Multiple sequence alignment - TraesCS7B01G251900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G251900 chr7B 100.000 5145 0 0 1 5145 464557786 464562930 0.000000e+00 9502
1 TraesCS7B01G251900 chr7D 96.748 3536 85 10 559 4083 447065530 447069046 0.000000e+00 5866
2 TraesCS7B01G251900 chr7D 89.744 1092 43 28 4087 5145 447069212 447070267 0.000000e+00 1332
3 TraesCS7B01G251900 chr7D 84.874 119 12 3 1645 1763 447066743 447066855 1.170000e-21 115
4 TraesCS7B01G251900 chr7A 93.031 1564 77 9 1773 3330 498935671 498937208 0.000000e+00 2255
5 TraesCS7B01G251900 chr7A 92.851 1217 73 6 559 1773 498934594 498935798 0.000000e+00 1753
6 TraesCS7B01G251900 chr7A 90.840 524 37 4 4624 5145 498938881 498939395 0.000000e+00 691
7 TraesCS7B01G251900 chr7A 94.377 409 20 2 3325 3732 498937363 498937769 4.370000e-175 625
8 TraesCS7B01G251900 chr7A 81.193 553 66 22 4087 4623 498938288 498938818 1.330000e-110 411
9 TraesCS7B01G251900 chr7A 84.153 366 24 8 3732 4083 498937798 498938143 1.790000e-84 324
10 TraesCS7B01G251900 chr7A 85.119 168 20 5 398 563 8765579 8765743 3.190000e-37 167
11 TraesCS7B01G251900 chr7A 85.000 160 19 5 406 563 471546414 471546258 1.920000e-34 158
12 TraesCS7B01G251900 chr7A 83.636 165 24 3 398 561 625706762 625706924 8.920000e-33 152
13 TraesCS7B01G251900 chr3B 80.805 323 50 9 247 563 250270708 250270392 5.150000e-60 243
14 TraesCS7B01G251900 chr2B 85.030 167 20 5 398 562 65300524 65300687 1.150000e-36 165
15 TraesCS7B01G251900 chr5B 84.524 168 21 5 398 563 20646783 20646947 1.480000e-35 161
16 TraesCS7B01G251900 chr5B 82.222 180 25 7 401 576 20646376 20646200 1.150000e-31 148
17 TraesCS7B01G251900 chr3A 84.663 163 22 3 401 562 716971770 716971610 5.330000e-35 159
18 TraesCS7B01G251900 chr1A 84.431 167 20 6 398 562 579950471 579950633 5.330000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G251900 chr7B 464557786 464562930 5144 False 9502.000000 9502 100.000000 1 5145 1 chr7B.!!$F1 5144
1 TraesCS7B01G251900 chr7D 447065530 447070267 4737 False 2437.666667 5866 90.455333 559 5145 3 chr7D.!!$F1 4586
2 TraesCS7B01G251900 chr7A 498934594 498939395 4801 False 1009.833333 2255 89.407500 559 5145 6 chr7A.!!$F3 4586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.037419 TGCTATGCTCACGTGCTTGA 60.037 50.000 11.67 0.00 0.00 3.02 F
292 293 0.179166 AAAATAGTGCATGCCGCGTG 60.179 50.000 16.68 8.31 46.97 5.34 F
1083 1087 0.036022 GCTCTGGTTCAGGCTTCTGT 59.964 55.000 0.00 0.00 39.45 3.41 F
1223 1227 0.108585 GAGGAGACCACAAAGCACCA 59.891 55.000 0.00 0.00 0.00 4.17 F
1313 1317 0.395724 CCAAATGCCCACCCTAGTCC 60.396 60.000 0.00 0.00 0.00 3.85 F
2880 2889 1.210478 ACGGGTGCTAATTGCTCTCAT 59.790 47.619 0.00 0.00 43.37 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1012 1016 0.401738 CCGGCAGGATGGGATTGTAT 59.598 55.000 0.00 0.0 41.02 2.29 R
1813 1817 2.584965 TGAAATGAATAGGGGAGGCCAA 59.415 45.455 5.01 0.0 0.00 4.52 R
2703 2712 1.538950 CAGAAAGTTTCCAGCAGAGCC 59.461 52.381 12.05 0.0 0.00 4.70 R
2714 2723 3.319122 GGATGCTGTTGTCCAGAAAGTTT 59.681 43.478 0.00 0.0 44.49 2.66 R
3278 3289 1.024271 CACCTTGTATTGGGGCATCG 58.976 55.000 0.00 0.0 0.00 3.84 R
4399 4781 0.179119 CGGGTAGCCTGTAGTTTCCG 60.179 60.000 9.73 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.860326 GCGGCATATGCATTGTTTTCC 59.140 47.619 28.07 7.32 44.36 3.13
21 22 2.481795 GCGGCATATGCATTGTTTTCCT 60.482 45.455 28.07 0.00 44.36 3.36
22 23 3.784338 CGGCATATGCATTGTTTTCCTT 58.216 40.909 28.07 0.00 44.36 3.36
23 24 4.736168 GCGGCATATGCATTGTTTTCCTTA 60.736 41.667 28.07 0.00 44.36 2.69
24 25 5.347342 CGGCATATGCATTGTTTTCCTTAA 58.653 37.500 28.07 0.00 44.36 1.85
25 26 5.809562 CGGCATATGCATTGTTTTCCTTAAA 59.190 36.000 28.07 0.00 44.36 1.52
26 27 6.312426 CGGCATATGCATTGTTTTCCTTAAAA 59.688 34.615 28.07 0.00 44.36 1.52
27 28 7.011295 CGGCATATGCATTGTTTTCCTTAAAAT 59.989 33.333 28.07 0.00 44.36 1.82
28 29 9.323985 GGCATATGCATTGTTTTCCTTAAAATA 57.676 29.630 28.07 0.00 44.36 1.40
38 39 8.129496 TGTTTTCCTTAAAATATCTTGACCCC 57.871 34.615 0.00 0.00 36.96 4.95
39 40 7.094118 TGTTTTCCTTAAAATATCTTGACCCCG 60.094 37.037 0.00 0.00 36.96 5.73
40 41 4.457466 TCCTTAAAATATCTTGACCCCGC 58.543 43.478 0.00 0.00 0.00 6.13
41 42 4.165372 TCCTTAAAATATCTTGACCCCGCT 59.835 41.667 0.00 0.00 0.00 5.52
42 43 4.275936 CCTTAAAATATCTTGACCCCGCTG 59.724 45.833 0.00 0.00 0.00 5.18
43 44 2.348411 AAATATCTTGACCCCGCTGG 57.652 50.000 0.00 0.00 41.37 4.85
44 45 1.507140 AATATCTTGACCCCGCTGGA 58.493 50.000 0.00 0.00 38.00 3.86
45 46 1.734655 ATATCTTGACCCCGCTGGAT 58.265 50.000 0.00 0.00 38.00 3.41
46 47 1.048601 TATCTTGACCCCGCTGGATC 58.951 55.000 0.00 0.00 38.00 3.36
47 48 1.700042 ATCTTGACCCCGCTGGATCC 61.700 60.000 4.20 4.20 38.00 3.36
48 49 3.406595 CTTGACCCCGCTGGATCCC 62.407 68.421 9.90 0.00 38.00 3.85
49 50 3.943137 TTGACCCCGCTGGATCCCT 62.943 63.158 9.90 0.00 38.00 4.20
50 51 3.551407 GACCCCGCTGGATCCCTC 61.551 72.222 9.90 0.00 38.00 4.30
51 52 4.095400 ACCCCGCTGGATCCCTCT 62.095 66.667 9.90 0.00 38.00 3.69
52 53 2.201490 CCCCGCTGGATCCCTCTA 59.799 66.667 9.90 0.00 35.39 2.43
53 54 2.210711 CCCCGCTGGATCCCTCTAC 61.211 68.421 9.90 0.00 35.39 2.59
54 55 1.457643 CCCGCTGGATCCCTCTACA 60.458 63.158 9.90 0.00 0.00 2.74
55 56 1.742768 CCGCTGGATCCCTCTACAC 59.257 63.158 9.90 0.00 0.00 2.90
56 57 1.043116 CCGCTGGATCCCTCTACACA 61.043 60.000 9.90 0.00 0.00 3.72
57 58 0.824109 CGCTGGATCCCTCTACACAA 59.176 55.000 9.90 0.00 0.00 3.33
58 59 1.414181 CGCTGGATCCCTCTACACAAT 59.586 52.381 9.90 0.00 0.00 2.71
59 60 2.158900 CGCTGGATCCCTCTACACAATT 60.159 50.000 9.90 0.00 0.00 2.32
60 61 3.682718 CGCTGGATCCCTCTACACAATTT 60.683 47.826 9.90 0.00 0.00 1.82
61 62 4.273318 GCTGGATCCCTCTACACAATTTT 58.727 43.478 9.90 0.00 0.00 1.82
62 63 5.437060 GCTGGATCCCTCTACACAATTTTA 58.563 41.667 9.90 0.00 0.00 1.52
63 64 6.064717 GCTGGATCCCTCTACACAATTTTAT 58.935 40.000 9.90 0.00 0.00 1.40
64 65 6.205658 GCTGGATCCCTCTACACAATTTTATC 59.794 42.308 9.90 0.00 0.00 1.75
65 66 6.601332 TGGATCCCTCTACACAATTTTATCC 58.399 40.000 9.90 0.00 0.00 2.59
66 67 6.389869 TGGATCCCTCTACACAATTTTATCCT 59.610 38.462 9.90 0.00 32.26 3.24
67 68 6.712547 GGATCCCTCTACACAATTTTATCCTG 59.287 42.308 0.00 0.00 0.00 3.86
68 69 6.636454 TCCCTCTACACAATTTTATCCTGT 57.364 37.500 0.00 0.00 0.00 4.00
69 70 6.650120 TCCCTCTACACAATTTTATCCTGTC 58.350 40.000 0.00 0.00 0.00 3.51
70 71 6.214615 TCCCTCTACACAATTTTATCCTGTCA 59.785 38.462 0.00 0.00 0.00 3.58
