Multiple sequence alignment - TraesCS7B01G252800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G252800 chr7B 100.000 4490 0 0 1 4490 465953635 465949146 0.000000e+00 8292.0
1 TraesCS7B01G252800 chr7D 94.976 1911 68 9 1049 2952 448701340 448699451 0.000000e+00 2972.0
2 TraesCS7B01G252800 chr7D 98.837 86 1 0 4405 4490 448691514 448691429 2.160000e-33 154.0
3 TraesCS7B01G252800 chr7D 100.000 59 0 0 956 1014 448701387 448701329 4.750000e-20 110.0
4 TraesCS7B01G252800 chr7A 96.015 1054 39 1 962 2012 547357694 547358747 0.000000e+00 1711.0
5 TraesCS7B01G252800 chr7A 95.718 794 26 2 1994 2781 547358923 547359714 0.000000e+00 1271.0
6 TraesCS7B01G252800 chr7A 92.380 748 39 9 2937 3674 547359896 547360635 0.000000e+00 1050.0
7 TraesCS7B01G252800 chr7A 88.316 291 27 3 3750 4037 547360777 547361063 4.300000e-90 342.0
8 TraesCS7B01G252800 chr7A 94.776 134 7 0 2819 2952 547359716 547359849 4.550000e-50 209.0
9 TraesCS7B01G252800 chr7A 86.164 159 22 0 4075 4233 547361529 547361687 5.970000e-39 172.0
10 TraesCS7B01G252800 chr7A 91.200 125 7 2 4237 4360 547361735 547361856 2.780000e-37 167.0
11 TraesCS7B01G252800 chr7A 93.137 102 6 1 4390 4490 547362373 547362474 1.010000e-31 148.0
12 TraesCS7B01G252800 chr6A 86.162 925 95 23 1 899 206854826 206853909 0.000000e+00 968.0
13 TraesCS7B01G252800 chr4D 79.282 1197 159 51 1001 2134 490395228 490394058 0.000000e+00 754.0
14 TraesCS7B01G252800 chr4B 80.118 850 133 23 1001 1838 629997347 629996522 6.430000e-168 601.0
15 TraesCS7B01G252800 chr4B 81.639 659 91 16 2010 2652 630038623 630039267 1.850000e-143 520.0
16 TraesCS7B01G252800 chr4B 79.367 727 122 17 1001 1722 630021623 630022326 1.880000e-133 486.0
17 TraesCS7B01G252800 chr4B 82.514 183 28 2 1756 1935 630031350 630031531 1.670000e-34 158.0
18 TraesCS7B01G252800 chr4B 88.976 127 14 0 1057 1183 653277718 653277844 1.670000e-34 158.0
19 TraesCS7B01G252800 chr4B 81.081 185 29 3 1057 1235 82277249 82277065 4.680000e-30 143.0
20 TraesCS7B01G252800 chr5A 84.553 246 35 2 1001 1243 690348712 690348467 1.610000e-59 241.0
21 TraesCS7B01G252800 chr5A 85.981 214 30 0 1026 1239 690963272 690963059 3.490000e-56 230.0
22 TraesCS7B01G252800 chr5A 79.061 277 58 0 2372 2648 690347378 690347102 1.650000e-44 191.0
23 TraesCS7B01G252800 chrUn 86.486 185 25 0 1049 1233 126928505 126928689 2.120000e-48 204.0
24 TraesCS7B01G252800 chrUn 89.167 120 13 0 1064 1183 126858093 126858212 2.800000e-32 150.0
25 TraesCS7B01G252800 chr6D 97.143 35 1 0 833 867 163366811 163366845 4.850000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G252800 chr7B 465949146 465953635 4489 True 8292.00 8292 100.00000 1 4490 1 chr7B.!!$R1 4489
1 TraesCS7B01G252800 chr7D 448699451 448701387 1936 True 1541.00 2972 97.48800 956 2952 2 chr7D.!!$R2 1996
2 TraesCS7B01G252800 chr7A 547357694 547362474 4780 False 633.75 1711 92.21325 962 4490 8 chr7A.!!$F1 3528
3 TraesCS7B01G252800 chr6A 206853909 206854826 917 True 968.00 968 86.16200 1 899 1 chr6A.!!$R1 898
4 TraesCS7B01G252800 chr4D 490394058 490395228 1170 True 754.00 754 79.28200 1001 2134 1 chr4D.!!$R1 1133
5 TraesCS7B01G252800 chr4B 629996522 629997347 825 True 601.00 601 80.11800 1001 1838 1 chr4B.!!$R2 837
6 TraesCS7B01G252800 chr4B 630038623 630039267 644 False 520.00 520 81.63900 2010 2652 1 chr4B.!!$F3 642
7 TraesCS7B01G252800 chr4B 630021623 630022326 703 False 486.00 486 79.36700 1001 1722 1 chr4B.!!$F1 721
8 TraesCS7B01G252800 chr5A 690347102 690348712 1610 True 216.00 241 81.80700 1001 2648 2 chr5A.!!$R2 1647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 937 0.027586 GCTCTCTCGCTCTCTCGTTC 59.972 60.0 0.0 0.0 0.00 3.95 F
1519 1579 0.329596 ATCTGGGTTGGAGTTGGAGC 59.670 55.0 0.0 0.0 0.00 4.70 F
3062 3596 0.248866 GAAGTTTGGTTGTGCCCGTG 60.249 55.0 0.0 0.0 36.04 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1899 1980 0.251354 GGGCATTGCTCTCTGTCTCA 59.749 55.0 8.82 0.0 0.00 3.27 R
3274 3808 0.252239 ACCCCCTTTTCTTGCCATCC 60.252 55.0 0.00 0.0 0.00 3.51 R
4055 4699 0.036105 ATGTCATGCAGTGGCTTCGA 60.036 50.0 0.00 0.0 41.91 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.047877 GGCGACACCAAAGACCGG 61.048 66.667 0.00 0.00 38.86 5.28
37 38 0.883370 GACACCAAAGACCGGTCACC 60.883 60.000 35.00 10.80 33.25 4.02
90 91 1.595466 GCTCTCCAGCTCATCCATTG 58.405 55.000 0.00 0.00 43.09 2.82
97 98 0.538584 AGCTCATCCATTGCACGAGA 59.461 50.000 0.00 0.00 0.00 4.04
143 144 1.561643 GCTCCATCTCCGGATCCATA 58.438 55.000 13.41 0.00 33.56 2.74
160 161 1.966901 ATATCAACCACCAGCCGCGA 61.967 55.000 8.23 0.00 0.00 5.87
161 162 2.845752 TATCAACCACCAGCCGCGAC 62.846 60.000 8.23 0.00 0.00 5.19
224 229 2.781406 GAGGAGGAGGTGGGAGGT 59.219 66.667 0.00 0.00 0.00 3.85
255 260 2.045926 CCCTGCACCACAGTAGGC 60.046 66.667 0.00 0.00 45.68 3.93
267 272 4.867599 GTAGGCCCCGACGAAGCG 62.868 72.222 0.00 0.00 0.00 4.68
299 304 4.760047 CCGACGAGCCACCTTGGG 62.760 72.222 0.00 0.00 38.19 4.12
365 370 0.164647 CGCTTGCACTGAGTAGCAAC 59.835 55.000 15.11 12.00 44.98 4.17
372 377 1.741770 CTGAGTAGCAACGTGCCCC 60.742 63.158 6.39 0.00 46.52 5.80
373 378 2.345991 GAGTAGCAACGTGCCCCA 59.654 61.111 6.39 0.00 46.52 4.96
379 384 3.977244 CAACGTGCCCCAACAGCC 61.977 66.667 0.00 0.00 0.00 4.85
402 407 1.066752 CCGGAGACACACAACGTCA 59.933 57.895 0.00 0.00 35.77 4.35
483 488 4.681978 GGCGACACCTCCTTGCGT 62.682 66.667 0.00 0.00 34.51 5.24
484 489 3.414700 GCGACACCTCCTTGCGTG 61.415 66.667 0.00 0.00 36.04 5.34
