Multiple sequence alignment - TraesCS7B01G253000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G253000 chr7B 100.000 5438 0 0 1 5438 466278349 466283786 0.000000e+00 10043
1 TraesCS7B01G253000 chr7B 86.193 1282 134 16 3632 4894 466664413 466665670 0.000000e+00 1347
2 TraesCS7B01G253000 chr7B 96.846 539 16 1 4896 5434 466290107 466290644 0.000000e+00 900
3 TraesCS7B01G253000 chr7B 82.238 715 102 23 1551 2252 158042262 158042964 1.300000e-165 593
4 TraesCS7B01G253000 chr7B 84.913 517 42 17 688 1185 466658557 466659056 1.760000e-134 490
5 TraesCS7B01G253000 chr7B 79.856 695 105 25 1 690 440192306 440191642 4.930000e-130 475
6 TraesCS7B01G253000 chr7B 84.131 397 49 8 2566 2954 466663377 466663767 6.650000e-99 372
7 TraesCS7B01G253000 chr7B 83.380 361 52 7 3098 3457 466663901 466664254 1.460000e-85 327
8 TraesCS7B01G253000 chr7B 94.690 113 6 0 1180 1292 466661121 466661233 5.600000e-40 176
9 TraesCS7B01G253000 chr7A 82.419 1877 228 42 3098 4895 547120212 547118359 0.000000e+00 1544
10 TraesCS7B01G253000 chr7A 84.457 534 60 15 2551 3066 547116496 547115968 6.290000e-139 505
11 TraesCS7B01G253000 chr7A 82.321 560 48 19 761 1307 547121501 547120980 6.470000e-119 438
12 TraesCS7B01G253000 chr7A 86.842 342 37 7 2770 3105 547120575 547120236 5.140000e-100 375
13 TraesCS7B01G253000 chr7D 82.086 1870 227 49 3098 4895 448845084 448846917 0.000000e+00 1498
14 TraesCS7B01G253000 chr7D 85.714 609 52 17 697 1292 448843457 448844043 1.290000e-170 610
15 TraesCS7B01G253000 chr7D 84.629 566 70 10 2551 3102 448844495 448845057 1.030000e-151 547
16 TraesCS7B01G253000 chr7D 81.602 674 94 21 1 668 423333999 423333350 1.040000e-146 531
17 TraesCS7B01G253000 chr7D 82.063 630 88 17 3 616 372910570 372909950 1.040000e-141 514
18 TraesCS7B01G253000 chr1B 97.053 543 16 0 4896 5438 57753204 57752662 0.000000e+00 915
19 TraesCS7B01G253000 chr3B 96.324 544 18 2 4896 5438 455107377 455107919 0.000000e+00 893
20 TraesCS7B01G253000 chr3B 96.147 545 17 4 4896 5438 480495055 480494513 0.000000e+00 887
21 TraesCS7B01G253000 chr3B 95.971 546 18 3 4895 5438 735580301 735579758 0.000000e+00 883
22 TraesCS7B01G253000 chr3B 95.956 544 21 1 4896 5438 735573458 735572915 0.000000e+00 881
23 TraesCS7B01G253000 chr3B 84.030 526 64 17 1551 2068 765014885 765014372 6.330000e-134 488
24 TraesCS7B01G253000 chr3B 79.739 153 20 7 1410 1552 45264286 45264135 3.470000e-17 100
25 TraesCS7B01G253000 chr2B 96.317 543 20 0 4896 5438 755002666 755003208 0.000000e+00 893
26 TraesCS7B01G253000 chr2B 78.701 770 128 34 1551 2300 198358705 198359458 1.060000e-131 481
27 TraesCS7B01G253000 chr2B 76.499 617 98 26 2 607 464178123 464178703 5.330000e-75 292
28 TraesCS7B01G253000 chr5B 95.780 545 21 2 4896 5438 524490735 524491279 0.000000e+00 878
29 TraesCS7B01G253000 chr5B 79.764 677 106 22 1551 2207 27808809 27809474 3.840000e-126 462
30 TraesCS7B01G253000 chr5B 77.663 676 133 13 3698 4361 580286115 580286784 3.950000e-106 396
31 TraesCS7B01G253000 chr5B 81.678 453 60 14 1 450 507652854 507652422 6.700000e-94 355
32 TraesCS7B01G253000 chr6B 95.471 552 18 7 4889 5436 678166420 678166968 0.000000e+00 874
33 TraesCS7B01G253000 chr1D 83.137 765 105 20 1550 2304 442918727 442919477 0.000000e+00 676
34 TraesCS7B01G253000 chr1D 81.587 630 96 18 1684 2300 423891283 423891905 2.260000e-138 503
35 TraesCS7B01G253000 chr1D 77.355 499 78 20 11 495 26373769 26373292 4.180000e-66 263
36 TraesCS7B01G253000 chr1D 86.022 93 12 1 1397 1488 217004920 217005012 1.250000e-16 99
37 TraesCS7B01G253000 chr2D 83.073 703 97 17 1 695 355675792 355675104 2.150000e-173 619
38 TraesCS7B01G253000 chr2D 81.230 634 94 16 2 628 625111115 625111730 6.330000e-134 488
39 TraesCS7B01G253000 chr2D 77.559 762 145 22 1551 2297 23176002 23176752 2.330000e-118 436
40 TraesCS7B01G253000 chr2D 78.374 578 98 17 119 690 608486176 608486732 3.120000e-92 350
41 TraesCS7B01G253000 chr2A 82.808 698 112 7 1 695 475869340 475868648 7.740000e-173 617
42 TraesCS7B01G253000 chr2A 81.429 700 97 21 4 675 688409948 688409254 4.790000e-150 542
43 TraesCS7B01G253000 chr2A 81.439 431 63 11 2 431 167945849 167945435 2.430000e-88 337
44 TraesCS7B01G253000 chr6A 80.225 799 116 31 1551 2328 99035160 99034383 3.680000e-156 562
45 TraesCS7B01G253000 chr6D 78.935 864 142 28 1551 2392 82465685 82464840 7.960000e-153 551
46 TraesCS7B01G253000 chr5A 78.313 830 155 18 3669 4477 592619782 592620607 3.760000e-141 512
47 TraesCS7B01G253000 chr5A 79.407 607 87 23 3 598 394263381 394263960 1.420000e-105 394
48 TraesCS7B01G253000 chr5A 76.744 301 50 13 765 1060 592617761 592618046 3.390000e-32 150
49 TraesCS7B01G253000 chr5D 78.213 817 163 12 3669 4477 472994484 472995293 4.860000e-140 508
50 TraesCS7B01G253000 chr5D 79.969 644 104 14 4 627 421371914 421371276 8.310000e-123 451
51 TraesCS7B01G253000 chr5D 77.073 615 89 31 3 602 41889882 41889305 1.900000e-79 307
52 TraesCS7B01G253000 chr3D 79.283 642 87 23 2 628 537167157 537167767 1.820000e-109 407


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G253000 chr7B 466278349 466283786 5437 False 10043.0 10043 100.00000 1 5438 1 chr7B.!!$F2 5437
1 TraesCS7B01G253000 chr7B 466290107 466290644 537 False 900.0 900 96.84600 4896 5434 1 chr7B.!!$F3 538
2 TraesCS7B01G253000 chr7B 158042262 158042964 702 False 593.0 593 82.23800 1551 2252 1 chr7B.!!$F1 701
3 TraesCS7B01G253000 chr7B 466658557 466665670 7113 False 542.4 1347 86.66140 688 4894 5 chr7B.!!$F4 4206
4 TraesCS7B01G253000 chr7B 440191642 440192306 664 True 475.0 475 79.85600 1 690 1 chr7B.!!$R1 689
5 TraesCS7B01G253000 chr7A 547115968 547121501 5533 True 715.5 1544 84.00975 761 4895 4 chr7A.!!$R1 4134
6 TraesCS7B01G253000 chr7D 448843457 448846917 3460 False 885.0 1498 84.14300 697 4895 3 chr7D.!!$F1 4198
7 TraesCS7B01G253000 chr7D 423333350 423333999 649 True 531.0 531 81.60200 1 668 1 chr7D.!!$R2 667
8 TraesCS7B01G253000 chr7D 372909950 372910570 620 True 514.0 514 82.06300 3 616 1 chr7D.!!$R1 613
9 TraesCS7B01G253000 chr1B 57752662 57753204 542 True 915.0 915 97.05300 4896 5438 1 chr1B.!!$R1 542
10 TraesCS7B01G253000 chr3B 455107377 455107919 542 False 893.0 893 96.32400 4896 5438 1 chr3B.!!$F1 542
11 TraesCS7B01G253000 chr3B 480494513 480495055 542 True 887.0 887 96.14700 4896 5438 1 chr3B.!!$R2 542
12 TraesCS7B01G253000 chr3B 735579758 735580301 543 True 883.0 883 95.97100 4895 5438 1 chr3B.!!$R4 543
13 TraesCS7B01G253000 chr3B 735572915 735573458 543 True 881.0 881 95.95600 4896 5438 1 chr3B.!!$R3 542
14 TraesCS7B01G253000 chr3B 765014372 765014885 513 True 488.0 488 84.03000 1551 2068 1 chr3B.!!$R5 517
15 TraesCS7B01G253000 chr2B 755002666 755003208 542 False 893.0 893 96.31700 4896 5438 1 chr2B.!!$F3 542
16 TraesCS7B01G253000 chr2B 198358705 198359458 753 False 481.0 481 78.70100 1551 2300 1 chr2B.!!$F1 749
17 TraesCS7B01G253000 chr2B 464178123 464178703 580 False 292.0 292 76.49900 2 607 1 chr2B.!!$F2 605
18 TraesCS7B01G253000 chr5B 524490735 524491279 544 False 878.0 878 95.78000 4896 5438 1 chr5B.!!$F2 542
19 TraesCS7B01G253000 chr5B 27808809 27809474 665 False 462.0 462 79.76400 1551 2207 1 chr5B.!!$F1 656
