30 | 9.237846 | CTCTTCTTTGCTTTTTATTTCTTCGTT | 57.762 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
30 | 31 | 8.621286 | TCTCTTCTTTGCTTTTTATTTCTTCGT | 58.379 | 29.630 | 0.00 | 0.00 | 0.00 | 3.85 |
31 | 32 | 9.450807 | TTCTCTTCTTTGCTTTTTATTTCTTCG | 57.549 | 29.630 | 0.00 | 0.00 | 0.00 | 3.79 |
34 | 35 | 9.755804 | CCTTTCTCTTCTTTGCTTTTTATTTCT | 57.244 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
35 | 36 | 9.750125 | TCCTTTCTCTTCTTTGCTTTTTATTTC | 57.250 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
39 | 40 | 9.936759 | TTTTTCCTTTCTCTTCTTTGCTTTTTA | 57.063 | 25.926 | 0.00 | 0.00 | 0.00 | 1.52 |
40 | 41 | 8.846943 | TTTTTCCTTTCTCTTCTTTGCTTTTT | 57.153 | 26.923 | 0.00 | 0.00 | 0.00 | 1.94 |
81 | 82 | 9.702494 | CTTCTGCCATCTTTTATTCTTTCTTTT | 57.298 | 29.630 | 0.00 | 0.00 | 0.00 | 2.27 |
82 | 83 | 7.816513 | GCTTCTGCCATCTTTTATTCTTTCTTT | 59.183 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
83 | 84 | 7.178097 | AGCTTCTGCCATCTTTTATTCTTTCTT | 59.822 | 33.333 | 0.00 | 0.00 | 40.80 | 2.52 |
84 | 85 | 6.662663 | AGCTTCTGCCATCTTTTATTCTTTCT | 59.337 | 34.615 | 0.00 | 0.00 | 40.80 | 2.52 |
85 | 86 | 6.861144 | AGCTTCTGCCATCTTTTATTCTTTC | 58.139 | 36.000 | 0.00 | 0.00 | 40.80 | 2.62 |
86 | 87 | 6.847421 | AGCTTCTGCCATCTTTTATTCTTT | 57.153 | 33.333 | 0.00 | 0.00 | 40.80 | 2.52 |
87 | 88 | 9.632638 | TTATAGCTTCTGCCATCTTTTATTCTT | 57.367 | 29.630 | 0.00 | 0.00 | 40.80 | 2.52 |
88 | 89 | 9.282569 | CTTATAGCTTCTGCCATCTTTTATTCT | 57.717 | 33.333 | 0.00 | 0.00 | 40.80 | 2.40 |
89 | 90 | 9.061435 | ACTTATAGCTTCTGCCATCTTTTATTC | 57.939 | 33.333 | 0.00 | 0.00 | 40.80 | 1.75 |
90 | 91 | 8.844244 | CACTTATAGCTTCTGCCATCTTTTATT | 58.156 | 33.333 | 0.00 | 0.00 | 40.80 | 1.40 |
91 | 92 | 8.213679 | TCACTTATAGCTTCTGCCATCTTTTAT | 58.786 | 33.333 | 0.00 | 0.00 | 40.80 | 1.40 |
92 | 93 | 7.564793 | TCACTTATAGCTTCTGCCATCTTTTA | 58.435 | 34.615 | 0.00 | 0.00 | 40.80 | 1.52 |
93 | 94 | 6.418101 | TCACTTATAGCTTCTGCCATCTTTT | 58.582 | 36.000 | 0.00 | 0.00 | 40.80 | 2.27 |
94 | 95 | 5.994250 | TCACTTATAGCTTCTGCCATCTTT | 58.006 | 37.500 | 0.00 | 0.00 | 40.80 | 2.52 |
95 | 96 | 5.620738 | TCACTTATAGCTTCTGCCATCTT | 57.379 | 39.130 | 0.00 | 0.00 | 40.80 | 2.40 |