485 490 2.738521 CGACACCTCCTTGCGTGG 60.739 66.667 0.00 0.00 34.18 4.94
486 491 2.358737 GACACCTCCTTGCGTGGG 60.359 66.667 0.00 0.00 34.18 4.61
487 492 3.901797 GACACCTCCTTGCGTGGGG 62.902 68.421 0.00 0.00 34.46 4.96
651 688 2.037053 CCTCAGATGCCGACGAGAT 58.963 57.895 0.00 0.00 0.00 2.75
652 689 0.039617 CCTCAGATGCCGACGAGATC 60.040 60.000 0.00 0.00 0.00 2.75
663 700 0.902531 GACGAGATCCCCAAACCAGA 59.097 55.000 0.00 0.00 0.00 3.86
666 703 1.134670 CGAGATCCCCAAACCAGAGAC 60.135 57.143 0.00 0.00 0.00 3.36
670 707 0.761323 TCCCCAAACCAGAGACGACA 60.761 55.000 0.00 0.00 0.00 4.35
671 708 0.320771 CCCCAAACCAGAGACGACAG 60.321 60.000 0.00 0.00 0.00 3.51
682 719 4.988716 ACGACAGGACGCTCCCCA 62.989 66.667 0.00 0.00 37.19 4.96
683 720 3.461773 CGACAGGACGCTCCCCAT 61.462 66.667 1.06 0.00 37.19 4.00
685 722 3.391665 GACAGGACGCTCCCCATGG 62.392 68.421 4.14 4.14 37.19 3.66
744 781 3.864686 CGCCGGCAATGGAGAACG 61.865 66.667 28.98 0.98 0.00 3.95
749 786 1.452108 GGCAATGGAGAACGGGGAG 60.452 63.158 0.00 0.00 0.00 4.30
763 800 1.541672 GGGAGAGGGAGGAGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
769 806 2.123640 GGAGGAGAGGAGGGGACG 60.124 72.222 0.00 0.00 0.00 4.79
773 810 2.829458 GAGAGGAGGGGACGACCG 60.829 72.222 0.00 0.00 41.60 4.79
775 812 4.755507 GAGGAGGGGACGACCGGT 62.756 72.222 6.92 6.92 41.60 5.28
779 816 3.933048 GAGGGGACGACCGGTGAGA 62.933 68.421 14.63 0.00 41.60 3.27
781 818 2.360852 GGGACGACCGGTGAGAGA 60.361 66.667 14.63 0.00 36.97 3.10
886 924 3.749870 AGGGGCCTCTCGCTCTCT 61.750 66.667 0.00 0.00 38.42 3.10
888 926 3.591835 GGGCCTCTCGCTCTCTCG 61.592 72.222 0.84 0.00 33.85 4.04
895 933 0.529773 TCTCGCTCTCTCGCTCTCTC 60.530 60.000 0.00 0.00 0.00 3.20
899 937 0.027586 GCTCTCTCGCTCTCTCGTTC 59.972 60.000 0.00 0.00 0.00 3.95
900 938 0.655733 CTCTCTCGCTCTCTCGTTCC 59.344 60.000 0.00 0.00 0.00 3.62
901 939 1.084935 TCTCTCGCTCTCTCGTTCCG 61.085 60.000 0.00 0.00 0.00 4.30
902 940 2.277628 CTCGCTCTCTCGTTCCGC 60.278 66.667 0.00 0.00 0.00 5.54
903 941 3.743091 CTCGCTCTCTCGTTCCGCC 62.743 68.421 0.00 0.00 0.00 6.13
904 942 4.856607 CGCTCTCTCGTTCCGCCC 62.857 72.222 0.00 0.00 0.00 6.13
905 943 3.760035 GCTCTCTCGTTCCGCCCA 61.760 66.667 0.00 0.00 0.00 5.36
906 944 2.182030 CTCTCTCGTTCCGCCCAC 59.818 66.667 0.00 0.00 0.00 4.61
907 945 3.358076 CTCTCTCGTTCCGCCCACC 62.358 68.421 0.00 0.00 0.00 4.61
908 946 4.796231 CTCTCGTTCCGCCCACCG 62.796 72.222 0.00 0.00 0.00 4.94
913 951 4.309950 GTTCCGCCCACCGACAGT 62.310 66.667 0.00 0.00 40.02 3.55
914 952 4.308458 TTCCGCCCACCGACAGTG 62.308 66.667 0.00 0.00 46.83 3.66
924 962 2.156343 ACCGACAGTGAAGAAAGAGC 57.844 50.000 0.00 0.00 0.00 4.09
925 963 1.689273 ACCGACAGTGAAGAAAGAGCT 59.311 47.619 0.00 0.00 0.00 4.09
926 964 2.891580 ACCGACAGTGAAGAAAGAGCTA 59.108 45.455 0.00 0.00 0.00 3.32
927 965 3.321111 ACCGACAGTGAAGAAAGAGCTAA 59.679 43.478 0.00 0.00 0.00 3.09
928 966 4.021016 ACCGACAGTGAAGAAAGAGCTAAT 60.021 41.667 0.00 0.00 0.00 1.73
929 967 4.328440 CCGACAGTGAAGAAAGAGCTAATG 59.672 45.833 0.00 0.00 0.00 1.90
930 968 4.201666 CGACAGTGAAGAAAGAGCTAATGC 60.202 45.833 0.00 0.00 40.05 3.56
931 969 3.681897 ACAGTGAAGAAAGAGCTAATGCG 59.318 43.478 0.00 0.00 45.42 4.73
932 970 3.681897 CAGTGAAGAAAGAGCTAATGCGT 59.318 43.478 0.00 0.00 45.42 5.24
933 971 3.929610 AGTGAAGAAAGAGCTAATGCGTC 59.070 43.478 0.00 0.00 45.42 5.19
934 972 3.062774 GTGAAGAAAGAGCTAATGCGTCC 59.937 47.826 0.00 0.00 45.42 4.79
935 973 3.262420 GAAGAAAGAGCTAATGCGTCCA 58.738 45.455 0.00 0.00 45.42 4.02
936 974 2.898705 AGAAAGAGCTAATGCGTCCAG 58.101 47.619 0.00 0.00 45.42 3.86
1047 1088 1.601419 TTCCCGAGCTAGGTCCAACG 61.601 60.000 16.06 5.13 0.00 4.10
1059 1100 2.685380 CCAACGGGAGGAGGAGCT 60.685 66.667 0.00 0.00 35.59 4.09
1108 1150 1.684049 CTTCTCCAGGTCCTCGCCT 60.684 63.158 0.00 0.00 39.99 5.52
1208 1250 4.052229 CACCTTCCGCGACCTCGT 62.052 66.667 8.23 0.00 42.22 4.18
1397 1457 2.586792 GGTGGAGCTCCGCTTCAT 59.413 61.111 38.00 0.00 46.58 2.57
1407 1467 1.403679 CTCCGCTTCATCGTCTCTCTT 59.596 52.381 0.00 0.00 0.00 2.85
1519 1579 0.329596 ATCTGGGTTGGAGTTGGAGC 59.670 55.000 0.00 0.00 0.00 4.70
1547 1607 3.322466 CCTCTTGGCCGACCCACT 61.322 66.667 0.00 0.00 45.34 4.00
1786 1867 3.622630 ACACTATCCTTAGACACTCGCT 58.377 45.455 0.00 0.00 0.00 4.93
1804 1885 2.811317 GCGAGCTCAGGTTGTCCG 60.811 66.667 15.40 0.00 39.05 4.79
1806 1887 1.006102 CGAGCTCAGGTTGTCCGTT 60.006 57.895 15.40 0.00 39.05 4.44
1819 1900 1.072489 TGTCCGTTTTGGCACCTATGA 59.928 47.619 0.00 0.00 37.80 2.15
1899 1980 1.244019 GCCTTGCGATGGTGAGGTTT 61.244 55.000 0.00 0.00 0.00 3.27
1905 1989 1.608025 GCGATGGTGAGGTTTGAGACA 60.608 52.381 0.00 0.00 0.00 3.41
2061 2460 2.642154 TTAGTTTTCCAGGCACCGAA 57.358 45.000 0.00 0.00 0.00 4.30
2083 2482 2.357009 CTCAGCCTTGCGCAAGAAATAT 59.643 45.455 43.49 24.20 40.79 1.28
2084 2483 2.754552 TCAGCCTTGCGCAAGAAATATT 59.245 40.909 43.49 22.21 40.79 1.28
2414 2883 3.703556 TGATGAGCCTAAGAACTGGAGAG 59.296 47.826 0.00 0.00 0.00 3.20
2464 2933 7.206981 TGAAGAAGTGGAAATCAATGTCTTC 57.793 36.000 0.00 0.00 37.67 2.87
2465 2934 6.772233 TGAAGAAGTGGAAATCAATGTCTTCA 59.228 34.615 8.32 8.32 40.57 3.02
2548 3017 4.935885 AAGAATAGCTGTGAAGCTTTCG 57.064 40.909 5.43 0.00 43.52 3.46
2574 3046 4.271533 TGATGTCACAACAAGTAACGGTTC 59.728 41.667 0.00 0.00 39.30 3.62
2650 3122 5.221843 TGTTGTTCCTAGTTCTGGTAAGCAT 60.222 40.000 0.00 0.00 0.00 3.79
2658 3130 8.861086 TCCTAGTTCTGGTAAGCATATTCTAAG 58.139 37.037 0.00 0.00 0.00 2.18