71 72 7.056635 CCCTCTACACAATTTTATCCTGTCAT 58.943 38.462 0.00 0.00 0.00 3.06
72 73 7.012704 CCCTCTACACAATTTTATCCTGTCATG 59.987 40.741 0.00 0.00 0.00 3.07
73 74 7.554118 CCTCTACACAATTTTATCCTGTCATGT 59.446 37.037 0.00 0.00 0.00 3.21
74 75 8.492673 TCTACACAATTTTATCCTGTCATGTC 57.507 34.615 0.00 0.00 0.00 3.06
75 76 8.100164 TCTACACAATTTTATCCTGTCATGTCA 58.900 33.333 0.00 0.00 0.00 3.58
76 77 7.707624 ACACAATTTTATCCTGTCATGTCAT 57.292 32.000 0.00 0.00 0.00 3.06
77 78 7.541162 ACACAATTTTATCCTGTCATGTCATG 58.459 34.615 6.47 6.47 0.00 3.07
78 79 6.474427 CACAATTTTATCCTGTCATGTCATGC 59.526 38.462 8.03 4.35 0.00 4.06
79 80 6.379133 ACAATTTTATCCTGTCATGTCATGCT 59.621 34.615 8.03 0.00 0.00 3.79
80 81 6.630444 ATTTTATCCTGTCATGTCATGCTC 57.370 37.500 8.03 4.68 0.00 4.26
81 82 5.363562 TTTATCCTGTCATGTCATGCTCT 57.636 39.130 8.03 0.00 0.00 4.09
82 83 2.975732 TCCTGTCATGTCATGCTCTC 57.024 50.000 8.03 0.10 0.00 3.20
83 84 1.483827 TCCTGTCATGTCATGCTCTCC 59.516 52.381 8.03 0.00 0.00 3.71
84 85 1.208776 CCTGTCATGTCATGCTCTCCA 59.791 52.381 8.03 0.00 0.00 3.86
85 86 2.158798 CCTGTCATGTCATGCTCTCCAT 60.159 50.000 8.03 0.00 33.39 3.41
93 94 2.251409 CATGCTCTCCATGTACCTGG 57.749 55.000 10.73 10.73 45.05 4.45
94 95 1.764723 CATGCTCTCCATGTACCTGGA 59.235 52.381 17.71 17.71 45.05 3.86
95 96 1.951209 TGCTCTCCATGTACCTGGAA 58.049 50.000 18.99 10.35 44.59 3.53
96 97 1.833630 TGCTCTCCATGTACCTGGAAG 59.166 52.381 18.99 17.94 44.59 3.46
97 98 1.474143 GCTCTCCATGTACCTGGAAGC 60.474 57.143 24.12 24.12 44.59 3.86
98 99 1.139853 CTCTCCATGTACCTGGAAGCC 59.860 57.143 18.99 0.00 44.59 4.35
99 100 0.181350 CTCCATGTACCTGGAAGCCC 59.819 60.000 18.99 0.00 44.59 5.19
100 101 0.253160 TCCATGTACCTGGAAGCCCT 60.253 55.000 16.62 0.00 42.36 5.19
101 102 0.625849 CCATGTACCTGGAAGCCCTT 59.374 55.000 11.50 0.00 38.69 3.95
102 103 1.005924 CCATGTACCTGGAAGCCCTTT 59.994 52.381 11.50 0.00 38.69 3.11
103 104 2.557452 CCATGTACCTGGAAGCCCTTTT 60.557 50.000 11.50 0.00 38.69 2.27
104 105 3.165071 CATGTACCTGGAAGCCCTTTTT 58.835 45.455 0.00 0.00 0.00 1.94
125 126 7.642071 TTTTTCAGCAATAAATCTCACTTGC 57.358 32.000 0.00 0.00 43.28 4.01
126 127 5.963176 TTCAGCAATAAATCTCACTTGCA 57.037 34.783 8.60 0.00 44.90 4.08
127 128 6.519679 TTCAGCAATAAATCTCACTTGCAT 57.480 33.333 8.60 0.00 44.90 3.96
128 129 5.886992 TCAGCAATAAATCTCACTTGCATG 58.113 37.500 8.60 0.00 44.90 4.06
129 130 4.503007 CAGCAATAAATCTCACTTGCATGC 59.497 41.667 11.82 11.82 44.90 4.06
130 131 4.401519 AGCAATAAATCTCACTTGCATGCT 59.598 37.500 20.33 0.00 44.90 3.79
131 132 5.591472 AGCAATAAATCTCACTTGCATGCTA 59.409 36.000 20.33 10.88 44.90 3.49
132 133 6.264744 AGCAATAAATCTCACTTGCATGCTAT 59.735 34.615 20.33 0.69 44.90 2.97
133 134 6.362551 GCAATAAATCTCACTTGCATGCTATG 59.637 38.462 20.33 13.97 42.66 2.23
143 144 2.686602 CATGCTATGCTCACGTGCT 58.313 52.632 11.67 0.00 0.00 4.40
144 145 1.012086 CATGCTATGCTCACGTGCTT 58.988 50.000 11.67 0.72 0.00 3.91
145 146 1.012086 ATGCTATGCTCACGTGCTTG 58.988 50.000 11.67 4.66 0.00 4.01
146 147 0.037419 TGCTATGCTCACGTGCTTGA 60.037 50.000 11.67 0.00 0.00 3.02
147 148 1.078709 GCTATGCTCACGTGCTTGAA 58.921 50.000 11.67 0.00 0.00 2.69
148 149 1.201965 GCTATGCTCACGTGCTTGAAC 60.202 52.381 11.67 0.00 0.00 3.18
149 150 2.068519 CTATGCTCACGTGCTTGAACA 58.931 47.619 11.67 2.64 0.00 3.18
150 151 1.308047 ATGCTCACGTGCTTGAACAA 58.692 45.000 11.67 0.00 0.00 2.83
151 152 0.376852 TGCTCACGTGCTTGAACAAC 59.623 50.000 11.67 0.00 0.00 3.32
152 153 0.657840 GCTCACGTGCTTGAACAACT 59.342 50.000 11.67 0.00 0.00 3.16
153 154 1.064060 GCTCACGTGCTTGAACAACTT 59.936 47.619 11.67 0.00 0.00 2.66
154 155 2.286833 GCTCACGTGCTTGAACAACTTA 59.713 45.455 11.67 0.00 0.00 2.24
155 156 3.604772 GCTCACGTGCTTGAACAACTTAG 60.605 47.826 11.67 0.00 0.00 2.18
156 157 2.286833 TCACGTGCTTGAACAACTTAGC 59.713 45.455 11.67 0.00 0.00 3.09
157 158 2.287915 CACGTGCTTGAACAACTTAGCT 59.712 45.455 0.82 0.00 34.77 3.32
158 159 2.544267 ACGTGCTTGAACAACTTAGCTC 59.456 45.455 0.00 0.00 34.77 4.09
159 160 2.096218 CGTGCTTGAACAACTTAGCTCC 60.096 50.000 0.00 0.00 34.77 4.70
160 161 2.226674 GTGCTTGAACAACTTAGCTCCC 59.773 50.000 0.00 0.00 34.77 4.30
161 162 1.813178 GCTTGAACAACTTAGCTCCCC 59.187 52.381 0.00 0.00 0.00 4.81
162 163 2.814097 GCTTGAACAACTTAGCTCCCCA 60.814 50.000 0.00 0.00 0.00 4.96
163 164 2.561478 TGAACAACTTAGCTCCCCAC 57.439 50.000 0.00 0.00 0.00 4.61
164 165 2.054799 TGAACAACTTAGCTCCCCACT 58.945 47.619 0.00 0.00 0.00 4.00
165 166 3.244582 TGAACAACTTAGCTCCCCACTA 58.755 45.455 0.00 0.00 0.00 2.74
166 167 3.844211 TGAACAACTTAGCTCCCCACTAT 59.156 43.478 0.00 0.00 0.00 2.12
167 168 3.914426 ACAACTTAGCTCCCCACTATG 57.086 47.619 0.00 0.00 0.00 2.23
168 169 2.092914 ACAACTTAGCTCCCCACTATGC 60.093 50.000 0.00 0.00 0.00 3.14
169 170 1.132500 ACTTAGCTCCCCACTATGCC 58.868 55.000 0.00 0.00 0.00 4.40
170 171 1.344496 ACTTAGCTCCCCACTATGCCT 60.344 52.381 0.00 0.00 0.00 4.75
171 172 1.071385 CTTAGCTCCCCACTATGCCTG 59.929 57.143 0.00 0.00 0.00 4.85
172 173 1.410850 TAGCTCCCCACTATGCCTGC 61.411 60.000 0.00 0.00 0.00 4.85
173 174 2.109799 CTCCCCACTATGCCTGCG 59.890 66.667 0.00 0.00 0.00 5.18
174 175 4.175337 TCCCCACTATGCCTGCGC 62.175 66.667 0.00 0.00 0.00 6.09
180 181 4.285149 CTATGCCTGCGCGCGTTC 62.285 66.667 32.35 16.47 38.08 3.95
191 192 2.094539 CGCGTTCGCAGTGTCATG 59.905 61.111 16.98 0.00 0.00 3.07
192 193 2.202222 GCGTTCGCAGTGTCATGC 60.202 61.111 12.33 0.00 42.95 4.06
193 194 2.953605 GCGTTCGCAGTGTCATGCA 61.954 57.895 12.33 0.00 46.87 3.96
194 195 1.154599 CGTTCGCAGTGTCATGCAC 60.155 57.895 11.00 11.00 46.87 4.57
201 202 4.107051 GTGTCATGCACGCCTGGC 62.107 66.667 9.11 9.11 38.45 4.85
244 245 4.933563 TGCGCTCCAGCACAGCAA 62.934 61.111 9.73 0.00 42.92 3.91
245 246 4.395583 GCGCTCCAGCACAGCAAC 62.396 66.667 0.00 0.00 42.21 4.17
246 247 3.730761 CGCTCCAGCACAGCAACC 61.731 66.667 0.00 0.00 42.21 3.77
247 248 3.368571 GCTCCAGCACAGCAACCC 61.369 66.667 0.00 0.00 41.59 4.11
248 249 3.052082 CTCCAGCACAGCAACCCG 61.052 66.667 0.00 0.00 0.00 5.28
254 255 4.988598 CACAGCAACCCGCCTCGT 62.989 66.667 0.00 0.00 44.04 4.18
255 256 3.307906 ACAGCAACCCGCCTCGTA 61.308 61.111 0.00 0.00 44.04 3.43
256 257 2.509336 CAGCAACCCGCCTCGTAG 60.509 66.667 0.00 0.00 44.04 3.51
257 258 4.452733 AGCAACCCGCCTCGTAGC 62.453 66.667 0.00 0.00 44.04 3.58
258 259 4.752879 GCAACCCGCCTCGTAGCA 62.753 66.667 0.00 0.00 32.94 3.49
259 260 2.813908 CAACCCGCCTCGTAGCAC 60.814 66.667 0.00 0.00 0.00 4.40
260 261 2.995574 AACCCGCCTCGTAGCACT 60.996 61.111 0.00 0.00 0.00 4.40
