Multiple sequence alignment - TraesCS7B01G254000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G254000 chr7B 100.000 4093 0 0 1 4093 468121683 468125775 0.000000e+00 7559.0
1 TraesCS7B01G254000 chr7B 98.548 620 5 3 3474 4093 324327131 324326516 0.000000e+00 1092.0
2 TraesCS7B01G254000 chr7B 100.000 31 0 0 383 413 187595872 187595842 1.590000e-04 58.4
3 TraesCS7B01G254000 chr7D 93.043 2889 99 37 524 3362 449773588 449776424 0.000000e+00 4128.0
4 TraesCS7B01G254000 chr7D 92.308 390 21 3 1131 1511 103193798 103193409 2.780000e-151 545.0
5 TraesCS7B01G254000 chr7D 95.327 107 5 0 3368 3474 449776458 449776564 1.960000e-38 171.0
6 TraesCS7B01G254000 chr7D 95.000 60 3 0 1503 1562 103192743 103192684 1.210000e-15 95.3
7 TraesCS7B01G254000 chr1A 98.873 621 5 2 3473 4093 462847185 462846567 0.000000e+00 1107.0
8 TraesCS7B01G254000 chr1A 98.555 623 4 3 3474 4093 495294549 495293929 0.000000e+00 1096.0
9 TraesCS7B01G254000 chr1B 98.714 622 5 3 3473 4093 39270334 39270953 0.000000e+00 1101.0
10 TraesCS7B01G254000 chr1B 98.400 625 3 3 3474 4093 39278404 39279026 0.000000e+00 1092.0
11 TraesCS7B01G254000 chr1B 88.770 187 21 0 2506 2692 664287052 664287238 3.180000e-56 230.0
12 TraesCS7B01G254000 chr1B 94.872 39 1 1 383 420 488675571 488675533 4.420000e-05 60.2
13 TraesCS7B01G254000 chr4A 98.712 621 5 3 3474 4093 122972356 122971738 0.000000e+00 1099.0
14 TraesCS7B01G254000 chr4A 98.710 620 3 3 3474 4093 122980369 122979755 0.000000e+00 1096.0
15 TraesCS7B01G254000 chr4A 100.000 37 0 0 378 414 15815527 15815563 7.340000e-08 69.4
16 TraesCS7B01G254000 chr4A 100.000 30 0 0 385 414 370262732 370262761 5.720000e-04 56.5
17 TraesCS7B01G254000 chr5B 98.397 624 6 3 3471 4093 358556782 358556162 0.000000e+00 1094.0
18 TraesCS7B01G254000 chr3A 98.392 622 6 3 3474 4093 652663769 652663150 0.000000e+00 1090.0
19 TraesCS7B01G254000 chr3A 88.908 577 48 7 998 1559 502781171 502781746 0.000000e+00 697.0
20 TraesCS7B01G254000 chr3A 91.489 188 15 1 1321 1507 668027440 668027253 1.460000e-64 257.0
21 TraesCS7B01G254000 chr3A 90.805 87 6 2 997 1082 668027541 668027456 9.300000e-22 115.0
22 TraesCS7B01G254000 chr6D 92.222 360 22 4 2428 2787 367176101 367176454 4.720000e-139 505.0
23 TraesCS7B01G254000 chr6D 90.572 297 28 0 1862 2158 367175791 367176087 1.070000e-105 394.0
24 TraesCS7B01G254000 chr6D 93.478 92 6 0 2278 2369 223691169 223691260 1.980000e-28 137.0
25 TraesCS7B01G254000 chr5A 92.542 295 22 0 1862 2156 258723360 258723654 1.360000e-114 424.0
26 TraesCS7B01G254000 chr5A 94.942 257 13 0 2428 2684 258723669 258723925 1.770000e-108 403.0
27 TraesCS7B01G254000 chr2B 91.273 275 22 2 1286 1559 765130690 765130417 1.390000e-99 374.0
28 TraesCS7B01G254000 chr2B 97.222 36 0 1 378 413 29717045 29717079 4.420000e-05 60.2
29 TraesCS7B01G254000 chr7A 82.911 316 33 9 2211 2512 33834300 33834608 8.720000e-67 265.0
30 TraesCS7B01G254000 chr7A 100.000 32 0 0 383 414 189354464 189354495 4.420000e-05 60.2
31 TraesCS7B01G254000 chr6A 90.957 188 16 1 1321 1507 577803489 577803302 6.790000e-63 252.0
32 TraesCS7B01G254000 chr6A 90.588 85 6 2 998 1081 577803589 577803506 1.200000e-20 111.0
33 TraesCS7B01G254000 chr2D 100.000 37 0 0 378 414 453627070 453627034 7.340000e-08 69.4
34 TraesCS7B01G254000 chr2D 97.222 36 1 0 378 413 603827253 603827288 1.230000e-05 62.1
35 TraesCS7B01G254000 chr2D 94.737 38 1 1 377 413 647496840 647496877 1.590000e-04 58.4
36 TraesCS7B01G254000 chr2D 100.000 30 0 0 384 413 30331138 30331109 5.720000e-04 56.5
37 TraesCS7B01G254000 chr4B 97.368 38 0 1 378 415 478578430 478578466 3.420000e-06 63.9
38 TraesCS7B01G254000 chr6B 90.909 44 2 2 383 426 609364038 609363997 1.590000e-04 58.4
39 TraesCS7B01G254000 chr4D 100.000 28 0 0 386 413 226253822 226253795 7.000000e-03 52.8
40 TraesCS7B01G254000 chr3D 96.774 31 1 0 383 413 22076246 22076276 7.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G254000 chr7B 468121683 468125775 4092 False 7559.00 7559 100.000 1 4093 1 chr7B.!!$F1 4092
1 TraesCS7B01G254000 chr7B 324326516 324327131 615 True 1092.00 1092 98.548 3474 4093 1 chr7B.!!$R2 619
2 TraesCS7B01G254000 chr7D 449773588 449776564 2976 False 2149.50 4128 94.185 524 3474 2 chr7D.!!$F1 2950
3 TraesCS7B01G254000 chr7D 103192684 103193798 1114 True 320.15 545 93.654 1131 1562 2 chr7D.!!$R1 431
4 TraesCS7B01G254000 chr1A 462846567 462847185 618 True 1107.00 1107 98.873 3473 4093 1 chr1A.!!$R1 620
5 TraesCS7B01G254000 chr1A 495293929 495294549 620 True 1096.00 1096 98.555 3474 4093 1 chr1A.!!$R2 619
6 TraesCS7B01G254000 chr1B 39270334 39270953 619 False 1101.00 1101 98.714 3473 4093 1 chr1B.!!$F1 620
7 TraesCS7B01G254000 chr1B 39278404 39279026 622 False 1092.00 1092 98.400 3474 4093 1 chr1B.!!$F2 619
8 TraesCS7B01G254000 chr4A 122971738 122972356 618 True 1099.00 1099 98.712 3474 4093 1 chr4A.!!$R1 619
9 TraesCS7B01G254000 chr4A 122979755 122980369 614 True 1096.00 1096 98.710 3474 4093 1 chr4A.!!$R2 619
10 TraesCS7B01G254000 chr5B 358556162 358556782 620 True 1094.00 1094 98.397 3471 4093 1 chr5B.!!$R1 622
11 TraesCS7B01G254000 chr3A 652663150 652663769 619 True 1090.00 1090 98.392 3474 4093 1 chr3A.!!$R1 619
12 TraesCS7B01G254000 chr3A 502781171 502781746 575 False 697.00 697 88.908 998 1559 1 chr3A.!!$F1 561
13 TraesCS7B01G254000 chr6D 367175791 367176454 663 False 449.50 505 91.397 1862 2787 2 chr6D.!!$F2 925
14 TraesCS7B01G254000 chr5A 258723360 258723925 565 False 413.50 424 93.742 1862 2684 2 chr5A.!!$F1 822

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 407 0.036164 TAGCAACACACGGGCATTCT 59.964 50.0 0.0 0.0 0.00 2.40 F
407 408 0.036164 AGCAACACACGGGCATTCTA 59.964 50.0 0.0 0.0 0.00 2.10 F
1512 2248 0.036294 GGTTCTACTGCTGGGACACC 60.036 60.0 0.0 0.0 37.24 4.16 F
1772 2517 0.109597 GCAGGCCTTGTTTGTCGATG 60.110 55.0 0.0 0.0 0.00 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 2407 0.604578 CCCCATCAACTTTGCAGGTG 59.395 55.000 0.0 0.0 39.39 4.00 R
1939 2684 1.376683 GCACATGGCTCACCCGTTA 60.377 57.895 0.0 0.0 40.25 3.18 R
2823 3571 0.745845 GAGCGTCATGTCCCTGCAAT 60.746 55.000 0.0 0.0 0.00 3.56 R
3272 4020 2.031258 TCGGTTTTGACAAGCACTCA 57.969 45.000 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.939509 GATTTTACCGTGTGCATGTACT 57.060 40.909 15.25 0.00 0.00 2.73
22 23 5.291293 GATTTTACCGTGTGCATGTACTT 57.709 39.130 15.25 0.05 0.00 2.24
23 24 4.735662 TTTTACCGTGTGCATGTACTTC 57.264 40.909 15.25 7.42 0.00 3.01
24 25 3.388345 TTACCGTGTGCATGTACTTCA 57.612 42.857 15.25 0.00 0.00 3.02
25 26 2.472695 ACCGTGTGCATGTACTTCAT 57.527 45.000 15.25 0.00 37.22 2.57
37 38 6.864560 CATGTACTTCATGTTGCTGAATTG 57.135 37.500 0.00 0.00 46.18 2.32
38 39 4.797471 TGTACTTCATGTTGCTGAATTGC 58.203 39.130 0.00 0.00 34.76 3.56
39 40 4.277921 TGTACTTCATGTTGCTGAATTGCA 59.722 37.500 0.00 0.00 41.65 4.08
40 41 4.530710 ACTTCATGTTGCTGAATTGCAT 57.469 36.364 0.00 0.00 42.96 3.96
41 42 4.890088 ACTTCATGTTGCTGAATTGCATT 58.110 34.783 0.00 0.00 42.96 3.56
42 43 6.028146 ACTTCATGTTGCTGAATTGCATTA 57.972 33.333 0.00 0.00 42.96 1.90
43 44 6.097356 ACTTCATGTTGCTGAATTGCATTAG 58.903 36.000 0.00 0.00 42.96 1.73
44 45 5.648178 TCATGTTGCTGAATTGCATTAGT 57.352 34.783 0.00 0.00 42.96 2.24
45 46 6.756299 TCATGTTGCTGAATTGCATTAGTA 57.244 33.333 0.00 0.00 42.96 1.82
46 47 7.155655 TCATGTTGCTGAATTGCATTAGTAA 57.844 32.000 0.00 0.00 42.96 2.24
47 48 7.600960 TCATGTTGCTGAATTGCATTAGTAAA 58.399 30.769 0.00 0.00 42.96 2.01
48 49 7.756272 TCATGTTGCTGAATTGCATTAGTAAAG 59.244 33.333 0.00 0.00 42.96 1.85
49 50 6.980593 TGTTGCTGAATTGCATTAGTAAAGT 58.019 32.000 0.00 0.00 42.96 2.66
50 51 7.432869 TGTTGCTGAATTGCATTAGTAAAGTT 58.567 30.769 0.00 0.00 42.96 2.66
51 52 7.594758 TGTTGCTGAATTGCATTAGTAAAGTTC 59.405 33.333 0.00 0.00 42.96 3.01
52 53 6.620678 TGCTGAATTGCATTAGTAAAGTTCC 58.379 36.000 0.00 0.00 38.12 3.62
53 54 6.434028 TGCTGAATTGCATTAGTAAAGTTCCT 59.566 34.615 0.00 0.00 38.12 3.36
54 55 6.969473 GCTGAATTGCATTAGTAAAGTTCCTC 59.031 38.462 0.00 0.00 0.00 3.71