20 TraesCS7B01G253000 chr5B 580286115 580286784 669 False 396.0 396 77.66300 3698 4361 1 chr5B.!!$F3 663
21 TraesCS7B01G253000 chr6B 678166420 678166968 548 False 874.0 874 95.47100 4889 5436 1 chr6B.!!$F1 547
22 TraesCS7B01G253000 chr1D 442918727 442919477 750 False 676.0 676 83.13700 1550 2304 1 chr1D.!!$F3 754
23 TraesCS7B01G253000 chr1D 423891283 423891905 622 False 503.0 503 81.58700 1684 2300 1 chr1D.!!$F2 616
24 TraesCS7B01G253000 chr2D 355675104 355675792 688 True 619.0 619 83.07300 1 695 1 chr2D.!!$R1 694
25 TraesCS7B01G253000 chr2D 625111115 625111730 615 False 488.0 488 81.23000 2 628 1 chr2D.!!$F3 626
26 TraesCS7B01G253000 chr2D 23176002 23176752 750 False 436.0 436 77.55900 1551 2297 1 chr2D.!!$F1 746
27 TraesCS7B01G253000 chr2D 608486176 608486732 556 False 350.0 350 78.37400 119 690 1 chr2D.!!$F2 571
28 TraesCS7B01G253000 chr2A 475868648 475869340 692 True 617.0 617 82.80800 1 695 1 chr2A.!!$R2 694
29 TraesCS7B01G253000 chr2A 688409254 688409948 694 True 542.0 542 81.42900 4 675 1 chr2A.!!$R3 671
30 TraesCS7B01G253000 chr6A 99034383 99035160 777 True 562.0 562 80.22500 1551 2328 1 chr6A.!!$R1 777
31 TraesCS7B01G253000 chr6D 82464840 82465685 845 True 551.0 551 78.93500 1551 2392 1 chr6D.!!$R1 841
32 TraesCS7B01G253000 chr5A 394263381 394263960 579 False 394.0 394 79.40700 3 598 1 chr5A.!!$F1 595
33 TraesCS7B01G253000 chr5A 592617761 592620607 2846 False 331.0 512 77.52850 765 4477 2 chr5A.!!$F2 3712
34 TraesCS7B01G253000 chr5D 472994484 472995293 809 False 508.0 508 78.21300 3669 4477 1 chr5D.!!$F1 808
35 TraesCS7B01G253000 chr5D 421371276 421371914 638 True 451.0 451 79.96900 4 627 1 chr5D.!!$R2 623
36 TraesCS7B01G253000 chr5D 41889305 41889882 577 True 307.0 307 77.07300 3 602 1 chr5D.!!$R1 599
37 TraesCS7B01G253000 chr3D 537167157 537167767 610 False 407.0 407 79.28300 2 628 1 chr3D.!!$F1 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 917 0.172578 CGTACATCGCTGACCTCCAA 59.827 55.0 0.00 0.00 0.00 3.53 F
879 965 1.026718 GCGCCATTAGTCTGCCAACT 61.027 55.0 0.00 0.00 0.00 3.16 F
2401 5425 0.918983 TGCTTATTGGCTAGGCAGGT 59.081 50.0 19.32 14.25 37.50 4.00 F
2434 5458 0.603975 AGCACCTCTCAAGTTTCCGC 60.604 55.0 0.00 0.00 0.00 5.54 F
2435 5459 0.603975 GCACCTCTCAAGTTTCCGCT 60.604 55.0 0.00 0.00 0.00 5.52 F
3340 7020 0.748005 CGACCGCTGGGATTTGGATT 60.748 55.0 0.00 0.00 36.97 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2365 5389 0.247419 GCAACTGACACATCGCATCG 60.247 55.0 0.00 0.00 0.00 3.84 R
2415 5439 0.603975 GCGGAAACTTGAGAGGTGCT 60.604 55.0 0.00 0.00 0.00 4.40 R
3676 7421 0.037975 TGGGAAGTTTAGTCCGTCGC 60.038 55.0 0.00 0.00 35.86 5.19 R
3731 7476 0.106967 GGTTGGCCTCCATCTTCTCC 60.107 60.0 3.32 0.00 31.53 3.71 R
3751 7496 0.392998 CCTCAACTGTTGCCGGCTAT 60.393 55.0 29.70 1.49 0.00 2.97 R
4684 8456 0.595588 TTATTGCACACCGCCAACTG 59.404 50.0 0.00 0.00 41.33 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 4.827087 CATCGCTGTCGGGCTGCT 62.827 66.667 9.76 0.00 39.51 4.24
108 114 2.277072 CGGAGCCAGAGGAGGAGA 59.723 66.667 0.00 0.00 0.00 3.71
117 123 0.261696 AGAGGAGGAGAAGGAGGAGC 59.738 60.000 0.00 0.00 0.00 4.70
138 159 2.123640 CGGAGGAGGAGGGGAGAC 60.124 72.222 0.00 0.00 0.00 3.36
148 169 1.611851 AGGGGAGACAGGAGCAGTG 60.612 63.158 0.00 0.00 0.00 3.66
267 305 2.264480 CGGAGTTCATGGTCGCCA 59.736 61.111 1.01 1.01 38.19 5.69
409 448 0.464373 TCAAAGCGGAGATGGATGCC 60.464 55.000 0.00 0.00 0.00 4.40
538 614 7.551262 TGTAGTACGTGGATTTTATCATTTGCT 59.449 33.333 0.00 0.00 0.00 3.91
608 684 5.012893 AGAAGAGCAAATTTAAGGACTGGG 58.987 41.667 0.00 0.00 0.00 4.45
629 705 3.601685 TCACTGCTCGTGGACGCA 61.602 61.111 6.83 0.00 43.94 5.24
658 736 2.113139 CCGTGGGTGTTTGAGGCT 59.887 61.111 0.00 0.00 0.00 4.58
676 754 1.539280 GCTCGGATTTGCCTAGTCCTC 60.539 57.143 0.00 0.00 32.18 3.71
677 755 1.757118 CTCGGATTTGCCTAGTCCTCA 59.243 52.381 0.00 0.00 0.00 3.86
690 768 4.522405 CCTAGTCCTCATGTAGATGGTCTG 59.478 50.000 0.00 0.00 0.00 3.51
699 777 7.309499 CCTCATGTAGATGGTCTGAGTTATACC 60.309 44.444 0.00 0.00 33.16 2.73
707 785 3.388024 GGTCTGAGTTATACCTGCATCCA 59.612 47.826 0.00 0.00 0.00 3.41
709 787 4.993584 GTCTGAGTTATACCTGCATCCATG 59.006 45.833 0.00 0.00 0.00 3.66
712 790 4.202357 TGAGTTATACCTGCATCCATGGTC 60.202 45.833 12.58 3.07 35.48 4.02
727 805 1.153349 GGTCCTTCCATCGCTGACC 60.153 63.158 0.00 0.00 38.78 4.02
733 812 2.094675 CTTCCATCGCTGACCCAATTT 58.905 47.619 0.00 0.00 0.00 1.82
741 820 2.664424 CGCTGACCCAATTTTACACACG 60.664 50.000 0.00 0.00 0.00 4.49
742 821 2.550606 GCTGACCCAATTTTACACACGA 59.449 45.455 0.00 0.00 0.00 4.35
749 828 3.372822 CCAATTTTACACACGACGCCTAT 59.627 43.478 0.00 0.00 0.00 2.57
804 883 4.033014 GCTCACAGTACTTTTCGGATAAGC 59.967 45.833 7.93 0.00 0.00 3.09
833 913 2.950309 AGTTATCGTACATCGCTGACCT 59.050 45.455 0.00 0.00 39.67 3.85
834 914 3.003482 AGTTATCGTACATCGCTGACCTC 59.997 47.826 0.00 0.00 39.67 3.85
836 916 0.678684 TCGTACATCGCTGACCTCCA 60.679 55.000 0.00 0.00 39.67 3.86
837 917 0.172578 CGTACATCGCTGACCTCCAA 59.827 55.000 0.00 0.00 0.00 3.53
838 918 1.403647 CGTACATCGCTGACCTCCAAA 60.404 52.381 0.00 0.00 0.00 3.28
839 919 2.695359 GTACATCGCTGACCTCCAAAA 58.305 47.619 0.00 0.00 0.00 2.44
840 920 1.813513 ACATCGCTGACCTCCAAAAG 58.186 50.000 0.00 0.00 0.00 2.27
841 921 1.072331 ACATCGCTGACCTCCAAAAGT 59.928 47.619 0.00 0.00 0.00 2.66
855 938 2.550208 CCAAAAGTCTGCCCGTACTCTT 60.550 50.000 0.00 0.00 0.00 2.85
879 965 1.026718 GCGCCATTAGTCTGCCAACT 61.027 55.000 0.00 0.00 0.00 3.16
954 1041 4.514585 AACCAGCAACACCGGCCA 62.515 61.111 0.00 0.00 0.00 5.36
966 1065 1.898574 CCGGCCAGCTGAGTTGTTT 60.899 57.895 17.39 0.00 0.00 2.83
978 1081 7.307694 CAGCTGAGTTGTTTAATTGATTAGCA 58.692 34.615 8.42 0.00 0.00 3.49
1083 1189 1.101635 TCTCAGTATCCGGGCAGTCG 61.102 60.000 0.00 0.00 0.00 4.18
1152 1264 1.881252 GTTCACGTGCACGGACACT 60.881 57.895 39.21 18.57 44.95 3.55
1252 3434 4.457433 CAGACATATTGCCGTATGTGTG 57.543 45.455 16.13 16.13 44.54 3.82
1307 3497 4.569943 TCATGAACTGCTAGTGTTTCTCC 58.430 43.478 0.00 0.00 0.00 3.71
1309 3499 2.626266 TGAACTGCTAGTGTTTCTCCGA 59.374 45.455 5.09 0.00 0.00 4.55
1314 3504 1.336887 GCTAGTGTTTCTCCGACTGCA 60.337 52.381 0.00 0.00 0.00 4.41
1315 3505 2.329379 CTAGTGTTTCTCCGACTGCAC 58.671 52.381 0.00 0.00 0.00 4.57
1319 3509 2.354821 GTGTTTCTCCGACTGCACTTTT 59.645 45.455 0.00 0.00 0.00 2.27
1324 3514 2.807967 TCTCCGACTGCACTTTTCATTG 59.192 45.455 0.00 0.00 0.00 2.82
1326 3516 2.548057 TCCGACTGCACTTTTCATTGTC 59.452 45.455 0.00 0.00 0.00 3.18
1327 3517 2.549754 CCGACTGCACTTTTCATTGTCT 59.450 45.455 0.00 0.00 0.00 3.41
1330 3520 4.496341 CGACTGCACTTTTCATTGTCTTGT 60.496 41.667 0.00 0.00 0.00 3.16
1332 3522 5.723295 ACTGCACTTTTCATTGTCTTGTTT 58.277 33.333 0.00 0.00 0.00 2.83
1335 3525 5.576384 TGCACTTTTCATTGTCTTGTTTCAC 59.424 36.000 0.00 0.00 0.00 3.18
1336 3526 5.576384 GCACTTTTCATTGTCTTGTTTCACA 59.424 36.000 0.00 0.00 0.00 3.58
1339 3529 9.299963 CACTTTTCATTGTCTTGTTTCACATAA 57.700 29.630 0.00 0.00 0.00 1.90
1340 3530 9.868277 ACTTTTCATTGTCTTGTTTCACATAAA 57.132 25.926 0.00 0.00 0.00 1.40
1345 3535 8.628280 TCATTGTCTTGTTTCACATAAATCACA 58.372 29.630 0.00 0.00 0.00 3.58
1346 3536 9.414295 CATTGTCTTGTTTCACATAAATCACAT 57.586 29.630 0.00 0.00 0.00 3.21