96 | 97 | 5.363939 | GTTCACTTATAGCTTCTGCCATCT | 58.636 | 41.667 | 0.00 | 0.00 | 40.80 | 2.90 |
97 | 98 | 4.210120 | CGTTCACTTATAGCTTCTGCCATC | 59.790 | 45.833 | 0.00 | 0.00 | 40.80 | 3.51 |
98 | 99 | 4.122776 | CGTTCACTTATAGCTTCTGCCAT | 58.877 | 43.478 | 0.00 | 0.00 | 40.80 | 4.40 |
99 | 100 | 3.521560 | CGTTCACTTATAGCTTCTGCCA | 58.478 | 45.455 | 0.00 | 0.00 | 40.80 | 4.92 |
100 | 101 | 2.285488 | GCGTTCACTTATAGCTTCTGCC | 59.715 | 50.000 | 0.00 | 0.00 | 40.80 | 4.85 |
101 | 102 | 2.930040 | TGCGTTCACTTATAGCTTCTGC | 59.070 | 45.455 | 0.00 | 0.00 | 40.05 | 4.26 |
102 | 103 | 5.530519 | TTTGCGTTCACTTATAGCTTCTG | 57.469 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
103 | 104 | 5.122396 | CCTTTTGCGTTCACTTATAGCTTCT | 59.878 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
104 | 105 | 5.324697 | CCTTTTGCGTTCACTTATAGCTTC | 58.675 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
105 | 106 | 4.156008 | CCCTTTTGCGTTCACTTATAGCTT | 59.844 | 41.667 | 0.00 | 0.00 | 0.00 | 3.74 |
106 | 107 | 3.689649 | CCCTTTTGCGTTCACTTATAGCT | 59.310 | 43.478 | 0.00 | 0.00 | 0.00 | 3.32 |
107 | 108 | 3.687698 | TCCCTTTTGCGTTCACTTATAGC | 59.312 | 43.478 | 0.00 | 0.00 | 0.00 | 2.97 |
108 | 109 | 5.411669 | ACTTCCCTTTTGCGTTCACTTATAG | 59.588 | 40.000 | 0.00 | 0.00 | 0.00 | 1.31 |
109 | 110 | 5.310451 | ACTTCCCTTTTGCGTTCACTTATA | 58.690 | 37.500 | 0.00 | 0.00 | 0.00 | 0.98 |
110 | 111 | 4.142038 | ACTTCCCTTTTGCGTTCACTTAT | 58.858 | 39.130 | 0.00 | 0.00 | 0.00 | 1.73 |
111 | 112 | 3.547746 | ACTTCCCTTTTGCGTTCACTTA | 58.452 | 40.909 | 0.00 | 0.00 | 0.00 | 2.24 |
112 | 113 | 2.375146 | ACTTCCCTTTTGCGTTCACTT | 58.625 | 42.857 | 0.00 | 0.00 | 0.00 | 3.16 |
113 | 114 | 2.052782 | ACTTCCCTTTTGCGTTCACT | 57.947 | 45.000 | 0.00 | 0.00 | 0.00 | 3.41 |
114 | 115 | 2.459934 | CAACTTCCCTTTTGCGTTCAC | 58.540 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
115 | 116 | 1.407258 | CCAACTTCCCTTTTGCGTTCA | 59.593 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
116 | 117 | 1.868109 | GCCAACTTCCCTTTTGCGTTC | 60.868 | 52.381 | 0.00 | 0.00 | 0.00 | 3.95 |
117 | 118 | 0.104120 | GCCAACTTCCCTTTTGCGTT | 59.896 | 50.000 | 0.00 | 0.00 | 0.00 | 4.84 |
118 | 119 | 1.040339 | TGCCAACTTCCCTTTTGCGT | 61.040 | 50.000 | 0.00 | 0.00 | 0.00 | 5.24 |