261 262 3.003113 AACCCGCCTCGTAGCACTC 62.003 63.158 0.00 0.00 0.00 3.51
262 263 3.449227 CCCGCCTCGTAGCACTCA 61.449 66.667 0.00 0.00 0.00 3.41
263 264 2.571757 CCGCCTCGTAGCACTCAA 59.428 61.111 0.00 0.00 0.00 3.02
264 265 1.080093 CCGCCTCGTAGCACTCAAA 60.080 57.895 0.00 0.00 0.00 2.69
265 266 1.352156 CCGCCTCGTAGCACTCAAAC 61.352 60.000 0.00 0.00 0.00 2.93
266 267 0.666274 CGCCTCGTAGCACTCAAACA 60.666 55.000 0.00 0.00 0.00 2.83
267 268 1.726853 GCCTCGTAGCACTCAAACAT 58.273 50.000 0.00 0.00 0.00 2.71
268 269 2.734175 CGCCTCGTAGCACTCAAACATA 60.734 50.000 0.00 0.00 0.00 2.29
269 270 3.458189 GCCTCGTAGCACTCAAACATAT 58.542 45.455 0.00 0.00 0.00 1.78
270 271 3.246226 GCCTCGTAGCACTCAAACATATG 59.754 47.826 0.00 0.00 0.00 1.78
271 272 4.682787 CCTCGTAGCACTCAAACATATGA 58.317 43.478 10.38 0.00 0.00 2.15
272 273 5.109210 CCTCGTAGCACTCAAACATATGAA 58.891 41.667 10.38 0.00 0.00 2.57
273 274 5.580691 CCTCGTAGCACTCAAACATATGAAA 59.419 40.000 10.38 0.00 0.00 2.69
274 275 6.092122 CCTCGTAGCACTCAAACATATGAAAA 59.908 38.462 10.38 0.00 0.00 2.29
275 276 7.360861 CCTCGTAGCACTCAAACATATGAAAAA 60.361 37.037 10.38 0.00 0.00 1.94
290 291 3.327464 AAAAATAGTGCATGCCGCG 57.673 47.368 16.68 0.00 46.97 6.46
291 292 0.525761 AAAAATAGTGCATGCCGCGT 59.474 45.000 16.68 0.00 46.97 6.01
292 293 0.179166 AAAATAGTGCATGCCGCGTG 60.179 50.000 16.68 8.31 46.97 5.34
293 294 1.992233 AAATAGTGCATGCCGCGTGG 61.992 55.000 16.68 11.67 46.97 4.94
294 295 3.680620 ATAGTGCATGCCGCGTGGT 62.681 57.895 17.91 0.00 46.97 4.16
306 307 4.624364 CGTGGTGGAGTGGCTGCA 62.624 66.667 0.50 0.00 0.00 4.41
310 311 3.958860 GTGGAGTGGCTGCACCCT 61.959 66.667 9.19 0.00 44.99 4.34
311 312 3.640407 TGGAGTGGCTGCACCCTC 61.640 66.667 0.50 2.99 37.83 4.30
312 313 4.416738 GGAGTGGCTGCACCCTCC 62.417 72.222 18.02 18.02 44.05 4.30
313 314 3.640407 GAGTGGCTGCACCCTCCA 61.640 66.667 0.50 0.00 37.83 3.86
324 325 3.636231 CCCTCCACGTGGGCTGAA 61.636 66.667 33.40 13.74 37.99 3.02
325 326 2.429930 CCTCCACGTGGGCTGAAA 59.570 61.111 33.40 12.97 36.21 2.69
326 327 1.672356 CCTCCACGTGGGCTGAAAG 60.672 63.158 33.40 21.42 36.21 2.62
337 338 4.645809 CTGAAAGCTAGGCCCCAC 57.354 61.111 0.00 0.00 0.00 4.61
338 339 1.450312 CTGAAAGCTAGGCCCCACG 60.450 63.158 0.00 0.00 0.00 4.94
339 340 2.124695 GAAAGCTAGGCCCCACGG 60.125 66.667 0.00 0.00 0.00 4.94
351 352 3.953775 CCACGGCCCCACTCTGTT 61.954 66.667 0.00 0.00 0.00 3.16
352 353 2.113139 CACGGCCCCACTCTGTTT 59.887 61.111 0.00 0.00 0.00 2.83
353 354 1.966451 CACGGCCCCACTCTGTTTC 60.966 63.158 0.00 0.00 0.00 2.78
354 355 2.742372 CGGCCCCACTCTGTTTCG 60.742 66.667 0.00 0.00 0.00 3.46
355 356 2.430367 GGCCCCACTCTGTTTCGT 59.570 61.111 0.00 0.00 0.00 3.85
356 357 1.671379 GGCCCCACTCTGTTTCGTC 60.671 63.158 0.00 0.00 0.00 4.20
357 358 2.027625 GCCCCACTCTGTTTCGTCG 61.028 63.158 0.00 0.00 0.00 5.12
358 359 2.027625 CCCCACTCTGTTTCGTCGC 61.028 63.158 0.00 0.00 0.00 5.19
359 360 2.372690 CCCACTCTGTTTCGTCGCG 61.373 63.158 0.00 0.00 0.00 5.87
360 361 2.372690 CCACTCTGTTTCGTCGCGG 61.373 63.158 6.13 0.00 0.00 6.46
361 362 2.733593 ACTCTGTTTCGTCGCGGC 60.734 61.111 6.13 1.93 0.00 6.53
362 363 2.430921 CTCTGTTTCGTCGCGGCT 60.431 61.111 9.90 0.00 0.00 5.52
363 364 2.430244 TCTGTTTCGTCGCGGCTC 60.430 61.111 9.90 0.00 0.00 4.70
364 365 2.733218 CTGTTTCGTCGCGGCTCA 60.733 61.111 9.90 1.79 0.00 4.26
365 366 3.000080 CTGTTTCGTCGCGGCTCAC 62.000 63.158 9.90 2.69 0.00 3.51
366 367 3.033764 GTTTCGTCGCGGCTCACA 61.034 61.111 9.90 0.00 0.00 3.58
367 368 2.733218 TTTCGTCGCGGCTCACAG 60.733 61.111 9.90 0.00 0.00 3.66
370 371 4.476410 CGTCGCGGCTCACAGCTA 62.476 66.667 9.90 0.00 41.99 3.32
371 372 2.580867 GTCGCGGCTCACAGCTAG 60.581 66.667 1.90 0.00 41.99 3.42
372 373 4.498520 TCGCGGCTCACAGCTAGC 62.499 66.667 6.62 6.62 41.99 3.42
374 375 4.803426 GCGGCTCACAGCTAGCGT 62.803 66.667 9.55 7.74 41.99 5.07
375 376 2.580867 CGGCTCACAGCTAGCGTC 60.581 66.667 9.55 0.00 41.99 5.19
376 377 2.888863 GGCTCACAGCTAGCGTCT 59.111 61.111 9.55 0.00 41.99 4.18
377 378 1.715862 CGGCTCACAGCTAGCGTCTA 61.716 60.000 9.55 0.85 41.99 2.59
378 379 0.671251 GGCTCACAGCTAGCGTCTAT 59.329 55.000 9.55 0.00 41.99 1.98
379 380 1.067821 GGCTCACAGCTAGCGTCTATT 59.932 52.381 9.55 0.00 41.99 1.73
380 381 2.482142 GGCTCACAGCTAGCGTCTATTT 60.482 50.000 9.55 0.00 41.99 1.40
381 382 2.792116 GCTCACAGCTAGCGTCTATTTC 59.208 50.000 9.55 0.00 38.45 2.17
382 383 3.490078 GCTCACAGCTAGCGTCTATTTCT 60.490 47.826 9.55 0.00 38.45 2.52
383 384 4.033990 TCACAGCTAGCGTCTATTTCTG 57.966 45.455 9.55 0.91 0.00 3.02
384 385 3.444034 TCACAGCTAGCGTCTATTTCTGT 59.556 43.478 9.55 1.61 34.08 3.41
385 386 4.082190 TCACAGCTAGCGTCTATTTCTGTT 60.082 41.667 9.55 0.00 31.75 3.16
386 387 4.627467 CACAGCTAGCGTCTATTTCTGTTT 59.373 41.667 9.55 0.00 31.75 2.83
387 388 4.865365 ACAGCTAGCGTCTATTTCTGTTTC 59.135 41.667 9.55 0.00 30.08 2.78
388 389 4.864806 CAGCTAGCGTCTATTTCTGTTTCA 59.135 41.667 9.55 0.00 0.00 2.69
389 390 4.865365 AGCTAGCGTCTATTTCTGTTTCAC 59.135 41.667 9.55 0.00 0.00 3.18
390 391 4.259451 GCTAGCGTCTATTTCTGTTTCACG 60.259 45.833 0.00 0.00 0.00 4.35
391 392 2.993899 AGCGTCTATTTCTGTTTCACGG 59.006 45.455 0.00 0.00 0.00 4.94
392 393 2.474032 GCGTCTATTTCTGTTTCACGGC 60.474 50.000 0.00 0.00 0.00 5.68
393 394 2.734606 CGTCTATTTCTGTTTCACGGCA 59.265 45.455 0.00 0.00 0.00 5.69
394 395 3.423123 CGTCTATTTCTGTTTCACGGCAC 60.423 47.826 0.00 0.00 0.00 5.01
395 396 3.071479 TCTATTTCTGTTTCACGGCACC 58.929 45.455 0.00 0.00 0.00 5.01
396 397 1.981256 ATTTCTGTTTCACGGCACCT 58.019 45.000 0.00 0.00 0.00 4.00
397 398 1.021202 TTTCTGTTTCACGGCACCTG 58.979 50.000 0.00 0.00 0.00 4.00
398 399 1.444119 TTCTGTTTCACGGCACCTGC 61.444 55.000 0.00 0.00 41.14 4.85
429 430 2.908940 GGATGCCGCCTTCCCATG 60.909 66.667 0.00 0.00 30.92 3.66
430 431 2.124151 GATGCCGCCTTCCCATGT 60.124 61.111 0.00 0.00 0.00 3.21
431 432 2.440796 ATGCCGCCTTCCCATGTG 60.441 61.111 0.00 0.00 0.00 3.21
432 433 4.738998 TGCCGCCTTCCCATGTGG 62.739 66.667 0.00 0.00 35.21 4.17
437 438 4.738998 CCTTCCCATGTGGCGGCA 62.739 66.667 7.97 7.97 0.00 5.69
438 439 3.136123 CTTCCCATGTGGCGGCAG 61.136 66.667 13.91 0.00 0.00 4.85
439 440 4.738998 TTCCCATGTGGCGGCAGG 62.739 66.667 13.91 10.70 0.00 4.85
485 486 3.314331 CCACGTCCCAGCTGGTCT 61.314 66.667 30.63 7.43 34.77 3.85
486 487 2.743718 CACGTCCCAGCTGGTCTT 59.256 61.111 30.63 14.26 34.77 3.01
487 488 1.071471 CACGTCCCAGCTGGTCTTT 59.929 57.895 30.63 10.08 34.77 2.52
488 489 0.535102 CACGTCCCAGCTGGTCTTTT 60.535 55.000 30.63 8.59 34.77 2.27