2860 3332 4.458295 GGTTGTCTTAGCTTTAGGTTTCCC 59.542 45.833 0.00 0.00 0.00 3.97
2908 3380 2.661718 AGGTTTCGGGAATGTGTTTGT 58.338 42.857 0.00 0.00 0.00 2.83
2947 3419 6.901081 ATTTTCTTTAGGTTCTGTTCCCAG 57.099 37.500 0.00 0.00 40.25 4.45
2976 3510 8.234546 TGCTAAACTCTCATTTTCCGTAAATTC 58.765 33.333 0.00 0.00 34.19 2.17
3007 3541 1.695242 TCTACATGGGTGTTCGGTGTT 59.305 47.619 0.00 0.00 39.77 3.32
3013 3547 1.485480 TGGGTGTTCGGTGTTCAGTTA 59.515 47.619 0.00 0.00 0.00 2.24
3040 3574 8.062448 GCAGATGTTATATTGGTTTTCGAGTAC 58.938 37.037 0.00 0.00 0.00 2.73
3062 3596 0.248866 GAAGTTTGGTTGTGCCCGTG 60.249 55.000 0.00 0.00 36.04 4.94
3132 3666 5.887598 TGCTGAATTAGTGTGCATAAATCCT 59.112 36.000 0.00 0.00 0.00 3.24
3135 3669 7.558161 TGAATTAGTGTGCATAAATCCTCAG 57.442 36.000 0.00 0.00 0.00 3.35
3184 3718 5.236334 TGAATGGTGGAATAGGGGGTAATA 58.764 41.667 0.00 0.00 0.00 0.98
3222 3756 1.912731 AGTTTGTGGCCCTTTTTGGTT 59.087 42.857 0.00 0.00 0.00 3.67
3251 3785 4.193826 TCTTCTCTATTCGCTGCACTTT 57.806 40.909 0.00 0.00 0.00 2.66
3261 3795 8.243426 TCTATTCGCTGCACTTTCAAAATATTT 58.757 29.630 0.00 0.00 0.00 1.40
3263 3797 5.527951 TCGCTGCACTTTCAAAATATTTGT 58.472 33.333 0.39 0.00 0.00 2.83
3265 3799 6.801377 TCGCTGCACTTTCAAAATATTTGTAG 59.199 34.615 0.39 0.00 0.00 2.74
3274 3808 6.662414 TCAAAATATTTGTAGACTCCTGCG 57.338 37.500 0.39 0.00 0.00 5.18
3276 3810 5.353394 AAATATTTGTAGACTCCTGCGGA 57.647 39.130 0.00 0.00 0.00 5.54
3279 3822 0.824109 TTGTAGACTCCTGCGGATGG 59.176 55.000 0.00 0.00 0.00 3.51
3291 3834 1.948721 GCGGATGGCAAGAAAAGGGG 61.949 60.000 0.00 0.00 42.87 4.79
3305 3848 4.354087 AGAAAAGGGGGTTCTAGTGATGTT 59.646 41.667 0.00 0.00 33.53 2.71
3314 3857 5.525378 GGGTTCTAGTGATGTTATGAGCAAG 59.475 44.000 0.00 0.00 0.00 4.01
3327 3870 6.540551 TGTTATGAGCAAGTGTTCTGTTGTTA 59.459 34.615 0.00 0.00 0.00 2.41
3333 3876 5.590259 AGCAAGTGTTCTGTTGTTATTCTGT 59.410 36.000 0.00 0.00 0.00 3.41
3341 3884 4.635765 TCTGTTGTTATTCTGTATGCTGCC 59.364 41.667 0.00 0.00 0.00 4.85
3374 3917 8.353423 AGATGGTTTTGTTTGCTATATTGAGT 57.647 30.769 0.00 0.00 0.00 3.41
3379 3922 8.807581 GGTTTTGTTTGCTATATTGAGTATTGC 58.192 33.333 0.00 0.00 40.51 3.56
3496 4039 0.811281 TGCGTCGACATGACTCTCAT 59.189 50.000 17.16 0.00 45.87 2.90
3513 4056 7.119699 TGACTCTCATCGTCAAATTTGCTTATT 59.880 33.333 13.54 0.00 38.36 1.40
3514 4057 7.467623 ACTCTCATCGTCAAATTTGCTTATTC 58.532 34.615 13.54 0.00 0.00 1.75
3515 4058 7.119699 ACTCTCATCGTCAAATTTGCTTATTCA 59.880 33.333 13.54 0.00 0.00 2.57
3520 4063 6.607689 TCGTCAAATTTGCTTATTCAACGAT 58.392 32.000 18.00 0.00 33.36 3.73
3534 4077 8.568676 TTATTCAACGATTGGTTTCAGGATTA 57.431 30.769 0.00 0.00 36.49 1.75
3545 4088 2.057137 TCAGGATTATGCTTGGTGGC 57.943 50.000 0.00 0.00 0.00 5.01
3576 4119 6.314784 CCATAAGCTAGTGTTGTTTTGCTAC 58.685 40.000 0.00 0.00 0.00 3.58
3580 4123 5.607477 AGCTAGTGTTGTTTTGCTACTGTA 58.393 37.500 0.00 0.00 0.00 2.74
3583 4126 7.876068 AGCTAGTGTTGTTTTGCTACTGTAATA 59.124 33.333 0.00 0.00 0.00 0.98
3584 4127 8.169268 GCTAGTGTTGTTTTGCTACTGTAATAG 58.831 37.037 0.00 0.00 0.00 1.73
3585 4128 7.435068 AGTGTTGTTTTGCTACTGTAATAGG 57.565 36.000 0.00 0.00 0.00 2.57
3586 4129 6.430000 AGTGTTGTTTTGCTACTGTAATAGGG 59.570 38.462 0.00 0.00 0.00 3.53
3587 4130 5.708230 TGTTGTTTTGCTACTGTAATAGGGG 59.292 40.000 0.00 0.00 0.00 4.79
3588 4131 4.266714 TGTTTTGCTACTGTAATAGGGGC 58.733 43.478 0.00 0.00 0.00 5.80
3589 4132 4.263550 TGTTTTGCTACTGTAATAGGGGCA 60.264 41.667 0.00 0.00 36.64 5.36
3590 4133 4.788925 TTTGCTACTGTAATAGGGGCAT 57.211 40.909 0.00 0.00 37.65 4.40
3617 4160 3.572255 TGCTGGTTGAAAGTGGGTTAATC 59.428 43.478 0.00 0.00 0.00 1.75
3659 4202 8.777089 TGGCCTATTTATATATGGCATTAGTGA 58.223 33.333 4.78 0.00 44.85 3.41
3660 4203 9.277783 GGCCTATTTATATATGGCATTAGTGAG 57.722 37.037 4.78 0.00 44.85 3.51
3667 4210 5.999205 ATATGGCATTAGTGAGAGAGAGG 57.001 43.478 4.78 0.00 0.00 3.69
3668 4211 3.388552 TGGCATTAGTGAGAGAGAGGA 57.611 47.619 0.00 0.00 0.00 3.71
3669 4212 3.713003 TGGCATTAGTGAGAGAGAGGAA 58.287 45.455 0.00 0.00 0.00 3.36
3670 4213 4.293494 TGGCATTAGTGAGAGAGAGGAAT 58.707 43.478 0.00 0.00 0.00 3.01
3671 4214 4.100653 TGGCATTAGTGAGAGAGAGGAATG 59.899 45.833 0.00 0.00 0.00 2.67
3672 4215 4.100808 GGCATTAGTGAGAGAGAGGAATGT 59.899 45.833 0.00 0.00 0.00 2.71
3673 4216 5.396213 GGCATTAGTGAGAGAGAGGAATGTT 60.396 44.000 0.00 0.00 0.00 2.71
3674 4217 6.112058 GCATTAGTGAGAGAGAGGAATGTTT 58.888 40.000 0.00 0.00 0.00 2.83
3675 4218 6.597280 GCATTAGTGAGAGAGAGGAATGTTTT 59.403 38.462 0.00 0.00 0.00 2.43
3676 4219 7.120432 GCATTAGTGAGAGAGAGGAATGTTTTT 59.880 37.037 0.00 0.00 0.00 1.94
3677 4220 9.658799 CATTAGTGAGAGAGAGGAATGTTTTTA 57.341 33.333 0.00 0.00 0.00 1.52
3681 4224 9.007901 AGTGAGAGAGAGGAATGTTTTTATTTG 57.992 33.333 0.00 0.00 0.00 2.32
3682 4225 7.752686 GTGAGAGAGAGGAATGTTTTTATTTGC 59.247 37.037 0.00 0.00 0.00 3.68
3683 4226 6.846350 AGAGAGAGGAATGTTTTTATTTGCG 58.154 36.000 0.00 0.00 0.00 4.85
3684 4227 6.655003 AGAGAGAGGAATGTTTTTATTTGCGA 59.345 34.615 0.00 0.00 0.00 5.10
3685 4228 6.846350 AGAGAGGAATGTTTTTATTTGCGAG 58.154 36.000 0.00 0.00 0.00 5.03
3686 4229 6.431234 AGAGAGGAATGTTTTTATTTGCGAGT 59.569 34.615 0.00 0.00 0.00 4.18
3687 4230 7.606456 AGAGAGGAATGTTTTTATTTGCGAGTA 59.394 33.333 0.00 0.00 0.00 2.59
3688 4231 7.752695 AGAGGAATGTTTTTATTTGCGAGTAG 58.247 34.615 0.00 0.00 0.00 2.57
3689 4232 7.606456 AGAGGAATGTTTTTATTTGCGAGTAGA 59.394 33.333 0.00 0.00 0.00 2.59