119 | 120 | 0.318955 | CTGCCAACTTCCCTTTTGCG | 60.319 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
120 | 121 | 0.033920 | CCTGCCAACTTCCCTTTTGC | 59.966 | 55.000 | 0.00 | 0.00 | 0.00 | 3.68 |
121 | 122 | 0.681175 | CCCTGCCAACTTCCCTTTTG | 59.319 | 55.000 | 0.00 | 0.00 | 0.00 | 2.44 |
122 | 123 | 0.264657 | ACCCTGCCAACTTCCCTTTT | 59.735 | 50.000 | 0.00 | 0.00 | 0.00 | 2.27 |
123 | 124 | 0.469892 | CACCCTGCCAACTTCCCTTT | 60.470 | 55.000 | 0.00 | 0.00 | 0.00 | 3.11 |
124 | 125 | 1.153756 | CACCCTGCCAACTTCCCTT | 59.846 | 57.895 | 0.00 | 0.00 | 0.00 | 3.95 |
125 | 126 | 2.845345 | CCACCCTGCCAACTTCCCT | 61.845 | 63.158 | 0.00 | 0.00 | 0.00 | 4.20 |
126 | 127 | 2.283173 | CCACCCTGCCAACTTCCC | 60.283 | 66.667 | 0.00 | 0.00 | 0.00 | 3.97 |
127 | 128 | 2.137177 | TAGCCACCCTGCCAACTTCC | 62.137 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
128 | 129 | 0.678048 | CTAGCCACCCTGCCAACTTC | 60.678 | 60.000 | 0.00 | 0.00 | 0.00 | 3.01 |
129 | 130 | 1.380302 | CTAGCCACCCTGCCAACTT | 59.620 | 57.895 | 0.00 | 0.00 | 0.00 | 2.66 |
130 | 131 | 3.081554 | CTAGCCACCCTGCCAACT | 58.918 | 61.111 | 0.00 | 0.00 | 0.00 | 3.16 |
131 | 132 | 2.751837 | GCTAGCCACCCTGCCAAC | 60.752 | 66.667 | 2.29 | 0.00 | 0.00 | 3.77 |
132 | 133 | 2.935481 | AGCTAGCCACCCTGCCAA | 60.935 | 61.111 | 12.13 | 0.00 | 0.00 | 4.52 |
133 | 134 | 3.402681 | GAGCTAGCCACCCTGCCA | 61.403 | 66.667 | 12.13 | 0.00 | 0.00 | 4.92 |
134 | 135 | 4.537433 | CGAGCTAGCCACCCTGCC | 62.537 | 72.222 | 12.13 | 0.00 | 0.00 | 4.85 |
135 | 136 | 4.537433 | CCGAGCTAGCCACCCTGC | 62.537 | 72.222 | 12.13 | 0.00 | 0.00 | 4.85 |
136 | 137 | 3.854669 | CCCGAGCTAGCCACCCTG | 61.855 | 72.222 | 12.13 | 0.00 | 0.00 | 4.45 |
137 | 138 | 3.925914 | AACCCGAGCTAGCCACCCT | 62.926 | 63.158 | 12.13 | 0.00 | 0.00 | 4.34 |
138 | 139 | 2.871216 | GAAACCCGAGCTAGCCACCC | 62.871 | 65.000 | 12.13 | 0.00 | 0.00 | 4.61 |
139 | 140 | 1.449778 | GAAACCCGAGCTAGCCACC | 60.450 | 63.158 | 12.13 | 0.00 | 0.00 | 4.61 |
140 | 141 | 0.741221 | CTGAAACCCGAGCTAGCCAC | 60.741 | 60.000 | 12.13 | 5.22 | 0.00 | 5.01 |
141 | 142 | 1.192146 | ACTGAAACCCGAGCTAGCCA | 61.192 | 55.000 | 12.13 | 0.00 | 0.00 | 4.75 |
142 | 143 | 0.460459 | GACTGAAACCCGAGCTAGCC | 60.460 | 60.000 | 12.13 | 1.79 | 0.00 | 3.93 |