55 56 7.391148 TGAATTGCATTAGTAAAGTTCCTCC 57.609 36.000 0.00 0.00 0.00 4.30
56 57 6.945435 TGAATTGCATTAGTAAAGTTCCTCCA 59.055 34.615 0.00 0.00 0.00 3.86
57 58 7.615365 TGAATTGCATTAGTAAAGTTCCTCCAT 59.385 33.333 0.00 0.00 0.00 3.41
58 59 7.961326 ATTGCATTAGTAAAGTTCCTCCATT 57.039 32.000 0.00 0.00 0.00 3.16
59 60 6.757897 TGCATTAGTAAAGTTCCTCCATTG 57.242 37.500 0.00 0.00 0.00 2.82
60 61 6.480763 TGCATTAGTAAAGTTCCTCCATTGA 58.519 36.000 0.00 0.00 0.00 2.57
61 62 7.118723 TGCATTAGTAAAGTTCCTCCATTGAT 58.881 34.615 0.00 0.00 0.00 2.57
62 63 8.271458 TGCATTAGTAAAGTTCCTCCATTGATA 58.729 33.333 0.00 0.00 0.00 2.15
63 64 9.120538 GCATTAGTAAAGTTCCTCCATTGATAA 57.879 33.333 0.00 0.00 0.00 1.75
66 67 9.667107 TTAGTAAAGTTCCTCCATTGATAAGTG 57.333 33.333 0.00 0.00 0.00 3.16
67 68 7.112779 AGTAAAGTTCCTCCATTGATAAGTGG 58.887 38.462 0.00 0.00 36.82 4.00
68 69 3.891049 AGTTCCTCCATTGATAAGTGGC 58.109 45.455 0.00 0.00 35.43 5.01
69 70 2.952310 GTTCCTCCATTGATAAGTGGCC 59.048 50.000 0.00 0.00 35.43 5.36
70 71 2.204463 TCCTCCATTGATAAGTGGCCA 58.796 47.619 0.00 0.00 35.43 5.36
71 72 2.580322 TCCTCCATTGATAAGTGGCCAA 59.420 45.455 7.24 0.00 35.43 4.52
72 73 3.011144 TCCTCCATTGATAAGTGGCCAAA 59.989 43.478 7.24 0.00 35.43 3.28
73 74 3.962718 CCTCCATTGATAAGTGGCCAAAT 59.037 43.478 7.24 0.49 35.43 2.32
74 75 5.103728 TCCTCCATTGATAAGTGGCCAAATA 60.104 40.000 7.24 3.65 35.43 1.40
75 76 5.242393 CCTCCATTGATAAGTGGCCAAATAG 59.758 44.000 7.24 0.00 35.43 1.73
76 77 5.139727 TCCATTGATAAGTGGCCAAATAGG 58.860 41.667 7.24 7.29 41.84 2.57
77 78 4.895297 CCATTGATAAGTGGCCAAATAGGT 59.105 41.667 7.24 0.00 40.61 3.08
78 79 5.363580 CCATTGATAAGTGGCCAAATAGGTT 59.636 40.000 7.24 0.00 40.61 3.50
79 80 6.461509 CCATTGATAAGTGGCCAAATAGGTTC 60.462 42.308 7.24 0.00 40.61 3.62
80 81 5.450818 TGATAAGTGGCCAAATAGGTTCT 57.549 39.130 7.24 0.00 40.61 3.01
81 82 5.437060 TGATAAGTGGCCAAATAGGTTCTC 58.563 41.667 7.24 0.00 40.61 2.87
82 83 5.191722 TGATAAGTGGCCAAATAGGTTCTCT 59.808 40.000 7.24 0.00 40.61 3.10
83 84 6.385759 TGATAAGTGGCCAAATAGGTTCTCTA 59.614 38.462 7.24 0.00 40.61 2.43
84 85 5.514500 AAGTGGCCAAATAGGTTCTCTAA 57.486 39.130 7.24 0.00 40.61 2.10
85 86 5.514500 AGTGGCCAAATAGGTTCTCTAAA 57.486 39.130 7.24 0.00 40.61 1.85
86 87 5.254115 AGTGGCCAAATAGGTTCTCTAAAC 58.746 41.667 7.24 0.00 40.61 2.01
87 88 4.398358 GTGGCCAAATAGGTTCTCTAAACC 59.602 45.833 7.24 0.00 40.61 3.27
97 98 4.760878 GGTTCTCTAAACCTTCTGCTAGG 58.239 47.826 0.00 0.00 41.31 3.02
98 99 4.185394 GTTCTCTAAACCTTCTGCTAGGC 58.815 47.826 0.00 0.00 38.99 3.93
99 100 2.766828 TCTCTAAACCTTCTGCTAGGCC 59.233 50.000 0.00 0.00 38.99 5.19
100 101 2.769095 CTCTAAACCTTCTGCTAGGCCT 59.231 50.000 11.78 11.78 38.99 5.19
101 102 3.182152 TCTAAACCTTCTGCTAGGCCTT 58.818 45.455 12.58 0.00 38.99 4.35
102 103 2.498644 AAACCTTCTGCTAGGCCTTC 57.501 50.000 12.58 3.76 38.99 3.46
103 104 0.621082 AACCTTCTGCTAGGCCTTCC 59.379 55.000 12.58 2.32 38.99 3.46
104 105 0.252927 ACCTTCTGCTAGGCCTTCCT 60.253 55.000 12.58 0.00 46.57 3.36
105 106 0.915364 CCTTCTGCTAGGCCTTCCTT 59.085 55.000 12.58 0.00 40.66 3.36
106 107 1.407989 CCTTCTGCTAGGCCTTCCTTG 60.408 57.143 12.58 0.00 40.66 3.61
107 108 1.280421 CTTCTGCTAGGCCTTCCTTGT 59.720 52.381 12.58 0.00 40.66 3.16
108 109 0.615331 TCTGCTAGGCCTTCCTTGTG 59.385 55.000 12.58 0.00 40.66 3.33
109 110 0.615331 CTGCTAGGCCTTCCTTGTGA 59.385 55.000 12.58 0.00 40.66 3.58
110 111 1.003580 CTGCTAGGCCTTCCTTGTGAA 59.996 52.381 12.58 0.00 40.66 3.18
111 112 1.635487 TGCTAGGCCTTCCTTGTGAAT 59.365 47.619 12.58 0.00 40.66 2.57
112 113 2.019984 GCTAGGCCTTCCTTGTGAATG 58.980 52.381 12.58 0.00 40.66 2.67
113 114 2.356125 GCTAGGCCTTCCTTGTGAATGA 60.356 50.000 12.58 0.00 40.66 2.57
114 115 3.686691 GCTAGGCCTTCCTTGTGAATGAT 60.687 47.826 12.58 0.00 40.66 2.45
115 116 2.731572 AGGCCTTCCTTGTGAATGATG 58.268 47.619 0.00 0.00 40.66 3.07
116 117 1.753073 GGCCTTCCTTGTGAATGATGG 59.247 52.381 0.00 0.00 31.06 3.51
117 118 2.450476 GCCTTCCTTGTGAATGATGGT 58.550 47.619 0.00 0.00 31.06 3.55
118 119 2.165030 GCCTTCCTTGTGAATGATGGTG 59.835 50.000 0.00 0.00 31.06 4.17
119 120 3.424703 CCTTCCTTGTGAATGATGGTGT 58.575 45.455 0.00 0.00 31.06 4.16
120 121 4.588899 CCTTCCTTGTGAATGATGGTGTA 58.411 43.478 0.00 0.00 31.06 2.90
121 122 5.009631 CCTTCCTTGTGAATGATGGTGTAA 58.990 41.667 0.00 0.00 31.06 2.41
122 123 5.476599 CCTTCCTTGTGAATGATGGTGTAAA 59.523 40.000 0.00 0.00 31.06 2.01
123 124 5.957842 TCCTTGTGAATGATGGTGTAAAC 57.042 39.130 0.00 0.00 0.00 2.01
124 125 5.630121 TCCTTGTGAATGATGGTGTAAACT 58.370 37.500 0.00 0.00 0.00 2.66
125 126 5.473162 TCCTTGTGAATGATGGTGTAAACTG 59.527 40.000 0.00 0.00 0.00 3.16
126 127 5.241506 CCTTGTGAATGATGGTGTAAACTGT 59.758 40.000 0.00 0.00 0.00 3.55
127 128 6.239008 CCTTGTGAATGATGGTGTAAACTGTT 60.239 38.462 0.00 0.00 0.00 3.16
128 129 6.707440 TGTGAATGATGGTGTAAACTGTTT 57.293 33.333 10.98 10.98 0.00 2.83
129 130 6.734137 TGTGAATGATGGTGTAAACTGTTTC 58.266 36.000 9.38 2.79 0.00 2.78
130 131 6.319911 TGTGAATGATGGTGTAAACTGTTTCA 59.680 34.615 9.38 5.32 0.00 2.69
131 132 7.148000 TGTGAATGATGGTGTAAACTGTTTCAA 60.148 33.333 9.38 0.00 0.00 2.69
132 133 7.379529 GTGAATGATGGTGTAAACTGTTTCAAG 59.620 37.037 9.38 0.00 0.00 3.02
133 134 6.959639 ATGATGGTGTAAACTGTTTCAAGT 57.040 33.333 9.38 0.00 0.00 3.16
134 135 8.458573 AATGATGGTGTAAACTGTTTCAAGTA 57.541 30.769 9.38 0.00 0.00 2.24
135 136 7.490962 TGATGGTGTAAACTGTTTCAAGTAG 57.509 36.000 9.38 0.00 0.00 2.57
136 137 7.276658 TGATGGTGTAAACTGTTTCAAGTAGA 58.723 34.615 9.38 0.00 0.00 2.59
137 138 7.936847 TGATGGTGTAAACTGTTTCAAGTAGAT 59.063 33.333 9.38 0.00 0.00 1.98
138 139 9.431887 GATGGTGTAAACTGTTTCAAGTAGATA 57.568 33.333 9.38 0.00 0.00 1.98
139 140 8.597662 TGGTGTAAACTGTTTCAAGTAGATAC 57.402 34.615 9.38 0.00 0.00 2.24
140 141 8.205512 TGGTGTAAACTGTTTCAAGTAGATACA 58.794 33.333 9.38 2.57 36.11 2.29
141 142 8.493547 GGTGTAAACTGTTTCAAGTAGATACAC 58.506 37.037 9.38 13.70 40.16 2.90
142 143 9.037737 GTGTAAACTGTTTCAAGTAGATACACA 57.962 33.333 18.10 8.38 40.35 3.72
143 144 9.772973 TGTAAACTGTTTCAAGTAGATACACAT 57.227 29.630 9.38 0.00 33.98 3.21
147 148 9.944376 AACTGTTTCAAGTAGATACACATATGT 57.056 29.630 1.41 1.41 43.30 2.29
153 154 8.541899 TCAAGTAGATACACATATGTGGGTAA 57.458 34.615 33.32 19.03 46.65 2.85
154 155 8.983789 TCAAGTAGATACACATATGTGGGTAAA 58.016 33.333 33.32 16.78 46.65 2.01
155 156 9.607988 CAAGTAGATACACATATGTGGGTAAAA 57.392 33.333 33.32 15.40 46.65 1.52
157 158 9.832445 AGTAGATACACATATGTGGGTAAAAAG 57.168 33.333 33.32 10.94 46.65 2.27
158 159 9.609346 GTAGATACACATATGTGGGTAAAAAGT 57.391 33.333 33.32 15.70 46.65 2.66
189 190 4.383850 CAACAAATCACTTGGTGTTGGA 57.616 40.909 7.35 0.00 46.10 3.53
190 191 4.111916 CAACAAATCACTTGGTGTTGGAC 58.888 43.478 7.35 0.00 46.10 4.02
191 192 3.631250 ACAAATCACTTGGTGTTGGACT 58.369 40.909 0.00 0.00 39.56 3.85
192 193 3.632145 ACAAATCACTTGGTGTTGGACTC 59.368 43.478 0.00 0.00 39.56 3.36
193 194 3.576078 AATCACTTGGTGTTGGACTCA 57.424 42.857 0.00 0.00 34.79 3.41
194 195 3.795688 ATCACTTGGTGTTGGACTCAT 57.204 42.857 0.00 0.00 34.79 2.90
195 196 4.908601 ATCACTTGGTGTTGGACTCATA 57.091 40.909 0.00 0.00 34.79 2.15
196 197 4.908601 TCACTTGGTGTTGGACTCATAT 57.091 40.909 0.00 0.00 34.79 1.78
197 198 4.578871 TCACTTGGTGTTGGACTCATATG 58.421 43.478 0.00 0.00 34.79 1.78
198 199 4.041567 TCACTTGGTGTTGGACTCATATGT 59.958 41.667 1.90 0.00 34.79 2.29
199 200 5.247337 TCACTTGGTGTTGGACTCATATGTA 59.753 40.000 1.90 0.00 34.79 2.29
200 201 5.937540 CACTTGGTGTTGGACTCATATGTAA 59.062 40.000 1.90 0.00 0.00 2.41
201 202 6.599244 CACTTGGTGTTGGACTCATATGTAAT 59.401 38.462 1.90 0.00 0.00 1.89
202 203 7.121168 CACTTGGTGTTGGACTCATATGTAATT 59.879 37.037 1.90 0.00 0.00 1.40
203 204 7.669722 ACTTGGTGTTGGACTCATATGTAATTT 59.330 33.333 1.90 0.00 0.00 1.82
204 205 8.415950 TTGGTGTTGGACTCATATGTAATTTT 57.584 30.769 1.90 0.00 0.00 1.82
205 206 8.415950 TGGTGTTGGACTCATATGTAATTTTT 57.584 30.769 1.90 0.00 0.00 1.94
206 207 9.521841 TGGTGTTGGACTCATATGTAATTTTTA 57.478 29.630 1.90 0.00 0.00 1.52
210 211 9.965824 GTTGGACTCATATGTAATTTTTATGGG 57.034 33.333 1.90 0.00 31.46 4.00