489 490 0.182775 ACGTCCCAGCTGGTCTTTTT 59.817 50.000 30.63 7.47 34.77 1.94
523 524 9.965824 TTTGATCTAAAAATGGTCTTTTCTGTC 57.034 29.630 0.00 0.00 31.15 3.51
524 525 8.690203 TGATCTAAAAATGGTCTTTTCTGTCA 57.310 30.769 0.00 0.00 31.15 3.58
525 526 9.300681 TGATCTAAAAATGGTCTTTTCTGTCAT 57.699 29.630 0.00 0.00 31.15 3.06
528 529 9.748708 TCTAAAAATGGTCTTTTCTGTCATTTG 57.251 29.630 0.00 0.00 37.86 2.32
529 530 6.849588 AAAATGGTCTTTTCTGTCATTTGC 57.150 33.333 0.00 0.00 37.86 3.68
530 531 5.534207 AATGGTCTTTTCTGTCATTTGCA 57.466 34.783 0.00 0.00 0.00 4.08
531 532 5.733620 ATGGTCTTTTCTGTCATTTGCAT 57.266 34.783 0.00 0.00 0.00 3.96
532 533 5.534207 TGGTCTTTTCTGTCATTTGCATT 57.466 34.783 0.00 0.00 0.00 3.56
533 534 5.291178 TGGTCTTTTCTGTCATTTGCATTG 58.709 37.500 0.00 0.00 0.00 2.82
534 535 5.068855 TGGTCTTTTCTGTCATTTGCATTGA 59.931 36.000 0.00 0.00 0.00 2.57
535 536 5.632347 GGTCTTTTCTGTCATTTGCATTGAG 59.368 40.000 0.38 0.00 0.00 3.02
536 537 5.118203 GTCTTTTCTGTCATTTGCATTGAGC 59.882 40.000 0.38 0.00 45.96 4.26
545 546 4.730487 GCATTGAGCAGGTGGTCT 57.270 55.556 10.35 0.00 44.79 3.85
546 547 2.952714 GCATTGAGCAGGTGGTCTT 58.047 52.632 10.35 0.00 44.79 3.01
547 548 1.251251 GCATTGAGCAGGTGGTCTTT 58.749 50.000 10.35 0.00 44.79 2.52
548 549 1.615392 GCATTGAGCAGGTGGTCTTTT 59.385 47.619 10.35 0.00 44.79 2.27
549 550 2.036346 GCATTGAGCAGGTGGTCTTTTT 59.964 45.455 10.35 0.00 44.79 1.94
550 551 3.645884 CATTGAGCAGGTGGTCTTTTTG 58.354 45.455 10.35 0.35 42.60 2.44
551 552 2.727123 TGAGCAGGTGGTCTTTTTGA 57.273 45.000 10.35 0.00 42.60 2.69
552 553 3.011566 TGAGCAGGTGGTCTTTTTGAA 57.988 42.857 10.35 0.00 42.60 2.69
553 554 2.687935 TGAGCAGGTGGTCTTTTTGAAC 59.312 45.455 10.35 0.00 42.60 3.18
554 555 2.687935 GAGCAGGTGGTCTTTTTGAACA 59.312 45.455 1.86 0.00 40.62 3.18
555 556 3.096092 AGCAGGTGGTCTTTTTGAACAA 58.904 40.909 0.00 0.00 44.99 2.83
556 557 3.513515 AGCAGGTGGTCTTTTTGAACAAA 59.486 39.130 0.00 0.00 44.99 2.83
557 558 4.020662 AGCAGGTGGTCTTTTTGAACAAAA 60.021 37.500 8.37 8.37 44.99 2.44
749 751 4.723248 CGCAGGTATTCTTCTTTCCAAAC 58.277 43.478 0.00 0.00 0.00 2.93
753 755 6.430000 GCAGGTATTCTTCTTTCCAAACACTA 59.570 38.462 0.00 0.00 0.00 2.74
764 766 6.553852 TCTTTCCAAACACTACTCCTCTACTT 59.446 38.462 0.00 0.00 0.00 2.24
771 773 4.043059 ACACTACTCCTCTACTTCAGTGGA 59.957 45.833 0.00 0.00 43.21 4.02
1012 1016 3.026694 TCCTCTCTCATGCAGAATCGAA 58.973 45.455 0.00 0.00 0.00 3.71
1083 1087 0.036022 GCTCTGGTTCAGGCTTCTGT 59.964 55.000 0.00 0.00 39.45 3.41
1131 1135 3.828451 CTGTCAACCCCTTCACATCATTT 59.172 43.478 0.00 0.00 0.00 2.32
1193 1197 3.254166 GCCATATTGCAGTGGAAATCGAT 59.746 43.478 16.33 0.00 37.72 3.59
1223 1227 0.108585 GAGGAGACCACAAAGCACCA 59.891 55.000 0.00 0.00 0.00 4.17
1311 1315 1.697297 CCCAAATGCCCACCCTAGT 59.303 57.895 0.00 0.00 0.00 2.57
1313 1317 0.395724 CCAAATGCCCACCCTAGTCC 60.396 60.000 0.00 0.00 0.00 3.85
1329 1333 6.849697 ACCCTAGTCCATCCATTATGAACTAA 59.150 38.462 0.00 0.00 37.86 2.24
1357 1361 5.630415 TCTTTCTGTGATATTACCCCCTG 57.370 43.478 0.00 0.00 0.00 4.45
1531 1535 7.801716 TTTTGATAAGGATACCTGTGTATGC 57.198 36.000 0.00 0.00 43.83 3.14
1694 1698 1.308069 CCACATTTCACTGGCCTCCG 61.308 60.000 3.32 0.00 0.00 4.63
1715 1719 3.060272 CGCTATTCATTACAGAAGCGTGG 60.060 47.826 6.38 0.00 37.39 4.94
1844 1848 5.337009 CCCCTATTCATTTCATAAGCATGCC 60.337 44.000 15.66 0.00 31.73 4.40
1845 1849 5.479375 CCCTATTCATTTCATAAGCATGCCT 59.521 40.000 15.66 3.39 31.73 4.75
1846 1850 6.387465 CCTATTCATTTCATAAGCATGCCTG 58.613 40.000 15.66 10.10 31.73 4.85
2090 2094 2.880268 TGCTGTTCACTGGAAATCTGTG 59.120 45.455 0.00 0.00 43.81 3.66
2703 2712 4.269844 GTGTAGCACCCACAACAAAAATTG 59.730 41.667 0.00 0.00 35.59 2.32
2714 2723 2.318908 ACAAAAATTGGCTCTGCTGGA 58.681 42.857 0.00 0.00 34.12 3.86
2771 2780 2.598686 TGCTGCAAAATGCTGAAACA 57.401 40.000 12.56 0.00 45.31 2.83
2863 2872 9.755064 CTTTTAGATTGTACTATTCAACAACGG 57.245 33.333 0.00 0.00 38.35 4.44
2880 2889 1.210478 ACGGGTGCTAATTGCTCTCAT 59.790 47.619 0.00 0.00 43.37 2.90
3135 3146 5.220873 GGAACGAAGAAAGGGATTGCTATTC 60.221 44.000 0.00 0.00 0.00 1.75
3278 3289 1.035139 TATTTACCCGAGTCGCCTCC 58.965 55.000 7.12 0.00 33.93 4.30
3400 3572 3.437395 TGGGCAAATACACACGTGTTATC 59.563 43.478 20.79 8.50 41.83 1.75
3660 3832 1.470098 GGCATCGATTTGTCACAAGCT 59.530 47.619 0.00 0.00 0.00 3.74
3900 4112 3.421844 GGCTGGACCTTAGAAACACAAT 58.578 45.455 0.00 0.00 34.51 2.71
4061 4278 2.905075 TGTATTATGCAAGCGCTGTCT 58.095 42.857 12.58 0.00 39.64 3.41
4083 4300 8.096414 TGTCTATTTTTACTTTACTACCGGCTT 58.904 33.333 0.00 0.00 0.00 4.35
4084 4301 8.385858 GTCTATTTTTACTTTACTACCGGCTTG 58.614 37.037 0.00 0.00 0.00 4.01
4085 4302 5.361135 TTTTTACTTTACTACCGGCTTGC 57.639 39.130 0.00 0.00 0.00 4.01
4090 4469 3.260128 ACTTTACTACCGGCTTGCTACTT 59.740 43.478 0.00 0.00 0.00 2.24
4218 4597 2.025605 TGAAGAGGCGGTCTAGTAGGAA 60.026 50.000 0.00 0.00 32.65 3.36
4225 4604 3.455327 GCGGTCTAGTAGGAACCATTTC 58.545 50.000 8.38 0.00 0.00 2.17
4247 4626 2.763448 CCCTGGAGAATTCTCGTCTCTT 59.237 50.000 25.40 0.00 43.76 2.85
4329 4708 9.801873 ATCCTCGTTGATTGTAAATTAAATTGG 57.198 29.630 0.00 0.00 0.00 3.16
4399 4781 1.080434 GCTGACTGTCGGTCTGTCC 60.080 63.158 17.36 0.00 44.74 4.02
4411 4793 1.067071 GGTCTGTCCGGAAACTACAGG 60.067 57.143 17.45 0.00 40.46 4.00
4418 4800 0.179119 CGGAAACTACAGGCTACCCG 60.179 60.000 0.00 0.00 35.76 5.28
4430 4812 0.683504 GCTACCCGGTCTCAGAAGGA 60.684 60.000 0.00 0.00 0.00 3.36
4466 4848 8.996024 ACTGCAACACTTTATTTTGTTTACTT 57.004 26.923 0.00 0.00 33.59 2.24
4479 4875 8.980481 ATTTTGTTTACTTTCTTCTCTCCAGA 57.020 30.769 0.00 0.00 0.00 3.86
4530 4938 1.335882 TACACCCACGGTCACCACAA 61.336 55.000 0.00 0.00 31.02 3.33
4574 4996 8.786898 TCTGGATAAATTTTTGAGTTCTGTGAG 58.213 33.333 0.00 0.00 0.00 3.51
4620 5105 0.815095 CATGCCTGAATCAGCAGCAA 59.185 50.000 15.93 3.21 34.56 3.91
4622 5107 0.599558 TGCCTGAATCAGCAGCAAAC 59.400 50.000 10.92 0.00 34.56 2.93
4674 5159 5.484998 ACCTTGGAATTTGATAACATTGCCT 59.515 36.000 0.00 0.00 0.00 4.75
4717 5202 1.860950 CTTGGGTAATGACGATCGCAG 59.139 52.381 16.60 0.00 0.00 5.18
4721 5206 2.933906 GGGTAATGACGATCGCAGAAAA 59.066 45.455 16.60 0.00 43.58 2.29
4722 5207 3.372822 GGGTAATGACGATCGCAGAAAAA 59.627 43.478 16.60 0.00 43.58 1.94
4737 5222 5.563842 GCAGAAAAACGTATGAGATTCCTG 58.436 41.667 0.00 0.00 0.00 3.86
4782 5267 5.220228 CCACGATAACGATCAAACTCTCAAC 60.220 44.000 0.00 0.00 42.66 3.18