143 | 144 | 0.246635 | TGACTGAAACCCGAGCTAGC | 59.753 | 55.000 | 6.62 | 6.62 | 0.00 | 3.42 |
144 | 145 | 2.611518 | CTTGACTGAAACCCGAGCTAG | 58.388 | 52.381 | 0.00 | 0.00 | 0.00 | 3.42 |
145 | 146 | 1.337823 | GCTTGACTGAAACCCGAGCTA | 60.338 | 52.381 | 0.00 | 0.00 | 35.12 | 3.32 |
146 | 147 | 0.603975 | GCTTGACTGAAACCCGAGCT | 60.604 | 55.000 | 0.00 | 0.00 | 35.12 | 4.09 |
147 | 148 | 1.578206 | GGCTTGACTGAAACCCGAGC | 61.578 | 60.000 | 0.00 | 0.00 | 36.77 | 5.03 |
148 | 149 | 0.955919 | GGGCTTGACTGAAACCCGAG | 60.956 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
149 | 150 | 1.072505 | GGGCTTGACTGAAACCCGA | 59.927 | 57.895 | 0.00 | 0.00 | 0.00 | 5.14 |
150 | 151 | 3.668386 | GGGCTTGACTGAAACCCG | 58.332 | 61.111 | 0.00 | 0.00 | 0.00 | 5.28 |
151 | 152 | 2.626780 | GCGGGCTTGACTGAAACCC | 61.627 | 63.158 | 0.00 | 0.00 | 37.19 | 4.11 |
152 | 153 | 2.954611 | GCGGGCTTGACTGAAACC | 59.045 | 61.111 | 0.00 | 0.00 | 0.00 | 3.27 |
153 | 154 | 2.556287 | CGCGGGCTTGACTGAAAC | 59.444 | 61.111 | 0.00 | 0.00 | 0.00 | 2.78 |
154 | 155 | 2.668212 | CCGCGGGCTTGACTGAAA | 60.668 | 61.111 | 20.10 | 0.00 | 0.00 | 2.69 |
155 | 156 | 3.936203 | ACCGCGGGCTTGACTGAA | 61.936 | 61.111 | 31.76 | 0.00 | 0.00 | 3.02 |
156 | 157 | 4.680237 | CACCGCGGGCTTGACTGA | 62.680 | 66.667 | 31.76 | 0.00 | 0.00 | 3.41 |
168 | 169 | 2.097728 | GATTCGAAACCGCACCGC | 59.902 | 61.111 | 0.00 | 0.00 | 0.00 | 5.68 |
169 | 170 | 1.296056 | AAGGATTCGAAACCGCACCG | 61.296 | 55.000 | 17.66 | 0.00 | 0.00 | 4.94 |
170 | 171 | 0.168128 | CAAGGATTCGAAACCGCACC | 59.832 | 55.000 | 17.66 | 7.56 | 0.00 | 5.01 |
171 | 172 | 0.872388 | ACAAGGATTCGAAACCGCAC | 59.128 | 50.000 | 17.66 | 0.00 | 0.00 | 5.34 |
172 | 173 | 1.153353 | GACAAGGATTCGAAACCGCA | 58.847 | 50.000 | 17.66 | 0.00 | 0.00 | 5.69 |
173 | 174 | 1.128692 | CTGACAAGGATTCGAAACCGC | 59.871 | 52.381 | 17.66 | 9.91 | 0.00 | 5.68 |
174 | 175 | 1.128692 | GCTGACAAGGATTCGAAACCG | 59.871 | 52.381 | 17.66 | 8.11 | 0.00 | 4.44 |
175 | 176 | 2.416893 | GAGCTGACAAGGATTCGAAACC | 59.583 | 50.000 | 16.19 | 16.19 | 0.00 | 3.27 |
176 | 177 | 3.330267 | AGAGCTGACAAGGATTCGAAAC | 58.670 | 45.455 | 0.00 | 0.00 | 0.00 | 2.78 |