1347 3537 9.985730 ATTGTCTTGTTTCACATAAATCACATT 57.014 25.926 0.00 0.00 0.00 2.71
1348 3538 9.814899 TTGTCTTGTTTCACATAAATCACATTT 57.185 25.926 0.00 0.00 36.29 2.32
1353 3543 9.605275 TTGTTTCACATAAATCACATTTTTCCA 57.395 25.926 0.00 0.00 33.82 3.53
1354 3544 9.258826 TGTTTCACATAAATCACATTTTTCCAG 57.741 29.630 0.00 0.00 33.82 3.86
1355 3545 9.260002 GTTTCACATAAATCACATTTTTCCAGT 57.740 29.630 0.00 0.00 33.82 4.00
1357 3547 8.175925 TCACATAAATCACATTTTTCCAGTGA 57.824 30.769 0.00 0.00 45.26 3.41
1358 3548 8.637099 TCACATAAATCACATTTTTCCAGTGAA 58.363 29.630 0.00 0.00 44.47 3.18
1360 3550 8.641541 ACATAAATCACATTTTTCCAGTGAAGT 58.358 29.630 0.00 0.00 44.47 3.01
1363 3553 6.824305 ATCACATTTTTCCAGTGAAGTAGG 57.176 37.500 0.00 0.00 44.47 3.18
1364 3554 5.690865 TCACATTTTTCCAGTGAAGTAGGT 58.309 37.500 0.00 0.00 39.15 3.08
1365 3555 6.126409 TCACATTTTTCCAGTGAAGTAGGTT 58.874 36.000 0.00 0.00 39.15 3.50
1366 3556 6.605594 TCACATTTTTCCAGTGAAGTAGGTTT 59.394 34.615 0.00 0.00 39.15 3.27
1367 3557 6.697019 CACATTTTTCCAGTGAAGTAGGTTTG 59.303 38.462 0.00 0.00 35.33 2.93
1368 3558 6.379988 ACATTTTTCCAGTGAAGTAGGTTTGT 59.620 34.615 0.00 0.00 0.00 2.83
1370 3560 6.445357 TTTTCCAGTGAAGTAGGTTTGTTC 57.555 37.500 0.00 0.00 0.00 3.18
1371 3561 4.081322 TCCAGTGAAGTAGGTTTGTTCC 57.919 45.455 0.00 0.00 0.00 3.62
1372 3562 3.456644 TCCAGTGAAGTAGGTTTGTTCCA 59.543 43.478 0.00 0.00 0.00 3.53
1373 3563 3.564225 CCAGTGAAGTAGGTTTGTTCCAC 59.436 47.826 0.00 0.00 0.00 4.02
1374 3564 4.196193 CAGTGAAGTAGGTTTGTTCCACA 58.804 43.478 0.00 0.00 0.00 4.17
1375 3565 4.821805 CAGTGAAGTAGGTTTGTTCCACAT 59.178 41.667 0.00 0.00 0.00 3.21
1376 3566 5.995282 CAGTGAAGTAGGTTTGTTCCACATA 59.005 40.000 0.00 0.00 0.00 2.29
1378 3568 5.411669 GTGAAGTAGGTTTGTTCCACATAGG 59.588 44.000 0.00 0.00 39.47 2.57
1380 3570 5.578157 AGTAGGTTTGTTCCACATAGGTT 57.422 39.130 0.00 0.00 39.02 3.50
1381 3571 5.557866 AGTAGGTTTGTTCCACATAGGTTC 58.442 41.667 0.00 0.00 39.02 3.62
1382 3572 4.724279 AGGTTTGTTCCACATAGGTTCT 57.276 40.909 0.00 0.00 39.02 3.01
1384 3574 4.104102 AGGTTTGTTCCACATAGGTTCTGA 59.896 41.667 0.00 0.00 39.02 3.27
1386 3576 5.476945 GGTTTGTTCCACATAGGTTCTGAAT 59.523 40.000 0.00 0.00 39.02 2.57
1388 3578 5.241403 TGTTCCACATAGGTTCTGAATGT 57.759 39.130 0.00 0.00 39.02 2.71
1394 3584 6.573664 CACATAGGTTCTGAATGTGGAAAA 57.426 37.500 12.00 0.00 44.28 2.29
1395 3585 6.980593 CACATAGGTTCTGAATGTGGAAAAA 58.019 36.000 12.00 0.00 44.28 1.94
1425 3615 8.621532 ATGAAGCTAAAATGTCTACTTGTGAA 57.378 30.769 0.00 0.00 0.00 3.18
1427 3617 8.342634 TGAAGCTAAAATGTCTACTTGTGAAAC 58.657 33.333 0.00 0.00 37.35 2.78
1428 3618 8.451908 AAGCTAAAATGTCTACTTGTGAAACT 57.548 30.769 0.00 0.00 38.04 2.66
1429 3619 9.555727 AAGCTAAAATGTCTACTTGTGAAACTA 57.444 29.630 0.00 0.00 38.04 2.24
1516 3827 6.922957 TGAAATAGTGATTTTTGTGACAAGCC 59.077 34.615 0.00 0.00 35.33 4.35
1518 3829 4.311816 AGTGATTTTTGTGACAAGCCAG 57.688 40.909 0.00 0.00 0.00 4.85
1521 3832 2.957491 TTTTTGTGACAAGCCAGTGG 57.043 45.000 4.20 4.20 0.00 4.00
1522 3833 2.136298 TTTTGTGACAAGCCAGTGGA 57.864 45.000 15.20 0.00 0.00 4.02
1523 3834 2.136298 TTTGTGACAAGCCAGTGGAA 57.864 45.000 15.20 0.00 0.00 3.53
1525 3836 1.679139 TGTGACAAGCCAGTGGAAAG 58.321 50.000 15.20 3.28 0.00 2.62
1527 3838 1.334869 GTGACAAGCCAGTGGAAAGTG 59.665 52.381 15.20 6.81 0.00 3.16
1528 3839 1.211703 TGACAAGCCAGTGGAAAGTGA 59.788 47.619 15.20 0.00 0.00 3.41
1529 3840 2.297701 GACAAGCCAGTGGAAAGTGAA 58.702 47.619 15.20 0.00 0.00 3.18
1530 3841 2.687935 GACAAGCCAGTGGAAAGTGAAA 59.312 45.455 15.20 0.00 0.00 2.69
1531 3842 3.299503 ACAAGCCAGTGGAAAGTGAAAT 58.700 40.909 15.20 0.00 0.00 2.17
1532 3843 4.469657 ACAAGCCAGTGGAAAGTGAAATA 58.530 39.130 15.20 0.00 0.00 1.40
1533 3844 5.079643 ACAAGCCAGTGGAAAGTGAAATAT 58.920 37.500 15.20 0.00 0.00 1.28
1534 3845 6.245408 ACAAGCCAGTGGAAAGTGAAATATA 58.755 36.000 15.20 0.00 0.00 0.86
1535 3846 6.891908 ACAAGCCAGTGGAAAGTGAAATATAT 59.108 34.615 15.20 0.00 0.00 0.86
1536 3847 7.067494 ACAAGCCAGTGGAAAGTGAAATATATC 59.933 37.037 15.20 0.00 0.00 1.63
1537 3848 6.904626 AGCCAGTGGAAAGTGAAATATATCT 58.095 36.000 15.20 0.00 0.00 1.98
1538 3849 7.349598 AGCCAGTGGAAAGTGAAATATATCTT 58.650 34.615 15.20 0.00 0.00 2.40
1539 3850 7.500559 AGCCAGTGGAAAGTGAAATATATCTTC 59.499 37.037 15.20 0.00 0.00 2.87
1540 3851 7.500559 GCCAGTGGAAAGTGAAATATATCTTCT 59.499 37.037 15.20 0.00 0.00 2.85
1541 3852 8.834465 CCAGTGGAAAGTGAAATATATCTTCTG 58.166 37.037 1.68 0.00 0.00 3.02
1542 3853 9.605275 CAGTGGAAAGTGAAATATATCTTCTGA 57.395 33.333 8.26 0.00 0.00 3.27
1634 4139 6.040842 ACAAGCCAGTGAAAAGTGAAATGTAT 59.959 34.615 0.00 0.00 0.00 2.29
1703 4212 3.859411 TTGTGAAACCGATTATTGGGC 57.141 42.857 3.22 0.00 34.36 5.36
1859 4581 9.965902 ACCAGAGAAAGTGAAATTGTAATCTAT 57.034 29.630 0.00 0.00 0.00 1.98
1985 4712 3.221964 AGCGAGTGGAAAATGAAATGC 57.778 42.857 0.00 0.00 0.00 3.56
1996 4723 5.990996 GGAAAATGAAATGCAGGTTCAGAAA 59.009 36.000 17.65 0.00 38.34 2.52
2003 4730 4.778534 ATGCAGGTTCAGAAATGTGAAG 57.221 40.909 0.00 0.00 37.12 3.02
2006 4733 5.129634 TGCAGGTTCAGAAATGTGAAGTAA 58.870 37.500 0.00 0.00 37.12 2.24
2015 4742 8.902540 TCAGAAATGTGAAGTAACAACTACAT 57.097 30.769 0.00 0.00 32.81 2.29
2078 5004 5.444983 TCAAAATGTGAAATGTACGTTCGG 58.555 37.500 0.00 0.00 31.51 4.30
2086 5012 7.292292 TGTGAAATGTACGTTCGGATTTAAAG 58.708 34.615 0.00 0.00 0.00 1.85
2091 5017 1.808343 ACGTTCGGATTTAAAGGTGGC 59.192 47.619 0.00 0.00 0.00 5.01
2092 5018 1.807742 CGTTCGGATTTAAAGGTGGCA 59.192 47.619 0.00 0.00 0.00 4.92
2101 5027 7.039644 TCGGATTTAAAGGTGGCAGAAAAATAA 60.040 33.333 0.00 0.00 0.00 1.40
2103 5034 7.875554 GGATTTAAAGGTGGCAGAAAAATAACA 59.124 33.333 0.00 0.00 0.00 2.41
2105 5036 8.655651 TTTAAAGGTGGCAGAAAAATAACAAG 57.344 30.769 0.00 0.00 0.00 3.16
2225 5237 9.670719 CAAATTAGTCAAGAGGAAAGAAAAGTC 57.329 33.333 0.00 0.00 0.00 3.01
2232 5244 7.172703 GTCAAGAGGAAAGAAAAGTCGGATTTA 59.827 37.037 0.00 0.00 0.00 1.40
2233 5245 7.387948 TCAAGAGGAAAGAAAAGTCGGATTTAG 59.612 37.037 0.00 0.00 0.00 1.85
2235 5247 6.651225 AGAGGAAAGAAAAGTCGGATTTAGTG 59.349 38.462 0.00 0.00 0.00 2.74
2236 5248 6.296803 AGGAAAGAAAAGTCGGATTTAGTGT 58.703 36.000 0.00 0.00 0.00 3.55
2237 5249 6.204882 AGGAAAGAAAAGTCGGATTTAGTGTG 59.795 38.462 0.00 0.00 0.00 3.82
2239 5251 5.924475 AGAAAAGTCGGATTTAGTGTGTG 57.076 39.130 0.00 0.00 0.00 3.82
2255 5273 4.162320 AGTGTGTGAAAAAGAGAGAGTGGA 59.838 41.667 0.00 0.00 0.00 4.02
2276 5295 4.142381 GGATCTGCCACATTACTTTTGTCC 60.142 45.833 0.00 0.00 36.34 4.02
2284 5303 5.182950 CCACATTACTTTTGTCCTGCATGTA 59.817 40.000 0.00 0.00 0.00 2.29
2304 5323 6.040211 TGTAAAGTACAATGGTGGGCCAGA 62.040 45.833 6.40 0.00 40.12 3.86
2353 5377 8.834749 AGAGAAAACTTCCTTATAGAACACAC 57.165 34.615 0.00 0.00 0.00 3.82
2354 5378 7.599245 AGAGAAAACTTCCTTATAGAACACACG 59.401 37.037 0.00 0.00 0.00 4.49
2356 5380 7.599245 AGAAAACTTCCTTATAGAACACACGAG 59.401 37.037 0.00 0.00 0.00 4.18
2360 5384 7.536855 ACTTCCTTATAGAACACACGAGTAAG 58.463 38.462 0.00 0.00 0.00 2.34
2365 5389 9.875675 CCTTATAGAACACACGAGTAAGTATAC 57.124 37.037 0.00 0.00 0.00 1.47
2373 5397 4.212847 ACACGAGTAAGTATACGATGCGAT 59.787 41.667 12.59 1.83 37.11 4.58