4787 5272 5.613358 AACGATCAAACTCTCAACATTCC 57.387 39.130 0.00 0.00 0.00 3.01
4791 5276 3.411446 TCAAACTCTCAACATTCCGCAT 58.589 40.909 0.00 0.00 0.00 4.73
4819 5306 1.079819 CCGGCACAAGATCGTGACT 60.080 57.895 15.90 0.00 43.19 3.41
4825 5312 2.092838 GCACAAGATCGTGACTAACAGC 59.907 50.000 15.90 4.08 39.34 4.40
4863 5350 7.807977 ACCTACATCCATATTTACAAGCAAG 57.192 36.000 0.00 0.00 0.00 4.01
4899 5386 5.837438 ACATCTCACTGTATCATCTCCATCA 59.163 40.000 0.00 0.00 0.00 3.07
4977 5464 8.535690 ACTACTATAGAAAACTGAGTTGCAAC 57.464 34.615 22.17 22.17 0.00 4.17
4978 5465 8.368668 ACTACTATAGAAAACTGAGTTGCAACT 58.631 33.333 31.57 31.57 43.16 3.16
4979 5466 9.209175 CTACTATAGAAAACTGAGTTGCAACTT 57.791 33.333 31.58 15.89 39.88 2.66
4980 5467 7.865707 ACTATAGAAAACTGAGTTGCAACTTG 58.134 34.615 31.58 26.69 39.88 3.16
4981 5468 3.774066 AGAAAACTGAGTTGCAACTTGC 58.226 40.909 31.58 20.52 45.29 4.01
5116 5603 0.674895 CAAGGTAGCAGAGCCCACAC 60.675 60.000 0.00 0.00 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.860326 GGAAAACAATGCATATGCCGC 59.140 47.619 24.54 0.44 41.18 6.53
1 2 3.441496 AGGAAAACAATGCATATGCCG 57.559 42.857 24.54 15.09 41.18 5.69
2 3 7.608308 TTTTAAGGAAAACAATGCATATGCC 57.392 32.000 24.54 7.65 33.07 4.40
12 13 8.590204 GGGGTCAAGATATTTTAAGGAAAACAA 58.410 33.333 0.00 0.00 37.37 2.83
13 14 7.094118 CGGGGTCAAGATATTTTAAGGAAAACA 60.094 37.037 0.00 0.00 37.37 2.83
14 15 7.255569 CGGGGTCAAGATATTTTAAGGAAAAC 58.744 38.462 0.00 0.00 37.37 2.43
15 16 6.127563 GCGGGGTCAAGATATTTTAAGGAAAA 60.128 38.462 0.00 0.00 38.87 2.29
16 17 5.358725 GCGGGGTCAAGATATTTTAAGGAAA 59.641 40.000 0.00 0.00 0.00 3.13
17 18 4.885325 GCGGGGTCAAGATATTTTAAGGAA 59.115 41.667 0.00 0.00 0.00 3.36
18 19 4.165372 AGCGGGGTCAAGATATTTTAAGGA 59.835 41.667 0.00 0.00 0.00 3.36
19 20 4.275936 CAGCGGGGTCAAGATATTTTAAGG 59.724 45.833 0.00 0.00 0.00 2.69
20 21 4.275936 CCAGCGGGGTCAAGATATTTTAAG 59.724 45.833 0.00 0.00 0.00 1.85
21 22 4.080243 TCCAGCGGGGTCAAGATATTTTAA 60.080 41.667 2.05 0.00 38.11 1.52
22 23 3.456644 TCCAGCGGGGTCAAGATATTTTA 59.543 43.478 2.05 0.00 38.11 1.52
23 24 2.241176 TCCAGCGGGGTCAAGATATTTT 59.759 45.455 2.05 0.00 38.11 1.82
24 25 1.843851 TCCAGCGGGGTCAAGATATTT 59.156 47.619 2.05 0.00 38.11 1.40
25 26 1.507140 TCCAGCGGGGTCAAGATATT 58.493 50.000 2.05 0.00 38.11 1.28
26 27 1.625818 GATCCAGCGGGGTCAAGATAT 59.374 52.381 11.70 0.00 44.32 1.63
27 28 1.048601 GATCCAGCGGGGTCAAGATA 58.951 55.000 11.70 0.00 44.32 1.98
28 29 1.700042 GGATCCAGCGGGGTCAAGAT 61.700 60.000 18.38 0.00 46.95 2.40
29 30 2.367202 GGATCCAGCGGGGTCAAGA 61.367 63.158 18.38 0.00 46.95 3.02
30 31 2.190578 GGATCCAGCGGGGTCAAG 59.809 66.667 18.38 0.00 46.95 3.02
31 32 3.407967 GGGATCCAGCGGGGTCAA 61.408 66.667 18.38 0.00 46.95 3.18
32 33 4.414956 AGGGATCCAGCGGGGTCA 62.415 66.667 18.38 0.00 46.95 4.02
33 34 2.658321 TAGAGGGATCCAGCGGGGTC 62.658 65.000 15.23 7.75 44.17 4.46
34 35 2.711899 TAGAGGGATCCAGCGGGGT 61.712 63.158 15.23 0.00 38.11 4.95
35 36 2.201490 TAGAGGGATCCAGCGGGG 59.799 66.667 15.23 0.00 38.37 5.73
36 37 1.457643 TGTAGAGGGATCCAGCGGG 60.458 63.158 15.23 0.00 0.00 6.13
37 38 1.043116 TGTGTAGAGGGATCCAGCGG 61.043 60.000 15.23 0.00 0.00 5.52
38 39 0.824109 TTGTGTAGAGGGATCCAGCG 59.176 55.000 15.23 0.00 0.00 5.18
39 40 3.567478 AATTGTGTAGAGGGATCCAGC 57.433 47.619 15.23 4.38 0.00 4.85
40 41 6.712547 GGATAAAATTGTGTAGAGGGATCCAG 59.287 42.308 15.23 0.00 31.39 3.86
41 42 6.389869 AGGATAAAATTGTGTAGAGGGATCCA 59.610 38.462 15.23 0.00 33.11 3.41
42 43 6.712547 CAGGATAAAATTGTGTAGAGGGATCC 59.287 42.308 1.92 1.92 0.00 3.36
43 44 7.283329 ACAGGATAAAATTGTGTAGAGGGATC 58.717 38.462 0.00 0.00 0.00 3.36
44 45 7.092444 TGACAGGATAAAATTGTGTAGAGGGAT 60.092 37.037 0.00 0.00 0.00 3.85
45 46 6.214615 TGACAGGATAAAATTGTGTAGAGGGA 59.785 38.462 0.00 0.00 0.00 4.20
46 47 6.414732 TGACAGGATAAAATTGTGTAGAGGG 58.585 40.000 0.00 0.00 0.00 4.30
47 48 7.554118 ACATGACAGGATAAAATTGTGTAGAGG 59.446 37.037 0.00 0.00 0.00 3.69
48 49 8.498054 ACATGACAGGATAAAATTGTGTAGAG 57.502 34.615 0.00 0.00 0.00 2.43
49 50 8.100164 TGACATGACAGGATAAAATTGTGTAGA 58.900 33.333 0.00 0.00 0.00 2.59
50 51 8.267620 TGACATGACAGGATAAAATTGTGTAG 57.732 34.615 0.00 0.00 0.00 2.74
51 52 8.676401 CATGACATGACAGGATAAAATTGTGTA 58.324 33.333 10.03 0.00 0.00 2.90
52 53 7.541162 CATGACATGACAGGATAAAATTGTGT 58.459 34.615 10.03 0.00 0.00 3.72
53 54 6.474427 GCATGACATGACAGGATAAAATTGTG 59.526 38.462 19.76 0.00 0.00 3.33
54 55 6.379133 AGCATGACATGACAGGATAAAATTGT 59.621 34.615 19.76 0.00 0.00 2.71
55 56 6.802608 AGCATGACATGACAGGATAAAATTG 58.197 36.000 19.76 0.22 0.00 2.32
56 57 6.832384 AGAGCATGACATGACAGGATAAAATT 59.168 34.615 19.76 0.00 0.00 1.82
57 58 6.363065 AGAGCATGACATGACAGGATAAAAT 58.637 36.000 19.76 0.00 0.00 1.82
58 59 5.748402 AGAGCATGACATGACAGGATAAAA 58.252 37.500 19.76 0.00 0.00 1.52
59 60 5.363101 GAGAGCATGACATGACAGGATAAA 58.637 41.667 19.76 0.00 0.00 1.40
60 61 4.202295 GGAGAGCATGACATGACAGGATAA 60.202 45.833 19.76 0.00 0.00 1.75
61 62 3.323115 GGAGAGCATGACATGACAGGATA 59.677 47.826 19.76 0.00 0.00 2.59
62 63 2.104451 GGAGAGCATGACATGACAGGAT 59.896 50.000 19.76 7.18 0.00 3.24
63 64 1.483827 GGAGAGCATGACATGACAGGA 59.516 52.381 19.76 0.00 0.00 3.86
64 65 1.208776 TGGAGAGCATGACATGACAGG 59.791 52.381 19.76 5.46 0.00 4.00
65 66 2.685850 TGGAGAGCATGACATGACAG 57.314 50.000 19.76 0.00 0.00 3.51
66 67 2.237893 ACATGGAGAGCATGACATGACA 59.762 45.455 19.76 0.00 42.39 3.58
67 68 2.915349 ACATGGAGAGCATGACATGAC 58.085 47.619 19.76 11.55 42.39 3.06
68 69 3.181462 GGTACATGGAGAGCATGACATGA 60.181 47.826 19.76 0.00 42.39 3.07
69 70 3.136763 GGTACATGGAGAGCATGACATG 58.863 50.000 11.27 11.27 44.61 3.21
70 71 3.044156 AGGTACATGGAGAGCATGACAT 58.956 45.455 0.00 0.00 34.39 3.06
71 72 2.169144 CAGGTACATGGAGAGCATGACA 59.831 50.000 0.00 0.00 34.39 3.58
72 73 2.484417 CCAGGTACATGGAGAGCATGAC 60.484 54.545 22.01 0.00 43.57 3.06
73 74 1.764723 CCAGGTACATGGAGAGCATGA 59.235 52.381 22.01 0.00 43.57 3.07
74 75 1.764723 TCCAGGTACATGGAGAGCATG 59.235 52.381 24.83 0.00 44.56 4.06
75 76 2.180946 TCCAGGTACATGGAGAGCAT 57.819 50.000 24.83 0.00 44.56 3.79
76 77 3.709834 TCCAGGTACATGGAGAGCA 57.290 52.632 24.83 2.74 44.56 4.26
82 83 0.625849 AAGGGCTTCCAGGTACATGG 59.374 55.000 20.57 20.57 42.11 3.66
83 84 2.514458 AAAGGGCTTCCAGGTACATG 57.486 50.000 0.00 0.00 0.00 3.21
84 85 3.542969 AAAAAGGGCTTCCAGGTACAT 57.457 42.857 0.00 0.00 0.00 2.29
101 102 7.208777 TGCAAGTGAGATTTATTGCTGAAAAA 58.791 30.769 9.80 0.00 46.33 1.94