177 | 178 | 3.589988 | GAGAGCTGACAAGGATTCGAAA | 58.410 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
178 | 179 | 2.093973 | GGAGAGCTGACAAGGATTCGAA | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
179 | 180 | 1.478510 | GGAGAGCTGACAAGGATTCGA | 59.521 | 52.381 | 0.00 | 0.00 | 0.00 | 3.71 |
180 | 181 | 1.480137 | AGGAGAGCTGACAAGGATTCG | 59.520 | 52.381 | 0.00 | 0.00 | 0.00 | 3.34 |
181 | 182 | 3.625649 | AAGGAGAGCTGACAAGGATTC | 57.374 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
182 | 183 | 4.379302 | AAAAGGAGAGCTGACAAGGATT | 57.621 | 40.909 | 0.00 | 0.00 | 0.00 | 3.01 |
183 | 184 | 4.379302 | AAAAAGGAGAGCTGACAAGGAT | 57.621 | 40.909 | 0.00 | 0.00 | 0.00 | 3.24 |
184 | 185 | 3.864789 | AAAAAGGAGAGCTGACAAGGA | 57.135 | 42.857 | 0.00 | 0.00 | 0.00 | 3.36 |
201 | 202 | 2.223618 | GCTCTGTAAACCGGTGCAAAAA | 60.224 | 45.455 | 8.52 | 0.00 | 38.53 | 1.94 |
202 | 203 | 1.335496 | GCTCTGTAAACCGGTGCAAAA | 59.665 | 47.619 | 8.52 | 0.00 | 38.53 | 2.44 |
203 | 204 | 0.948678 | GCTCTGTAAACCGGTGCAAA | 59.051 | 50.000 | 8.52 | 0.00 | 38.53 | 3.68 |
204 | 205 | 0.107831 | AGCTCTGTAAACCGGTGCAA | 59.892 | 50.000 | 8.52 | 0.00 | 40.62 | 4.08 |
205 | 206 | 0.320421 | GAGCTCTGTAAACCGGTGCA | 60.320 | 55.000 | 8.52 | 7.27 | 40.62 | 4.57 |
206 | 207 | 0.037232 | AGAGCTCTGTAAACCGGTGC | 60.037 | 55.000 | 17.42 | 5.02 | 38.87 | 5.01 |
207 | 208 | 1.732732 | CGAGAGCTCTGTAAACCGGTG | 60.733 | 57.143 | 23.91 | 0.00 | 0.00 | 4.94 |
208 | 209 | 0.526662 | CGAGAGCTCTGTAAACCGGT | 59.473 | 55.000 | 23.91 | 0.00 | 0.00 | 5.28 |
209 | 210 | 0.526662 | ACGAGAGCTCTGTAAACCGG | 59.473 | 55.000 | 23.91 | 0.00 | 0.00 | 5.28 |
210 | 211 | 1.790838 | CGACGAGAGCTCTGTAAACCG | 60.791 | 57.143 | 23.91 | 19.22 | 0.00 | 4.44 |
211 | 212 | 1.467713 | CCGACGAGAGCTCTGTAAACC | 60.468 | 57.143 | 23.91 | 4.15 | 0.00 | 3.27 |
212 | 213 | 1.199558 | ACCGACGAGAGCTCTGTAAAC | 59.800 | 52.381 | 23.91 | 4.98 | 0.00 | 2.01 |
213 | 214 | 1.467734 | GACCGACGAGAGCTCTGTAAA | 59.532 | 52.381 | 23.91 | 0.00 | 0.00 | 2.01 |
214 | 215 | 1.085091 | GACCGACGAGAGCTCTGTAA | 58.915 | 55.000 | 23.91 | 0.00 | 0.00 | 2.41 |
215 | 216 | 0.743701 | GGACCGACGAGAGCTCTGTA | 60.744 | 60.000 | 23.91 | 0.00 | 0.00 | 2.74 |
216 | 217 | 2.041686 | GGACCGACGAGAGCTCTGT | 61.042 | 63.158 | 23.91 | 18.93 | 0.00 | 3.41 |