3690 4233 7.752695 AGGAATGTTTTTATTTGCGAGTAGAG 58.247 34.615 0.00 0.00 0.00 2.43
3691 4234 7.606456 AGGAATGTTTTTATTTGCGAGTAGAGA 59.394 33.333 0.00 0.00 0.00 3.10
3761 4402 4.819630 AGTGTTTCTGCTCCGAATGTTTTA 59.180 37.500 0.00 0.00 0.00 1.52
3793 4434 1.454201 TAGCTCACTCACGGTCTCAG 58.546 55.000 0.00 0.00 0.00 3.35
3795 4436 1.244697 GCTCACTCACGGTCTCAGGA 61.245 60.000 0.00 0.00 0.00 3.86
3840 4481 0.889994 GCACTGCCATCCATGTGAAA 59.110 50.000 0.00 0.00 32.72 2.69
3841 4482 1.403249 GCACTGCCATCCATGTGAAAC 60.403 52.381 0.00 0.00 32.72 2.78
3844 4485 1.399440 CTGCCATCCATGTGAAACGAG 59.601 52.381 0.00 0.00 42.39 4.18
3854 4495 2.488952 TGTGAAACGAGCAGTGCATAA 58.511 42.857 19.20 0.00 42.39 1.90
3862 4503 2.346847 CGAGCAGTGCATAACTTCTCAC 59.653 50.000 19.20 0.00 46.15 3.51
3873 4514 2.887151 ACTTCTCACTGAAATGGGGG 57.113 50.000 0.00 0.00 33.79 5.40
3896 4537 5.491982 GGAAAAGAGAGATGAAGTGCCTAA 58.508 41.667 0.00 0.00 0.00 2.69
3900 4541 2.769095 GAGAGATGAAGTGCCTAAGGGT 59.231 50.000 0.00 0.00 34.45 4.34
3908 4549 2.399580 AGTGCCTAAGGGTATCAGGTC 58.600 52.381 0.00 0.00 34.45 3.85
3915 4556 5.743422 GCCTAAGGGTATCAGGTCTCATTTC 60.743 48.000 0.00 0.00 34.45 2.17
3931 4572 5.683876 TCATTTCTTGAGACTTAGGGAGG 57.316 43.478 0.00 0.00 0.00 4.30
3932 4573 4.471386 TCATTTCTTGAGACTTAGGGAGGG 59.529 45.833 0.00 0.00 0.00 4.30
3933 4574 1.867363 TCTTGAGACTTAGGGAGGGC 58.133 55.000 0.00 0.00 0.00 5.19
3934 4575 1.078823 TCTTGAGACTTAGGGAGGGCA 59.921 52.381 0.00 0.00 0.00 5.36
3935 4576 1.909302 CTTGAGACTTAGGGAGGGCAA 59.091 52.381 0.00 0.00 0.00 4.52
3936 4577 1.276622 TGAGACTTAGGGAGGGCAAC 58.723 55.000 0.00 0.00 0.00 4.17
3957 4598 7.203218 GCAACAAGGTAAGGGAAATTATGATC 58.797 38.462 0.00 0.00 0.00 2.92
3979 4620 3.490933 CGTGCCACTAGCTAGCATAGAAA 60.491 47.826 20.91 0.00 42.77 2.52
3981 4622 4.450419 GTGCCACTAGCTAGCATAGAAATG 59.550 45.833 20.91 8.54 42.77 2.32
3983 4624 4.450419 GCCACTAGCTAGCATAGAAATGTG 59.550 45.833 20.91 12.14 42.77 3.21
3990 4631 5.012458 AGCTAGCATAGAAATGTGATGGCTA 59.988 40.000 18.83 0.00 42.77 3.93
3994 4635 4.320057 GCATAGAAATGTGATGGCTAGCAC 60.320 45.833 18.24 11.97 43.34 4.40
3998 4639 1.755179 ATGTGATGGCTAGCACCAAC 58.245 50.000 16.21 9.75 44.65 3.77
4002 4643 2.558359 GTGATGGCTAGCACCAACTTTT 59.442 45.455 18.24 0.00 44.65 2.27
4017 4658 4.035441 CCAACTTTTTGCAAATTGTGGAGG 59.965 41.667 13.65 12.82 0.00 4.30
4032 4676 2.040412 GTGGAGGACTGAAACCTTGGAT 59.960 50.000 0.00 0.00 37.93 3.41
4033 4677 2.305927 TGGAGGACTGAAACCTTGGATC 59.694 50.000 0.00 0.00 37.93 3.36
4034 4678 2.622436 GAGGACTGAAACCTTGGATCG 58.378 52.381 0.00 0.00 37.93 3.69
4035 4679 2.233922 GAGGACTGAAACCTTGGATCGA 59.766 50.000 0.00 0.00 37.93 3.59
4036 4680 2.637872 AGGACTGAAACCTTGGATCGAA 59.362 45.455 0.00 0.00 33.55 3.71
4037 4681 2.742589 GGACTGAAACCTTGGATCGAAC 59.257 50.000 0.00 0.00 0.00 3.95
4038 4682 3.557264 GGACTGAAACCTTGGATCGAACT 60.557 47.826 0.00 0.00 0.00 3.01
4039 4683 4.065789 GACTGAAACCTTGGATCGAACTT 58.934 43.478 0.00 0.00 0.00 2.66
4040 4684 4.065789 ACTGAAACCTTGGATCGAACTTC 58.934 43.478 0.00 0.00 0.00 3.01
4041 4685 3.064207 TGAAACCTTGGATCGAACTTCG 58.936 45.455 4.72 4.72 42.10 3.79
4042 4686 1.439679 AACCTTGGATCGAACTTCGC 58.560 50.000 6.29 0.00 40.21 4.70
4043 4687 0.608640 ACCTTGGATCGAACTTCGCT 59.391 50.000 6.29 0.00 40.21 4.93
4044 4688 1.002366 CCTTGGATCGAACTTCGCTG 58.998 55.000 6.29 0.00 40.21 5.18
4045 4689 1.404181 CCTTGGATCGAACTTCGCTGA 60.404 52.381 6.29 0.00 40.21 4.26
4046 4690 2.544685 CTTGGATCGAACTTCGCTGAT 58.455 47.619 6.29 0.00 40.21 2.90
4047 4691 2.209838 TGGATCGAACTTCGCTGATC 57.790 50.000 6.29 4.82 40.21 2.92
4048 4692 1.476488 TGGATCGAACTTCGCTGATCA 59.524 47.619 6.29 0.00 40.21 2.92
4049 4693 1.855360 GGATCGAACTTCGCTGATCAC 59.145 52.381 6.29 0.00 40.21 3.06
4050 4694 2.530177 GATCGAACTTCGCTGATCACA 58.470 47.619 6.29 0.00 40.21 3.58
4051 4695 2.654749 TCGAACTTCGCTGATCACAT 57.345 45.000 6.29 0.00 40.21 3.21
4052 4696 2.959516 TCGAACTTCGCTGATCACATT 58.040 42.857 6.29 0.00 40.21 2.71
4053 4697 3.325870 TCGAACTTCGCTGATCACATTT 58.674 40.909 6.29 0.00 40.21 2.32
4054 4698 3.367932 TCGAACTTCGCTGATCACATTTC 59.632 43.478 6.29 0.00 40.21 2.17
4055 4699 3.369147 CGAACTTCGCTGATCACATTTCT 59.631 43.478 0.00 0.00 31.14 2.52
4085 5180 1.211818 GCATGACATCGCTCGAGTCC 61.212 60.000 15.13 0.00 0.00 3.85
4086 5181 0.101219 CATGACATCGCTCGAGTCCA 59.899 55.000 15.13 3.92 0.00 4.02
4094 5189 0.179145 CGCTCGAGTCCAACGGTATT 60.179 55.000 15.13 0.00 0.00 1.89
4096 5191 1.135199 GCTCGAGTCCAACGGTATTGA 60.135 52.381 15.13 0.00 0.00 2.57
4111 5206 2.420058 ATTGACCCGTTCATCCCTTC 57.580 50.000 0.00 0.00 32.84 3.46
4116 5211 2.165301 CCGTTCATCCCTTCGCGTC 61.165 63.158 5.77 0.00 0.00 5.19
4119 5214 3.365291 TTCATCCCTTCGCGTCCGG 62.365 63.158 5.77 0.00 34.56 5.14
4124 5219 2.027169 CCTTCGCGTCCGGATACC 59.973 66.667 7.81 0.00 34.56 2.73
4131 5226 2.416260 GTCCGGATACCGCCTCAC 59.584 66.667 7.81 0.00 46.86 3.51
4147 5242 2.502947 CCTCACTCATCTTCACCATCCA 59.497 50.000 0.00 0.00 0.00 3.41
4148 5243 3.431905 CCTCACTCATCTTCACCATCCAG 60.432 52.174 0.00 0.00 0.00 3.86
4150 5245 4.352893 TCACTCATCTTCACCATCCAGTA 58.647 43.478 0.00 0.00 0.00 2.74
4154 5249 3.713248 TCATCTTCACCATCCAGTAGCAT 59.287 43.478 0.00 0.00 0.00 3.79
4155 5250 3.827008 TCTTCACCATCCAGTAGCATC 57.173 47.619 0.00 0.00 0.00 3.91
4157 5252 1.485124 TCACCATCCAGTAGCATCGT 58.515 50.000 0.00 0.00 0.00 3.73
4189 5284 3.618780 CTTTGCCCGCTGCTCCTCT 62.619 63.158 0.00 0.00 42.00 3.69