211 212 8.177119 TGGACTCATATGTAATTTTTATGGGC 57.823 34.615 1.90 0.00 28.70 5.36
212 213 7.782168 TGGACTCATATGTAATTTTTATGGGCA 59.218 33.333 1.90 0.00 28.70 5.36
213 214 8.806146 GGACTCATATGTAATTTTTATGGGCAT 58.194 33.333 1.90 0.00 28.70 4.40
214 215 9.630098 GACTCATATGTAATTTTTATGGGCATG 57.370 33.333 1.90 0.00 28.70 4.06
215 216 9.365906 ACTCATATGTAATTTTTATGGGCATGA 57.634 29.630 1.90 0.00 28.70 3.07
218 219 9.985730 CATATGTAATTTTTATGGGCATGAAGT 57.014 29.630 0.00 0.00 0.00 3.01
220 221 7.473735 TGTAATTTTTATGGGCATGAAGTCA 57.526 32.000 0.00 0.00 0.00 3.41
221 222 7.319646 TGTAATTTTTATGGGCATGAAGTCAC 58.680 34.615 0.00 0.00 0.00 3.67
222 223 6.610075 AATTTTTATGGGCATGAAGTCACT 57.390 33.333 0.00 0.00 0.00 3.41
223 224 5.643379 TTTTTATGGGCATGAAGTCACTC 57.357 39.130 0.00 0.00 0.00 3.51
224 225 4.574674 TTTATGGGCATGAAGTCACTCT 57.425 40.909 0.00 0.00 0.00 3.24
225 226 4.574674 TTATGGGCATGAAGTCACTCTT 57.425 40.909 0.00 0.00 39.32 2.85
226 227 2.957402 TGGGCATGAAGTCACTCTTT 57.043 45.000 0.00 0.00 36.40 2.52
227 228 2.783135 TGGGCATGAAGTCACTCTTTC 58.217 47.619 0.00 0.00 36.40 2.62
228 229 1.734465 GGGCATGAAGTCACTCTTTCG 59.266 52.381 0.00 0.00 36.40 3.46
229 230 2.612972 GGGCATGAAGTCACTCTTTCGA 60.613 50.000 0.00 0.00 36.40 3.71
230 231 2.670414 GGCATGAAGTCACTCTTTCGAG 59.330 50.000 0.00 0.00 43.10 4.04
242 243 3.738399 CTCTTTCGAGTACTGACGACTG 58.262 50.000 0.00 0.00 38.24 3.51
243 244 3.136763 TCTTTCGAGTACTGACGACTGT 58.863 45.455 0.00 2.83 38.24 3.55
244 245 3.562973 TCTTTCGAGTACTGACGACTGTT 59.437 43.478 0.00 0.00 38.24 3.16
245 246 2.963498 TCGAGTACTGACGACTGTTG 57.037 50.000 0.00 0.00 33.62 3.33
246 247 1.069432 TCGAGTACTGACGACTGTTGC 60.069 52.381 0.00 0.00 33.62 4.17
247 248 1.334689 CGAGTACTGACGACTGTTGCA 60.335 52.381 0.00 0.00 0.00 4.08
248 249 2.739292 GAGTACTGACGACTGTTGCAA 58.261 47.619 0.00 0.00 0.00 4.08
249 250 2.470821 AGTACTGACGACTGTTGCAAC 58.529 47.619 22.83 22.83 0.00 4.17
250 251 1.189446 GTACTGACGACTGTTGCAACG 59.811 52.381 23.79 19.64 0.00 4.10
251 252 0.459585 ACTGACGACTGTTGCAACGT 60.460 50.000 23.79 22.43 41.57 3.99
252 253 0.650512 CTGACGACTGTTGCAACGTT 59.349 50.000 23.79 13.45 39.04 3.99
253 254 1.062002 CTGACGACTGTTGCAACGTTT 59.938 47.619 23.79 10.85 39.04 3.60
254 255 1.201976 TGACGACTGTTGCAACGTTTG 60.202 47.619 23.79 18.03 39.04 2.93
255 256 1.061421 GACGACTGTTGCAACGTTTGA 59.939 47.619 23.79 5.75 39.04 2.69
256 257 1.668751 ACGACTGTTGCAACGTTTGAT 59.331 42.857 23.79 5.73 35.47 2.57
257 258 2.286184 ACGACTGTTGCAACGTTTGATC 60.286 45.455 23.79 13.10 35.47 2.92
258 259 2.286125 CGACTGTTGCAACGTTTGATCA 60.286 45.455 23.79 3.60 0.00 2.92
259 260 3.606846 CGACTGTTGCAACGTTTGATCAT 60.607 43.478 23.79 2.03 0.00 2.45
260 261 3.631144 ACTGTTGCAACGTTTGATCATG 58.369 40.909 23.79 6.72 0.00 3.07
261 262 2.392821 TGTTGCAACGTTTGATCATGC 58.607 42.857 23.79 10.63 37.52 4.06
262 263 1.383080 GTTGCAACGTTTGATCATGCG 59.617 47.619 14.90 13.73 39.81 4.73
263 264 0.590682 TGCAACGTTTGATCATGCGT 59.409 45.000 16.14 16.14 39.81 5.24
264 265 0.976963 GCAACGTTTGATCATGCGTG 59.023 50.000 20.58 16.10 37.64 5.34
265 266 1.399599 GCAACGTTTGATCATGCGTGA 60.400 47.619 20.58 11.83 37.64 4.35
266 267 2.498905 CAACGTTTGATCATGCGTGAG 58.501 47.619 20.58 14.44 37.87 3.51
267 268 1.795768 ACGTTTGATCATGCGTGAGT 58.204 45.000 19.62 2.59 37.87 3.41
268 269 2.143122 ACGTTTGATCATGCGTGAGTT 58.857 42.857 19.62 0.00 37.87 3.01
269 270 3.322369 ACGTTTGATCATGCGTGAGTTA 58.678 40.909 19.62 0.17 37.87 2.24
270 271 3.122948 ACGTTTGATCATGCGTGAGTTAC 59.877 43.478 19.62 8.59 37.87 2.50
271 272 3.122780 CGTTTGATCATGCGTGAGTTACA 59.877 43.478 15.04 8.89 37.87 2.41
272 273 4.376920 CGTTTGATCATGCGTGAGTTACAA 60.377 41.667 15.04 13.75 37.87 2.41
273 274 4.926860 TTGATCATGCGTGAGTTACAAG 57.073 40.909 15.04 0.00 37.87 3.16
274 275 3.925379 TGATCATGCGTGAGTTACAAGT 58.075 40.909 15.04 0.00 37.87 3.16
275 276 4.314961 TGATCATGCGTGAGTTACAAGTT 58.685 39.130 15.04 0.00 37.87 2.66
276 277 4.388773 TGATCATGCGTGAGTTACAAGTTC 59.611 41.667 15.04 4.25 37.87 3.01
277 278 3.990092 TCATGCGTGAGTTACAAGTTCT 58.010 40.909 3.97 0.00 0.00 3.01
278 279 4.377021 TCATGCGTGAGTTACAAGTTCTT 58.623 39.130 3.97 0.00 0.00 2.52
279 280 4.814234 TCATGCGTGAGTTACAAGTTCTTT 59.186 37.500 3.97 0.00 0.00 2.52
280 281 5.295787 TCATGCGTGAGTTACAAGTTCTTTT 59.704 36.000 3.97 0.00 0.00 2.27
281 282 5.151632 TGCGTGAGTTACAAGTTCTTTTC 57.848 39.130 0.00 0.00 0.00 2.29
282 283 4.873827 TGCGTGAGTTACAAGTTCTTTTCT 59.126 37.500 0.00 0.00 0.00 2.52
283 284 5.006358 TGCGTGAGTTACAAGTTCTTTTCTC 59.994 40.000 0.00 0.00 0.00 2.87
284 285 5.657499 CGTGAGTTACAAGTTCTTTTCTCG 58.343 41.667 0.00 0.00 0.00 4.04
285 286 5.433005 GTGAGTTACAAGTTCTTTTCTCGC 58.567 41.667 0.00 0.00 0.00 5.03
286 287 5.234543 GTGAGTTACAAGTTCTTTTCTCGCT 59.765 40.000 0.00 0.00 0.00 4.93
287 288 6.420008 GTGAGTTACAAGTTCTTTTCTCGCTA 59.580 38.462 0.00 0.00 0.00 4.26
288 289 6.982141 TGAGTTACAAGTTCTTTTCTCGCTAA 59.018 34.615 0.00 0.00 0.00 3.09
289 290 7.493320 TGAGTTACAAGTTCTTTTCTCGCTAAA 59.507 33.333 0.00 0.00 0.00 1.85
290 291 8.205131 AGTTACAAGTTCTTTTCTCGCTAAAA 57.795 30.769 0.00 0.00 0.00 1.52
291 292 8.671028 AGTTACAAGTTCTTTTCTCGCTAAAAA 58.329 29.630 0.00 0.00 0.00 1.94
292 293 8.731326 GTTACAAGTTCTTTTCTCGCTAAAAAC 58.269 33.333 0.00 0.00 0.00 2.43
293 294 6.263344 ACAAGTTCTTTTCTCGCTAAAAACC 58.737 36.000 0.00 0.00 0.00 3.27
294 295 5.091910 AGTTCTTTTCTCGCTAAAAACCG 57.908 39.130 0.00 0.00 0.00 4.44
295 296 4.573607 AGTTCTTTTCTCGCTAAAAACCGT 59.426 37.500 0.00 0.00 0.00 4.83
296 297 5.065602 AGTTCTTTTCTCGCTAAAAACCGTT 59.934 36.000 0.00 0.00 0.00 4.44
297 298 4.839796 TCTTTTCTCGCTAAAAACCGTTG 58.160 39.130 0.00 0.00 0.00 4.10
298 299 4.333372 TCTTTTCTCGCTAAAAACCGTTGT 59.667 37.500 0.00 0.00 0.00 3.32
299 300 3.865224 TTCTCGCTAAAAACCGTTGTC 57.135 42.857 0.00 0.00 0.00 3.18
300 301 2.823984 TCTCGCTAAAAACCGTTGTCA 58.176 42.857 0.00 0.00 0.00 3.58
301 302 2.540931 TCTCGCTAAAAACCGTTGTCAC 59.459 45.455 0.00 0.00 0.00 3.67
302 303 2.542595 CTCGCTAAAAACCGTTGTCACT 59.457 45.455 0.00 0.00 0.00 3.41
303 304 2.937799 TCGCTAAAAACCGTTGTCACTT 59.062 40.909 0.00 0.00 0.00 3.16
304 305 3.033185 CGCTAAAAACCGTTGTCACTTG 58.967 45.455 0.00 0.00 0.00 3.16
305 306 3.368495 GCTAAAAACCGTTGTCACTTGG 58.632 45.455 0.00 0.00 0.00 3.61
306 307 3.065648 GCTAAAAACCGTTGTCACTTGGA 59.934 43.478 0.00 0.00 0.00 3.53
307 308 3.775661 AAAAACCGTTGTCACTTGGAG 57.224 42.857 0.00 0.00 0.00 3.86
308 309 2.413310 AAACCGTTGTCACTTGGAGT 57.587 45.000 0.00 0.00 0.00 3.85
321 322 4.873746 ACTTGGAGTGATATATGACGGG 57.126 45.455 0.00 0.00 0.00 5.28
322 323 3.578716 ACTTGGAGTGATATATGACGGGG 59.421 47.826 0.00 0.00 0.00 5.73
323 324 3.254093 TGGAGTGATATATGACGGGGT 57.746 47.619 0.00 0.00 0.00 4.95
324 325 3.162666 TGGAGTGATATATGACGGGGTC 58.837 50.000 0.00 0.00 0.00 4.46
325 326 3.181422 TGGAGTGATATATGACGGGGTCT 60.181 47.826 0.00 0.00 33.15 3.85
326 327 3.444388 GGAGTGATATATGACGGGGTCTC 59.556 52.174 0.00 0.00 33.15 3.36
327 328 4.079970 GAGTGATATATGACGGGGTCTCA 58.920 47.826 0.00 0.00 33.15 3.27
328 329 4.678256 AGTGATATATGACGGGGTCTCAT 58.322 43.478 0.00 0.00 33.15 2.90
329 330 5.087323 AGTGATATATGACGGGGTCTCATT 58.913 41.667 0.00 0.00 33.15 2.57
330 331 5.047021 AGTGATATATGACGGGGTCTCATTG 60.047 44.000 0.00 0.00 33.15 2.82
331 332 4.222810 TGATATATGACGGGGTCTCATTGG 59.777 45.833 0.00 0.00 33.15 3.16
332 333 2.168458 TATGACGGGGTCTCATTGGA 57.832 50.000 0.00 0.00 33.15 3.53
333 334 0.833287 ATGACGGGGTCTCATTGGAG 59.167 55.000 0.00 0.00 42.80 3.86
334 335 0.544357 TGACGGGGTCTCATTGGAGT 60.544 55.000 0.00 0.00 42.05 3.85
335 336 0.613777 GACGGGGTCTCATTGGAGTT 59.386 55.000 0.00 0.00 42.05 3.01
336 337 1.003233 GACGGGGTCTCATTGGAGTTT 59.997 52.381 0.00 0.00 42.05 2.66
337 338 2.235402 GACGGGGTCTCATTGGAGTTTA 59.765 50.000 0.00 0.00 42.05 2.01
338 339 2.844348 ACGGGGTCTCATTGGAGTTTAT 59.156 45.455 0.00 0.00 42.05 1.40
339 340 3.118371 ACGGGGTCTCATTGGAGTTTATC 60.118 47.826 0.00 0.00 42.05 1.75