217 | 218 | 2.766400 | GGGACCGACGAGAGCTCTG | 61.766 | 68.421 | 23.91 | 15.72 | 0.00 | 3.35 |
218 | 219 | 2.438795 | GGGACCGACGAGAGCTCT | 60.439 | 66.667 | 18.28 | 18.28 | 0.00 | 4.09 |
219 | 220 | 3.878519 | CGGGACCGACGAGAGCTC | 61.879 | 72.222 | 5.27 | 5.27 | 42.83 | 4.09 |
298 | 301 | 0.751277 | TGTGTGTGGTCTTTGGGCTG | 60.751 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
318 | 321 | 6.386927 | TCTTTCTATATGGGGCTTTTCTCTGA | 59.613 | 38.462 | 0.00 | 0.00 | 0.00 | 3.27 |
329 | 332 | 8.299570 | GCACAAATAATGTCTTTCTATATGGGG | 58.700 | 37.037 | 0.00 | 0.00 | 41.46 | 4.96 |
717 | 737 | 3.311110 | GGTCGGTGGTGCTGGAGA | 61.311 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
742 | 762 | 3.918253 | GACCATGGGGCGCTGTTCA | 62.918 | 63.158 | 18.09 | 0.80 | 37.90 | 3.18 |
1078 | 1105 | 2.158971 | GCAGGAACTCTCCATTCTCCTC | 60.159 | 54.545 | 0.00 | 0.00 | 45.24 | 3.71 |
1240 | 1270 | 2.042162 | AGAGGATGCCATTCCACAAGTT | 59.958 | 45.455 | 0.89 | 0.00 | 38.32 | 2.66 |
1336 | 1369 | 2.611971 | GCAACCGGTAGTTCATGTCTGA | 60.612 | 50.000 | 8.00 | 0.00 | 36.18 | 3.27 |
1463 | 1505 | 0.321919 | ACTCGTAGCCGTAGTGGTCA | 60.322 | 55.000 | 0.00 | 0.00 | 41.21 | 4.02 |
1868 | 1920 | 4.445385 | GCTGCACAACACAAAATTAAGAGG | 59.555 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
1890 | 1942 | 5.522824 | CGGACCAAGGAAGTAGTTAATTAGC | 59.477 | 44.000 | 0.00 | 0.00 | 0.00 | 3.09 |
1906 | 1958 | 3.365969 | GCAACAAGTAATTCCGGACCAAG | 60.366 | 47.826 | 1.83 | 0.00 | 0.00 | 3.61 |
1971 | 2023 | 3.185594 | CGGAATTACTTGACGCTCAAACA | 59.814 | 43.478 | 2.82 | 0.00 | 35.73 | 2.83 |
1994 | 2046 | 0.994247 | TACAGGTGTACTCCCTCCGA | 59.006 | 55.000 | 10.36 | 0.00 | 0.00 | 4.55 |
2012 | 2065 | 7.417342 | GCCCTAATTATCTTGGTTTGTGCATTA | 60.417 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
2037 | 2090 | 2.048603 | GGTGGAGCATTGGGACTGC | 61.049 | 63.158 | 0.00 | 0.00 | 39.97 | 4.40 |
2254 | 2308 | 5.671742 | AAACAACAATTGCACCAATTAGC | 57.328 | 34.783 | 5.05 | 0.00 | 41.40 | 3.09 |
2255 | 2309 | 9.596677 | CAATAAAACAACAATTGCACCAATTAG | 57.403 | 29.630 | 5.05 | 2.13 | 41.40 | 1.73 |
2257 | 2311 | 7.994194 | ACAATAAAACAACAATTGCACCAATT | 58.006 | 26.923 | 5.05 | 0.00 | 43.71 | 2.32 |