4233 5328 0.986550 TGCCCTAAGCTTACCCCTCC 60.987 60.000 0.86 0.00 44.23 4.30
4236 5331 1.335132 CCTAAGCTTACCCCTCCGCA 61.335 60.000 0.86 0.00 0.00 5.69
4238 5333 1.952102 TAAGCTTACCCCTCCGCACG 61.952 60.000 0.86 0.00 0.00 5.34
4264 5404 4.870426 TCAGAGAACATCGGCATTTTCTAC 59.130 41.667 0.00 0.00 30.49 2.59
4275 5415 4.576463 CGGCATTTTCTACTGCTTCCTTAT 59.424 41.667 0.00 0.00 38.45 1.73
4276 5416 5.758296 CGGCATTTTCTACTGCTTCCTTATA 59.242 40.000 0.00 0.00 38.45 0.98
4277 5417 6.073548 CGGCATTTTCTACTGCTTCCTTATAG 60.074 42.308 0.00 0.00 38.45 1.31
4314 5454 0.107361 GATGGTAGGGTCGGGGTTTG 60.107 60.000 0.00 0.00 0.00 2.93
4319 5459 2.420547 GGTAGGGTCGGGGTTTGAATAC 60.421 54.545 0.00 0.00 0.00 1.89
4337 5477 2.915738 ACCGATCGACTGTAGACAAC 57.084 50.000 18.66 0.00 0.00 3.32
4342 5482 3.846896 CGATCGACTGTAGACAACACTTC 59.153 47.826 10.26 0.00 33.45 3.01
4344 5484 2.031420 TCGACTGTAGACAACACTTCGG 60.031 50.000 0.00 0.00 38.34 4.30
4381 5607 5.621197 TGTAAAGAATGACGAACCATTGG 57.379 39.130 0.00 0.00 36.93 3.16
4394 5620 1.273154 ACCATTGGCCATGATGTTGGA 60.273 47.619 6.09 0.00 39.25 3.53
4442 6069 6.464519 CGTGTTGATGTCGGTTTATATTGTTG 59.535 38.462 0.00 0.00 0.00 3.33
4444 6071 7.480542 GTGTTGATGTCGGTTTATATTGTTGAC 59.519 37.037 0.00 0.00 0.00 3.18
4445 6072 7.173390 TGTTGATGTCGGTTTATATTGTTGACA 59.827 33.333 0.00 0.00 38.98 3.58
4447 6074 7.747888 TGATGTCGGTTTATATTGTTGACAAG 58.252 34.615 2.77 0.00 39.47 3.16
4479 6107 6.127814 ACCTAATGATTTCAGCACATCAACTG 60.128 38.462 0.00 0.00 33.13 3.16
4480 6108 4.713824 ATGATTTCAGCACATCAACTGG 57.286 40.909 0.00 0.00 33.13 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 3.047877 GGTCTTTGGTGTCGCCGG 61.048 66.667 0.00 0.00 41.21 6.13
32 33 1.098712 TGGTGTTTGCTTCCGGTGAC 61.099 55.000 0.00 0.00 0.00 3.67
37 38 0.039256 CATGGTGGTGTTTGCTTCCG 60.039 55.000 0.00 0.00 0.00 4.30
97 98 3.070446 TGAGTTATGTGTGGTTCGAAGGT 59.930 43.478 0.00 0.00 0.00 3.50
143 144 4.015406 TCGCGGCTGGTGGTTGAT 62.015 61.111 6.13 0.00 0.00 2.57
202 203 2.443016 CCACCTCCTCCTCCTCCG 60.443 72.222 0.00 0.00 0.00 4.63
205 210 2.641746 CCTCCCACCTCCTCCTCCT 61.642 68.421 0.00 0.00 0.00 3.69
216 221 3.325753 AGGCTCAGCACCTCCCAC 61.326 66.667 0.00 0.00 28.76 4.61
250 255 4.867599 CGCTTCGTCGGGGCCTAC 62.868 72.222 0.84 0.94 0.00 3.18
267 272 2.913060 CGGGAGGGGAGGTCGATC 60.913 72.222 0.00 0.00 0.00 3.69
269 274 4.437587 GTCGGGAGGGGAGGTCGA 62.438 72.222 0.00 0.00 0.00 4.20
272 277 4.444081 CTCGTCGGGAGGGGAGGT 62.444 72.222 0.00 0.00 39.22 3.85
342 347 3.932580 TACTCAGTGCAAGCGGCCG 62.933 63.158 24.05 24.05 43.89 6.13
359 364 1.599518 CTGTTGGGGCACGTTGCTA 60.600 57.895 9.31 0.00 44.28 3.49
402 407 1.067295 TCTTGAGGGACTGCACCAAT 58.933 50.000 0.00 0.00 41.55 3.16
439 444 0.666274 CGTGACAAGTGCTTCCGCTA 60.666 55.000 0.00 0.00 36.97 4.26
469 474 2.358737 CCCACGCAAGGAGGTGTC 60.359 66.667 0.00 0.00 46.39 3.67
548 553 2.894387 GATCTCGCAGTGGCAGGC 60.894 66.667 1.14 1.14 41.24 4.85
632 669 2.081425 ATCTCGTCGGCATCTGAGGC 62.081 60.000 5.61 5.61 0.00 4.70
646 683 1.134670 GTCTCTGGTTTGGGGATCTCG 60.135 57.143 0.00 0.00 0.00 4.04
651 688 0.761323 TGTCGTCTCTGGTTTGGGGA 60.761 55.000 0.00 0.00 0.00 4.81
652 689 0.320771 CTGTCGTCTCTGGTTTGGGG 60.321 60.000 0.00 0.00 0.00 4.96
663 700 3.063084 GGGAGCGTCCTGTCGTCT 61.063 66.667 4.41 0.00 36.57 4.18
666 703 3.461773 ATGGGGAGCGTCCTGTCG 61.462 66.667 4.41 0.00 36.57 4.35
670 707 2.285368 TTCCATGGGGAGCGTCCT 60.285 61.111 13.02 0.00 46.01 3.85
671 708 2.190578 CTTCCATGGGGAGCGTCC 59.809 66.667 13.02 0.00 46.01 4.79
682 719 1.605058 CGGTGACCTCGTCCTTCCAT 61.605 60.000 0.00 0.00 0.00 3.41
683 720 2.273179 CGGTGACCTCGTCCTTCCA 61.273 63.158 0.00 0.00 0.00 3.53
685 722 1.507174 CTCGGTGACCTCGTCCTTC 59.493 63.158 0.00 0.00 0.00 3.46
725 762 4.794648 TTCTCCATTGCCGGCGGG 62.795 66.667 29.48 22.69 0.00 6.13
736 773 2.038975 CCCTCTCCCCGTTCTCCA 59.961 66.667 0.00 0.00 0.00 3.86
738 775 1.758906 CCTCCCTCTCCCCGTTCTC 60.759 68.421 0.00 0.00 0.00 2.87
739 776 2.231540 CTCCTCCCTCTCCCCGTTCT 62.232 65.000 0.00 0.00 0.00 3.01
740 777 1.758906 CTCCTCCCTCTCCCCGTTC 60.759 68.421 0.00 0.00 0.00 3.95
744 781 2.015726 TCCTCTCCTCCCTCTCCCC 61.016 68.421 0.00 0.00 0.00 4.81
749 786 2.015726 TCCCCTCCTCTCCTCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
763 800 3.450115 CTCTCACCGGTCGTCCCC 61.450 72.222 2.59 0.00 0.00 4.81
769 806 2.567049 CCGTGTCTCTCACCGGTC 59.433 66.667 2.59 0.00 43.51 4.79
773 810 4.436998 CGGGCCGTGTCTCTCACC 62.437 72.222 19.97 0.00 43.51 4.02
775 812 4.671590 TCCGGGCCGTGTCTCTCA 62.672 66.667 26.32 0.00 0.00 3.27
868 906 3.535962 GAGAGCGAGAGGCCCCTG 61.536 72.222 0.00 0.00 45.17 4.45
875 913 0.530650 AGAGAGCGAGAGAGCGAGAG 60.531 60.000 0.00 0.00 43.00 3.20
876 914 0.529773 GAGAGAGCGAGAGAGCGAGA 60.530 60.000 0.00 0.00 43.00 4.04
879 917 1.701545 AACGAGAGAGCGAGAGAGCG 61.702 60.000 0.00 0.00 43.00 5.03
899 937 4.308458 TTCACTGTCGGTGGGCGG 62.308 66.667 11.94 0.00 45.38 6.13
900 938 2.709125 TTCTTCACTGTCGGTGGGCG 62.709 60.000 11.94 1.44 45.38 6.13
901 939 0.534203 TTTCTTCACTGTCGGTGGGC 60.534 55.000 11.94 0.00 45.38 5.36
902 940 1.070134 TCTTTCTTCACTGTCGGTGGG 59.930 52.381 11.94 5.79 45.38 4.61
903 941 2.408050 CTCTTTCTTCACTGTCGGTGG 58.592 52.381 11.94 0.00 45.38 4.61
904 942 1.795286 GCTCTTTCTTCACTGTCGGTG 59.205 52.381 5.35 5.35 46.60 4.94
905 943 1.689273 AGCTCTTTCTTCACTGTCGGT 59.311 47.619 0.00 0.00 0.00 4.69