2378 5402 5.450171 AGTAAGTATACGATGCGATGTGTC 58.550 41.667 0.00 0.00 37.11 3.67
2380 5404 3.890128 AGTATACGATGCGATGTGTCAG 58.110 45.455 0.00 0.00 0.00 3.51
2382 5406 2.647529 TACGATGCGATGTGTCAGTT 57.352 45.000 0.00 0.00 0.00 3.16
2393 5417 2.862541 TGTGTCAGTTGCTTATTGGCT 58.137 42.857 0.00 0.00 0.00 4.75
2394 5418 4.014569 TGTGTCAGTTGCTTATTGGCTA 57.985 40.909 0.00 0.00 0.00 3.93
2395 5419 4.002982 TGTGTCAGTTGCTTATTGGCTAG 58.997 43.478 0.00 0.00 0.00 3.42
2396 5420 3.375299 GTGTCAGTTGCTTATTGGCTAGG 59.625 47.826 0.00 0.00 0.00 3.02
2397 5421 2.356069 GTCAGTTGCTTATTGGCTAGGC 59.644 50.000 9.85 9.85 33.20 3.93
2398 5422 2.026356 TCAGTTGCTTATTGGCTAGGCA 60.026 45.455 16.16 16.16 40.35 4.75
2399 5423 2.357009 CAGTTGCTTATTGGCTAGGCAG 59.643 50.000 19.32 8.93 42.63 4.85
2401 5425 0.918983 TGCTTATTGGCTAGGCAGGT 59.081 50.000 19.32 14.25 37.50 4.00
2402 5426 1.312815 GCTTATTGGCTAGGCAGGTG 58.687 55.000 19.32 11.72 32.84 4.00
2403 5427 1.312815 CTTATTGGCTAGGCAGGTGC 58.687 55.000 19.32 0.00 41.14 5.01
2417 5441 4.934989 GTGCCAGTAGGTACCAGC 57.065 61.111 15.94 9.14 43.92 4.85
2418 5442 1.980052 GTGCCAGTAGGTACCAGCA 59.020 57.895 15.94 11.68 43.92 4.41
2422 5446 0.824759 CCAGTAGGTACCAGCACCTC 59.175 60.000 15.94 0.00 46.34 3.85
2423 5447 1.619977 CCAGTAGGTACCAGCACCTCT 60.620 57.143 15.94 0.00 46.34 3.69
2427 5451 1.270907 AGGTACCAGCACCTCTCAAG 58.729 55.000 15.94 0.00 46.34 3.02
2428 5452 0.977395 GGTACCAGCACCTCTCAAGT 59.023 55.000 7.15 0.00 35.55 3.16
2429 5453 1.348036 GGTACCAGCACCTCTCAAGTT 59.652 52.381 7.15 0.00 35.55 2.66
2430 5454 2.224548 GGTACCAGCACCTCTCAAGTTT 60.225 50.000 7.15 0.00 35.55 2.66
2432 5456 1.202818 ACCAGCACCTCTCAAGTTTCC 60.203 52.381 0.00 0.00 0.00 3.13
2433 5457 1.151668 CAGCACCTCTCAAGTTTCCG 58.848 55.000 0.00 0.00 0.00 4.30
2434 5458 0.603975 AGCACCTCTCAAGTTTCCGC 60.604 55.000 0.00 0.00 0.00 5.54
2435 5459 0.603975 GCACCTCTCAAGTTTCCGCT 60.604 55.000 0.00 0.00 0.00 5.52
2436 5460 1.884235 CACCTCTCAAGTTTCCGCTT 58.116 50.000 0.00 0.00 0.00 4.68
2437 5461 2.222027 CACCTCTCAAGTTTCCGCTTT 58.778 47.619 0.00 0.00 0.00 3.51
2438 5462 3.399330 CACCTCTCAAGTTTCCGCTTTA 58.601 45.455 0.00 0.00 0.00 1.85
2439 5463 3.433615 CACCTCTCAAGTTTCCGCTTTAG 59.566 47.826 0.00 0.00 0.00 1.85
2440 5464 3.003480 CCTCTCAAGTTTCCGCTTTAGG 58.997 50.000 0.00 0.00 0.00 2.69
2441 5465 3.003480 CTCTCAAGTTTCCGCTTTAGGG 58.997 50.000 0.00 0.00 0.00 3.53
2442 5466 2.370849 TCTCAAGTTTCCGCTTTAGGGT 59.629 45.455 0.00 0.00 0.00 4.34
2443 5467 2.742589 CTCAAGTTTCCGCTTTAGGGTC 59.257 50.000 0.00 0.00 0.00 4.46
2445 5469 3.579586 TCAAGTTTCCGCTTTAGGGTCTA 59.420 43.478 0.00 0.00 0.00 2.59
2459 5586 7.095313 GCTTTAGGGTCTACTTGTTCTAAACAC 60.095 40.741 0.00 0.00 41.97 3.32
2461 5588 5.855045 AGGGTCTACTTGTTCTAAACACTG 58.145 41.667 0.00 0.00 41.97 3.66
2476 5603 9.719355 TTCTAAACACTGCTACTTGATATGAAA 57.281 29.630 0.00 0.00 0.00 2.69
2502 5771 8.882736 ACTTTTCTCAACAATTTTTCATCAACC 58.117 29.630 0.00 0.00 0.00 3.77
2508 5777 6.475076 TCAACAATTTTTCATCAACCGTCTTG 59.525 34.615 0.00 0.00 0.00 3.02
2572 5936 6.728200 TGTGAAAAGCAACACTGAAAGATAG 58.272 36.000 0.00 0.00 37.43 2.08
2583 6151 8.715998 CAACACTGAAAGATAGCACCATATATC 58.284 37.037 0.00 0.00 37.43 1.63
2600 6168 7.147585 ACCATATATCCTATTAGCTGCCAAGAG 60.148 40.741 0.00 0.00 0.00 2.85
2662 6235 6.127591 TGGGATAAAAATACCATGGTTTGACG 60.128 38.462 25.38 0.00 27.08 4.35
2663 6236 6.270064 GGATAAAAATACCATGGTTTGACGG 58.730 40.000 25.38 0.00 0.00 4.79
2675 6248 2.097825 GTTTGACGGCTACTCCCTCTA 58.902 52.381 0.00 0.00 0.00 2.43
2677 6250 1.982660 TGACGGCTACTCCCTCTATG 58.017 55.000 0.00 0.00 0.00 2.23
2679 6252 1.881324 GACGGCTACTCCCTCTATGTC 59.119 57.143 0.00 0.00 0.00 3.06
2680 6253 0.875728 CGGCTACTCCCTCTATGTCG 59.124 60.000 0.00 0.00 0.00 4.35
2681 6254 1.542767 CGGCTACTCCCTCTATGTCGA 60.543 57.143 0.00 0.00 0.00 4.20
2689 6266 5.202004 ACTCCCTCTATGTCGAAATAGTGT 58.798 41.667 19.82 10.66 32.82 3.55
2717 6294 5.996669 AGTTTTGTCCGAAATCTAACGTT 57.003 34.783 5.88 5.88 0.00 3.99
2723 6300 7.424227 TTGTCCGAAATCTAACGTTGTAAAT 57.576 32.000 11.99 0.00 0.00 1.40
2724 6301 8.531622 TTGTCCGAAATCTAACGTTGTAAATA 57.468 30.769 11.99 0.00 0.00 1.40
2909 6511 5.567138 ATGCACTACATTTTAGCAAGGAC 57.433 39.130 0.00 0.00 38.85 3.85
2913 6515 5.181245 GCACTACATTTTAGCAAGGACTGAA 59.819 40.000 0.00 0.00 0.00 3.02
2935 6537 7.629157 TGAACACTGAATACCATCTCCATTTA 58.371 34.615 0.00 0.00 0.00 1.40
2936 6538 7.552687 TGAACACTGAATACCATCTCCATTTAC 59.447 37.037 0.00 0.00 0.00 2.01
3012 6616 6.677781 TGTGAATTTATCGATGTTTCTCCC 57.322 37.500 8.54 2.61 0.00 4.30
3014 6618 7.561251 TGTGAATTTATCGATGTTTCTCCCTA 58.439 34.615 8.54 0.00 0.00 3.53
3080 6695 3.687212 GCCTGGCTACTTTCTCTTTTCTC 59.313 47.826 12.43 0.00 0.00 2.87
3082 6697 5.337652 GCCTGGCTACTTTCTCTTTTCTCTA 60.338 44.000 12.43 0.00 0.00 2.43
3102 6717 8.359875 TCTCTATTTTGGTTTCATTGGCATTA 57.640 30.769 0.00 0.00 0.00 1.90
3109 6724 9.814899 TTTTGGTTTCATTGGCATTATAGTATG 57.185 29.630 0.00 0.00 0.00 2.39
3203 6883 7.116736 AGAACTTTGGTAAATCGATGGGTATT 58.883 34.615 0.00 0.00 0.00 1.89
3205 6885 7.712204 ACTTTGGTAAATCGATGGGTATTTT 57.288 32.000 0.00 0.00 0.00 1.82
3261 6941 3.580458 GAGATGAGCCCTCCTGCTTATAA 59.420 47.826 0.00 0.00 42.95 0.98
3273 6953 8.871125 CCCTCCTGCTTATAAGTCTCTTAATAA 58.129 37.037 13.91 0.00 0.00 1.40
3290 6970 8.062065 TCTTAATAATCCCGCAAAAATTGAGT 57.938 30.769 0.00 0.00 0.00 3.41
3299 6979 3.550030 CGCAAAAATTGAGTCCGGTTTCT 60.550 43.478 0.00 0.00 0.00 2.52
3339 7019 1.153168 CGACCGCTGGGATTTGGAT 60.153 57.895 0.00 0.00 36.97 3.41
3340 7020 0.748005 CGACCGCTGGGATTTGGATT 60.748 55.000 0.00 0.00 36.97 3.01
3341 7021 1.025041 GACCGCTGGGATTTGGATTC 58.975 55.000 0.00 0.00 36.97 2.52
3343 7023 1.063717 ACCGCTGGGATTTGGATTCAT 60.064 47.619 0.00 0.00 36.97 2.57
3344 7024 1.610522 CCGCTGGGATTTGGATTCATC 59.389 52.381 0.00 0.00 34.06 2.92
3346 7026 2.301346 GCTGGGATTTGGATTCATCGT 58.699 47.619 0.00 0.00 0.00 3.73
3372 7056 3.054139 AGTGGACACCTTCATATGCATGT 60.054 43.478 10.16 0.00 33.57 3.21
3423 7111 5.001237 TCAGGAATGCATGTGCTTTTATG 57.999 39.130 0.00 8.89 42.66 1.90
3429 7117 6.239120 GGAATGCATGTGCTTTTATGGTCTAT 60.239 38.462 0.00 0.00 42.66 1.98
3463 7151 9.494271 CGGCTATTATATGCCTTACAATGATAT 57.506 33.333 0.00 0.00 46.42 1.63
3475 7187 7.117523 GCCTTACAATGATATGTTGCACAAAAA 59.882 33.333 0.00 0.00 34.75 1.94
3504 7217 9.594478 TTTATATGCATACATTAGGTCGTATGG 57.406 33.333 8.99 0.00 43.35 2.74
3509 7222 5.872617 GCATACATTAGGTCGTATGGCATAA 59.127 40.000 9.14 0.00 43.35 1.90
3515 7228 4.073293 AGGTCGTATGGCATAAAAGGAG 57.927 45.455 9.14 0.00 0.00 3.69
3519 7232 4.994852 GTCGTATGGCATAAAAGGAGCATA 59.005 41.667 9.14 0.00 0.00 3.14
3520 7233 4.994852 TCGTATGGCATAAAAGGAGCATAC 59.005 41.667 9.14 0.00 0.00 2.39
3543 7256 3.989167 TGCAACAACATCATAAGCTTTGC 59.011 39.130 3.20 4.77 38.83 3.68
3544 7257 3.059834 GCAACAACATCATAAGCTTTGCG 59.940 43.478 3.20 0.00 0.00 4.85
3550 7263 3.119388 ACATCATAAGCTTTGCGCACATT 60.119 39.130 11.12 5.11 42.61 2.71
3555 7268 6.790282 TCATAAGCTTTGCGCACATTAATTA 58.210 32.000 11.12 5.50 42.61 1.40
3557 7270 5.954434 AAGCTTTGCGCACATTAATTATG 57.046 34.783 11.12 0.00 42.61 1.90