2258 | 2312 | 7.565323 | ACAATAAAACAACAATTGCACCAAT | 57.435 | 28.000 | 5.05 | 0.00 | 35.39 | 3.16 |
2269 | 2323 | 9.522804 | GTCCAACAGAATTACAATAAAACAACA | 57.477 | 29.630 | 0.00 | 0.00 | 0.00 | 3.33 |
2270 | 2324 | 9.744468 | AGTCCAACAGAATTACAATAAAACAAC | 57.256 | 29.630 | 0.00 | 0.00 | 0.00 | 3.32 |
2272 | 2326 | 9.743057 | CAAGTCCAACAGAATTACAATAAAACA | 57.257 | 29.630 | 0.00 | 0.00 | 29.99 | 2.83 |
2273 | 2327 | 9.959749 | TCAAGTCCAACAGAATTACAATAAAAC | 57.040 | 29.630 | 0.00 | 0.00 | 29.99 | 2.43 |
2277 | 2331 | 9.513906 | TCAATCAAGTCCAACAGAATTACAATA | 57.486 | 29.630 | 0.00 | 0.00 | 29.99 | 1.90 |
2278 | 2332 | 8.408043 | TCAATCAAGTCCAACAGAATTACAAT | 57.592 | 30.769 | 0.00 | 0.00 | 29.99 | 2.71 |
2379 | 2433 | 2.290093 | GCTGCTTCTTGTGAGGATATGC | 59.710 | 50.000 | 0.00 | 0.00 | 0.00 | 3.14 |
2441 | 2501 | 4.899239 | GGAGCTCCCATGGCGTCG | 62.899 | 72.222 | 23.19 | 0.00 | 34.14 | 5.12 |
2485 | 2545 | 9.031360 | TCGATGTTAAACTTAATCAGACATAGC | 57.969 | 33.333 | 0.00 | 0.00 | 0.00 | 2.97 |
2570 | 2630 | 4.633565 | GTCTTCTTCCTGACCAATCATCAC | 59.366 | 45.833 | 0.00 | 0.00 | 33.22 | 3.06 |
2627 | 2687 | 5.192927 | TGATTTATCCAGAAACGAGGCAAT | 58.807 | 37.500 | 0.00 | 0.00 | 0.00 | 3.56 |
2698 | 2758 | 5.006844 | AGTGATCGTCTCATGTACTACGAAG | 59.993 | 44.000 | 14.76 | 0.00 | 46.18 | 3.79 |
2779 | 2839 | 2.426522 | CATGGACACGACCAAGACATT | 58.573 | 47.619 | 0.00 | 0.00 | 43.47 | 2.71 |
2790 | 2850 | 4.838152 | CCTCGGGCCATGGACACG | 62.838 | 72.222 | 22.13 | 21.15 | 0.00 | 4.49 |
2916 | 2976 | 5.051816 | TCGACGAAAATAAAGCCGGATTAT | 58.948 | 37.500 | 4.83 | 6.23 | 0.00 | 1.28 |
2937 | 2997 | 9.113876 | GTTAAAAACAAAGTCCATCACTAATCG | 57.886 | 33.333 | 0.00 | 0.00 | 32.30 | 3.34 |
3015 | 3076 | 4.223320 | ACAACACACAATTAGAAAGGCG | 57.777 | 40.909 | 0.00 | 0.00 | 0.00 | 5.52 |
3095 | 4143 | 3.424487 | TGCGTCATGTTTTGCGATAATG | 58.576 | 40.909 | 0.00 | 0.00 | 0.00 | 1.90 |
3096 | 4144 | 3.755965 | TGCGTCATGTTTTGCGATAAT | 57.244 | 38.095 | 0.00 | 0.00 | 0.00 | 1.28 |
3146 | 4194 | 8.662141 | GTTTGCGGAGATAGTTAACAAATTCTA | 58.338 | 33.333 | 8.61 | 0.00 | 0.00 | 2.10 |
3209 | 4257 | 4.804868 | TGCAATGCAATGGTCAAGTTAT | 57.195 | 36.364 | 5.01 | 0.00 | 34.76 | 1.89 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.