906 944 2.447244 AGCTCTTTCTTCACTGTCGG 57.553 50.000 0.00 0.00 0.00 4.79
907 945 4.201666 GCATTAGCTCTTTCTTCACTGTCG 60.202 45.833 0.00 0.00 37.91 4.35
908 946 4.201666 CGCATTAGCTCTTTCTTCACTGTC 60.202 45.833 0.00 0.00 39.10 3.51
909 947 3.681897 CGCATTAGCTCTTTCTTCACTGT 59.318 43.478 0.00 0.00 39.10 3.55
910 948 3.681897 ACGCATTAGCTCTTTCTTCACTG 59.318 43.478 0.00 0.00 39.10 3.66
911 949 3.929610 GACGCATTAGCTCTTTCTTCACT 59.070 43.478 0.00 0.00 39.10 3.41
912 950 3.062774 GGACGCATTAGCTCTTTCTTCAC 59.937 47.826 0.00 0.00 39.10 3.18
913 951 3.262420 GGACGCATTAGCTCTTTCTTCA 58.738 45.455 0.00 0.00 39.10 3.02
914 952 3.262420 TGGACGCATTAGCTCTTTCTTC 58.738 45.455 0.00 0.00 39.10 2.87
915 953 3.265791 CTGGACGCATTAGCTCTTTCTT 58.734 45.455 0.00 0.00 39.10 2.52
916 954 2.898705 CTGGACGCATTAGCTCTTTCT 58.101 47.619 0.00 0.00 39.10 2.52
917 955 1.328986 GCTGGACGCATTAGCTCTTTC 59.671 52.381 0.00 0.00 39.10 2.62
918 956 1.373570 GCTGGACGCATTAGCTCTTT 58.626 50.000 0.00 0.00 39.10 2.52
919 957 0.462759 GGCTGGACGCATTAGCTCTT 60.463 55.000 0.00 0.00 41.67 2.85
920 958 1.144936 GGCTGGACGCATTAGCTCT 59.855 57.895 0.00 0.00 41.67 4.09
921 959 1.889573 GGGCTGGACGCATTAGCTC 60.890 63.158 0.00 0.00 41.67 4.09
922 960 2.190578 GGGCTGGACGCATTAGCT 59.809 61.111 0.00 0.00 41.67 3.32
923 961 1.312371 TTTGGGCTGGACGCATTAGC 61.312 55.000 0.00 0.00 41.46 3.09
924 962 1.173043 TTTTGGGCTGGACGCATTAG 58.827 50.000 0.00 0.00 41.46 1.73
925 963 1.621992 TTTTTGGGCTGGACGCATTA 58.378 45.000 0.00 0.00 41.46 1.90
926 964 2.435418 TTTTTGGGCTGGACGCATT 58.565 47.368 0.00 0.00 41.46 3.56
927 965 4.189539 TTTTTGGGCTGGACGCAT 57.810 50.000 0.00 0.00 41.46 4.73
945 983 1.530323 AATCGCCGCACTAGGTTTTT 58.470 45.000 0.00 0.00 0.00 1.94
946 984 1.199097 CAAATCGCCGCACTAGGTTTT 59.801 47.619 0.00 0.00 0.00 2.43
947 985 0.802494 CAAATCGCCGCACTAGGTTT 59.198 50.000 0.00 0.00 0.00 3.27
948 986 1.024579 CCAAATCGCCGCACTAGGTT 61.025 55.000 0.00 0.00 0.00 3.50
949 987 1.449601 CCAAATCGCCGCACTAGGT 60.450 57.895 0.00 0.00 0.00 3.08
950 988 2.180204 CCCAAATCGCCGCACTAGG 61.180 63.158 0.00 0.00 0.00 3.02
951 989 1.153449 TCCCAAATCGCCGCACTAG 60.153 57.895 0.00 0.00 0.00 2.57
952 990 1.153449 CTCCCAAATCGCCGCACTA 60.153 57.895 0.00 0.00 0.00 2.74
953 991 2.436646 CTCCCAAATCGCCGCACT 60.437 61.111 0.00 0.00 0.00 4.40
954 992 1.982073 CTTCTCCCAAATCGCCGCAC 61.982 60.000 0.00 0.00 0.00 5.34
1047 1088 0.105760 TGAGATCAGCTCCTCCTCCC 60.106 60.000 0.00 0.00 43.26 4.30
1059 1100 1.744639 GAGGGCGCTGATGAGATCA 59.255 57.895 8.56 0.00 37.76 2.92
1208 1250 1.219124 GATTGGAGCGAGTGGAGCA 59.781 57.895 0.00 0.00 37.01 4.26
1312 1372 3.852572 GCGTACTGCAGGTAGTATAGCAC 60.853 52.174 19.93 0.00 42.67 4.40
1397 1457 0.832135 AAGTGGGCCAAGAGAGACGA 60.832 55.000 8.40 0.00 0.00 4.20
1423 1483 5.643777 AGCACAATAATAAGTCAGGTGTCAC 59.356 40.000 0.00 0.00 0.00 3.67
1519 1579 1.621672 GCCAAGAGGGAGAGGTCCAG 61.622 65.000 0.00 0.00 46.07 3.86
1555 1615 1.883084 GAGCGGGGAACATGTAGCG 60.883 63.158 0.00 0.00 0.00 4.26
1609 1669 1.078143 GGAGGAGCAAGTCGGCAAT 60.078 57.895 0.00 0.00 35.83 3.56
1786 1867 2.343758 GGACAACCTGAGCTCGCA 59.656 61.111 9.64 0.00 0.00 5.10
1804 1885 3.620488 TCTCCATCATAGGTGCCAAAAC 58.380 45.455 0.00 0.00 0.00 2.43
1806 1887 3.371917 CCTTCTCCATCATAGGTGCCAAA 60.372 47.826 0.00 0.00 0.00 3.28
1819 1900 1.366319 AGCCACAGAACCTTCTCCAT 58.634 50.000 0.00 0.00 34.74 3.41
1853 1934 1.152881 CCAATCCCAGCAGCTACCC 60.153 63.158 0.00 0.00 0.00 3.69
1899 1980 0.251354 GGGCATTGCTCTCTGTCTCA 59.749 55.000 8.82 0.00 0.00 3.27
1905 1989 1.378250 GCACAGGGCATTGCTCTCT 60.378 57.895 8.42 0.00 37.20 3.10
2061 2460 0.819259 TTTCTTGCGCAAGGCTGAGT 60.819 50.000 41.00 0.00 44.05 3.41
2083 2482 8.514330 AAGTTACAAACCACTAGATGTTTCAA 57.486 30.769 0.00 0.11 32.60 2.69
2084 2483 7.990886 AGAAGTTACAAACCACTAGATGTTTCA 59.009 33.333 0.00 0.00 32.60 2.69
2256 2707 8.698210 TGCCTTTTTGCTTCATATATTTCAGAT 58.302 29.630 0.00 0.00 0.00 2.90
2257 2708 8.065473 TGCCTTTTTGCTTCATATATTTCAGA 57.935 30.769 0.00 0.00 0.00 3.27
2381 2850 2.481441 AGGCTCATCACAGGGACAATA 58.519 47.619 0.00 0.00 0.00 1.90
2464 2933 4.219070 TCAAATTCATGCTCCTGTCCTTTG 59.781 41.667 0.00 0.00 0.00 2.77
2465 2934 4.410099 TCAAATTCATGCTCCTGTCCTTT 58.590 39.130 0.00 0.00 0.00 3.11
2548 3017 4.142902 CCGTTACTTGTTGTGACATCATCC 60.143 45.833 0.00 0.00 35.21 3.51
2574 3046 6.215477 AGATGTCATATATTTTCGTGCACG 57.785 37.500 32.76 32.76 41.45 5.34
2650 3122 9.841880 GAGCGTGATAATCATGTACTTAGAATA 57.158 33.333 0.00 0.00 35.86 1.75
2658 3130 2.987149 CGGGAGCGTGATAATCATGTAC 59.013 50.000 0.00 0.00 35.86 2.90
2787 3259 6.539826 TGAAGCCAATGACACATAACTATGAG 59.460 38.462 3.73 0.00 37.15 2.90
2834 3306 5.562298 AACCTAAAGCTAAGACAACCTGA 57.438 39.130 0.00 0.00 0.00 3.86
2860 3332 6.094603 AGAGCTTTACAACAAAGATAGCATGG 59.905 38.462 0.00 0.00 0.00 3.66
2894 3366 1.604604 AGACCACAAACACATTCCCG 58.395 50.000 0.00 0.00 0.00 5.14
2969 3503 8.131100 CCATGTAGATGGTGTGAATGAATTTAC 58.869 37.037 10.78 0.00 43.98 2.01
3007 3541 9.461312 AAAACCAATATAACATCTGCTAACTGA 57.539 29.630 0.00 0.00 0.00 3.41
3013 3547 6.823689 ACTCGAAAACCAATATAACATCTGCT 59.176 34.615 0.00 0.00 0.00 4.24
3040 3574 0.389025 GGGCACAACCAAACTTCAGG 59.611 55.000 0.00 0.00 42.05 3.86
3095 3629 8.107095 ACACTAATTCAGCAGTTTTATTCCCTA 58.893 33.333 0.00 0.00 0.00 3.53
3222 3756 5.178252 GCAGCGAATAGAGAAGATTGCATAA 59.822 40.000 0.00 0.00 0.00 1.90
3251 3785 6.662414 CGCAGGAGTCTACAAATATTTTGA 57.338 37.500 6.96 0.00 0.00 2.69