3575 7288 1.619654 TGGCAATCCAGAGTGTTTGG 58.380 50.000 0.00 0.00 37.47 3.28
3577 7290 1.270550 GGCAATCCAGAGTGTTTGGTG 59.729 52.381 0.00 0.00 37.02 4.17
3583 7296 4.015872 TCCAGAGTGTTTGGTGGATTAC 57.984 45.455 0.00 0.00 34.03 1.89
3590 7303 4.505039 AGTGTTTGGTGGATTACACTCCTC 60.505 45.833 0.00 0.00 45.89 3.71
3602 7315 6.369065 GGATTACACTCCTCGCTTATTATTGG 59.631 42.308 0.00 0.00 32.18 3.16
3603 7316 4.755266 ACACTCCTCGCTTATTATTGGT 57.245 40.909 0.00 0.00 0.00 3.67
3604 7317 5.099042 ACACTCCTCGCTTATTATTGGTT 57.901 39.130 0.00 0.00 0.00 3.67
3605 7318 6.229936 ACACTCCTCGCTTATTATTGGTTA 57.770 37.500 0.00 0.00 0.00 2.85
3606 7319 6.646267 ACACTCCTCGCTTATTATTGGTTAA 58.354 36.000 0.00 0.00 0.00 2.01
3607 7320 6.537660 ACACTCCTCGCTTATTATTGGTTAAC 59.462 38.462 0.00 0.00 0.00 2.01
3630 7367 8.853077 AACCAAACAAGTTAGGTATAAGGTAC 57.147 34.615 0.00 0.00 33.15 3.34
3676 7421 3.992643 TCACAAAATGATGTTTGCAGGG 58.007 40.909 0.00 0.00 41.33 4.45
3686 7431 2.575893 TTTGCAGGGCGACGGACTA 61.576 57.895 0.00 0.00 0.00 2.59
3690 7435 1.590147 CAGGGCGACGGACTAAACT 59.410 57.895 0.00 0.00 0.00 2.66
3702 7447 3.671716 GGACTAAACTTCCCATTGACGT 58.328 45.455 0.00 0.00 0.00 4.34
3725 7470 2.410730 CCAAGTAAAGTACTTCACGGCG 59.589 50.000 8.95 4.80 45.38 6.46
3751 7496 0.620556 GAGAAGATGGAGGCCAACCA 59.379 55.000 21.00 21.00 36.95 3.67
3762 7507 3.063743 GCCAACCATAGCCGGCAAC 62.064 63.158 31.54 0.00 44.25 4.17
3770 7515 0.392998 ATAGCCGGCAACAGTTGAGG 60.393 55.000 31.54 18.44 34.48 3.86
3791 7536 4.540099 AGGAAGATGTTGTCCAATTCCCTA 59.460 41.667 6.54 0.00 40.99 3.53
3797 7542 6.389869 AGATGTTGTCCAATTCCCTATTCCTA 59.610 38.462 0.00 0.00 0.00 2.94
3831 7576 1.067212 CCAGCGACCTGTACTACATCC 59.933 57.143 0.00 0.00 37.38 3.51
3846 7591 2.726821 ACATCCACAACATCATGACCC 58.273 47.619 0.00 0.00 0.00 4.46
3904 7649 0.861155 ATCTCCTCCTACGGGGACAT 59.139 55.000 0.00 0.00 36.09 3.06
3971 7716 2.005606 ATGTCCCCACCTTGTGCACA 62.006 55.000 17.42 17.42 31.34 4.57
4070 7818 2.182030 CTCGCCTCCAACCTCGAC 59.818 66.667 0.00 0.00 0.00 4.20
4073 7821 4.452733 GCCTCCAACCTCGACGGG 62.453 72.222 0.00 0.00 36.97 5.28
4106 7854 0.901827 TCGCTGACTTCCATGCCTTA 59.098 50.000 0.00 0.00 0.00 2.69
4118 7866 3.117776 TCCATGCCTTATCAGATGCAGTT 60.118 43.478 0.00 0.00 37.12 3.16
4194 7943 3.244976 CAAAGTCATGAATTCGGCAACC 58.755 45.455 9.12 0.00 0.00 3.77
4260 8022 2.937689 ACCTGGGCCTCATGCTGT 60.938 61.111 4.53 0.00 40.92 4.40
4298 8060 5.215252 CCTAACTATAGGTCACCATGTGG 57.785 47.826 4.43 0.00 43.32 4.17
4299 8061 4.040461 CCTAACTATAGGTCACCATGTGGG 59.960 50.000 4.43 0.00 43.32 4.61
4328 8096 3.022406 GAGAGTATTGGTACTGGGACGT 58.978 50.000 0.00 0.00 41.19 4.34
4338 8106 2.203523 TGGGACGTCGAGAACCCA 60.204 61.111 16.31 16.31 43.25 4.51
4386 8154 4.082571 GCAACTACATTTCTCAATGGCACT 60.083 41.667 0.00 0.00 43.82 4.40
4387 8155 5.396484 CAACTACATTTCTCAATGGCACTG 58.604 41.667 0.00 0.00 43.82 3.66
4388 8156 4.655963 ACTACATTTCTCAATGGCACTGT 58.344 39.130 0.00 0.00 43.82 3.55
4431 8199 2.084610 TCAAGACGCTGATCAACCAG 57.915 50.000 0.00 0.00 37.23 4.00
4482 8251 7.277098 GCTTGTAGTATCCACAATAAAACGAGA 59.723 37.037 0.00 0.00 35.46 4.04
4498 8267 7.504924 AAAACGAGATGATCAACCAAAAGTA 57.495 32.000 0.00 0.00 0.00 2.24
4552 8321 9.921637 TTTTTGGCTTTAAGTATCCACAATAAG 57.078 29.630 0.00 0.00 0.00 1.73
4558 8327 7.171678 GCTTTAAGTATCCACAATAAGAGCGAT 59.828 37.037 0.00 0.00 0.00 4.58
4578 8347 5.559608 GCGATTCATCTGTGTGAACCATATG 60.560 44.000 0.00 0.00 40.60 1.78
4611 8383 5.981088 TTGCCATGAATTCTAATGTGTGT 57.019 34.783 7.05 0.00 0.00 3.72
4628 8400 6.874288 TGTGTGTCATTGTGTTGATCATAA 57.126 33.333 0.00 0.00 0.00 1.90
4681 8453 1.337541 GGTTGAGTCCTGAACGGTACC 60.338 57.143 0.16 0.16 0.00 3.34
4684 8456 0.169894 GAGTCCTGAACGGTACCGAC 59.830 60.000 39.52 29.30 42.83 4.79
4691 8463 1.287041 GAACGGTACCGACAGTTGGC 61.287 60.000 39.52 14.85 42.99 4.52
4720 8492 5.708230 TGCAATAACCGGTTTTAGAGTTGAT 59.292 36.000 27.64 6.37 0.00 2.57
4726 8498 4.069304 CCGGTTTTAGAGTTGATGGTTCA 58.931 43.478 0.00 0.00 0.00 3.18
4756 8545 8.925161 TTAGTGTTGAAAAATGGACTTCTTTG 57.075 30.769 0.00 0.00 0.00 2.77
4783 8572 5.220854 CCTTGGATCATTACAATCGTGGTTC 60.221 44.000 0.00 0.00 0.00 3.62
4792 8581 6.627395 TTACAATCGTGGTTCACAAGAAAT 57.373 33.333 0.00 0.00 40.90 2.17
4801 8590 6.750039 CGTGGTTCACAAGAAATAAACAAAGT 59.250 34.615 0.00 0.00 35.08 2.66
4804 8593 7.757624 TGGTTCACAAGAAATAAACAAAGTGAC 59.242 33.333 0.00 0.00 34.84 3.67
4805 8594 7.973944 GGTTCACAAGAAATAAACAAAGTGACT 59.026 33.333 0.00 0.00 34.84 3.41
4813 8602 1.594331 AACAAAGTGACTTCTCCGGC 58.406 50.000 0.00 0.00 0.00 6.13
4819 8608 4.657436 AAGTGACTTCTCCGGCTTATAG 57.343 45.455 0.00 0.00 0.00 1.31
4826 8615 5.198965 ACTTCTCCGGCTTATAGTCTTACA 58.801 41.667 0.00 0.00 0.00 2.41
4828 8617 4.142790 TCTCCGGCTTATAGTCTTACAGG 58.857 47.826 0.00 0.00 0.00 4.00
4829 8618 3.228453 TCCGGCTTATAGTCTTACAGGG 58.772 50.000 0.00 0.00 0.00 4.45
4830 8619 2.299297 CCGGCTTATAGTCTTACAGGGG 59.701 54.545 0.00 0.00 0.00 4.79
4833 8622 3.007074 GGCTTATAGTCTTACAGGGGCTC 59.993 52.174 0.00 0.00 0.00 4.70
4855 8644 7.069331 GGCTCACAACATATATCTAGGAGCTAT 59.931 40.741 16.29 0.00 43.42 2.97
4857 8646 8.298729 TCACAACATATATCTAGGAGCTATGG 57.701 38.462 0.00 0.00 0.00 2.74
4878 8667 9.308318 CTATGGCTAAAGAAACTCTAAACTCTC 57.692 37.037 0.00 0.00 0.00 3.20
4880 8669 7.680730 TGGCTAAAGAAACTCTAAACTCTCAT 58.319 34.615 0.00 0.00 0.00 2.90
5188 8998 2.616960 GACTGCGTGGTGACAATGATA 58.383 47.619 0.00 0.00 46.06 2.15
5250 9060 4.157840 CGATATGACCGAGGTGGAATATGA 59.842 45.833 0.00 0.00 42.00 2.15
5337 10029 1.982958 CCTGCCCCCGTATATAAAGGT 59.017 52.381 5.18 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 2.347490 GCTCCGGCAAGTCCAGAA 59.653 61.111 0.00 0.00 38.54 3.02
108 114 3.080121 CTCCGCCTGCTCCTCCTT 61.080 66.667 0.00 0.00 0.00 3.36
133 154 2.267324 GCCACTGCTCCTGTCTCC 59.733 66.667 0.00 0.00 33.53 3.71
148 169 3.866582 CCTCCATCGGGGTCAGCC 61.867 72.222 0.00 0.00 38.11 4.85
151 172 2.687200 CCACCTCCATCGGGGTCA 60.687 66.667 0.00 0.00 38.11 4.02
155 176 2.044806 GATCCACCACCTCCATCGGG 62.045 65.000 0.00 0.00 0.00 5.14
220 258 1.272092 CCTCCATGTTGAAGCCCTCAA 60.272 52.381 0.00 0.00 41.93 3.02
222 260 0.620556 TCCTCCATGTTGAAGCCCTC 59.379 55.000 0.00 0.00 0.00 4.30
223 261 1.064166 CATCCTCCATGTTGAAGCCCT 60.064 52.381 0.00 0.00 0.00 5.19
267 305 2.509336 CGCCATCTCGACCGCTTT 60.509 61.111 0.00 0.00 0.00 3.51
315 353 2.212327 CCTCCACATAGGCCTCGTT 58.788 57.895 9.68 0.00 37.29 3.85
583 659 5.474876 CCAGTCCTTAAATTTGCTCTTCTGT 59.525 40.000 0.00 0.00 0.00 3.41
588 664 3.092301 GCCCAGTCCTTAAATTTGCTCT 58.908 45.455 0.00 0.00 0.00 4.09
636 713 0.531090 CTCAAACACCCACGGACGAA 60.531 55.000 0.00 0.00 0.00 3.85
637 714 1.068417 CTCAAACACCCACGGACGA 59.932 57.895 0.00 0.00 0.00 4.20
648 725 0.881118 GCAAATCCGAGCCTCAAACA 59.119 50.000 0.00 0.00 0.00 2.83
658 736 1.860641 TGAGGACTAGGCAAATCCGA 58.139 50.000 0.00 0.00 40.77 4.55
676 754 7.374272 CAGGTATAACTCAGACCATCTACATG 58.626 42.308 0.00 0.00 41.33 3.21
677 755 6.015010 GCAGGTATAACTCAGACCATCTACAT 60.015 42.308 0.00 0.00 41.33 2.29
690 768 4.319177 GACCATGGATGCAGGTATAACTC 58.681 47.826 21.47 0.00 35.36 3.01
699 777 0.256752 TGGAAGGACCATGGATGCAG 59.743 55.000 21.47 0.00 44.64 4.41