102 103 6.747125 TGCAAGTGAGATTTATTGCTGAAAA 58.253 32.000 9.80 0.00 46.33 2.29
103 104 6.330004 TGCAAGTGAGATTTATTGCTGAAA 57.670 33.333 9.80 0.00 46.33 2.69
104 105 5.963176 TGCAAGTGAGATTTATTGCTGAA 57.037 34.783 9.80 0.00 46.33 3.02
105 106 5.677852 GCATGCAAGTGAGATTTATTGCTGA 60.678 40.000 14.21 0.00 46.33 4.26
106 107 4.503007 GCATGCAAGTGAGATTTATTGCTG 59.497 41.667 14.21 6.96 46.33 4.41
107 108 4.401519 AGCATGCAAGTGAGATTTATTGCT 59.598 37.500 21.98 0.00 46.33 3.91
108 109 4.679662 AGCATGCAAGTGAGATTTATTGC 58.320 39.130 21.98 1.96 46.36 3.56
109 110 7.853377 CATAGCATGCAAGTGAGATTTATTG 57.147 36.000 21.98 0.00 0.00 1.90
125 126 1.012086 AAGCACGTGAGCATAGCATG 58.988 50.000 22.23 0.00 36.85 4.06
126 127 1.012086 CAAGCACGTGAGCATAGCAT 58.988 50.000 22.23 0.00 36.85 3.79
127 128 0.037419 TCAAGCACGTGAGCATAGCA 60.037 50.000 22.23 0.00 36.85 3.49
128 129 1.078709 TTCAAGCACGTGAGCATAGC 58.921 50.000 22.23 0.76 36.85 2.97
129 130 2.068519 TGTTCAAGCACGTGAGCATAG 58.931 47.619 22.23 2.06 34.28 2.23
130 131 2.162319 TGTTCAAGCACGTGAGCATA 57.838 45.000 22.23 0.00 34.28 3.14
131 132 1.002468 GTTGTTCAAGCACGTGAGCAT 60.002 47.619 22.23 0.00 38.36 3.79
132 133 0.376852 GTTGTTCAAGCACGTGAGCA 59.623 50.000 22.23 3.25 37.01 4.26
133 134 0.657840 AGTTGTTCAAGCACGTGAGC 59.342 50.000 22.23 4.36 0.00 4.26
134 135 3.604772 GCTAAGTTGTTCAAGCACGTGAG 60.605 47.826 22.23 8.30 35.05 3.51
135 136 2.286833 GCTAAGTTGTTCAAGCACGTGA 59.713 45.455 22.23 0.00 35.05 4.35
136 137 2.287915 AGCTAAGTTGTTCAAGCACGTG 59.712 45.455 12.28 12.28 37.44 4.49
137 138 2.544267 GAGCTAAGTTGTTCAAGCACGT 59.456 45.455 0.00 0.00 37.44 4.49
138 139 2.096218 GGAGCTAAGTTGTTCAAGCACG 60.096 50.000 0.00 0.00 37.44 5.34
139 140 2.226674 GGGAGCTAAGTTGTTCAAGCAC 59.773 50.000 0.00 0.00 37.44 4.40
140 141 2.504367 GGGAGCTAAGTTGTTCAAGCA 58.496 47.619 0.00 0.00 37.44 3.91
141 142 1.813178 GGGGAGCTAAGTTGTTCAAGC 59.187 52.381 0.00 0.00 35.16 4.01
142 143 2.814336 GTGGGGAGCTAAGTTGTTCAAG 59.186 50.000 0.00 0.00 0.00 3.02
143 144 2.441750 AGTGGGGAGCTAAGTTGTTCAA 59.558 45.455 0.00 0.00 0.00 2.69
144 145 2.054799 AGTGGGGAGCTAAGTTGTTCA 58.945 47.619 0.00 0.00 0.00 3.18
145 146 2.861147 AGTGGGGAGCTAAGTTGTTC 57.139 50.000 0.00 0.00 0.00 3.18
146 147 3.622455 GCATAGTGGGGAGCTAAGTTGTT 60.622 47.826 0.00 0.00 0.00 2.83
147 148 2.092914 GCATAGTGGGGAGCTAAGTTGT 60.093 50.000 0.00 0.00 0.00 3.32
148 149 2.565841 GCATAGTGGGGAGCTAAGTTG 58.434 52.381 0.00 0.00 0.00 3.16
149 150 1.490910 GGCATAGTGGGGAGCTAAGTT 59.509 52.381 0.00 0.00 0.00 2.66
150 151 1.132500 GGCATAGTGGGGAGCTAAGT 58.868 55.000 0.00 0.00 0.00 2.24
151 152 1.071385 CAGGCATAGTGGGGAGCTAAG 59.929 57.143 0.00 0.00 0.00 2.18
152 153 1.131638 CAGGCATAGTGGGGAGCTAA 58.868 55.000 0.00 0.00 0.00 3.09
153 154 1.410850 GCAGGCATAGTGGGGAGCTA 61.411 60.000 0.00 0.00 0.00 3.32
154 155 2.750657 GCAGGCATAGTGGGGAGCT 61.751 63.158 0.00 0.00 0.00 4.09
155 156 2.203266 GCAGGCATAGTGGGGAGC 60.203 66.667 0.00 0.00 0.00 4.70
156 157 2.109799 CGCAGGCATAGTGGGGAG 59.890 66.667 0.00 0.00 0.00 4.30
157 158 4.175337 GCGCAGGCATAGTGGGGA 62.175 66.667 0.30 0.00 39.62 4.81
163 164 4.285149 GAACGCGCGCAGGCATAG 62.285 66.667 32.58 15.32 39.92 2.23
174 175 2.094539 CATGACACTGCGAACGCG 59.905 61.111 3.53 3.53 45.51 6.01
175 176 2.202222 GCATGACACTGCGAACGC 60.202 61.111 12.33 12.33 42.35 4.84
176 177 1.154599 GTGCATGACACTGCGAACG 60.155 57.895 11.51 0.00 46.41 3.95
177 178 4.826600 GTGCATGACACTGCGAAC 57.173 55.556 11.51 0.00 46.41 3.95
184 185 4.107051 GCCAGGCGTGCATGACAC 62.107 66.667 15.74 3.38 46.45 3.67
229 230 3.730761 GGTTGCTGTGCTGGAGCG 61.731 66.667 0.00 0.00 45.83 5.03
230 231 3.368571 GGGTTGCTGTGCTGGAGC 61.369 66.667 0.00 0.00 42.50 4.70
231 232 3.052082 CGGGTTGCTGTGCTGGAG 61.052 66.667 0.00 0.00 0.00 3.86
237 238 3.583276 TACGAGGCGGGTTGCTGTG 62.583 63.158 0.00 0.00 45.43 3.66
238 239 3.296709 CTACGAGGCGGGTTGCTGT 62.297 63.158 0.00 0.00 45.43 4.40
239 240 2.509336 CTACGAGGCGGGTTGCTG 60.509 66.667 0.00 0.00 45.43 4.41
240 241 4.452733 GCTACGAGGCGGGTTGCT 62.453 66.667 9.30 0.00 45.43 3.91
241 242 4.752879 TGCTACGAGGCGGGTTGC 62.753 66.667 9.55 9.55 45.38 4.17
242 243 2.813908 GTGCTACGAGGCGGGTTG 60.814 66.667 0.00 0.00 34.52 3.77
243 244 2.995574 AGTGCTACGAGGCGGGTT 60.996 61.111 0.00 0.00 34.52 4.11
244 245 3.450115 GAGTGCTACGAGGCGGGT 61.450 66.667 0.00 0.00 34.52 5.28
245 246 2.501223 TTTGAGTGCTACGAGGCGGG 62.501 60.000 0.00 0.00 34.52 6.13
246 247 1.080093 TTTGAGTGCTACGAGGCGG 60.080 57.895 0.00 0.00 34.52 6.13
247 248 0.666274 TGTTTGAGTGCTACGAGGCG 60.666 55.000 0.00 0.00 34.52 5.52
248 249 1.726853 ATGTTTGAGTGCTACGAGGC 58.273 50.000 0.00 0.00 0.00 4.70
249 250 4.682787 TCATATGTTTGAGTGCTACGAGG 58.317 43.478 1.90 0.00 0.00 4.63
250 251 6.647212 TTTCATATGTTTGAGTGCTACGAG 57.353 37.500 1.90 0.00 0.00 4.18
251 252 7.428282 TTTTTCATATGTTTGAGTGCTACGA 57.572 32.000 1.90 0.00 0.00 3.43
272 273 0.525761 ACGCGGCATGCACTATTTTT 59.474 45.000 21.36 0.00 46.97 1.94
273 274 0.179166 CACGCGGCATGCACTATTTT 60.179 50.000 21.36 0.00 46.97 1.82
274 275 1.429021 CACGCGGCATGCACTATTT 59.571 52.632 21.36 0.00 46.97 1.40
275 276 2.472059 CCACGCGGCATGCACTATT 61.472 57.895 21.36 0.00 46.97 1.73
276 277 2.896854 CCACGCGGCATGCACTAT 60.897 61.111 21.36 0.00 46.97 2.12
277 278 4.386951 ACCACGCGGCATGCACTA 62.387 61.111 21.36 0.00 46.97 2.74
289 290 4.624364 TGCAGCCACTCCACCACG 62.624 66.667 0.00 0.00 0.00 4.94
290 291 2.980233 GTGCAGCCACTCCACCAC 60.980 66.667 0.00 0.00 38.93 4.16
291 292 4.269523 GGTGCAGCCACTCCACCA 62.270 66.667 4.03 0.00 46.38 4.17
293 294 3.909086 GAGGGTGCAGCCACTCCAC 62.909 68.421 34.87 15.25 43.75 4.02
294 295 3.640407 GAGGGTGCAGCCACTCCA 61.640 66.667 34.87 0.00 43.75 3.86
295 296 4.416738 GGAGGGTGCAGCCACTCC 62.417 72.222 34.87 28.53 43.75 3.85
296 297 3.640407 TGGAGGGTGCAGCCACTC 61.640 66.667 34.87 24.14 43.01 3.51
297 298 3.958860 GTGGAGGGTGCAGCCACT 61.959 66.667 34.87 17.28 46.56 4.00
302 303 4.704833 CCCACGTGGAGGGTGCAG 62.705 72.222 36.07 12.56 41.61 4.41
308 309 1.672356 CTTTCAGCCCACGTGGAGG 60.672 63.158 36.07 22.71 37.39 4.30
309 310 2.328099 GCTTTCAGCCCACGTGGAG 61.328 63.158 36.07 24.97 34.48 3.86
310 311 1.476845 TAGCTTTCAGCCCACGTGGA 61.477 55.000 36.07 13.42 43.77 4.02
311 312 1.003839 TAGCTTTCAGCCCACGTGG 60.004 57.895 28.26 28.26 43.77 4.94
312 313 1.021390 CCTAGCTTTCAGCCCACGTG 61.021 60.000 9.08 9.08 43.77 4.49
313 314 1.296715 CCTAGCTTTCAGCCCACGT 59.703 57.895 0.00 0.00 43.77 4.49