340 341 3.134804 CGGGGTCTCATTGGAGTTTATCT 59.865 47.826 0.00 0.00 42.05 1.98
341 342 4.344102 CGGGGTCTCATTGGAGTTTATCTA 59.656 45.833 0.00 0.00 42.05 1.98
342 343 5.612351 GGGGTCTCATTGGAGTTTATCTAC 58.388 45.833 0.00 0.00 42.05 2.59
343 344 5.367060 GGGGTCTCATTGGAGTTTATCTACT 59.633 44.000 0.00 0.00 42.05 2.57
344 345 6.553852 GGGGTCTCATTGGAGTTTATCTACTA 59.446 42.308 0.00 0.00 42.05 1.82
345 346 7.070821 GGGGTCTCATTGGAGTTTATCTACTAA 59.929 40.741 0.00 0.00 42.05 2.24
346 347 8.483758 GGGTCTCATTGGAGTTTATCTACTAAA 58.516 37.037 0.00 0.00 42.05 1.85
347 348 9.886132 GGTCTCATTGGAGTTTATCTACTAAAA 57.114 33.333 0.00 0.00 42.05 1.52
373 374 9.959721 AAATGTTCACTGGTAAGTATGAATACT 57.040 29.630 0.00 0.00 45.04 2.12
374 375 9.601217 AATGTTCACTGGTAAGTATGAATACTC 57.399 33.333 3.51 0.00 42.47 2.59
375 376 8.129496 TGTTCACTGGTAAGTATGAATACTCA 57.871 34.615 3.51 0.00 42.47 3.41
376 377 8.590204 TGTTCACTGGTAAGTATGAATACTCAA 58.410 33.333 3.51 0.00 42.47 3.02
377 378 9.431887 GTTCACTGGTAAGTATGAATACTCAAA 57.568 33.333 3.51 0.00 42.47 2.69
394 395 3.119225 AAAAAGGCCCGTAGCAACA 57.881 47.368 0.00 0.00 46.50 3.33
395 396 0.671796 AAAAAGGCCCGTAGCAACAC 59.328 50.000 0.00 0.00 46.50 3.32
396 397 0.466555 AAAAGGCCCGTAGCAACACA 60.467 50.000 0.00 0.00 46.50 3.72
397 398 1.170290 AAAGGCCCGTAGCAACACAC 61.170 55.000 0.00 0.00 46.50 3.82
398 399 3.419759 GGCCCGTAGCAACACACG 61.420 66.667 0.00 0.00 46.50 4.49
402 403 2.663520 CGTAGCAACACACGGGCA 60.664 61.111 0.00 0.00 34.57 5.36
403 404 2.032634 CGTAGCAACACACGGGCAT 61.033 57.895 0.00 0.00 34.57 4.40
404 405 1.573829 CGTAGCAACACACGGGCATT 61.574 55.000 0.00 0.00 34.57 3.56
405 406 0.168128 GTAGCAACACACGGGCATTC 59.832 55.000 0.00 0.00 0.00 2.67
406 407 0.036164 TAGCAACACACGGGCATTCT 59.964 50.000 0.00 0.00 0.00 2.40
407 408 0.036164 AGCAACACACGGGCATTCTA 59.964 50.000 0.00 0.00 0.00 2.10
408 409 0.168128 GCAACACACGGGCATTCTAC 59.832 55.000 0.00 0.00 0.00 2.59
409 410 1.808411 CAACACACGGGCATTCTACT 58.192 50.000 0.00 0.00 0.00 2.57
410 411 2.933492 GCAACACACGGGCATTCTACTA 60.933 50.000 0.00 0.00 0.00 1.82
411 412 2.930040 CAACACACGGGCATTCTACTAG 59.070 50.000 0.00 0.00 0.00 2.57
412 413 2.176889 ACACACGGGCATTCTACTAGT 58.823 47.619 0.00 0.00 0.00 2.57
413 414 2.565834 ACACACGGGCATTCTACTAGTT 59.434 45.455 0.00 0.00 0.00 2.24
414 415 3.765511 ACACACGGGCATTCTACTAGTTA 59.234 43.478 0.00 0.00 0.00 2.24
415 416 4.142227 ACACACGGGCATTCTACTAGTTAG 60.142 45.833 0.00 0.00 0.00 2.34
416 417 4.097437 CACACGGGCATTCTACTAGTTAGA 59.903 45.833 0.00 0.00 34.77 2.10
417 418 4.894114 ACACGGGCATTCTACTAGTTAGAT 59.106 41.667 0.00 0.00 36.65 1.98
418 419 6.016527 CACACGGGCATTCTACTAGTTAGATA 60.017 42.308 0.00 0.00 36.65 1.98
419 420 6.548622 ACACGGGCATTCTACTAGTTAGATAA 59.451 38.462 0.00 0.00 36.65 1.75
420 421 7.069085 ACACGGGCATTCTACTAGTTAGATAAA 59.931 37.037 0.00 0.00 36.65 1.40
421 422 7.924412 CACGGGCATTCTACTAGTTAGATAAAA 59.076 37.037 0.00 0.00 36.65 1.52
422 423 8.480501 ACGGGCATTCTACTAGTTAGATAAAAA 58.519 33.333 0.00 0.00 36.65 1.94
423 424 9.490379 CGGGCATTCTACTAGTTAGATAAAAAT 57.510 33.333 0.00 0.00 36.65 1.82
432 433 8.848474 ACTAGTTAGATAAAAATGTGCAGTGT 57.152 30.769 0.00 0.00 0.00 3.55
433 434 9.284968 ACTAGTTAGATAAAAATGTGCAGTGTT 57.715 29.630 0.00 0.00 0.00 3.32
436 437 8.850156 AGTTAGATAAAAATGTGCAGTGTTTCT 58.150 29.630 0.00 0.00 0.00 2.52
437 438 9.463443 GTTAGATAAAAATGTGCAGTGTTTCTT 57.537 29.630 0.00 0.00 0.00 2.52
440 441 9.066892 AGATAAAAATGTGCAGTGTTTCTTAGA 57.933 29.630 0.00 0.00 0.00 2.10
441 442 9.677567 GATAAAAATGTGCAGTGTTTCTTAGAA 57.322 29.630 0.00 0.00 0.00 2.10
443 444 8.770438 AAAAATGTGCAGTGTTTCTTAGAAAA 57.230 26.923 9.14 0.00 0.00 2.29
444 445 7.755582 AAATGTGCAGTGTTTCTTAGAAAAC 57.244 32.000 9.14 9.71 39.16 2.43
445 446 5.888691 TGTGCAGTGTTTCTTAGAAAACA 57.111 34.783 9.14 6.30 44.59 2.83
521 522 6.870971 AACTTACGCTATTTCCACTTTTCA 57.129 33.333 0.00 0.00 0.00 2.69
522 523 6.481954 ACTTACGCTATTTCCACTTTTCAG 57.518 37.500 0.00 0.00 0.00 3.02
539 540 6.695713 ACTTTTCAGAACGCTATTTTCAAACC 59.304 34.615 0.00 0.00 0.00 3.27
672 674 1.359848 CGACACAGCTTACATCCCAC 58.640 55.000 0.00 0.00 0.00 4.61
706 708 2.172483 GACACACAGATGGACGGCCT 62.172 60.000 9.82 0.00 34.31 5.19
752 754 0.681243 GGTGGGAAAGCCTGCTTAGG 60.681 60.000 4.57 0.00 34.84 2.69
874 876 1.370587 CTCTCCCTCGTCCGTCAGAC 61.371 65.000 0.00 0.00 42.54 3.51
922 924 1.749638 TCGCTCTCCCTCTCCGAAC 60.750 63.158 0.00 0.00 0.00 3.95
923 925 2.776913 CGCTCTCCCTCTCCGAACC 61.777 68.421 0.00 0.00 0.00 3.62
924 926 2.428085 GCTCTCCCTCTCCGAACCC 61.428 68.421 0.00 0.00 0.00 4.11
925 927 1.758906 CTCTCCCTCTCCGAACCCC 60.759 68.421 0.00 0.00 0.00 4.95
926 928 2.231540 CTCTCCCTCTCCGAACCCCT 62.232 65.000 0.00 0.00 0.00 4.79
927 929 1.758906 CTCCCTCTCCGAACCCCTC 60.759 68.421 0.00 0.00 0.00 4.30
928 930 2.764547 CCCTCTCCGAACCCCTCC 60.765 72.222 0.00 0.00 0.00 4.30
929 931 3.148279 CCTCTCCGAACCCCTCCG 61.148 72.222 0.00 0.00 0.00 4.63
930 932 3.839432 CTCTCCGAACCCCTCCGC 61.839 72.222 0.00 0.00 0.00 5.54
1076 1104 0.794473 GACGAATTTCGAGGCGGTTT 59.206 50.000 24.50 0.00 43.74 3.27
1129 1160 2.051423 GTTTGCGCCTCTTAGTTTTGC 58.949 47.619 4.18 0.00 0.00 3.68
1327 1368 2.086054 AGTGAACCTGCTGACGATTC 57.914 50.000 0.00 0.00 0.00 2.52
1328 1369 1.620819 AGTGAACCTGCTGACGATTCT 59.379 47.619 0.00 0.00 0.00 2.40
1329 1370 2.826128 AGTGAACCTGCTGACGATTCTA 59.174 45.455 0.00 0.00 0.00 2.10
1330 1371 3.119316 AGTGAACCTGCTGACGATTCTAG 60.119 47.826 0.00 0.00 0.00 2.43
1331 1372 2.826128 TGAACCTGCTGACGATTCTAGT 59.174 45.455 0.00 0.00 0.00 2.57
1332 1373 3.258372 TGAACCTGCTGACGATTCTAGTT 59.742 43.478 0.00 0.00 0.00 2.24
1333 1374 3.963428 ACCTGCTGACGATTCTAGTTT 57.037 42.857 0.00 0.00 0.00 2.66
1334 1375 3.589988 ACCTGCTGACGATTCTAGTTTG 58.410 45.455 0.00 0.00 0.00 2.93
1335 1376 2.349886 CCTGCTGACGATTCTAGTTTGC 59.650 50.000 0.00 0.00 0.00 3.68
1336 1377 3.257393 CTGCTGACGATTCTAGTTTGCT 58.743 45.455 0.00 0.00 0.00 3.91
1337 1378 3.664107 TGCTGACGATTCTAGTTTGCTT 58.336 40.909 0.00 0.00 0.00 3.91
1338 1379 3.679980 TGCTGACGATTCTAGTTTGCTTC 59.320 43.478 0.00 0.00 0.00 3.86
1376 1430 2.220824 CGCATCTCGTGTTTCTGTTGAA 59.779 45.455 0.00 0.00 0.00 2.69
1421 1483 3.561310 GCTGACTGTTGTTGTTGATCTGA 59.439 43.478 0.00 0.00 0.00 3.27
1512 2248 0.036294 GGTTCTACTGCTGGGACACC 60.036 60.000 0.00 0.00 37.24 4.16
1587 2323 1.726853 ATCAACCAGCTAGTCGCAAC 58.273 50.000 0.00 0.00 42.61 4.17
1594 2330 5.373981 ACCAGCTAGTCGCAACTATATAC 57.626 43.478 0.00 0.00 42.61 1.47
1637 2373 2.488153 TGCTATCTACGTCCGATCATGG 59.512 50.000 0.00 0.00 0.00 3.66
1662 2407 8.231161 GGTTCAGACTTTCAGTTATCTTTTAGC 58.769 37.037 0.00 0.00 0.00 3.09
1732 2477 7.770366 TCAGTACTCTTGTTGGTTATAGTGA 57.230 36.000 0.00 0.00 0.00 3.41
1737 2482 9.216117 GTACTCTTGTTGGTTATAGTGACATTT 57.784 33.333 0.00 0.00 0.00 2.32
1771 2516 0.537143 TGCAGGCCTTGTTTGTCGAT 60.537 50.000 0.00 0.00 0.00 3.59
1772 2517 0.109597 GCAGGCCTTGTTTGTCGATG 60.110 55.000 0.00 0.00 0.00 3.84
1849 2594 5.120208 GCATTAGTTGCGAGAAACAAGTAGA 59.880 40.000 0.00 0.00 42.54 2.59
1851 2596 4.054780 AGTTGCGAGAAACAAGTAGACA 57.945 40.909 0.00 0.00 32.21 3.41
1852 2597 4.632153 AGTTGCGAGAAACAAGTAGACAT 58.368 39.130 0.00 0.00 32.21 3.06
1853 2598 5.057149 AGTTGCGAGAAACAAGTAGACATT 58.943 37.500 0.00 0.00 32.21 2.71
1854 2599 6.220930 AGTTGCGAGAAACAAGTAGACATTA 58.779 36.000 0.00 0.00 32.21 1.90
1855 2600 6.145696 AGTTGCGAGAAACAAGTAGACATTAC 59.854 38.462 0.00 0.00 32.21 1.89
1856 2601 5.779922 TGCGAGAAACAAGTAGACATTACT 58.220 37.500 0.00 0.00 0.00 2.24
1857 2602 5.633601 TGCGAGAAACAAGTAGACATTACTG 59.366 40.000 0.00 0.00 0.00 2.74
1858 2603 5.444745 GCGAGAAACAAGTAGACATTACTGC 60.445 44.000 0.00 0.00 0.00 4.40
1859 2604 5.633601 CGAGAAACAAGTAGACATTACTGCA 59.366 40.000 0.00 0.00 0.00 4.41
1860 2605 6.183360 CGAGAAACAAGTAGACATTACTGCAG 60.183 42.308 13.48 13.48 0.00 4.41
1864 2609 2.187958 AGTAGACATTACTGCAGGCCA 58.812 47.619 19.93 0.88 0.00 5.36
1867 2612 2.875296 AGACATTACTGCAGGCCAAAA 58.125 42.857 19.93 4.50 0.00 2.44