709 787 1.153349 GGTCAGCGATGGAAGGACC 60.153 63.158 0.00 0.00 41.00 4.46
712 790 0.107017 ATTGGGTCAGCGATGGAAGG 60.107 55.000 0.00 0.00 0.00 3.46
727 805 1.533731 AGGCGTCGTGTGTAAAATTGG 59.466 47.619 0.00 0.00 0.00 3.16
733 812 0.173935 CCCATAGGCGTCGTGTGTAA 59.826 55.000 0.00 0.00 0.00 2.41
749 828 0.961019 CAGCTTGCAAACTTAGCCCA 59.039 50.000 0.00 0.00 35.53 5.36
759 838 4.619973 CATCAAGTTAAACCAGCTTGCAA 58.380 39.130 0.00 0.00 43.21 4.08
804 883 4.042398 CGATGTACGATAACTGGGTCTTG 58.958 47.826 0.00 0.00 45.77 3.02
833 913 1.001633 GAGTACGGGCAGACTTTTGGA 59.998 52.381 0.00 0.00 0.00 3.53
834 914 1.002087 AGAGTACGGGCAGACTTTTGG 59.998 52.381 0.00 0.00 0.00 3.28
836 916 2.609737 CGAAGAGTACGGGCAGACTTTT 60.610 50.000 0.00 0.00 0.00 2.27
837 917 1.067776 CGAAGAGTACGGGCAGACTTT 60.068 52.381 0.00 0.00 0.00 2.66
838 918 0.526662 CGAAGAGTACGGGCAGACTT 59.473 55.000 0.00 0.00 0.00 3.01
839 919 0.322277 TCGAAGAGTACGGGCAGACT 60.322 55.000 0.00 0.00 0.00 3.24
840 920 0.179169 GTCGAAGAGTACGGGCAGAC 60.179 60.000 0.00 0.00 36.95 3.51
841 921 1.642037 CGTCGAAGAGTACGGGCAGA 61.642 60.000 0.00 0.00 36.95 4.26
855 938 1.226575 CAGACTAATGGCGCGTCGA 60.227 57.895 6.09 0.00 33.10 4.20
888 974 4.385310 GGTGGTCTTCATTTATAGGCTGGT 60.385 45.833 0.00 0.00 0.00 4.00
954 1041 7.452880 TGCTAATCAATTAAACAACTCAGCT 57.547 32.000 0.00 0.00 0.00 4.24
958 1057 9.508567 GAAGGATGCTAATCAATTAAACAACTC 57.491 33.333 0.00 0.00 34.17 3.01
966 1065 6.017934 GCTTGTCGAAGGATGCTAATCAATTA 60.018 38.462 0.00 0.00 34.17 1.40
1054 1160 0.249238 GATACTGAGACCGCCAGCAG 60.249 60.000 0.00 0.00 35.14 4.24
1152 1264 4.082523 CCGGGCCGCTTCTTCTCA 62.083 66.667 23.20 0.00 0.00 3.27
1194 3376 3.426836 ATGCAGCTCTGGGGGCAT 61.427 61.111 1.34 1.34 41.81 4.40
1252 3434 5.004345 CGATAAAATTTGACCAAACGGATGC 59.996 40.000 0.00 0.00 32.51 3.91
1307 3497 3.885484 AGACAATGAAAAGTGCAGTCG 57.115 42.857 0.00 0.00 0.00 4.18
1309 3499 4.989279 ACAAGACAATGAAAAGTGCAGT 57.011 36.364 0.00 0.00 0.00 4.40
1330 3520 9.258826 CACTGGAAAAATGTGATTTATGTGAAA 57.741 29.630 0.00 0.00 33.95 2.69
1332 3522 8.175925 TCACTGGAAAAATGTGATTTATGTGA 57.824 30.769 0.00 0.00 36.03 3.58
1339 3529 6.777580 ACCTACTTCACTGGAAAAATGTGATT 59.222 34.615 0.00 0.00 39.92 2.57
1340 3530 6.306987 ACCTACTTCACTGGAAAAATGTGAT 58.693 36.000 0.00 0.00 39.92 3.06
1342 3532 6.391227 AACCTACTTCACTGGAAAAATGTG 57.609 37.500 0.00 0.00 31.35 3.21
1345 3535 7.417456 GGAACAAACCTACTTCACTGGAAAAAT 60.417 37.037 0.00 0.00 31.35 1.82
1346 3536 6.127563 GGAACAAACCTACTTCACTGGAAAAA 60.128 38.462 0.00 0.00 31.35 1.94
1347 3537 5.358725 GGAACAAACCTACTTCACTGGAAAA 59.641 40.000 0.00 0.00 31.35 2.29
1348 3538 4.885325 GGAACAAACCTACTTCACTGGAAA 59.115 41.667 0.00 0.00 31.35 3.13
1350 3540 3.456644 TGGAACAAACCTACTTCACTGGA 59.543 43.478 0.00 0.00 31.92 3.86
1352 3542 4.813296 GTGGAACAAACCTACTTCACTG 57.187 45.455 0.00 0.00 44.16 3.66
1367 3557 5.551760 CACATTCAGAACCTATGTGGAAC 57.448 43.478 6.70 0.00 43.28 3.62
1371 3561 6.573664 TTTTCCACATTCAGAACCTATGTG 57.426 37.500 7.41 7.41 45.40 3.21
1398 3588 9.890629 TCACAAGTAGACATTTTAGCTTCATAT 57.109 29.630 0.00 0.00 0.00 1.78
1399 3589 9.719355 TTCACAAGTAGACATTTTAGCTTCATA 57.281 29.630 0.00 0.00 0.00 2.15
1400 3590 8.621532 TTCACAAGTAGACATTTTAGCTTCAT 57.378 30.769 0.00 0.00 0.00 2.57
1401 3591 8.342634 GTTTCACAAGTAGACATTTTAGCTTCA 58.657 33.333 0.00 0.00 0.00 3.02
1403 3593 8.451908 AGTTTCACAAGTAGACATTTTAGCTT 57.548 30.769 0.00 0.00 0.00 3.74
1404 3594 9.555727 TTAGTTTCACAAGTAGACATTTTAGCT 57.444 29.630 0.00 0.00 0.00 3.32
1441 3631 9.868277 ACTCTTTTGAAAATAAAATGTCACACA 57.132 25.926 0.00 0.00 0.00 3.72
1490 3801 7.599998 GGCTTGTCACAAAAATCACTATTTCAT 59.400 33.333 0.00 0.00 34.12 2.57
1494 3805 6.040842 ACTGGCTTGTCACAAAAATCACTATT 59.959 34.615 0.00 0.00 0.00 1.73
1499 3810 3.181477 CCACTGGCTTGTCACAAAAATCA 60.181 43.478 0.00 0.00 0.00 2.57
1500 3811 3.068024 TCCACTGGCTTGTCACAAAAATC 59.932 43.478 0.00 0.00 0.00 2.17
1502 3813 2.451490 TCCACTGGCTTGTCACAAAAA 58.549 42.857 0.00 0.00 0.00 1.94
1505 3816 2.023673 CTTTCCACTGGCTTGTCACAA 58.976 47.619 0.00 0.00 0.00 3.33
1508 3819 1.211703 TCACTTTCCACTGGCTTGTCA 59.788 47.619 0.00 0.00 0.00 3.58
1509 3820 1.967319 TCACTTTCCACTGGCTTGTC 58.033 50.000 0.00 0.00 0.00 3.18
1510 3821 2.435372 TTCACTTTCCACTGGCTTGT 57.565 45.000 0.00 0.00 0.00 3.16
1511 3822 5.649782 ATATTTCACTTTCCACTGGCTTG 57.350 39.130 0.00 0.00 0.00 4.01
1512 3823 7.349598 AGATATATTTCACTTTCCACTGGCTT 58.650 34.615 0.00 0.00 0.00 4.35
1513 3824 6.904626 AGATATATTTCACTTTCCACTGGCT 58.095 36.000 0.00 0.00 0.00 4.75
1516 3827 9.605275 TCAGAAGATATATTTCACTTTCCACTG 57.395 33.333 9.07 0.00 0.00 3.66
1692 4199 4.742417 TGTTTCACATTGCCCAATAATCG 58.258 39.130 0.00 0.00 0.00 3.34
1859 4581 5.559770 TCCAAGTAATCAGCTTCACAATGA 58.440 37.500 0.00 0.00 0.00 2.57
1863 4585 5.769662 ACATTTCCAAGTAATCAGCTTCACA 59.230 36.000 0.00 0.00 0.00 3.58
1869 4593 9.807649 ATTATTTCACATTTCCAAGTAATCAGC 57.192 29.630 0.00 0.00 0.00 4.26
1911 4636 9.237187 TCACATGTTGCTCAAATAACCTATTTA 57.763 29.630 0.00 0.00 36.29 1.40
1957 4684 6.757897 TCATTTTCCACTCGCTTATTTCAT 57.242 33.333 0.00 0.00 0.00 2.57
1968 4695 4.525912 ACCTGCATTTCATTTTCCACTC 57.474 40.909 0.00 0.00 0.00 3.51
1985 4712 6.618287 TGTTACTTCACATTTCTGAACCTG 57.382 37.500 0.00 0.00 0.00 4.00
1996 4723 9.772973 TCACTTTATGTAGTTGTTACTTCACAT 57.227 29.630 0.00 0.00 37.36 3.21
2038 4765 8.924691 CACATTTTGAAATAATCGGTTTCACAT 58.075 29.630 1.17 0.00 43.16 3.21
2078 5004 8.825667 TGTTATTTTTCTGCCACCTTTAAATC 57.174 30.769 0.00 0.00 0.00 2.17
2086 5012 4.864704 TCCTTGTTATTTTTCTGCCACC 57.135 40.909 0.00 0.00 0.00 4.61
2199 5141 9.670719 GACTTTTCTTTCCTCTTGACTAATTTG 57.329 33.333 0.00 0.00 0.00 2.32
2225 5237 6.423905 TCTCTCTTTTTCACACACTAAATCCG 59.576 38.462 0.00 0.00 0.00 4.18
2232 5244 4.162320 TCCACTCTCTCTTTTTCACACACT 59.838 41.667 0.00 0.00 0.00 3.55
2233 5245 4.442706 TCCACTCTCTCTTTTTCACACAC 58.557 43.478 0.00 0.00 0.00 3.82
2235 5247 5.407995 CAGATCCACTCTCTCTTTTTCACAC 59.592 44.000 0.00 0.00 29.16 3.82
2236 5248 5.545588 CAGATCCACTCTCTCTTTTTCACA 58.454 41.667 0.00 0.00 29.16 3.58
2237 5249 4.391523 GCAGATCCACTCTCTCTTTTTCAC 59.608 45.833 0.00 0.00 29.16 3.18
2239 5251 3.938334 GGCAGATCCACTCTCTCTTTTTC 59.062 47.826 0.00 0.00 34.01 2.29
2255 5273 4.460382 CAGGACAAAAGTAATGTGGCAGAT 59.540 41.667 0.00 0.00 0.00 2.90
2270 5288 6.294453 CCATTGTACTTTACATGCAGGACAAA 60.294 38.462 17.52 4.06 45.11 2.83
2272 5290 4.699735 CCATTGTACTTTACATGCAGGACA 59.300 41.667 4.84 1.81 38.68 4.02
2273 5291 4.700213 ACCATTGTACTTTACATGCAGGAC 59.300 41.667 4.84 0.00 38.68 3.85
2276 5295 4.142403 CCCACCATTGTACTTTACATGCAG 60.142 45.833 0.00 0.00 38.68 4.41
2328 5352 7.599245 CGTGTGTTCTATAAGGAAGTTTTCTCT 59.401 37.037 0.00 0.00 0.00 3.10
2333 5357 6.756221 ACTCGTGTGTTCTATAAGGAAGTTT 58.244 36.000 0.00 0.00 0.00 2.66
2335 5359 5.979288 ACTCGTGTGTTCTATAAGGAAGT 57.021 39.130 0.00 0.00 0.00 3.01
2336 5360 7.536855 ACTTACTCGTGTGTTCTATAAGGAAG 58.463 38.462 0.00 0.00 0.00 3.46
2339 5363 9.875675 GTATACTTACTCGTGTGTTCTATAAGG 57.124 37.037 0.00 0.00 0.00 2.69
2340 5364 9.578306 CGTATACTTACTCGTGTGTTCTATAAG 57.422 37.037 0.00 0.00 0.00 1.73