314 315 2.109126 GCCTAGCTTTCAGCCCACG 61.109 63.158 0.00 0.00 43.77 4.94
315 316 1.750780 GGCCTAGCTTTCAGCCCAC 60.751 63.158 0.00 0.00 43.77 4.61
316 317 2.677228 GGCCTAGCTTTCAGCCCA 59.323 61.111 0.00 0.00 43.77 5.36
318 319 2.124109 GGGGCCTAGCTTTCAGCC 60.124 66.667 0.84 0.00 43.77 4.85
319 320 1.750780 GTGGGGCCTAGCTTTCAGC 60.751 63.158 0.84 0.00 42.84 4.26
320 321 1.450312 CGTGGGGCCTAGCTTTCAG 60.450 63.158 0.84 0.00 0.00 3.02
321 322 2.668632 CGTGGGGCCTAGCTTTCA 59.331 61.111 0.84 0.00 0.00 2.69
322 323 2.124695 CCGTGGGGCCTAGCTTTC 60.125 66.667 0.84 0.00 0.00 2.62
334 335 3.491598 AAACAGAGTGGGGCCGTGG 62.492 63.158 0.00 0.00 0.00 4.94
335 336 1.966451 GAAACAGAGTGGGGCCGTG 60.966 63.158 0.00 0.00 0.00 4.94
336 337 2.430367 GAAACAGAGTGGGGCCGT 59.570 61.111 0.00 0.00 0.00 5.68
337 338 2.742372 CGAAACAGAGTGGGGCCG 60.742 66.667 0.00 0.00 0.00 6.13
338 339 1.671379 GACGAAACAGAGTGGGGCC 60.671 63.158 0.00 0.00 0.00 5.80
339 340 2.027625 CGACGAAACAGAGTGGGGC 61.028 63.158 0.00 0.00 0.00 5.80
340 341 2.027625 GCGACGAAACAGAGTGGGG 61.028 63.158 0.00 0.00 0.00 4.96
341 342 2.372690 CGCGACGAAACAGAGTGGG 61.373 63.158 0.00 0.00 0.00 4.61
342 343 2.372690 CCGCGACGAAACAGAGTGG 61.373 63.158 8.23 0.00 0.00 4.00
343 344 3.000080 GCCGCGACGAAACAGAGTG 62.000 63.158 8.23 0.00 0.00 3.51
344 345 2.733593 GCCGCGACGAAACAGAGT 60.734 61.111 8.23 0.00 0.00 3.24
345 346 2.430921 AGCCGCGACGAAACAGAG 60.431 61.111 8.23 0.00 0.00 3.35
346 347 2.430244 GAGCCGCGACGAAACAGA 60.430 61.111 8.23 0.00 0.00 3.41
347 348 2.733218 TGAGCCGCGACGAAACAG 60.733 61.111 8.23 0.00 0.00 3.16
348 349 3.033764 GTGAGCCGCGACGAAACA 61.034 61.111 8.23 0.00 0.00 2.83
349 350 3.000080 CTGTGAGCCGCGACGAAAC 62.000 63.158 8.23 0.00 0.00 2.78
350 351 2.733218 CTGTGAGCCGCGACGAAA 60.733 61.111 8.23 0.00 0.00 3.46
353 354 4.476410 TAGCTGTGAGCCGCGACG 62.476 66.667 8.23 0.00 43.77 5.12
354 355 2.580867 CTAGCTGTGAGCCGCGAC 60.581 66.667 8.23 0.00 43.77 5.19
355 356 4.498520 GCTAGCTGTGAGCCGCGA 62.499 66.667 8.23 0.00 43.77 5.87
357 358 4.803426 ACGCTAGCTGTGAGCCGC 62.803 66.667 13.93 0.00 43.77 6.53
358 359 1.715862 TAGACGCTAGCTGTGAGCCG 61.716 60.000 13.93 0.00 43.77 5.52
359 360 0.671251 ATAGACGCTAGCTGTGAGCC 59.329 55.000 13.93 1.19 43.77 4.70
360 361 2.500509 AATAGACGCTAGCTGTGAGC 57.499 50.000 13.93 0.00 42.84 4.26
361 362 4.041049 CAGAAATAGACGCTAGCTGTGAG 58.959 47.826 13.93 0.00 0.00 3.51
362 363 3.444034 ACAGAAATAGACGCTAGCTGTGA 59.556 43.478 13.93 3.66 34.22 3.58
363 364 3.775202 ACAGAAATAGACGCTAGCTGTG 58.225 45.455 13.93 3.33 34.22 3.66
364 365 4.457834 AACAGAAATAGACGCTAGCTGT 57.542 40.909 13.93 12.37 36.76 4.40
365 366 4.864806 TGAAACAGAAATAGACGCTAGCTG 59.135 41.667 13.93 9.03 0.00 4.24
366 367 4.865365 GTGAAACAGAAATAGACGCTAGCT 59.135 41.667 13.93 0.00 36.32 3.32
367 368 4.259451 CGTGAAACAGAAATAGACGCTAGC 60.259 45.833 4.06 4.06 35.74 3.42
368 369 4.265556 CCGTGAAACAGAAATAGACGCTAG 59.734 45.833 0.00 0.00 35.74 3.42
369 370 4.171005 CCGTGAAACAGAAATAGACGCTA 58.829 43.478 0.00 0.00 35.74 4.26
370 371 2.993899 CCGTGAAACAGAAATAGACGCT 59.006 45.455 0.00 0.00 35.74 5.07
371 372 2.474032 GCCGTGAAACAGAAATAGACGC 60.474 50.000 0.00 0.00 35.74 5.19
372 373 2.734606 TGCCGTGAAACAGAAATAGACG 59.265 45.455 0.00 0.00 35.74 4.18
373 374 3.120304 GGTGCCGTGAAACAGAAATAGAC 60.120 47.826 0.00 0.00 35.74 2.59
374 375 3.071479 GGTGCCGTGAAACAGAAATAGA 58.929 45.455 0.00 0.00 35.74 1.98
375 376 3.074412 AGGTGCCGTGAAACAGAAATAG 58.926 45.455 0.00 0.00 35.74 1.73
376 377 2.811431 CAGGTGCCGTGAAACAGAAATA 59.189 45.455 0.00 0.00 35.74 1.40
377 378 1.608590 CAGGTGCCGTGAAACAGAAAT 59.391 47.619 0.00 0.00 35.74 2.17
378 379 1.021202 CAGGTGCCGTGAAACAGAAA 58.979 50.000 0.00 0.00 35.74 2.52
379 380 1.444119 GCAGGTGCCGTGAAACAGAA 61.444 55.000 0.00 0.00 35.74 3.02
380 381 1.891919 GCAGGTGCCGTGAAACAGA 60.892 57.895 0.00 0.00 35.74 3.41
381 382 2.639286 GCAGGTGCCGTGAAACAG 59.361 61.111 0.00 0.00 35.74 3.16
408 409 4.883354 GGAAGGCGGCATCCCCTG 62.883 72.222 21.58 0.00 0.00 4.45
412 413 2.908940 CATGGGAAGGCGGCATCC 60.909 66.667 23.74 23.74 34.85 3.51
413 414 2.124151 ACATGGGAAGGCGGCATC 60.124 61.111 13.08 9.11 0.00 3.91
414 415 2.440796 CACATGGGAAGGCGGCAT 60.441 61.111 13.08 0.00 0.00 4.40
415 416 4.738998 CCACATGGGAAGGCGGCA 62.739 66.667 13.08 0.00 40.01 5.69
420 421 4.738998 TGCCGCCACATGGGAAGG 62.739 66.667 0.00 0.00 40.01 3.46
421 422 3.136123 CTGCCGCCACATGGGAAG 61.136 66.667 0.00 0.00 40.01 3.46
422 423 4.738998 CCTGCCGCCACATGGGAA 62.739 66.667 0.00 0.00 40.01 3.97
468 469 2.397413 AAAGACCAGCTGGGACGTGG 62.397 60.000 35.42 11.19 41.15 4.94
469 470 0.535102 AAAAGACCAGCTGGGACGTG 60.535 55.000 35.42 10.80 41.15 4.49
470 471 0.182775 AAAAAGACCAGCTGGGACGT 59.817 50.000 35.42 23.09 41.15 4.34
471 472 3.021451 AAAAAGACCAGCTGGGACG 57.979 52.632 35.42 11.98 41.15 4.79
497 498 9.965824 GACAGAAAAGACCATTTTTAGATCAAA 57.034 29.630 0.00 0.00 30.78 2.69
498 499 9.130661 TGACAGAAAAGACCATTTTTAGATCAA 57.869 29.630 0.00 0.00 30.78 2.57
499 500 8.690203 TGACAGAAAAGACCATTTTTAGATCA 57.310 30.769 0.00 0.00 30.78 2.92
502 503 9.748708 CAAATGACAGAAAAGACCATTTTTAGA 57.251 29.630 0.00 0.00 35.88 2.10
503 504 8.490355 GCAAATGACAGAAAAGACCATTTTTAG 58.510 33.333 0.00 0.00 35.88 1.85
504 505 7.984050 TGCAAATGACAGAAAAGACCATTTTTA 59.016 29.630 0.00 0.00 35.88 1.52
505 506 6.822676 TGCAAATGACAGAAAAGACCATTTTT 59.177 30.769 0.00 0.00 35.88 1.94
506 507 6.347696 TGCAAATGACAGAAAAGACCATTTT 58.652 32.000 0.00 0.00 35.88 1.82
507 508 5.916318 TGCAAATGACAGAAAAGACCATTT 58.084 33.333 0.00 0.00 37.77 2.32
508 509 5.534207 TGCAAATGACAGAAAAGACCATT 57.466 34.783 0.00 0.00 0.00 3.16
509 510 5.733620 ATGCAAATGACAGAAAAGACCAT 57.266 34.783 0.00 0.00 0.00 3.55
510 511 5.068855 TCAATGCAAATGACAGAAAAGACCA 59.931 36.000 0.00 0.00 0.00 4.02
511 512 5.531634 TCAATGCAAATGACAGAAAAGACC 58.468 37.500 0.00 0.00 0.00 3.85
512 513 5.118203 GCTCAATGCAAATGACAGAAAAGAC 59.882 40.000 0.00 0.00 42.31 3.01
513 514 5.224888 GCTCAATGCAAATGACAGAAAAGA 58.775 37.500 0.00 0.00 42.31 2.52
514 515 5.511088 GCTCAATGCAAATGACAGAAAAG 57.489 39.130 0.00 0.00 42.31 2.27
528 529 1.251251 AAAGACCACCTGCTCAATGC 58.749 50.000 0.00 0.00 43.25 3.56
529 530 3.318839 TCAAAAAGACCACCTGCTCAATG 59.681 43.478 0.00 0.00 0.00 2.82
530 531 3.565307 TCAAAAAGACCACCTGCTCAAT 58.435 40.909 0.00 0.00 0.00 2.57
531 532 3.011566 TCAAAAAGACCACCTGCTCAA 57.988 42.857 0.00 0.00 0.00 3.02
532 533 2.687935 GTTCAAAAAGACCACCTGCTCA 59.312 45.455 0.00 0.00 0.00 4.26