1913 2658 2.744202 CCACTTACTGCACTCATGGTTC 59.256 50.000 0.00 0.00 0.00 3.62
1939 2684 9.155975 CTGCATACTAGTAAGTTCAGATGTTTT 57.844 33.333 6.70 0.00 37.15 2.43
2001 2746 1.349026 AGCTTGTCTGCCTGCTTCTTA 59.651 47.619 0.00 0.00 30.96 2.10
2035 2780 1.271054 TGGCCTTCTTCAAGAGCACTC 60.271 52.381 3.32 0.00 31.08 3.51
2213 2958 4.766891 CCACAATGGTTCATACCTTGTCTT 59.233 41.667 0.00 0.00 45.27 3.01
2214 2959 5.335897 CCACAATGGTTCATACCTTGTCTTG 60.336 44.000 0.00 0.00 45.27 3.02
2251 2999 2.584492 AACAAGAAACTTGTGCTGCC 57.416 45.000 16.08 0.00 32.22 4.85
2255 3003 2.798283 CAAGAAACTTGTGCTGCCATTG 59.202 45.455 0.00 0.00 0.00 2.82
2298 3046 6.043243 TGACAGTGGATTCTTACTTTCTCCTT 59.957 38.462 0.00 0.00 0.00 3.36
2325 3073 2.441532 AGCATCCATGGCCAGTGC 60.442 61.111 21.03 21.03 36.11 4.40
2453 3201 8.478877 CAGTCTCCACCTAGTTACTATTTCATT 58.521 37.037 0.00 0.00 0.00 2.57
2470 3218 9.994432 CTATTTCATTAGTTGTCCTGAATTGAC 57.006 33.333 0.00 0.00 0.00 3.18
2485 3233 6.358974 TGAATTGACCTGACACATCTCTTA 57.641 37.500 0.00 0.00 0.00 2.10
2592 3340 2.683211 AAGCCAAGATGGTGACCTTT 57.317 45.000 2.11 0.00 40.46 3.11
2694 3442 2.462723 AGGAAGCTCTCAGGGTAACTC 58.537 52.381 0.00 0.00 0.00 3.01
2735 3483 4.073293 ACCTTTACCACAACTGTCTCAG 57.927 45.455 0.00 0.00 37.52 3.35
2761 3509 3.756117 ACACAGATTCTCCTTTCCAACC 58.244 45.455 0.00 0.00 0.00 3.77
2770 3518 4.672899 TCTCCTTTCCAACCAAAATAGGG 58.327 43.478 0.00 0.00 0.00 3.53
2795 3543 7.223971 GGTAACGTTATATGCTCATTCTGAACA 59.776 37.037 11.86 0.00 0.00 3.18
2839 3587 2.009108 CGATTGCAGGGACATGACG 58.991 57.895 0.00 0.00 0.00 4.35
2872 3620 4.467107 GAGACGGCCCTCCTCCCT 62.467 72.222 0.00 0.00 0.00 4.20
2969 3717 4.260170 ACTTCCTCTGATGAAACTGCATC 58.740 43.478 0.00 0.00 43.84 3.91
3103 3851 4.069300 TCATGGACTGAGCTGATCAATC 57.931 45.455 0.00 0.00 37.52 2.67
3111 3859 0.392336 AGCTGATCAATCGGAGGCTC 59.608 55.000 5.78 5.78 35.13 4.70
3112 3860 0.392336 GCTGATCAATCGGAGGCTCT 59.608 55.000 15.23 0.00 35.13 4.09
3235 3983 2.477863 GGTTTGTGCGATAGTTCCATGC 60.478 50.000 0.00 0.00 39.35 4.06
3254 4002 3.476552 TGCTTTTCTCAGTGGTAGTTGG 58.523 45.455 0.00 0.00 0.00 3.77
3272 4020 5.934781 AGTTGGTCTGAGATTTCTTTGTCT 58.065 37.500 0.00 0.00 0.00 3.41
3322 4070 6.993902 TGTGAAGGTTAATCGGTTTCTTTACT 59.006 34.615 11.76 0.00 0.00 2.24
3338 4086 6.282199 TCTTTACTATTCTGGAGTGTGGTC 57.718 41.667 0.00 0.00 0.00 4.02
3442 4218 9.827411 GGATAAGTTCCTTCGCATTTAATATTC 57.173 33.333 0.00 0.00 41.78 1.75
3446 4222 7.758495 AGTTCCTTCGCATTTAATATTCGTTT 58.242 30.769 0.00 0.00 0.00 3.60
3447 4223 7.696453 AGTTCCTTCGCATTTAATATTCGTTTG 59.304 33.333 0.00 0.00 0.00 2.93
3708 4489 5.738909 CACATTTTCTAGGTCACTCTGGAT 58.261 41.667 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.939509 AGTACATGCACACGGTAAAATC 57.060 40.909 0.00 0.00 0.00 2.17
1 2 4.757657 TGAAGTACATGCACACGGTAAAAT 59.242 37.500 0.00 0.00 0.00 1.82
2 3 4.127907 TGAAGTACATGCACACGGTAAAA 58.872 39.130 0.00 0.00 0.00 1.52
3 4 3.729966 TGAAGTACATGCACACGGTAAA 58.270 40.909 0.00 0.00 0.00 2.01
4 5 3.388345 TGAAGTACATGCACACGGTAA 57.612 42.857 0.00 0.00 0.00 2.85
5 6 3.603158 ATGAAGTACATGCACACGGTA 57.397 42.857 0.00 0.00 37.87 4.02
6 7 2.472695 ATGAAGTACATGCACACGGT 57.527 45.000 0.00 0.00 37.87 4.83
15 16 5.047872 TGCAATTCAGCAACATGAAGTACAT 60.048 36.000 0.00 0.00 42.20 2.29
16 17 4.277921 TGCAATTCAGCAACATGAAGTACA 59.722 37.500 0.00 0.00 42.20 2.90
17 18 4.797471 TGCAATTCAGCAACATGAAGTAC 58.203 39.130 0.00 0.00 42.20 2.73
27 28 7.039784 AGGAACTTTACTAATGCAATTCAGCAA 60.040 33.333 0.00 0.00 42.88 3.91
28 29 6.434028 AGGAACTTTACTAATGCAATTCAGCA 59.566 34.615 0.00 0.00 43.71 4.41
29 30 6.856895 AGGAACTTTACTAATGCAATTCAGC 58.143 36.000 0.00 0.00 33.07 4.26
30 31 7.121168 TGGAGGAACTTTACTAATGCAATTCAG 59.879 37.037 0.00 0.00 41.55 3.02
31 32 6.945435 TGGAGGAACTTTACTAATGCAATTCA 59.055 34.615 0.00 0.00 41.55 2.57
32 33 7.391148 TGGAGGAACTTTACTAATGCAATTC 57.609 36.000 0.00 0.00 41.55 2.17
33 34 7.961326 ATGGAGGAACTTTACTAATGCAATT 57.039 32.000 0.00 0.00 41.55 2.32
34 35 7.615365 TCAATGGAGGAACTTTACTAATGCAAT 59.385 33.333 0.00 0.00 41.55 3.56
35 36 6.945435 TCAATGGAGGAACTTTACTAATGCAA 59.055 34.615 0.00 0.00 41.55 4.08
36 37 6.480763 TCAATGGAGGAACTTTACTAATGCA 58.519 36.000 0.00 0.00 41.55 3.96
37 38 7.573968 ATCAATGGAGGAACTTTACTAATGC 57.426 36.000 0.00 0.00 41.55 3.56
40 41 9.667107 CACTTATCAATGGAGGAACTTTACTAA 57.333 33.333 0.00 0.00 41.55 2.24
41 42 8.265055 CCACTTATCAATGGAGGAACTTTACTA 58.735 37.037 0.00 0.00 41.55 1.82
42 43 7.112779 CCACTTATCAATGGAGGAACTTTACT 58.887 38.462 0.00 0.00 41.55 2.24
43 44 6.183360 GCCACTTATCAATGGAGGAACTTTAC 60.183 42.308 0.00 0.00 41.55 2.01
44 45 5.885912 GCCACTTATCAATGGAGGAACTTTA 59.114 40.000 0.00 0.00 41.55 1.85
45 46 4.706962 GCCACTTATCAATGGAGGAACTTT 59.293 41.667 0.00 0.00 41.55 2.66
46 47 4.273318 GCCACTTATCAATGGAGGAACTT 58.727 43.478 0.00 0.00 41.55 2.66
48 49 2.952310 GGCCACTTATCAATGGAGGAAC 59.048 50.000 0.00 0.00 38.34 3.62
49 50 2.580322 TGGCCACTTATCAATGGAGGAA 59.420 45.455 0.00 0.00 38.34 3.36
50 51 2.204463 TGGCCACTTATCAATGGAGGA 58.796 47.619 0.00 0.00 38.34 3.71
51 52 2.734755 TGGCCACTTATCAATGGAGG 57.265 50.000 0.00 0.00 38.34 4.30
52 53 5.242393 CCTATTTGGCCACTTATCAATGGAG 59.758 44.000 3.88 0.00 38.34 3.86
53 54 5.139727 CCTATTTGGCCACTTATCAATGGA 58.860 41.667 3.88 0.00 38.34 3.41
54 55 4.895297 ACCTATTTGGCCACTTATCAATGG 59.105 41.667 3.88 3.14 40.22 3.16
55 56 6.322201 AGAACCTATTTGGCCACTTATCAATG 59.678 38.462 3.88 0.00 40.22 2.82
56 57 6.435164 AGAACCTATTTGGCCACTTATCAAT 58.565 36.000 3.88 3.75 40.22 2.57
57 58 5.826643 AGAACCTATTTGGCCACTTATCAA 58.173 37.500 3.88 0.00 40.22 2.57
58 59 5.191722 AGAGAACCTATTTGGCCACTTATCA 59.808 40.000 3.88 0.00 40.22 2.15
59 60 5.685728 AGAGAACCTATTTGGCCACTTATC 58.314 41.667 3.88 0.00 40.22 1.75
60 61 5.717119 AGAGAACCTATTTGGCCACTTAT 57.283 39.130 3.88 1.60 40.22 1.73
61 62 6.630203 TTAGAGAACCTATTTGGCCACTTA 57.370 37.500 3.88 0.00 40.22 2.24
62 63 5.514500 TTAGAGAACCTATTTGGCCACTT 57.486 39.130 3.88 0.00 40.22 3.16
63 64 5.254115 GTTTAGAGAACCTATTTGGCCACT 58.746 41.667 3.88 0.00 40.22 4.00
64 65 4.398358 GGTTTAGAGAACCTATTTGGCCAC 59.602 45.833 3.88 0.00 40.22 5.01
65 66 4.595986 GGTTTAGAGAACCTATTTGGCCA 58.404 43.478 0.00 0.00 40.22 5.36
75 76 4.760878 CCTAGCAGAAGGTTTAGAGAACC 58.239 47.826 0.00 0.00 40.58 3.62
76 77 4.185394 GCCTAGCAGAAGGTTTAGAGAAC 58.815 47.826 2.23 0.00 39.02 3.01
77 78 3.197983 GGCCTAGCAGAAGGTTTAGAGAA 59.802 47.826 0.00 0.00 39.02 2.87
78 79 2.766828 GGCCTAGCAGAAGGTTTAGAGA 59.233 50.000 0.00 0.00 39.02 3.10
79 80 2.769095 AGGCCTAGCAGAAGGTTTAGAG 59.231 50.000 1.29 0.00 39.02 2.43
80 81 2.834113 AGGCCTAGCAGAAGGTTTAGA 58.166 47.619 1.29 0.00 39.02 2.10
81 82 3.536570 GAAGGCCTAGCAGAAGGTTTAG 58.463 50.000 5.16 0.00 39.02 1.85
82 83 2.238898 GGAAGGCCTAGCAGAAGGTTTA 59.761 50.000 5.16 0.00 39.02 2.01
83 84 1.004862 GGAAGGCCTAGCAGAAGGTTT 59.995 52.381 5.16 0.00 39.02 3.27
84 85 0.621082 GGAAGGCCTAGCAGAAGGTT 59.379 55.000 5.16 0.00 39.02 3.50
85 86 0.252927 AGGAAGGCCTAGCAGAAGGT 60.253 55.000 5.16 0.00 44.74 3.50
86 87 0.915364 AAGGAAGGCCTAGCAGAAGG 59.085 55.000 5.16 0.00 46.28 3.46
87 88 1.280421 ACAAGGAAGGCCTAGCAGAAG 59.720 52.381 5.16 0.00 46.28 2.85
88 89 1.003580 CACAAGGAAGGCCTAGCAGAA 59.996 52.381 5.16 0.00 46.28 3.02
89 90 0.615331 CACAAGGAAGGCCTAGCAGA 59.385 55.000 5.16 0.00 46.28 4.26
90 91 0.615331 TCACAAGGAAGGCCTAGCAG 59.385 55.000 5.16 0.00 46.28 4.24
91 92 1.064003 TTCACAAGGAAGGCCTAGCA 58.936 50.000 5.16 0.00 46.28 3.49
92 93 2.019984 CATTCACAAGGAAGGCCTAGC 58.980 52.381 5.16 0.10 46.28 3.42
93 94 3.634397 TCATTCACAAGGAAGGCCTAG 57.366 47.619 5.16 0.00 46.28 3.02
94 95 3.371917 CCATCATTCACAAGGAAGGCCTA 60.372 47.826 5.16 0.00 46.28 3.93
96 97 1.753073 CCATCATTCACAAGGAAGGCC 59.247 52.381 0.00 0.00 39.30 5.19
97 98 2.165030 CACCATCATTCACAAGGAAGGC 59.835 50.000 0.00 0.00 39.30 4.35
98 99 3.424703 ACACCATCATTCACAAGGAAGG 58.575 45.455 0.00 0.00 39.30 3.46
99 100 6.207417 AGTTTACACCATCATTCACAAGGAAG 59.793 38.462 0.00 0.00 39.30 3.46