3274 3808 0.252239 ACCCCCTTTTCTTGCCATCC 60.252 55.000 0.00 0.00 0.00 3.51
3276 3810 1.149923 AGAACCCCCTTTTCTTGCCAT 59.850 47.619 0.00 0.00 28.36 4.40
3279 3822 2.820197 CACTAGAACCCCCTTTTCTTGC 59.180 50.000 0.00 0.00 34.99 4.01
3291 3834 6.036517 CACTTGCTCATAACATCACTAGAACC 59.963 42.308 0.00 0.00 0.00 3.62
3305 3848 7.661437 AGAATAACAACAGAACACTTGCTCATA 59.339 33.333 0.00 0.00 0.00 2.15
3314 3857 7.017645 CAGCATACAGAATAACAACAGAACAC 58.982 38.462 0.00 0.00 0.00 3.32
3327 3870 3.354948 TGAACTGGCAGCATACAGAAT 57.645 42.857 15.89 0.00 38.09 2.40
3333 3876 3.392285 ACCATCTATGAACTGGCAGCATA 59.608 43.478 15.89 13.70 33.12 3.14
3341 3884 6.449698 AGCAAACAAAACCATCTATGAACTG 58.550 36.000 0.00 0.00 0.00 3.16
3422 3965 7.125792 TGGAAAGGAGGTCAGTTAATATCTC 57.874 40.000 0.00 0.00 0.00 2.75
3430 3973 4.026356 CTTCATGGAAAGGAGGTCAGTT 57.974 45.455 0.00 0.00 0.00 3.16
3496 4039 5.991568 TCGTTGAATAAGCAAATTTGACGA 58.008 33.333 22.31 19.75 35.75 4.20
3513 4056 5.163663 GCATAATCCTGAAACCAATCGTTGA 60.164 40.000 0.15 0.00 33.93 3.18
3514 4057 5.036737 GCATAATCCTGAAACCAATCGTTG 58.963 41.667 0.00 0.00 33.93 4.10
3515 4058 4.949856 AGCATAATCCTGAAACCAATCGTT 59.050 37.500 0.00 0.00 35.70 3.85
3520 4063 4.220382 CACCAAGCATAATCCTGAAACCAA 59.780 41.667 0.00 0.00 0.00 3.67
3534 4077 1.187567 GGGTTGAAGCCACCAAGCAT 61.188 55.000 8.81 0.00 42.05 3.79
3545 4088 5.003804 ACAACACTAGCTTATGGGTTGAAG 58.996 41.667 25.46 8.80 39.02 3.02
3576 4119 2.775890 CAGCTCATGCCCCTATTACAG 58.224 52.381 0.00 0.00 40.80 2.74
3588 4131 1.884579 ACTTTCAACCAGCAGCTCATG 59.115 47.619 0.00 0.00 0.00 3.07
3589 4132 1.884579 CACTTTCAACCAGCAGCTCAT 59.115 47.619 0.00 0.00 0.00 2.90
3590 4133 1.311859 CACTTTCAACCAGCAGCTCA 58.688 50.000 0.00 0.00 0.00 4.26
3601 4144 6.490721 ACATTTACGGATTAACCCACTTTCAA 59.509 34.615 0.00 0.00 34.64 2.69
3604 4147 6.904463 AACATTTACGGATTAACCCACTTT 57.096 33.333 0.00 0.00 34.64 2.66
3617 4160 1.336755 GGCCATGGCTAACATTTACGG 59.663 52.381 34.70 0.00 37.84 4.02
3659 4202 6.655003 TCGCAAATAAAAACATTCCTCTCTCT 59.345 34.615 0.00 0.00 0.00 3.10
3660 4203 6.842163 TCGCAAATAAAAACATTCCTCTCTC 58.158 36.000 0.00 0.00 0.00 3.20
3661 4204 6.431234 ACTCGCAAATAAAAACATTCCTCTCT 59.569 34.615 0.00 0.00 0.00 3.10
3662 4205 6.612306 ACTCGCAAATAAAAACATTCCTCTC 58.388 36.000 0.00 0.00 0.00 3.20
3663 4206 6.575162 ACTCGCAAATAAAAACATTCCTCT 57.425 33.333 0.00 0.00 0.00 3.69
3664 4207 7.748847 TCTACTCGCAAATAAAAACATTCCTC 58.251 34.615 0.00 0.00 0.00 3.71
3665 4208 7.606456 TCTCTACTCGCAAATAAAAACATTCCT 59.394 33.333 0.00 0.00 0.00 3.36
3666 4209 7.748847 TCTCTACTCGCAAATAAAAACATTCC 58.251 34.615 0.00 0.00 0.00 3.01
3667 4210 8.656849 TCTCTCTACTCGCAAATAAAAACATTC 58.343 33.333 0.00 0.00 0.00 2.67
3668 4211 8.547967 TCTCTCTACTCGCAAATAAAAACATT 57.452 30.769 0.00 0.00 0.00 2.71
3669 4212 8.035394 TCTCTCTCTACTCGCAAATAAAAACAT 58.965 33.333 0.00 0.00 0.00 2.71
3670 4213 7.375834 TCTCTCTCTACTCGCAAATAAAAACA 58.624 34.615 0.00 0.00 0.00 2.83
3671 4214 7.755822 TCTCTCTCTCTACTCGCAAATAAAAAC 59.244 37.037 0.00 0.00 0.00 2.43
3672 4215 7.827701 TCTCTCTCTCTACTCGCAAATAAAAA 58.172 34.615 0.00 0.00 0.00 1.94
3673 4216 7.392494 TCTCTCTCTCTACTCGCAAATAAAA 57.608 36.000 0.00 0.00 0.00 1.52
3674 4217 6.038825 CCTCTCTCTCTCTACTCGCAAATAAA 59.961 42.308 0.00 0.00 0.00 1.40
3675 4218 5.529430 CCTCTCTCTCTCTACTCGCAAATAA 59.471 44.000 0.00 0.00 0.00 1.40
3676 4219 5.060506 CCTCTCTCTCTCTACTCGCAAATA 58.939 45.833 0.00 0.00 0.00 1.40
3677 4220 3.882888 CCTCTCTCTCTCTACTCGCAAAT 59.117 47.826 0.00 0.00 0.00 2.32
3678 4221 3.055021 TCCTCTCTCTCTCTACTCGCAAA 60.055 47.826 0.00 0.00 0.00 3.68
3679 4222 2.502130 TCCTCTCTCTCTCTACTCGCAA 59.498 50.000 0.00 0.00 0.00 4.85
3680 4223 2.112190 TCCTCTCTCTCTCTACTCGCA 58.888 52.381 0.00 0.00 0.00 5.10
3681 4224 2.902705 TCCTCTCTCTCTCTACTCGC 57.097 55.000 0.00 0.00 0.00 5.03
3682 4225 4.703897 ACATTCCTCTCTCTCTCTACTCG 58.296 47.826 0.00 0.00 0.00 4.18
3683 4226 5.299279 CCAACATTCCTCTCTCTCTCTACTC 59.701 48.000 0.00 0.00 0.00 2.59
3684 4227 5.044476 TCCAACATTCCTCTCTCTCTCTACT 60.044 44.000 0.00 0.00 0.00 2.57
3685 4228 5.197451 TCCAACATTCCTCTCTCTCTCTAC 58.803 45.833 0.00 0.00 0.00 2.59
3686 4229 5.458451 TCCAACATTCCTCTCTCTCTCTA 57.542 43.478 0.00 0.00 0.00 2.43
3687 4230 4.329638 TCCAACATTCCTCTCTCTCTCT 57.670 45.455 0.00 0.00 0.00 3.10
3688 4231 5.833131 ACTATCCAACATTCCTCTCTCTCTC 59.167 44.000 0.00 0.00 0.00 3.20
3689 4232 5.776358 ACTATCCAACATTCCTCTCTCTCT 58.224 41.667 0.00 0.00 0.00 3.10
3690 4233 5.596361 TGACTATCCAACATTCCTCTCTCTC 59.404 44.000 0.00 0.00 0.00 3.20
3691 4234 5.523588 TGACTATCCAACATTCCTCTCTCT 58.476 41.667 0.00 0.00 0.00 3.10
3761 4402 4.586421 TGAGTGAGCTAATTCGATCCATCT 59.414 41.667 0.00 0.00 0.00 2.90
3840 4481 2.611518 GAGAAGTTATGCACTGCTCGT 58.388 47.619 1.98 0.00 46.66 4.18
3854 4495 2.887151 CCCCCATTTCAGTGAGAAGT 57.113 50.000 0.00 0.00 37.57 3.01
3873 4514 3.949132 AGGCACTTCATCTCTCTTTTCC 58.051 45.455 0.00 0.00 27.25 3.13
3877 4518 3.454082 CCCTTAGGCACTTCATCTCTCTT 59.546 47.826 0.00 0.00 41.75 2.85
3878 4519 3.037549 CCCTTAGGCACTTCATCTCTCT 58.962 50.000 0.00 0.00 41.75 3.10
3896 4537 5.032846 TCAAGAAATGAGACCTGATACCCT 58.967 41.667 0.00 0.00 33.04 4.34
3915 4556 1.573108 TGCCCTCCCTAAGTCTCAAG 58.427 55.000 0.00 0.00 0.00 3.02
3920 4561 1.340114 CCTTGTTGCCCTCCCTAAGTC 60.340 57.143 0.00 0.00 0.00 3.01
3921 4562 0.698818 CCTTGTTGCCCTCCCTAAGT 59.301 55.000 0.00 0.00 0.00 2.24