2346 5370 5.170981 GCATCGTATACTTACTCGTGTGTTC 59.829 44.000 0.00 0.00 0.00 3.18
2353 5377 4.549980 CACATCGCATCGTATACTTACTCG 59.450 45.833 0.56 0.00 0.00 4.18
2354 5378 5.450171 ACACATCGCATCGTATACTTACTC 58.550 41.667 0.56 0.00 0.00 2.59
2356 5380 5.209977 TGACACATCGCATCGTATACTTAC 58.790 41.667 0.56 0.00 0.00 2.34
2360 5384 3.629058 ACTGACACATCGCATCGTATAC 58.371 45.455 0.00 0.00 0.00 1.47
2365 5389 0.247419 GCAACTGACACATCGCATCG 60.247 55.000 0.00 0.00 0.00 3.84
2373 5397 2.862541 AGCCAATAAGCAACTGACACA 58.137 42.857 0.00 0.00 34.23 3.72
2378 5402 2.357009 CTGCCTAGCCAATAAGCAACTG 59.643 50.000 0.00 0.00 30.43 3.16
2380 5404 1.678101 CCTGCCTAGCCAATAAGCAAC 59.322 52.381 0.00 0.00 30.43 4.17
2382 5406 0.918983 ACCTGCCTAGCCAATAAGCA 59.081 50.000 0.00 0.00 34.23 3.91
2396 5420 1.221021 GGTACCTACTGGCACCTGC 59.779 63.158 4.06 0.00 44.64 4.85
2401 5425 1.550130 GGTGCTGGTACCTACTGGCA 61.550 60.000 14.36 12.27 37.74 4.92
2402 5426 1.221021 GGTGCTGGTACCTACTGGC 59.779 63.158 14.36 9.93 37.74 4.85
2410 5434 2.841442 AACTTGAGAGGTGCTGGTAC 57.159 50.000 0.00 0.00 0.00 3.34
2411 5435 2.038557 GGAAACTTGAGAGGTGCTGGTA 59.961 50.000 0.00 0.00 0.00 3.25
2413 5437 1.528129 GGAAACTTGAGAGGTGCTGG 58.472 55.000 0.00 0.00 0.00 4.85
2415 5439 0.603975 GCGGAAACTTGAGAGGTGCT 60.604 55.000 0.00 0.00 0.00 4.40
2416 5440 0.603975 AGCGGAAACTTGAGAGGTGC 60.604 55.000 0.00 0.00 0.00 5.01
2417 5441 1.884235 AAGCGGAAACTTGAGAGGTG 58.116 50.000 0.00 0.00 0.00 4.00
2418 5442 2.640316 AAAGCGGAAACTTGAGAGGT 57.360 45.000 0.00 0.00 0.00 3.85
2421 5445 2.370849 ACCCTAAAGCGGAAACTTGAGA 59.629 45.455 0.00 0.00 30.53 3.27
2422 5446 2.742589 GACCCTAAAGCGGAAACTTGAG 59.257 50.000 0.00 0.00 0.00 3.02
2423 5447 2.370849 AGACCCTAAAGCGGAAACTTGA 59.629 45.455 0.00 0.00 0.00 3.02
2427 5451 3.606595 AGTAGACCCTAAAGCGGAAAC 57.393 47.619 0.00 0.00 0.00 2.78
2428 5452 3.325716 ACAAGTAGACCCTAAAGCGGAAA 59.674 43.478 0.00 0.00 0.00 3.13
2429 5453 2.901839 ACAAGTAGACCCTAAAGCGGAA 59.098 45.455 0.00 0.00 0.00 4.30
2430 5454 2.532843 ACAAGTAGACCCTAAAGCGGA 58.467 47.619 0.00 0.00 0.00 5.54
2432 5456 4.189639 AGAACAAGTAGACCCTAAAGCG 57.810 45.455 0.00 0.00 0.00 4.68
2433 5457 6.932960 TGTTTAGAACAAGTAGACCCTAAAGC 59.067 38.462 0.00 0.00 38.72 3.51
2434 5458 8.148999 AGTGTTTAGAACAAGTAGACCCTAAAG 58.851 37.037 0.00 0.00 44.16 1.85
2435 5459 7.929785 CAGTGTTTAGAACAAGTAGACCCTAAA 59.070 37.037 0.00 0.00 44.16 1.85
2436 5460 7.439381 CAGTGTTTAGAACAAGTAGACCCTAA 58.561 38.462 0.00 0.00 44.16 2.69
2437 5461 6.517864 GCAGTGTTTAGAACAAGTAGACCCTA 60.518 42.308 0.00 0.00 44.16 3.53
2438 5462 5.742255 GCAGTGTTTAGAACAAGTAGACCCT 60.742 44.000 0.00 0.00 44.16 4.34
2439 5463 4.451435 GCAGTGTTTAGAACAAGTAGACCC 59.549 45.833 0.00 0.00 44.16 4.46
2440 5464 5.298347 AGCAGTGTTTAGAACAAGTAGACC 58.702 41.667 0.00 0.00 44.16 3.85
2441 5465 7.146648 AGTAGCAGTGTTTAGAACAAGTAGAC 58.853 38.462 0.00 0.00 44.16 2.59
2442 5466 7.286215 AGTAGCAGTGTTTAGAACAAGTAGA 57.714 36.000 0.00 0.00 44.16 2.59
2443 5467 7.652105 TCAAGTAGCAGTGTTTAGAACAAGTAG 59.348 37.037 0.00 0.00 44.16 2.57
2445 5469 6.346096 TCAAGTAGCAGTGTTTAGAACAAGT 58.654 36.000 0.00 0.00 44.16 3.16
2459 5586 8.939929 TGAGAAAAGTTTCATATCAAGTAGCAG 58.060 33.333 6.56 0.00 39.61 4.24
2461 5588 9.548208 GTTGAGAAAAGTTTCATATCAAGTAGC 57.452 33.333 6.56 0.00 39.61 3.58
2476 5603 8.882736 GGTTGATGAAAAATTGTTGAGAAAAGT 58.117 29.630 0.00 0.00 0.00 2.66
2488 5615 5.782893 TCCAAGACGGTTGATGAAAAATT 57.217 34.783 1.56 0.00 35.57 1.82
2496 5623 9.449719 GGATATATTAAATCCAAGACGGTTGAT 57.550 33.333 1.56 0.00 42.21 2.57
2497 5624 8.656806 AGGATATATTAAATCCAAGACGGTTGA 58.343 33.333 7.29 0.00 44.62 3.18
2542 5814 5.718146 TCAGTGTTGCTTTTCACAATGAAA 58.282 33.333 0.27 0.00 43.84 2.69
2544 5816 4.979943 TCAGTGTTGCTTTTCACAATGA 57.020 36.364 0.00 0.00 35.32 2.57
2545 5817 5.806502 TCTTTCAGTGTTGCTTTTCACAATG 59.193 36.000 0.00 0.00 37.07 2.82
2546 5818 5.964758 TCTTTCAGTGTTGCTTTTCACAAT 58.035 33.333 0.00 0.00 37.07 2.71
2549 5821 5.626955 GCTATCTTTCAGTGTTGCTTTTCAC 59.373 40.000 0.00 0.00 35.13 3.18
2556 5888 2.813754 TGGTGCTATCTTTCAGTGTTGC 59.186 45.455 0.00 0.00 0.00 4.17
2560 5892 7.619050 AGGATATATGGTGCTATCTTTCAGTG 58.381 38.462 0.00 0.00 0.00 3.66
2572 5936 5.059833 GGCAGCTAATAGGATATATGGTGC 58.940 45.833 10.88 10.88 43.72 5.01
2583 6151 3.550437 ACACTCTTGGCAGCTAATAGG 57.450 47.619 8.50 1.32 0.00 2.57
2588 6156 6.294361 TCTTAATTACACTCTTGGCAGCTA 57.706 37.500 0.00 0.00 0.00 3.32
2650 6223 1.369625 GAGTAGCCGTCAAACCATGG 58.630 55.000 11.19 11.19 0.00 3.66
2662 6235 2.273538 TCGACATAGAGGGAGTAGCC 57.726 55.000 0.00 0.00 0.00 3.93
2663 6236 4.857509 ATTTCGACATAGAGGGAGTAGC 57.142 45.455 0.00 0.00 0.00 3.58
2895 6497 5.239306 TCAGTGTTCAGTCCTTGCTAAAATG 59.761 40.000 0.00 0.00 0.00 2.32
2901 6503 3.498774 ATTCAGTGTTCAGTCCTTGCT 57.501 42.857 0.00 0.00 0.00 3.91
2905 6507 4.780021 AGATGGTATTCAGTGTTCAGTCCT 59.220 41.667 0.00 0.00 0.00 3.85
2909 6511 5.089970 TGGAGATGGTATTCAGTGTTCAG 57.910 43.478 0.00 0.00 0.00 3.02
2913 6515 6.957631 TGTAAATGGAGATGGTATTCAGTGT 58.042 36.000 0.00 0.00 0.00 3.55
2935 6537 8.773404 AGAAAAGTTATACGCTCTGTAATTGT 57.227 30.769 0.00 0.00 36.44 2.71
2936 6538 8.869897 TGAGAAAAGTTATACGCTCTGTAATTG 58.130 33.333 0.00 0.00 36.44 2.32
2978 6580 7.368480 TCGATAAATTCACATGCATATCCTG 57.632 36.000 0.00 0.00 0.00 3.86
3012 6616 9.202273 GAATCTGCAATTAGTAGGAGTGAATAG 57.798 37.037 0.00 0.00 0.00 1.73
3014 6618 7.800092 AGAATCTGCAATTAGTAGGAGTGAAT 58.200 34.615 0.00 0.00 0.00 2.57
3096 6711 9.507329 TTCTTCCTGATTTCATACTATAATGCC 57.493 33.333 0.00 0.00 0.00 4.40
3238 6918 0.619832 AAGCAGGAGGGCTCATCTCA 60.620 55.000 0.00 0.00 45.07 3.27
3261 6941 7.881775 ATTTTTGCGGGATTATTAAGAGACT 57.118 32.000 0.00 0.00 0.00 3.24
3273 6953 1.472480 CGGACTCAATTTTTGCGGGAT 59.528 47.619 0.00 0.00 0.00 3.85
3290 6970 1.343465 GTTGACTCCAGAGAAACCGGA 59.657 52.381 9.46 0.00 0.00 5.14
3299 6979 2.166459 CGGAAGCATAGTTGACTCCAGA 59.834 50.000 0.00 0.00 0.00 3.86
3346 7026 4.019771 TGCATATGAAGGTGTCCACTTACA 60.020 41.667 6.97 0.00 0.00 2.41
3490 7203 5.995282 TCCTTTTATGCCATACGACCTAATG 59.005 40.000 0.00 0.00 0.00 1.90
3494 7207 3.744530 GCTCCTTTTATGCCATACGACCT 60.745 47.826 0.00 0.00 0.00 3.85
3497 7210 3.552132 TGCTCCTTTTATGCCATACGA 57.448 42.857 0.00 0.00 0.00 3.43
3519 7232 5.224888 CAAAGCTTATGATGTTGTTGCAGT 58.775 37.500 0.00 0.00 0.00 4.40
3520 7233 4.090930 GCAAAGCTTATGATGTTGTTGCAG 59.909 41.667 0.00 0.00 39.82 4.41
3543 7256 4.869215 TGGATTGCCATAATTAATGTGCG 58.131 39.130 0.00 0.00 39.92 5.34
3544 7257 6.088016 TCTGGATTGCCATAATTAATGTGC 57.912 37.500 0.00 0.00 44.91 4.57
3550 7263 6.096705 CCAAACACTCTGGATTGCCATAATTA 59.903 38.462 0.00 0.00 44.91 1.40
3555 7268 2.173519 CCAAACACTCTGGATTGCCAT 58.826 47.619 0.00 0.00 44.91 4.40
3557 7270 1.270550 CACCAAACACTCTGGATTGCC 59.729 52.381 0.00 0.00 37.40 4.52
3575 7288 2.674796 AAGCGAGGAGTGTAATCCAC 57.325 50.000 0.88 0.00 42.26 4.02
3577 7290 6.369065 CCAATAATAAGCGAGGAGTGTAATCC 59.631 42.308 0.00 0.00 39.89 3.01
3583 7296 6.018180 GGTTAACCAATAATAAGCGAGGAGTG 60.018 42.308 20.12 0.00 35.64 3.51
3602 7315 9.288576 ACCTTATACCTAACTTGTTTGGTTAAC 57.711 33.333 20.64 0.00 37.26 2.01