533 534 2.687935 TGTTCAAAAAGACCACCTGCTC 59.312 45.455 0.00 0.00 0.00 4.26
534 535 2.733956 TGTTCAAAAAGACCACCTGCT 58.266 42.857 0.00 0.00 0.00 4.24
535 536 3.518634 TTGTTCAAAAAGACCACCTGC 57.481 42.857 0.00 0.00 0.00 4.85
555 556 3.138884 AGGGGCATTTTTGCGATTTTT 57.861 38.095 0.00 0.00 35.24 1.94
556 557 2.857186 AGGGGCATTTTTGCGATTTT 57.143 40.000 0.00 0.00 35.24 1.82
557 558 2.564947 TGTAGGGGCATTTTTGCGATTT 59.435 40.909 0.00 0.00 35.24 2.17
561 562 1.272212 ACTTGTAGGGGCATTTTTGCG 59.728 47.619 0.00 0.00 35.24 4.85
590 591 4.681744 TCAGTCAAAATTGCAAGGAACAC 58.318 39.130 4.94 0.00 0.00 3.32
591 592 4.644234 TCTCAGTCAAAATTGCAAGGAACA 59.356 37.500 4.94 0.00 0.00 3.18
592 593 5.186996 TCTCAGTCAAAATTGCAAGGAAC 57.813 39.130 4.94 0.00 0.00 3.62
593 594 5.850557 TTCTCAGTCAAAATTGCAAGGAA 57.149 34.783 4.94 0.00 0.00 3.36
594 595 5.850557 TTTCTCAGTCAAAATTGCAAGGA 57.149 34.783 4.94 0.00 0.00 3.36
681 683 2.192861 CGAAGCCAAACTGCCACCA 61.193 57.895 0.00 0.00 0.00 4.17
749 751 4.590918 TCCACTGAAGTAGAGGAGTAGTG 58.409 47.826 0.00 0.00 40.67 2.74
764 766 2.381752 TCTTCACTCCACTCCACTGA 57.618 50.000 0.00 0.00 0.00 3.41
771 773 6.436027 TGTTAGGATAGATCTTCACTCCACT 58.564 40.000 0.00 0.00 0.00 4.00
828 830 2.325583 TTACGCAATCCAAGCTAGGG 57.674 50.000 0.00 0.00 0.00 3.53
1012 1016 0.401738 CCGGCAGGATGGGATTGTAT 59.598 55.000 0.00 0.00 41.02 2.29
1083 1087 9.862371 GAAGAAAACTGACTTATATCACTGAGA 57.138 33.333 0.00 0.00 0.00 3.27
1131 1135 6.703165 CCAGATTCATTGATACGAGTTCATCA 59.297 38.462 0.00 0.00 0.00 3.07
1223 1227 4.332543 TTGGACCTCGGGGAGCCT 62.333 66.667 9.33 0.00 36.25 4.58
1253 1257 2.874019 CAGCGACGTCTCTGCTCT 59.126 61.111 21.45 2.59 36.69 4.09
1329 1333 9.588096 GGGGGTAATATCACAGAAAGAATAATT 57.412 33.333 0.00 0.00 0.00 1.40
1694 1698 3.303395 GCCACGCTTCTGTAATGAATAGC 60.303 47.826 0.00 0.00 0.00 2.97
1813 1817 2.584965 TGAAATGAATAGGGGAGGCCAA 59.415 45.455 5.01 0.00 0.00 4.52
1846 1850 3.567164 ACTGTCATGGCATAGCAAATAGC 59.433 43.478 0.00 0.00 46.19 2.97
1847 1851 4.818005 TGACTGTCATGGCATAGCAAATAG 59.182 41.667 6.36 0.00 0.00 1.73
1848 1852 4.779696 TGACTGTCATGGCATAGCAAATA 58.220 39.130 6.36 0.00 0.00 1.40
1990 1994 8.684386 TGAATGTGTACTGGAAAGTAAATTCA 57.316 30.769 11.80 11.80 33.45 2.57
2090 2094 2.620585 GGCTGCATAGGATTTTGGAGTC 59.379 50.000 0.50 0.00 34.19 3.36
2180 2184 5.584251 ACAAAATTCAAAAGATTTGCGGTGT 59.416 32.000 0.00 0.00 36.48 4.16
2476 2482 7.416817 CAATTATTGACTGCGTGGAAATGATA 58.583 34.615 0.00 0.00 0.00 2.15
2703 2712 1.538950 CAGAAAGTTTCCAGCAGAGCC 59.461 52.381 12.05 0.00 0.00 4.70
2714 2723 3.319122 GGATGCTGTTGTCCAGAAAGTTT 59.681 43.478 0.00 0.00 44.49 2.66
2771 2780 6.429521 TTTAACTTGGCTGGTTCTACTACT 57.570 37.500 0.00 0.00 0.00 2.57
3154 3165 7.917505 ACAAGTTGAGAAATCTTTTGCAGTTAG 59.082 33.333 10.54 0.00 0.00 2.34
3208 3219 4.563374 CCATCATACACACACTGGAGTTCA 60.563 45.833 0.00 0.00 0.00 3.18
3252 3263 4.992951 GGCGACTCGGGTAAATATTTATGT 59.007 41.667 11.00 6.01 0.00 2.29
3278 3289 1.024271 CACCTTGTATTGGGGCATCG 58.976 55.000 0.00 0.00 0.00 3.84
3409 3581 8.682936 ACATATGGAATCACTTCTTATGAACC 57.317 34.615 7.80 0.00 34.74 3.62
3436 3608 5.833131 TCCTCAAGGTTAACAAAAAGATGCT 59.167 36.000 8.10 0.00 36.34 3.79
3793 4004 3.950395 GGCTGCTAATCATGACTCCTTTT 59.050 43.478 0.00 0.00 0.00 2.27
3810 4021 3.304726 GGTTGAGAACAAAGTTAGGCTGC 60.305 47.826 0.00 0.00 37.77 5.25
3938 4150 8.086851 TCCGTTTTACAAAAACATACTAGGTC 57.913 34.615 13.83 0.00 0.00 3.85
4029 4241 6.694411 GCTTGCATAATACAAGTCCTTCAATG 59.306 38.462 5.50 0.00 45.09 2.82
4044 4261 5.505173 AAAATAGACAGCGCTTGCATAAT 57.495 34.783 7.50 0.00 42.66 1.28
4061 4278 6.880529 AGCAAGCCGGTAGTAAAGTAAAAATA 59.119 34.615 1.90 0.00 0.00 1.40
4084 4301 6.934048 AAGAAATAAGATCAGGCAAGTAGC 57.066 37.500 0.00 0.00 44.65 3.58
4090 4469 7.838696 TCCCATTTAAAGAAATAAGATCAGGCA 59.161 33.333 0.00 0.00 33.33 4.75
4143 4522 1.678101 GCCCAGTACCTTGCATGATTC 59.322 52.381 0.00 0.00 0.00 2.52
4218 4597 2.929043 AGAATTCTCCAGGGGAAATGGT 59.071 45.455 5.64 0.00 39.01 3.55
4225 4604 1.410882 GAGACGAGAATTCTCCAGGGG 59.589 57.143 26.08 15.70 39.79 4.79
4399 4781 0.179119 CGGGTAGCCTGTAGTTTCCG 60.179 60.000 9.73 0.00 0.00 4.30
4411 4793 0.683504 TCCTTCTGAGACCGGGTAGC 60.684 60.000 6.32 0.00 0.00 3.58
4418 4800 6.096987 AGTTTTTCCTTTTTCCTTCTGAGACC 59.903 38.462 0.00 0.00 0.00 3.85
4430 4812 6.875948 AAAGTGTTGCAGTTTTTCCTTTTT 57.124 29.167 0.00 0.00 33.83 1.94
4472 4868 0.908910 AGAGCTCTCGTCTCTGGAGA 59.091 55.000 11.45 0.00 39.29 3.71
4479 4875 1.480137 CATGGGAAAGAGCTCTCGTCT 59.520 52.381 18.55 0.00 34.09 4.18
4557 4965 6.212888 ACAAAGCTCACAGAACTCAAAAAT 57.787 33.333 0.00 0.00 0.00 1.82
4561 4969 3.206150 GGACAAAGCTCACAGAACTCAA 58.794 45.455 0.00 0.00 0.00 3.02
4562 4970 2.170397 TGGACAAAGCTCACAGAACTCA 59.830 45.455 0.00 0.00 0.00 3.41
4574 4996 5.563842 CAGAATCTATCGTTTGGACAAAGC 58.436 41.667 0.00 0.00 0.00 3.51
4674 5159 1.271543 CCTTGGTCTGGTGCTGATTCA 60.272 52.381 0.00 0.00 0.00 2.57
4717 5202 7.413109 GGTTCTCAGGAATCTCATACGTTTTTC 60.413 40.741 0.00 0.00 33.71 2.29
4721 5206 4.466370 TGGTTCTCAGGAATCTCATACGTT 59.534 41.667 0.00 0.00 33.95 3.99
4722 5207 4.023980 TGGTTCTCAGGAATCTCATACGT 58.976 43.478 0.00 0.00 33.95 3.57
4737 5222 3.939592 GGTTGTAATAGCCTGTGGTTCTC 59.060 47.826 0.00 0.00 0.00 2.87
4782 5267 1.676006 GGTTTGGTAGGATGCGGAATG 59.324 52.381 0.00 0.00 0.00 2.67
4787 5272 2.469516 GCCGGTTTGGTAGGATGCG 61.470 63.158 1.90 0.00 41.21 4.73
4791 5276 0.250553 CTTGTGCCGGTTTGGTAGGA 60.251 55.000 1.90 0.00 41.21 2.94
4819 5306 3.756434 GGTTTAGTTGCCATCAGCTGTTA 59.244 43.478 14.67 0.00 44.23 2.41
4825 5312 4.576463 GGATGTAGGTTTAGTTGCCATCAG 59.424 45.833 0.00 0.00 31.21 2.90
4863 5350 0.741326 TGAGATGTCGCAGAGGTAGC 59.259 55.000 0.00 0.00 36.95 3.58
4899 5386 1.080025 GCGAAGAGGCCGTGTTACT 60.080 57.895 0.00 0.00 0.00 2.24
4977 5464 0.251519 AAGGCCCTTCTCCTTGCAAG 60.252 55.000 19.93 19.93 42.03 4.01
4978 5465 0.251341 GAAGGCCCTTCTCCTTGCAA 60.251 55.000 16.46 0.00 43.54 4.08
4979 5466 1.380302 GAAGGCCCTTCTCCTTGCA 59.620 57.895 16.46 0.00 43.54 4.08
4980 5467 0.679321 CTGAAGGCCCTTCTCCTTGC 60.679 60.000 23.46 0.00 43.54 4.01
4981 5468 0.679321 GCTGAAGGCCCTTCTCCTTG 60.679 60.000 23.46 9.99 43.54 3.61
4982 5469 0.844221 AGCTGAAGGCCCTTCTCCTT 60.844 55.000 23.46 4.99 45.98 3.36
4983 5470 1.229788 AGCTGAAGGCCCTTCTCCT 60.230 57.895 23.46 15.95 40.73 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.