3922 4563 0.698818 ACCTTGTTGCCCTCCCTAAG 59.301 55.000 0.00 0.00 0.00 2.18
3923 4564 2.047769 TACCTTGTTGCCCTCCCTAA 57.952 50.000 0.00 0.00 0.00 2.69
3924 4565 1.913419 CTTACCTTGTTGCCCTCCCTA 59.087 52.381 0.00 0.00 0.00 3.53
3925 4566 0.698818 CTTACCTTGTTGCCCTCCCT 59.301 55.000 0.00 0.00 0.00 4.20
3926 4567 0.323451 CCTTACCTTGTTGCCCTCCC 60.323 60.000 0.00 0.00 0.00 4.30
3927 4568 0.323451 CCCTTACCTTGTTGCCCTCC 60.323 60.000 0.00 0.00 0.00 4.30
3929 4570 1.154430 TTCCCTTACCTTGTTGCCCT 58.846 50.000 0.00 0.00 0.00 5.19
3930 4571 2.003937 TTTCCCTTACCTTGTTGCCC 57.996 50.000 0.00 0.00 0.00 5.36
3931 4572 5.420739 TCATAATTTCCCTTACCTTGTTGCC 59.579 40.000 0.00 0.00 0.00 4.52
3932 4573 6.524101 TCATAATTTCCCTTACCTTGTTGC 57.476 37.500 0.00 0.00 0.00 4.17
3933 4574 7.067008 ACGATCATAATTTCCCTTACCTTGTTG 59.933 37.037 0.00 0.00 0.00 3.33
3934 4575 7.067008 CACGATCATAATTTCCCTTACCTTGTT 59.933 37.037 0.00 0.00 0.00 2.83
3935 4576 6.542370 CACGATCATAATTTCCCTTACCTTGT 59.458 38.462 0.00 0.00 0.00 3.16
3936 4577 6.513393 GCACGATCATAATTTCCCTTACCTTG 60.513 42.308 0.00 0.00 0.00 3.61
3957 4598 1.609072 TCTATGCTAGCTAGTGGCACG 59.391 52.381 21.62 9.70 46.85 5.34
3979 4620 1.283029 AGTTGGTGCTAGCCATCACAT 59.717 47.619 13.29 0.00 38.48 3.21
3981 4622 1.826385 AAGTTGGTGCTAGCCATCAC 58.174 50.000 13.29 3.02 38.48 3.06
3983 4624 3.578688 CAAAAAGTTGGTGCTAGCCATC 58.421 45.455 13.29 3.18 38.48 3.51
3990 4631 4.009002 ACAATTTGCAAAAAGTTGGTGCT 58.991 34.783 21.77 4.65 39.09 4.40
3994 4635 4.035441 CCTCCACAATTTGCAAAAAGTTGG 59.965 41.667 21.77 20.44 35.10 3.77
3998 4639 4.508861 CAGTCCTCCACAATTTGCAAAAAG 59.491 41.667 17.19 13.76 0.00 2.27
4002 4643 2.942804 TCAGTCCTCCACAATTTGCAA 58.057 42.857 0.00 0.00 0.00 4.08
4017 4658 3.665190 AGTTCGATCCAAGGTTTCAGTC 58.335 45.455 0.00 0.00 0.00 3.51
4032 4676 2.654749 ATGTGATCAGCGAAGTTCGA 57.345 45.000 28.66 8.57 43.74 3.71
4033 4677 3.369147 AGAAATGTGATCAGCGAAGTTCG 59.631 43.478 20.87 20.87 43.89 3.95
4034 4678 4.491602 CGAGAAATGTGATCAGCGAAGTTC 60.492 45.833 0.00 0.00 0.00 3.01
4035 4679 3.369147 CGAGAAATGTGATCAGCGAAGTT 59.631 43.478 0.00 0.00 0.00 2.66
4036 4680 2.926200 CGAGAAATGTGATCAGCGAAGT 59.074 45.455 0.00 0.00 0.00 3.01
4037 4681 3.182182 TCGAGAAATGTGATCAGCGAAG 58.818 45.455 0.00 0.00 0.00 3.79
4038 4682 3.230743 TCGAGAAATGTGATCAGCGAA 57.769 42.857 0.00 0.00 0.00 4.70
4039 4683 2.939460 TCGAGAAATGTGATCAGCGA 57.061 45.000 0.00 0.00 0.00 4.93
4040 4684 2.285486 GCTTCGAGAAATGTGATCAGCG 60.285 50.000 0.00 0.00 0.00 5.18
4041 4685 2.031437 GGCTTCGAGAAATGTGATCAGC 59.969 50.000 0.00 0.00 0.00 4.26
4042 4686 3.063180 GTGGCTTCGAGAAATGTGATCAG 59.937 47.826 0.00 0.00 0.00 2.90
4043 4687 3.002791 GTGGCTTCGAGAAATGTGATCA 58.997 45.455 0.00 0.00 0.00 2.92
4044 4688 3.063180 CAGTGGCTTCGAGAAATGTGATC 59.937 47.826 0.00 0.00 0.00 2.92
4045 4689 3.005554 CAGTGGCTTCGAGAAATGTGAT 58.994 45.455 0.00 0.00 0.00 3.06
4046 4690 2.416747 CAGTGGCTTCGAGAAATGTGA 58.583 47.619 0.00 0.00 0.00 3.58
4047 4691 1.135859 GCAGTGGCTTCGAGAAATGTG 60.136 52.381 0.00 0.00 36.96 3.21
4048 4692 1.160137 GCAGTGGCTTCGAGAAATGT 58.840 50.000 0.00 0.00 36.96 2.71
4049 4693 1.159285 TGCAGTGGCTTCGAGAAATG 58.841 50.000 0.00 0.00 41.91 2.32
4050 4694 1.741706 CATGCAGTGGCTTCGAGAAAT 59.258 47.619 0.00 0.00 41.91 2.17
4051 4695 1.159285 CATGCAGTGGCTTCGAGAAA 58.841 50.000 0.00 0.00 41.91 2.52
4052 4696 0.321346 TCATGCAGTGGCTTCGAGAA 59.679 50.000 0.00 0.00 41.91 2.87
4053 4697 0.390340 GTCATGCAGTGGCTTCGAGA 60.390 55.000 0.00 0.00 41.91 4.04
4054 4698 0.671472 TGTCATGCAGTGGCTTCGAG 60.671 55.000 0.00 0.00 41.91 4.04
4055 4699 0.036105 ATGTCATGCAGTGGCTTCGA 60.036 50.000 0.00 0.00 41.91 3.71
4094 5189 1.594833 CGAAGGGATGAACGGGTCA 59.405 57.895 0.00 0.00 41.67 4.02
4096 5191 2.267961 GCGAAGGGATGAACGGGT 59.732 61.111 0.00 0.00 0.00 5.28
4102 5197 3.833645 CCGGACGCGAAGGGATGA 61.834 66.667 15.93 0.00 46.37 2.92
4119 5214 2.362397 TGAAGATGAGTGAGGCGGTATC 59.638 50.000 0.00 0.00 0.00 2.24
4124 5219 0.247460 TGGTGAAGATGAGTGAGGCG 59.753 55.000 0.00 0.00 0.00 5.52
4131 5226 3.133542 TGCTACTGGATGGTGAAGATGAG 59.866 47.826 0.00 0.00 0.00 2.90
4147 5242 2.187946 GCCCTGCACGATGCTACT 59.812 61.111 10.54 0.00 45.31 2.57
4148 5243 3.264897 CGCCCTGCACGATGCTAC 61.265 66.667 10.54 0.00 45.31 3.58
4189 5284 2.675423 AGTGAGGTAGCGGCGACA 60.675 61.111 12.98 0.00 0.00 4.35
4198 5293 1.078214 GCATGGCAGCAGTGAGGTA 60.078 57.895 0.00 0.00 0.00 3.08
4233 5328 1.263776 GATGTTCTCTGACTCGTGCG 58.736 55.000 0.00 0.00 0.00 5.34
4236 5331 0.171455 GCCGATGTTCTCTGACTCGT 59.829 55.000 0.00 0.00 0.00 4.18
4238 5333 2.593346 ATGCCGATGTTCTCTGACTC 57.407 50.000 0.00 0.00 0.00 3.36
4309 5449 3.518590 ACAGTCGATCGGTATTCAAACC 58.481 45.455 16.41 0.00 36.08 3.27
4314 5454 4.808077 TGTCTACAGTCGATCGGTATTC 57.192 45.455 16.41 6.48 0.00 1.75
4319 5459 2.161808 AGTGTTGTCTACAGTCGATCGG 59.838 50.000 16.41 1.30 35.45 4.18
4372 5598 2.419021 CCAACATCATGGCCAATGGTTC 60.419 50.000 19.32 0.00 36.86 3.62
4374 5600 1.196911 CCAACATCATGGCCAATGGT 58.803 50.000 19.32 11.79 36.86 3.55
4442 6069 9.522804 CTGAAATCATTAGGTAGTCTACTTGTC 57.477 37.037 9.85 0.00 0.00 3.18
4444 6071 7.981789 TGCTGAAATCATTAGGTAGTCTACTTG 59.018 37.037 9.85 3.89 0.00 3.16
4445 6072 7.982354 GTGCTGAAATCATTAGGTAGTCTACTT 59.018 37.037 9.85 4.94 0.00 2.24
4447 6074 7.265673 TGTGCTGAAATCATTAGGTAGTCTAC 58.734 38.462 0.95 0.95 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.