3604 7317 9.942850 GTACCTTATACCTAACTTGTTTGGTTA 57.057 33.333 20.64 12.12 34.33 2.85
3605 7318 8.663167 AGTACCTTATACCTAACTTGTTTGGTT 58.337 33.333 20.64 12.85 34.33 3.67
3606 7319 8.211030 AGTACCTTATACCTAACTTGTTTGGT 57.789 34.615 19.69 19.69 36.66 3.67
3607 7320 8.943002 CAAGTACCTTATACCTAACTTGTTTGG 58.057 37.037 11.33 11.33 39.15 3.28
3616 7329 7.795534 TGTCCAACAAGTACCTTATACCTAA 57.204 36.000 0.00 0.00 0.00 2.69
3621 7334 7.490657 AGTGATGTCCAACAAGTACCTTATA 57.509 36.000 0.00 0.00 0.00 0.98
3630 7367 9.559958 GATTAATTGTAAGTGATGTCCAACAAG 57.440 33.333 0.00 0.00 31.09 3.16
3676 7421 0.037975 TGGGAAGTTTAGTCCGTCGC 60.038 55.000 0.00 0.00 35.86 5.19
3686 7431 3.495434 TGGTACGTCAATGGGAAGTTT 57.505 42.857 0.00 0.00 39.10 2.66
3690 7435 4.620589 TTACTTGGTACGTCAATGGGAA 57.379 40.909 0.00 0.00 0.00 3.97
3725 7470 1.270041 GCCTCCATCTTCTCCATCGTC 60.270 57.143 0.00 0.00 0.00 4.20
3731 7476 0.106967 GGTTGGCCTCCATCTTCTCC 60.107 60.000 3.32 0.00 31.53 3.71
3751 7496 0.392998 CCTCAACTGTTGCCGGCTAT 60.393 55.000 29.70 1.49 0.00 2.97
3762 7507 3.743521 TGGACAACATCTTCCTCAACTG 58.256 45.455 0.00 0.00 32.55 3.16
3770 7515 6.039829 GGAATAGGGAATTGGACAACATCTTC 59.960 42.308 0.00 0.00 0.00 2.87
3791 7536 0.597637 CGCCGACGCTGATTAGGAAT 60.598 55.000 0.00 0.00 0.00 3.01
3831 7576 1.086696 GGTCGGGTCATGATGTTGTG 58.913 55.000 0.00 0.00 0.00 3.33
3865 7610 2.663852 GGTGTGGGACGTCGGTTG 60.664 66.667 9.92 0.00 0.00 3.77
3904 7649 3.688694 AGTTGTACAAGGCCGTAATGA 57.311 42.857 8.98 0.00 0.00 2.57
3959 7704 2.515991 ACCGGTGTGCACAAGGTG 60.516 61.111 34.09 21.00 40.57 4.00
3971 7716 1.450211 GCACATATAGCCCACCGGT 59.550 57.895 0.00 0.00 0.00 5.28
3985 7733 1.080772 GTCATGAGGTCGTCGCACA 60.081 57.895 0.00 0.00 0.00 4.57
4118 7866 3.676049 CGTATGCTGAAGGAGTTGTGCTA 60.676 47.826 0.00 0.00 0.00 3.49
4126 7874 4.511826 GGATTTTACCGTATGCTGAAGGAG 59.488 45.833 0.00 0.00 0.00 3.69
4130 7878 7.771361 TCTTAATGGATTTTACCGTATGCTGAA 59.229 33.333 0.00 0.00 0.00 3.02
4176 7925 2.198827 TGGTTGCCGAATTCATGACT 57.801 45.000 6.22 0.00 0.00 3.41
4194 7943 9.747293 TCAACATGCCATAACAACATAAATATG 57.253 29.630 0.00 0.00 39.55 1.78
4246 8008 1.001764 CTTCACAGCATGAGGCCCA 60.002 57.895 0.00 0.00 46.50 5.36
4260 8022 4.284550 GGTGCACAGGGGCCTTCA 62.285 66.667 20.43 0.00 0.00 3.02
4288 8050 1.203376 TCTAGGGTTCCCACATGGTGA 60.203 52.381 10.73 0.00 35.23 4.02
4298 8060 5.302313 CAGTACCAATACTCTCTAGGGTTCC 59.698 48.000 0.00 0.00 39.80 3.62
4299 8061 5.302313 CCAGTACCAATACTCTCTAGGGTTC 59.698 48.000 0.00 0.00 39.80 3.62
4304 8066 4.515944 CGTCCCAGTACCAATACTCTCTAG 59.484 50.000 0.00 0.00 39.80 2.43
4305 8067 4.080129 ACGTCCCAGTACCAATACTCTCTA 60.080 45.833 0.00 0.00 39.80 2.43
4307 8069 3.022406 ACGTCCCAGTACCAATACTCTC 58.978 50.000 0.00 0.00 39.80 3.20
4308 8070 3.022406 GACGTCCCAGTACCAATACTCT 58.978 50.000 3.51 0.00 39.80 3.24
4328 8096 2.154798 CTGCTCCGTTGGGTTCTCGA 62.155 60.000 0.00 0.00 33.83 4.04
4357 8125 1.810151 GAGAAATGTAGTTGCGGCCAA 59.190 47.619 2.24 0.00 0.00 4.52
4388 8156 1.978080 ATGGGCGCTGTGAATTGCA 60.978 52.632 7.64 0.00 0.00 4.08
4431 8199 9.900264 GCCGAAAACATAAACATAAATCATTTC 57.100 29.630 0.00 0.00 0.00 2.17
4454 8222 6.483687 GTTTTATTGTGGATACTACAAGCCG 58.516 40.000 6.79 0.00 40.92 5.52
4518 8287 9.699703 GGATACTTAAAGCCAAAAACATAAACA 57.300 29.630 0.00 0.00 0.00 2.83
4519 8288 9.699703 TGGATACTTAAAGCCAAAAACATAAAC 57.300 29.630 0.00 0.00 37.61 2.01
4523 8292 7.296628 TGTGGATACTTAAAGCCAAAAACAT 57.703 32.000 0.00 0.00 37.61 2.71
4524 8293 6.716934 TGTGGATACTTAAAGCCAAAAACA 57.283 33.333 0.00 0.00 37.61 2.83
4525 8294 9.699703 TTATTGTGGATACTTAAAGCCAAAAAC 57.300 29.630 0.00 0.00 31.81 2.43
4526 8295 9.921637 CTTATTGTGGATACTTAAAGCCAAAAA 57.078 29.630 0.00 0.00 31.81 1.94
4527 8296 9.303116 TCTTATTGTGGATACTTAAAGCCAAAA 57.697 29.630 0.00 0.00 32.53 2.44
4528 8297 8.871629 TCTTATTGTGGATACTTAAAGCCAAA 57.128 30.769 0.00 0.00 37.61 3.28
4529 8298 7.067008 GCTCTTATTGTGGATACTTAAAGCCAA 59.933 37.037 0.00 0.00 37.61 4.52
4530 8299 6.542370 GCTCTTATTGTGGATACTTAAAGCCA 59.458 38.462 0.00 0.00 37.61 4.75
4531 8300 6.292919 CGCTCTTATTGTGGATACTTAAAGCC 60.293 42.308 0.00 0.00 37.61 4.35
4532 8301 6.479001 TCGCTCTTATTGTGGATACTTAAAGC 59.521 38.462 0.00 0.00 37.61 3.51
4533 8302 8.594881 ATCGCTCTTATTGTGGATACTTAAAG 57.405 34.615 0.00 0.00 37.61 1.85
4534 8303 8.958119 AATCGCTCTTATTGTGGATACTTAAA 57.042 30.769 0.00 0.00 37.61 1.52
4535 8304 8.201464 TGAATCGCTCTTATTGTGGATACTTAA 58.799 33.333 0.00 0.00 37.61 1.85
4536 8305 7.722363 TGAATCGCTCTTATTGTGGATACTTA 58.278 34.615 0.00 0.00 37.61 2.24
4537 8306 6.582636 TGAATCGCTCTTATTGTGGATACTT 58.417 36.000 0.00 0.00 37.61 2.24
4552 8321 2.349886 GGTTCACACAGATGAATCGCTC 59.650 50.000 0.00 0.00 40.60 5.03
4558 8327 8.806429 AAATACATATGGTTCACACAGATGAA 57.194 30.769 7.80 0.00 39.28 2.57
4578 8347 9.598517 TTAGAATTCATGGCAAATGGAAAATAC 57.401 29.630 8.44 0.00 0.00 1.89
4611 8383 9.628746 CATTGAAAGTTATGATCAACACAATGA 57.371 29.630 22.74 4.67 41.82 2.57
4628 8400 4.917385 TGTGCCACTATACCATTGAAAGT 58.083 39.130 0.00 0.00 0.00 2.66
4643 8415 0.813184 CCATGGACTCAATGTGCCAC 59.187 55.000 5.56 0.00 36.06 5.01
4681 8453 4.012895 GCACACCGCCAACTGTCG 62.013 66.667 0.00 0.00 32.94 4.35
4684 8456 0.595588 TTATTGCACACCGCCAACTG 59.404 50.000 0.00 0.00 41.33 3.16
4720 8492 7.455641 TTTTTCAACACTAAAGACTGAACCA 57.544 32.000 0.00 0.00 0.00 3.67
4726 8498 7.881775 AGTCCATTTTTCAACACTAAAGACT 57.118 32.000 0.00 0.00 0.00 3.24
4783 8572 9.226345 GAGAAGTCACTTTGTTTATTTCTTGTG 57.774 33.333 0.00 0.00 0.00 3.33
4792 8581 3.135994 GCCGGAGAAGTCACTTTGTTTA 58.864 45.455 5.05 0.00 0.00 2.01
4801 8590 3.899726 AGACTATAAGCCGGAGAAGTCA 58.100 45.455 5.05 0.00 36.63 3.41
4804 8593 5.278561 CCTGTAAGACTATAAGCCGGAGAAG 60.279 48.000 5.05 0.00 34.07 2.85
4805 8594 4.583489 CCTGTAAGACTATAAGCCGGAGAA 59.417 45.833 5.05 0.00 34.07 2.87
4813 8602 4.649674 TGTGAGCCCCTGTAAGACTATAAG 59.350 45.833 0.00 0.00 34.07 1.73
4819 8608 1.071699 TGTTGTGAGCCCCTGTAAGAC 59.928 52.381 0.00 0.00 34.07 3.01
4826 8615 4.780021 CCTAGATATATGTTGTGAGCCCCT 59.220 45.833 0.00 0.00 0.00 4.79
4828 8617 5.625656 GCTCCTAGATATATGTTGTGAGCCC 60.626 48.000 16.14 1.25 37.36 5.19
4829 8618 5.186797 AGCTCCTAGATATATGTTGTGAGCC 59.813 44.000 19.82 10.35 42.69 4.70
4830 8619 6.279513 AGCTCCTAGATATATGTTGTGAGC 57.720 41.667 17.78 17.78 42.18 4.26
4833 8622 6.983307 GCCATAGCTCCTAGATATATGTTGTG 59.017 42.308 0.00 0.00 35.50 3.33
4855 8644 7.062749 TGAGAGTTTAGAGTTTCTTTAGCCA 57.937 36.000 0.00 0.00 0.00 4.75
4857 8646 8.996024 AGATGAGAGTTTAGAGTTTCTTTAGC 57.004 34.615 0.00 0.00 0.00 3.09
4878 8667 8.292444 TCCCCAACAATTAAGTGATAAAGATG 57.708 34.615 10.35 0.00 0.00 2.90
4880 8669 7.094549 CGTTCCCCAACAATTAAGTGATAAAGA 60.095 37.037 10.35 0.00 32.14 2.52
5024 8834 1.806542 ACGTACGACTACATCAACCGT 59.193 47.619 24.41 0.00 37.27 4.83
5171 8981 3.342719 ACATTATCATTGTCACCACGCA 58.657 40.909 0.00 0.00 0.00 5.24
5182 8992 2.806244 GCGCCGGTAGAACATTATCATT 59.194 45.455 1.90 0.00 0.00 2.57
5188 8998 1.449601 CCTGCGCCGGTAGAACATT 60.450 57.895 10.08 0.00 0.00 2.71
5372 10122 1.627297 GGATTCTCCTCCTTGGGCGT 61.627 60.000 0.00 0.00 36.20 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.