100 101 6.016360 CAGTTTACACCATCATTCACAAGGAA 60.016 38.462 0.00 0.00 40.46 3.36
101 102 5.473162 CAGTTTACACCATCATTCACAAGGA 59.527 40.000 0.00 0.00 0.00 3.36
102 103 5.241506 ACAGTTTACACCATCATTCACAAGG 59.758 40.000 0.00 0.00 0.00 3.61
103 104 6.317789 ACAGTTTACACCATCATTCACAAG 57.682 37.500 0.00 0.00 0.00 3.16
104 105 6.707440 AACAGTTTACACCATCATTCACAA 57.293 33.333 0.00 0.00 0.00 3.33
105 106 6.319911 TGAAACAGTTTACACCATCATTCACA 59.680 34.615 0.00 0.00 0.00 3.58
106 107 6.734137 TGAAACAGTTTACACCATCATTCAC 58.266 36.000 0.00 0.00 0.00 3.18
107 108 6.951062 TGAAACAGTTTACACCATCATTCA 57.049 33.333 0.00 0.00 0.00 2.57
108 109 7.425606 ACTTGAAACAGTTTACACCATCATTC 58.574 34.615 0.00 0.00 0.00 2.67
109 110 7.346751 ACTTGAAACAGTTTACACCATCATT 57.653 32.000 0.00 0.00 0.00 2.57
110 111 6.959639 ACTTGAAACAGTTTACACCATCAT 57.040 33.333 0.00 0.00 0.00 2.45
111 112 7.276658 TCTACTTGAAACAGTTTACACCATCA 58.723 34.615 0.00 0.00 0.00 3.07
112 113 7.724305 TCTACTTGAAACAGTTTACACCATC 57.276 36.000 0.00 0.00 0.00 3.51
113 114 9.216117 GTATCTACTTGAAACAGTTTACACCAT 57.784 33.333 0.00 0.00 0.00 3.55
114 115 8.205512 TGTATCTACTTGAAACAGTTTACACCA 58.794 33.333 0.00 0.00 0.00 4.17
115 116 8.493547 GTGTATCTACTTGAAACAGTTTACACC 58.506 37.037 0.00 0.00 34.40 4.16
116 117 9.037737 TGTGTATCTACTTGAAACAGTTTACAC 57.962 33.333 12.83 12.83 37.18 2.90
117 118 9.772973 ATGTGTATCTACTTGAAACAGTTTACA 57.227 29.630 0.00 0.00 0.00 2.41
121 122 9.944376 ACATATGTGTATCTACTTGAAACAGTT 57.056 29.630 7.78 0.00 36.63 3.16
122 123 9.371136 CACATATGTGTATCTACTTGAAACAGT 57.629 33.333 24.91 0.00 40.96 3.55
123 124 8.820933 CCACATATGTGTATCTACTTGAAACAG 58.179 37.037 29.25 8.37 44.21 3.16
124 125 7.768582 CCCACATATGTGTATCTACTTGAAACA 59.231 37.037 29.25 0.00 44.21 2.83
125 126 7.769044 ACCCACATATGTGTATCTACTTGAAAC 59.231 37.037 29.25 0.00 44.21 2.78
126 127 7.857456 ACCCACATATGTGTATCTACTTGAAA 58.143 34.615 29.25 0.00 44.21 2.69
127 128 7.432148 ACCCACATATGTGTATCTACTTGAA 57.568 36.000 29.25 0.00 44.21 2.69
128 129 8.541899 TTACCCACATATGTGTATCTACTTGA 57.458 34.615 29.25 6.09 44.21 3.02
129 130 9.607988 TTTTACCCACATATGTGTATCTACTTG 57.392 33.333 29.25 13.69 44.21 3.16
131 132 9.832445 CTTTTTACCCACATATGTGTATCTACT 57.168 33.333 29.25 9.70 44.21 2.57
132 133 9.609346 ACTTTTTACCCACATATGTGTATCTAC 57.391 33.333 29.25 0.00 44.21 2.59
159 160 9.023962 ACACCAAGTGATTTGTTGTAATATGAT 57.976 29.630 0.96 0.00 40.20 2.45
160 161 8.402798 ACACCAAGTGATTTGTTGTAATATGA 57.597 30.769 0.96 0.00 40.20 2.15
161 162 8.914654 CAACACCAAGTGATTTGTTGTAATATG 58.085 33.333 0.96 0.00 40.99 1.78
162 163 8.087750 CCAACACCAAGTGATTTGTTGTAATAT 58.912 33.333 11.26 0.00 40.99 1.28
163 164 7.285629 TCCAACACCAAGTGATTTGTTGTAATA 59.714 33.333 11.26 0.00 40.99 0.98
164 165 6.097554 TCCAACACCAAGTGATTTGTTGTAAT 59.902 34.615 11.26 0.00 40.99 1.89
165 166 5.419155 TCCAACACCAAGTGATTTGTTGTAA 59.581 36.000 11.26 0.00 40.99 2.41
166 167 4.950475 TCCAACACCAAGTGATTTGTTGTA 59.050 37.500 11.26 0.00 40.99 2.41
167 168 3.766591 TCCAACACCAAGTGATTTGTTGT 59.233 39.130 11.26 0.00 43.34 3.32
168 169 4.111916 GTCCAACACCAAGTGATTTGTTG 58.888 43.478 0.96 6.37 45.52 3.33
169 170 4.023291 AGTCCAACACCAAGTGATTTGTT 58.977 39.130 0.96 0.00 36.96 2.83
170 171 3.631250 AGTCCAACACCAAGTGATTTGT 58.369 40.909 0.96 0.00 36.96 2.83
171 172 3.631686 TGAGTCCAACACCAAGTGATTTG 59.368 43.478 0.96 0.00 36.96 2.32
172 173 3.897239 TGAGTCCAACACCAAGTGATTT 58.103 40.909 0.96 0.00 36.96 2.17
173 174 3.576078 TGAGTCCAACACCAAGTGATT 57.424 42.857 0.96 0.00 36.96 2.57
174 175 3.795688 ATGAGTCCAACACCAAGTGAT 57.204 42.857 0.96 0.00 36.96 3.06
175 176 4.041567 ACATATGAGTCCAACACCAAGTGA 59.958 41.667 10.38 0.00 36.96 3.41
176 177 4.326826 ACATATGAGTCCAACACCAAGTG 58.673 43.478 10.38 0.00 39.75 3.16
177 178 4.640771 ACATATGAGTCCAACACCAAGT 57.359 40.909 10.38 0.00 0.00 3.16
178 179 7.630242 AATTACATATGAGTCCAACACCAAG 57.370 36.000 10.38 0.00 0.00 3.61
179 180 8.415950 AAAATTACATATGAGTCCAACACCAA 57.584 30.769 10.38 0.00 0.00 3.67
180 181 8.415950 AAAAATTACATATGAGTCCAACACCA 57.584 30.769 10.38 0.00 0.00 4.17
184 185 9.965824 CCCATAAAAATTACATATGAGTCCAAC 57.034 33.333 10.38 0.00 30.32 3.77
185 186 8.637986 GCCCATAAAAATTACATATGAGTCCAA 58.362 33.333 10.38 0.00 30.32 3.53
186 187 7.782168 TGCCCATAAAAATTACATATGAGTCCA 59.218 33.333 10.38 0.00 30.32 4.02
187 188 8.177119 TGCCCATAAAAATTACATATGAGTCC 57.823 34.615 10.38 0.00 30.32 3.85
188 189 9.630098 CATGCCCATAAAAATTACATATGAGTC 57.370 33.333 10.38 0.00 30.32 3.36
189 190 9.365906 TCATGCCCATAAAAATTACATATGAGT 57.634 29.630 10.38 0.00 30.32 3.41
192 193 9.985730 ACTTCATGCCCATAAAAATTACATATG 57.014 29.630 0.00 0.00 0.00 1.78
194 195 9.194972 TGACTTCATGCCCATAAAAATTACATA 57.805 29.630 0.00 0.00 0.00 2.29
195 196 7.981225 GTGACTTCATGCCCATAAAAATTACAT 59.019 33.333 0.00 0.00 0.00 2.29
196 197 7.178274 AGTGACTTCATGCCCATAAAAATTACA 59.822 33.333 0.00 0.00 0.00 2.41
197 198 7.547227 AGTGACTTCATGCCCATAAAAATTAC 58.453 34.615 0.00 0.00 0.00 1.89
198 199 7.615365 AGAGTGACTTCATGCCCATAAAAATTA 59.385 33.333 0.00 0.00 0.00 1.40
199 200 6.438425 AGAGTGACTTCATGCCCATAAAAATT 59.562 34.615 0.00 0.00 0.00 1.82
200 201 5.954150 AGAGTGACTTCATGCCCATAAAAAT 59.046 36.000 0.00 0.00 0.00 1.82
201 202 5.324409 AGAGTGACTTCATGCCCATAAAAA 58.676 37.500 0.00 0.00 0.00 1.94
202 203 4.922206 AGAGTGACTTCATGCCCATAAAA 58.078 39.130 0.00 0.00 0.00 1.52
203 204 4.574674 AGAGTGACTTCATGCCCATAAA 57.425 40.909 0.00 0.00 0.00 1.40
204 205 4.574674 AAGAGTGACTTCATGCCCATAA 57.425 40.909 0.00 0.00 32.91 1.90
205 206 4.517285 GAAAGAGTGACTTCATGCCCATA 58.483 43.478 0.00 0.00 37.93 2.74
206 207 3.350833 GAAAGAGTGACTTCATGCCCAT 58.649 45.455 0.00 0.00 37.93 4.00
207 208 2.783135 GAAAGAGTGACTTCATGCCCA 58.217 47.619 0.00 0.00 37.93 5.36
208 209 1.734465 CGAAAGAGTGACTTCATGCCC 59.266 52.381 0.00 0.00 37.93 5.36
209 210 2.688507 TCGAAAGAGTGACTTCATGCC 58.311 47.619 0.00 0.00 37.93 4.40
222 223 3.136763 ACAGTCGTCAGTACTCGAAAGA 58.863 45.455 8.12 3.84 37.81 2.52
223 224 3.539431 ACAGTCGTCAGTACTCGAAAG 57.461 47.619 8.12 6.76 37.81 2.62
224 225 3.624900 CAACAGTCGTCAGTACTCGAAA 58.375 45.455 8.12 0.00 37.81 3.46
225 226 2.603892 GCAACAGTCGTCAGTACTCGAA 60.604 50.000 8.12 0.00 37.81 3.71
226 227 1.069432 GCAACAGTCGTCAGTACTCGA 60.069 52.381 2.76 2.76 0.00 4.04
227 228 1.328439 GCAACAGTCGTCAGTACTCG 58.672 55.000 0.00 0.00 0.00 4.18
228 229 2.417339 TGCAACAGTCGTCAGTACTC 57.583 50.000 0.00 0.00 0.00 2.59
229 230 2.470821 GTTGCAACAGTCGTCAGTACT 58.529 47.619 24.52 0.00 0.00 2.73
230 231 1.189446 CGTTGCAACAGTCGTCAGTAC 59.811 52.381 28.01 0.00 0.00 2.73
231 232 1.202325 ACGTTGCAACAGTCGTCAGTA 60.202 47.619 28.01 0.00 30.71 2.74
232 233 0.459585 ACGTTGCAACAGTCGTCAGT 60.460 50.000 28.01 12.81 30.71 3.41
233 234 0.650512 AACGTTGCAACAGTCGTCAG 59.349 50.000 28.01 12.18 35.49 3.51
234 235 1.080298 AAACGTTGCAACAGTCGTCA 58.920 45.000 28.01 0.00 35.49 4.35
235 236 1.061421 TCAAACGTTGCAACAGTCGTC 59.939 47.619 28.01 0.44 35.49 4.20
236 237 1.080298 TCAAACGTTGCAACAGTCGT 58.920 45.000 28.01 17.63 38.15 4.34
237 238 2.286125 TGATCAAACGTTGCAACAGTCG 60.286 45.455 28.01 16.96 0.00 4.18
238 239 3.332761 TGATCAAACGTTGCAACAGTC 57.667 42.857 28.01 15.51 0.00 3.51
239 240 3.631144 CATGATCAAACGTTGCAACAGT 58.369 40.909 28.01 22.20 0.00 3.55
240 241 2.406024 GCATGATCAAACGTTGCAACAG 59.594 45.455 28.01 21.60 0.00 3.16
241 242 2.392821 GCATGATCAAACGTTGCAACA 58.607 42.857 28.01 9.66 0.00 3.33
242 243 1.383080 CGCATGATCAAACGTTGCAAC 59.617 47.619 19.89 19.89 0.00 4.17
243 244 1.001924 ACGCATGATCAAACGTTGCAA 60.002 42.857 17.66 0.00 34.62 4.08
244 245 0.590682 ACGCATGATCAAACGTTGCA 59.409 45.000 17.66 0.00 34.62 4.08
245 246 0.976963 CACGCATGATCAAACGTTGC 59.023 50.000 20.00 14.29 36.45 4.17
246 247 2.096268 ACTCACGCATGATCAAACGTTG 60.096 45.455 20.00 17.48 36.45 4.10
247 248 2.143122 ACTCACGCATGATCAAACGTT 58.857 42.857 20.00 0.00 36.45 3.99
248 249 1.795768 ACTCACGCATGATCAAACGT 58.204 45.000 17.66 17.66 39.78 3.99
249 250 2.880822 AACTCACGCATGATCAAACG 57.119 45.000 16.52 16.52 33.22 3.60
250 251 4.661993 TGTAACTCACGCATGATCAAAC 57.338 40.909 0.00 0.00 33.22 2.93
251 252 4.754618 ACTTGTAACTCACGCATGATCAAA 59.245 37.500 0.00 0.00 33.22 2.69
252 253 4.314961 ACTTGTAACTCACGCATGATCAA 58.685 39.130 0.00 0.00 33.22 2.57
253 254 3.925379 ACTTGTAACTCACGCATGATCA 58.075 40.909 0.00 0.00 33.22 2.92
254 255 4.627467 AGAACTTGTAACTCACGCATGATC 59.373 41.667 0.00 0.00 33.22 2.92
255 256 4.569943 AGAACTTGTAACTCACGCATGAT 58.430 39.130 0.00 0.00 33.22 2.45
256 257 3.990092 AGAACTTGTAACTCACGCATGA 58.010 40.909 0.00 0.00 0.00 3.07
257 258 4.732285 AAGAACTTGTAACTCACGCATG 57.268 40.909 0.00 0.00 0.00 4.06
258 259 5.527582 AGAAAAGAACTTGTAACTCACGCAT 59.472 36.000 0.00 0.00 0.00 4.73
259 260 4.873827 AGAAAAGAACTTGTAACTCACGCA 59.126 37.500 0.00 0.00 0.00 5.24
260 261 5.405331 AGAAAAGAACTTGTAACTCACGC 57.595 39.130 0.00 0.00 0.00 5.34
261 262 5.657499 CGAGAAAAGAACTTGTAACTCACG 58.343 41.667 0.00 0.00 0.00 4.35
262 263 5.234543 AGCGAGAAAAGAACTTGTAACTCAC 59.765 40.000 0.00 0.00 0.00 3.51
263 264 5.357257 AGCGAGAAAAGAACTTGTAACTCA 58.643 37.500 0.00 0.00 0.00 3.41
264 265 5.908916 AGCGAGAAAAGAACTTGTAACTC 57.091 39.130 0.00 0.00 0.00 3.01
265 266 7.781548 TTTAGCGAGAAAAGAACTTGTAACT 57.218 32.000 0.00 0.00 0.00 2.24
266 267 8.731326 GTTTTTAGCGAGAAAAGAACTTGTAAC 58.269 33.333 0.00 0.00 30.30 2.50
267 268 7.911727 GGTTTTTAGCGAGAAAAGAACTTGTAA 59.088 33.333 0.00 0.00 30.30 2.41
268 269 7.412063 GGTTTTTAGCGAGAAAAGAACTTGTA 58.588 34.615 0.00 0.00 30.30 2.41
269 270 6.263344 GGTTTTTAGCGAGAAAAGAACTTGT 58.737 36.000 0.00 0.00 30.30 3.16
270 271 5.395486 CGGTTTTTAGCGAGAAAAGAACTTG 59.605 40.000 0.00 0.00 30.30 3.16
271 272 5.065602 ACGGTTTTTAGCGAGAAAAGAACTT 59.934 36.000 3.62 0.00 30.30 2.66
272 273 4.573607 ACGGTTTTTAGCGAGAAAAGAACT 59.426 37.500 3.62 0.00 30.30 3.01
273 274 4.840911 ACGGTTTTTAGCGAGAAAAGAAC 58.159 39.130 3.62 0.00 30.30 3.01
274 275 5.163733 ACAACGGTTTTTAGCGAGAAAAGAA 60.164 36.000 3.62 0.00 30.30 2.52
275 276 4.333372 ACAACGGTTTTTAGCGAGAAAAGA 59.667 37.500 3.62 0.00 30.30 2.52
276 277 4.594136 ACAACGGTTTTTAGCGAGAAAAG 58.406 39.130 3.62 0.00 30.30 2.27
277 278 4.094590 TGACAACGGTTTTTAGCGAGAAAA 59.905 37.500 3.62 0.00 0.00 2.29
278 279 3.622163 TGACAACGGTTTTTAGCGAGAAA 59.378 39.130 3.62 0.00 0.00 2.52
279 280 3.001533 GTGACAACGGTTTTTAGCGAGAA 59.998 43.478 3.62 0.00 0.00 2.87
280 281 2.540931 GTGACAACGGTTTTTAGCGAGA 59.459 45.455 3.62 0.00 0.00 4.04
281 282 2.542595 AGTGACAACGGTTTTTAGCGAG 59.457 45.455 3.62 0.00 0.00 5.03
282 283 2.553086 AGTGACAACGGTTTTTAGCGA 58.447 42.857 3.62 0.00 0.00 4.93
283 284 3.033185 CAAGTGACAACGGTTTTTAGCG 58.967 45.455 0.00 0.00 0.00 4.26
284 285 3.065648 TCCAAGTGACAACGGTTTTTAGC 59.934 43.478 0.00 0.00 0.00 3.09
285 286 4.334481 ACTCCAAGTGACAACGGTTTTTAG 59.666 41.667 0.00 0.00 0.00 1.85
286 287 4.263435 ACTCCAAGTGACAACGGTTTTTA 58.737 39.130 0.00 0.00 0.00 1.52
287 288 3.086282 ACTCCAAGTGACAACGGTTTTT 58.914 40.909 0.00 0.00 0.00 1.94
288 289 2.718563 ACTCCAAGTGACAACGGTTTT 58.281 42.857 0.00 0.00 0.00 2.43
289 290 2.413310 ACTCCAAGTGACAACGGTTT 57.587 45.000 0.00 0.00 0.00 3.27
299 300 8.673400 GACCCCGTCATATATCACTCCAAGTG 62.673 50.000 0.57 0.57 38.78 3.16
300 301 3.578716 CCCCGTCATATATCACTCCAAGT 59.421 47.826 0.00 0.00 0.00 3.16
301 302 3.578716 ACCCCGTCATATATCACTCCAAG 59.421 47.826 0.00 0.00 0.00 3.61
302 303 3.576982 GACCCCGTCATATATCACTCCAA 59.423 47.826 0.00 0.00 32.09 3.53
303 304 3.162666 GACCCCGTCATATATCACTCCA 58.837 50.000 0.00 0.00 32.09 3.86
304 305 3.432378 AGACCCCGTCATATATCACTCC 58.568 50.000 0.00 0.00 34.60 3.85
305 306 4.079970 TGAGACCCCGTCATATATCACTC 58.920 47.826 0.00 0.00 34.60 3.51
306 307 4.114015 TGAGACCCCGTCATATATCACT 57.886 45.455 0.00 0.00 34.60 3.41
307 308 5.171476 CAATGAGACCCCGTCATATATCAC 58.829 45.833 0.00 0.00 33.34 3.06
308 309 4.222810 CCAATGAGACCCCGTCATATATCA 59.777 45.833 0.00 0.00 33.34 2.15
309 310 4.466370 TCCAATGAGACCCCGTCATATATC 59.534 45.833 0.00 0.00 33.34 1.63
310 311 4.425772 TCCAATGAGACCCCGTCATATAT 58.574 43.478 0.00 0.00 33.34 0.86
311 312 3.832490 CTCCAATGAGACCCCGTCATATA 59.168 47.826 0.00 0.00 41.42 0.86
312 313 2.634940 CTCCAATGAGACCCCGTCATAT 59.365 50.000 0.00 0.00 41.42 1.78
313 314 2.039418 CTCCAATGAGACCCCGTCATA 58.961 52.381 0.00 0.00 41.42 2.15
314 315 0.833287 CTCCAATGAGACCCCGTCAT 59.167 55.000 0.00 0.00 41.42 3.06
315 316 0.544357 ACTCCAATGAGACCCCGTCA 60.544 55.000 0.00 0.00 41.42 4.35
316 317 0.613777 AACTCCAATGAGACCCCGTC 59.386 55.000 0.00 0.00 41.42 4.79
317 318 1.064825 AAACTCCAATGAGACCCCGT 58.935 50.000 0.00 0.00 41.42 5.28
318 319 3.134804 AGATAAACTCCAATGAGACCCCG 59.865 47.826 0.00 0.00 41.42 5.73
319 320 4.779993 AGATAAACTCCAATGAGACCCC 57.220 45.455 0.00 0.00 41.42 4.95
320 321 6.487299 AGTAGATAAACTCCAATGAGACCC 57.513 41.667 0.00 0.00 41.42 4.46
321 322 9.886132 TTTTAGTAGATAAACTCCAATGAGACC 57.114 33.333 0.00 0.00 41.42 3.85
347 348 9.959721 AGTATTCATACTTACCAGTGAACATTT 57.040 29.630 0.00 0.00 40.54 2.32
348 349 9.601217 GAGTATTCATACTTACCAGTGAACATT 57.399 33.333 0.97 0.00 43.27 2.71
349 350 8.758829 TGAGTATTCATACTTACCAGTGAACAT 58.241 33.333 0.97 0.00 43.27 2.71
350 351 8.129496 TGAGTATTCATACTTACCAGTGAACA 57.871 34.615 0.97 0.00 43.27 3.18
351 352 8.997621 TTGAGTATTCATACTTACCAGTGAAC 57.002 34.615 0.97 0.00 43.27 3.18
376 377 0.671796 GTGTTGCTACGGGCCTTTTT 59.328 50.000 0.84 0.00 40.92 1.94
377 378 0.466555 TGTGTTGCTACGGGCCTTTT 60.467 50.000 0.84 0.00 40.92 2.27
378 379 1.149627 TGTGTTGCTACGGGCCTTT 59.850 52.632 0.84 0.00 40.92 3.11
379 380 1.599797 GTGTGTTGCTACGGGCCTT 60.600 57.895 0.84 0.00 40.92 4.35
380 381 2.032071 GTGTGTTGCTACGGGCCT 59.968 61.111 0.84 0.00 40.92 5.19
381 382 3.419759 CGTGTGTTGCTACGGGCC 61.420 66.667 0.00 0.00 40.92 5.80
385 386 1.573829 AATGCCCGTGTGTTGCTACG 61.574 55.000 0.00 0.00 39.83 3.51
386 387 0.168128 GAATGCCCGTGTGTTGCTAC 59.832 55.000 0.00 0.00 0.00 3.58
387 388 0.036164 AGAATGCCCGTGTGTTGCTA 59.964 50.000 0.00 0.00 0.00 3.49
388 389 0.036164 TAGAATGCCCGTGTGTTGCT 59.964 50.000 0.00 0.00 0.00 3.91
389 390 0.168128 GTAGAATGCCCGTGTGTTGC 59.832 55.000 0.00 0.00 0.00 4.17
390 391 1.808411 AGTAGAATGCCCGTGTGTTG 58.192 50.000 0.00 0.00 0.00 3.33
391 392 2.565834 ACTAGTAGAATGCCCGTGTGTT 59.434 45.455 3.59 0.00 0.00 3.32
392 393 2.176889 ACTAGTAGAATGCCCGTGTGT 58.823 47.619 3.59 0.00 0.00 3.72
393 394 2.961526 ACTAGTAGAATGCCCGTGTG 57.038 50.000 3.59 0.00 0.00 3.82
394 395 4.275810 TCTAACTAGTAGAATGCCCGTGT 58.724 43.478 3.59 0.00 35.81 4.49
395 396 4.913335 TCTAACTAGTAGAATGCCCGTG 57.087 45.455 3.59 0.00 35.81 4.94
396 397 7.592885 TTTATCTAACTAGTAGAATGCCCGT 57.407 36.000 3.59 0.00 42.24 5.28
397 398 8.882415 TTTTTATCTAACTAGTAGAATGCCCG 57.118 34.615 3.59 0.00 42.24 6.13
406 407 9.938280 ACACTGCACATTTTTATCTAACTAGTA 57.062 29.630 0.00 0.00 0.00 1.82
407 408 8.848474 ACACTGCACATTTTTATCTAACTAGT 57.152 30.769 0.00 0.00 0.00 2.57
410 411 8.850156 AGAAACACTGCACATTTTTATCTAACT 58.150 29.630 0.00 0.00 0.00 2.24
411 412 9.463443 AAGAAACACTGCACATTTTTATCTAAC 57.537 29.630 0.00 0.00 0.00 2.34
414 415 9.066892 TCTAAGAAACACTGCACATTTTTATCT 57.933 29.630 0.00 0.00 0.00 1.98
415 416 9.677567 TTCTAAGAAACACTGCACATTTTTATC 57.322 29.630 0.00 0.00 0.00 1.75
417 418 9.862371 TTTTCTAAGAAACACTGCACATTTTTA 57.138 25.926 0.00 0.00 0.00 1.52
418 419 8.655970 GTTTTCTAAGAAACACTGCACATTTTT 58.344 29.630 0.00 0.00 38.92 1.94
419 420 7.816995 TGTTTTCTAAGAAACACTGCACATTTT 59.183 29.630 0.19 0.00 42.73 1.82
420 421 7.319646 TGTTTTCTAAGAAACACTGCACATTT 58.680 30.769 0.19 0.00 42.73 2.32
421 422 6.862209 TGTTTTCTAAGAAACACTGCACATT 58.138 32.000 0.19 0.00 42.73 2.71
422 423 6.449635 TGTTTTCTAAGAAACACTGCACAT 57.550 33.333 0.19 0.00 42.73 3.21
423 424 5.888691 TGTTTTCTAAGAAACACTGCACA 57.111 34.783 0.19 0.00 42.73 4.57
495 496 9.005777 TGAAAAGTGGAAATAGCGTAAGTTTAT 57.994 29.630 0.00 0.00 41.68 1.40
496 497 8.380743 TGAAAAGTGGAAATAGCGTAAGTTTA 57.619 30.769 0.00 0.00 41.68 2.01
497 498 7.227910 TCTGAAAAGTGGAAATAGCGTAAGTTT 59.772 33.333 0.00 0.00 41.68 2.66
498 499 6.708949 TCTGAAAAGTGGAAATAGCGTAAGTT 59.291 34.615 0.00 0.00 41.68 2.66
499 500 6.228258 TCTGAAAAGTGGAAATAGCGTAAGT 58.772 36.000 0.00 0.00 41.68 2.24
500 501 6.721571 TCTGAAAAGTGGAAATAGCGTAAG 57.278 37.500 0.00 0.00 43.44 2.34
501 502 6.347079 CGTTCTGAAAAGTGGAAATAGCGTAA 60.347 38.462 0.00 0.00 0.00 3.18
502 503 5.119588 CGTTCTGAAAAGTGGAAATAGCGTA 59.880 40.000 0.00 0.00 0.00 4.42
503 504 4.084013 CGTTCTGAAAAGTGGAAATAGCGT 60.084 41.667 0.00 0.00 0.00 5.07
504 505 4.394795 CGTTCTGAAAAGTGGAAATAGCG 58.605 43.478 0.00 0.00 0.00 4.26
505 506 4.083271 AGCGTTCTGAAAAGTGGAAATAGC 60.083 41.667 0.00 0.00 0.00 2.97
506 507 5.613358 AGCGTTCTGAAAAGTGGAAATAG 57.387 39.130 0.00 0.00 0.00 1.73
507 508 7.681939 AATAGCGTTCTGAAAAGTGGAAATA 57.318 32.000 0.00 0.00 0.00 1.40
508 509 6.575162 AATAGCGTTCTGAAAAGTGGAAAT 57.425 33.333 0.00 0.00 0.00 2.17
509 510 6.385649 AAATAGCGTTCTGAAAAGTGGAAA 57.614 33.333 0.00 0.00 0.00 3.13
510 511 6.038825 TGAAAATAGCGTTCTGAAAAGTGGAA 59.961 34.615 0.00 0.00 0.00 3.53
511 512 5.529430 TGAAAATAGCGTTCTGAAAAGTGGA 59.471 36.000 0.00 0.00 0.00 4.02
512 513 5.757886 TGAAAATAGCGTTCTGAAAAGTGG 58.242 37.500 0.00 0.00 0.00 4.00
513 514 7.305993 GGTTTGAAAATAGCGTTCTGAAAAGTG 60.306 37.037 0.00 0.00 0.00 3.16
514 515 6.695713 GGTTTGAAAATAGCGTTCTGAAAAGT 59.304 34.615 0.00 0.00 0.00 2.66
515 516 6.918022 AGGTTTGAAAATAGCGTTCTGAAAAG 59.082 34.615 0.00 0.00 0.00 2.27
516 517 6.801575 AGGTTTGAAAATAGCGTTCTGAAAA 58.198 32.000 0.00 0.00 0.00 2.29
517 518 6.385649 AGGTTTGAAAATAGCGTTCTGAAA 57.614 33.333 0.00 0.00 0.00 2.69
518 519 6.205784 CAAGGTTTGAAAATAGCGTTCTGAA 58.794 36.000 0.00 0.00 0.00 3.02
519 520 5.278266 CCAAGGTTTGAAAATAGCGTTCTGA 60.278 40.000 0.00 0.00 0.00 3.27
520 521 4.917415 CCAAGGTTTGAAAATAGCGTTCTG 59.083 41.667 0.00 0.00 0.00 3.02
521 522 4.825085 TCCAAGGTTTGAAAATAGCGTTCT 59.175 37.500 0.00 0.00 0.00 3.01
522 523 5.116069 TCCAAGGTTTGAAAATAGCGTTC 57.884 39.130 0.00 0.00 0.00 3.95
539 540 1.338200 CCTTGACTCCGGTCTTCCAAG 60.338 57.143 0.00 9.24 42.54 3.61
589 590 0.850856 CGGGAAATTAGTAGCGTCGC 59.149 55.000 9.80 9.80 0.00 5.19
591 592 3.375642 GGTACGGGAAATTAGTAGCGTC 58.624 50.000 0.00 0.00 0.00 5.19
647 649 3.103289 TAAGCTGTGTCGCGTGCG 61.103 61.111 5.77 8.14 41.35 5.34
648 650 1.626654 ATGTAAGCTGTGTCGCGTGC 61.627 55.000 5.77 4.37 34.40 5.34
649 651 0.366871 GATGTAAGCTGTGTCGCGTG 59.633 55.000 5.77 0.00 34.40 5.34
650 652 0.736325 GGATGTAAGCTGTGTCGCGT 60.736 55.000 5.77 0.00 34.40 6.01
672 674 1.372004 TGTCGGTCGGTTGTTAGCG 60.372 57.895 0.00 0.00 46.15 4.26
722 724 2.384653 TTTCCCACCGTGCGATGTGA 62.385 55.000 0.00 0.00 34.37 3.58
730 732 3.365265 GCAGGCTTTCCCACCGTG 61.365 66.667 0.00 0.00 35.39 4.94
752 754 1.020437 GCCATGGCTTAGCTTGAGAC 58.980 55.000 29.98 0.00 38.26 3.36
793 795 2.100916 TCGATTCTAAGCTACCACCTGC 59.899 50.000 0.00 0.00 0.00 4.85
798 800 2.223735 CCGCTTCGATTCTAAGCTACCA 60.224 50.000 17.66 0.00 45.73 3.25
903 905 1.749638 TTCGGAGAGGGAGAGCGAC 60.750 63.158 0.00 0.00 38.43 5.19
912 914 3.148279 CGGAGGGGTTCGGAGAGG 61.148 72.222 0.00 0.00 38.43 3.69
971 973 2.685380 CCTCCGGAGCAGGAACCT 60.685 66.667 26.87 0.00 40.25 3.50
974 976 2.607750 AAGCCTCCGGAGCAGGAA 60.608 61.111 26.87 0.00 40.25 3.36
1145 1186 4.778842 ATTCGTTCAGAATCGGAAATCG 57.221 40.909 0.00 0.00 45.95 3.34
1318 1359 4.499183 AGGAAGCAAACTAGAATCGTCAG 58.501 43.478 0.00 0.00 0.00 3.51
1327 1368 2.040412 AGGTGGGAAGGAAGCAAACTAG 59.960 50.000 0.00 0.00 0.00 2.57
1328 1369 2.039879 GAGGTGGGAAGGAAGCAAACTA 59.960 50.000 0.00 0.00 0.00 2.24
1329 1370 0.853530 AGGTGGGAAGGAAGCAAACT 59.146 50.000 0.00 0.00 0.00 2.66
1330 1371 1.202940 AGAGGTGGGAAGGAAGCAAAC 60.203 52.381 0.00 0.00 0.00 2.93
1331 1372 1.073923 GAGAGGTGGGAAGGAAGCAAA 59.926 52.381 0.00 0.00 0.00 3.68
1332 1373 0.693049 GAGAGGTGGGAAGGAAGCAA 59.307 55.000 0.00 0.00 0.00 3.91
1333 1374 1.544825 CGAGAGGTGGGAAGGAAGCA 61.545 60.000 0.00 0.00 0.00 3.91
1334 1375 1.219393 CGAGAGGTGGGAAGGAAGC 59.781 63.158 0.00 0.00 0.00 3.86
1376 1430 3.698040 GACATCAAAGGCAACATCATCCT 59.302 43.478 0.00 0.00 41.41 3.24
1421 1483 1.063488 GTCGCTGCAAAACACCGTT 59.937 52.632 0.00 0.00 0.00 4.44
1512 2248 4.394712 AACTTCTCCTGCCCGGCG 62.395 66.667 4.58 0.00 0.00 6.46
1518 2254 2.035442 GCCACCGAACTTCTCCTGC 61.035 63.158 0.00 0.00 0.00 4.85
1574 2310 6.783272 TCAACGTATATAGTTGCGACTAGCTG 60.783 42.308 18.58 7.07 46.06 4.24
1594 2330 6.648310 AGCATCATCTAACCATAGATTCAACG 59.352 38.462 0.00 0.00 44.73 4.10
1662 2407 0.604578 CCCCATCAACTTTGCAGGTG 59.395 55.000 0.00 0.00 39.39 4.00
1732 2477 5.726397 TGCAGTACTAATCGGTGTAAATGT 58.274 37.500 0.00 0.00 0.00 2.71
1737 2482 2.100252 GCCTGCAGTACTAATCGGTGTA 59.900 50.000 13.81 0.00 0.00 2.90
1805 2550 4.598022 TGCAAGTGATCAATTGGATACCA 58.402 39.130 30.62 19.44 36.94 3.25
1808 2553 8.407832 CAACTAATGCAAGTGATCAATTGGATA 58.592 33.333 33.27 22.54 44.39 2.59
1849 2594 3.834231 AGAATTTTGGCCTGCAGTAATGT 59.166 39.130 13.81 0.00 0.00 2.71
1851 2596 4.527816 TCAAGAATTTTGGCCTGCAGTAAT 59.472 37.500 13.81 1.60 0.00 1.89
1852 2597 3.894427 TCAAGAATTTTGGCCTGCAGTAA 59.106 39.130 13.81 1.99 0.00 2.24
1853 2598 3.495331 TCAAGAATTTTGGCCTGCAGTA 58.505 40.909 13.81 0.00 0.00 2.74
1854 2599 2.318908 TCAAGAATTTTGGCCTGCAGT 58.681 42.857 13.81 0.00 0.00 4.40
1855 2600 3.604875 ATCAAGAATTTTGGCCTGCAG 57.395 42.857 6.78 6.78 0.00 4.41
1856 2601 3.324268 TGAATCAAGAATTTTGGCCTGCA 59.676 39.130 3.32 0.00 0.00 4.41
1857 2602 3.929094 TGAATCAAGAATTTTGGCCTGC 58.071 40.909 3.32 0.00 0.00 4.85
1858 2603 5.047519 ACTCTGAATCAAGAATTTTGGCCTG 60.048 40.000 3.32 0.00 0.00 4.85
1859 2604 5.082425 ACTCTGAATCAAGAATTTTGGCCT 58.918 37.500 3.32 0.00 0.00 5.19
1860 2605 5.397142 ACTCTGAATCAAGAATTTTGGCC 57.603 39.130 0.00 0.00 0.00 5.36
1867 2612 8.743714 GGTATTCCAAAACTCTGAATCAAGAAT 58.256 33.333 0.00 0.00 31.55 2.40
1913 2658 8.709386 AAACATCTGAACTTACTAGTATGCAG 57.291 34.615 14.11 9.74 33.17 4.41
1939 2684 1.376683 GCACATGGCTCACCCGTTA 60.377 57.895 0.00 0.00 40.25 3.18
2001 2746 6.269769 TGAAGAAGGCCAAACAATTAATTCCT 59.730 34.615 5.01 0.00 0.00 3.36
2251 2999 2.021039 CGCACCGGCCAAAACAATG 61.021 57.895 0.00 0.00 36.38 2.82
2255 3003 3.857109 AATGCGCACCGGCCAAAAC 62.857 57.895 14.90 0.00 36.38 2.43
2263 3011 2.174107 CACTGTCAATGCGCACCG 59.826 61.111 14.90 6.95 0.00 4.94
2325 3073 3.001533 TGACATCGAACATGATGATTGCG 59.998 43.478 10.45 0.00 46.98 4.85
2453 3201 4.346709 TGTCAGGTCAATTCAGGACAACTA 59.653 41.667 0.00 0.00 37.00 2.24
2470 3218 8.970859 AAGGATAATTTAAGAGATGTGTCAGG 57.029 34.615 0.00 0.00 0.00 3.86
2485 3233 6.013466 ACCCTGATTGCAACAAAGGATAATTT 60.013 34.615 20.30 0.00 0.00 1.82
2592 3340 2.634940 CTGGAGGTTCTTCTTCCTGTGA 59.365 50.000 0.00 0.00 42.05 3.58
2735 3483 3.935828 GGAAAGGAGAATCTGTGTAGCAC 59.064 47.826 0.00 0.00 33.73 4.40
2761 3509 8.373048 TGAGCATATAACGTTACCCTATTTTG 57.627 34.615 10.81 0.67 0.00 2.44
2823 3571 0.745845 GAGCGTCATGTCCCTGCAAT 60.746 55.000 0.00 0.00 0.00 3.56
2839 3587 3.398353 CTCCTCGACGAACCGGAGC 62.398 68.421 9.46 0.00 36.91 4.70
2899 3647 2.401583 TGTTCACTCACTGTTGCTGT 57.598 45.000 0.00 0.00 0.00 4.40
2969 3717 2.485426 AGATCAACGCAACATCACAAGG 59.515 45.455 0.00 0.00 0.00 3.61
3111 3859 4.191544 TGCTGCTATTAAACTAGGCACAG 58.808 43.478 0.00 0.00 0.00 3.66
3112 3860 4.214986 TGCTGCTATTAAACTAGGCACA 57.785 40.909 0.00 0.00 0.00 4.57
3235 3983 4.752101 CAGACCAACTACCACTGAGAAAAG 59.248 45.833 0.00 0.00 0.00 2.27
3254 4002 5.107143 GCACTCAGACAAAGAAATCTCAGAC 60.107 44.000 0.00 0.00 0.00 3.51
3272 4020 2.031258 TCGGTTTTGACAAGCACTCA 57.969 45.000 0.00 0.00 0.00 3.41
3322 4070 5.762179 AATGAAGACCACACTCCAGAATA 57.238 39.130 0.00 0.00 0.00 1.75
3376 4152 4.524316 TCATGTAATGCAAAGCAAGCTT 57.476 36.364 0.59 0.59 46.21 3.74
3460 4236 6.432581 AGGGATGTGACAGTACTAGTGAATA 58.567 40.000 5.39 0.00 0.00 1.75
3619 4400 6.013898 TGAACATTTATGAAGGGCATTTTGGA 60.014 34.615 0.00 0.00 38.44 3.53
3899 4680 8.202745 TCTCTCTCTTTTCTTGTTTCAGTTTC 57.797 34.615 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.