Multiple sequence alignment - TraesCS7B01G249800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G249800 chr7B 100.000 2486 0 0 1 2486 461212299 461209814 0.000000e+00 4591.0
1 TraesCS7B01G249800 chr7B 95.647 804 33 2 1684 2486 622461859 622462661 0.000000e+00 1290.0
2 TraesCS7B01G249800 chr7B 86.177 586 70 9 990 1574 622460988 622461563 7.550000e-175 623.0
3 TraesCS7B01G249800 chr7B 94.444 126 7 0 995 1120 461211269 461211144 7.020000e-46 195.0
4 TraesCS7B01G249800 chr7B 94.444 126 7 0 1031 1156 461211305 461211180 7.020000e-46 195.0
5 TraesCS7B01G249800 chr7B 94.643 56 3 0 1711 1766 622461811 622461866 1.220000e-13 87.9
6 TraesCS7B01G249800 chr4D 98.335 1862 20 3 626 2486 497998998 498000849 0.000000e+00 3256.0
7 TraesCS7B01G249800 chr4D 93.809 743 41 2 1744 2486 352496892 352497629 0.000000e+00 1112.0
8 TraesCS7B01G249800 chr4D 91.496 341 29 0 1157 1497 352487601 352487941 1.040000e-128 470.0
9 TraesCS7B01G249800 chr4D 96.748 123 4 0 1031 1153 497999367 497999489 3.240000e-49 206.0
10 TraesCS7B01G249800 chr4D 93.750 128 8 0 990 1117 497999398 497999525 2.520000e-45 193.0
11 TraesCS7B01G249800 chr4D 97.727 44 1 0 1559 1602 352487965 352488008 2.650000e-10 76.8
12 TraesCS7B01G249800 chr6D 98.331 1498 23 2 990 2486 87582113 87580617 0.000000e+00 2627.0
13 TraesCS7B01G249800 chr6D 96.947 524 15 1 634 1156 87582506 87581983 0.000000e+00 878.0
14 TraesCS7B01G249800 chr6D 92.701 137 6 3 1031 1167 87582144 87582012 7.020000e-46 195.0
15 TraesCS7B01G249800 chr6D 90.076 131 13 0 990 1120 87582077 87581947 1.180000e-38 171.0
16 TraesCS7B01G249800 chr6D 92.500 40 0 2 623 662 87579395 87579431 1.000000e-03 54.7
17 TraesCS7B01G249800 chr2D 96.263 776 28 1 1711 2486 177443026 177442252 0.000000e+00 1271.0
18 TraesCS7B01G249800 chr2D 83.708 712 75 26 997 1677 177443809 177443108 3.490000e-178 634.0
19 TraesCS7B01G249800 chr6A 94.907 805 39 2 1683 2486 480460904 480461707 0.000000e+00 1258.0
20 TraesCS7B01G249800 chr6A 99.390 328 2 0 634 961 117400837 117401164 1.650000e-166 595.0
21 TraesCS7B01G249800 chr6A 82.584 712 83 26 997 1677 480459994 480460695 7.660000e-165 590.0
22 TraesCS7B01G249800 chr7D 94.286 805 42 4 1683 2486 318859068 318859869 0.000000e+00 1229.0
23 TraesCS7B01G249800 chr7D 92.031 640 12 14 4 636 444354181 444353574 0.000000e+00 863.0
24 TraesCS7B01G249800 chr7D 86.034 580 68 6 997 1574 318858165 318858733 5.880000e-171 610.0
25 TraesCS7B01G249800 chr7D 87.719 114 4 1 1553 1666 318858752 318858855 9.340000e-25 124.0
26 TraesCS7B01G249800 chr5D 90.935 695 50 10 1761 2446 268493302 268492612 0.000000e+00 922.0
27 TraesCS7B01G249800 chr1A 90.935 695 50 12 1761 2446 369353036 369352346 0.000000e+00 922.0
28 TraesCS7B01G249800 chr1D 90.504 695 53 12 1761 2446 90297210 90296520 0.000000e+00 905.0
29 TraesCS7B01G249800 chr4A 94.877 527 25 2 1683 2207 500091740 500092266 0.000000e+00 822.0
30 TraesCS7B01G249800 chr4A 87.884 586 60 9 990 1574 500090922 500091497 0.000000e+00 678.0
31 TraesCS7B01G249800 chr4A 88.288 111 3 4 1553 1663 500091516 500091616 9.340000e-25 124.0
32 TraesCS7B01G249800 chr6B 98.817 338 3 1 624 961 6474225 6473889 3.540000e-168 601.0
33 TraesCS7B01G249800 chr6B 97.143 35 0 1 628 662 6472002 6472035 9.600000e-05 58.4
34 TraesCS7B01G249800 chr1B 99.392 329 2 0 633 961 22114929 22115257 4.580000e-167 597.0
35 TraesCS7B01G249800 chr7A 99.390 328 2 0 634 961 611911852 611912179 1.650000e-166 595.0
36 TraesCS7B01G249800 chr7A 82.609 598 55 31 74 635 495540542 495539958 1.340000e-132 483.0
37 TraesCS7B01G249800 chr3B 98.792 331 3 1 631 961 662510583 662510912 2.750000e-164 588.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G249800 chr7B 461209814 461212299 2485 True 1660.333333 4591 96.296000 1 2486 3 chr7B.!!$R1 2485
1 TraesCS7B01G249800 chr7B 622460988 622462661 1673 False 666.966667 1290 92.155667 990 2486 3 chr7B.!!$F1 1496
2 TraesCS7B01G249800 chr4D 497998998 498000849 1851 False 1218.333333 3256 96.277667 626 2486 3 chr4D.!!$F3 1860
3 TraesCS7B01G249800 chr4D 352496892 352497629 737 False 1112.000000 1112 93.809000 1744 2486 1 chr4D.!!$F1 742
4 TraesCS7B01G249800 chr6D 87580617 87582506 1889 True 967.750000 2627 94.513750 634 2486 4 chr6D.!!$R1 1852
5 TraesCS7B01G249800 chr2D 177442252 177443809 1557 True 952.500000 1271 89.985500 997 2486 2 chr2D.!!$R1 1489
6 TraesCS7B01G249800 chr6A 480459994 480461707 1713 False 924.000000 1258 88.745500 997 2486 2 chr6A.!!$F2 1489
7 TraesCS7B01G249800 chr7D 444353574 444354181 607 True 863.000000 863 92.031000 4 636 1 chr7D.!!$R1 632
8 TraesCS7B01G249800 chr7D 318858165 318859869 1704 False 654.333333 1229 89.346333 997 2486 3 chr7D.!!$F1 1489
9 TraesCS7B01G249800 chr5D 268492612 268493302 690 True 922.000000 922 90.935000 1761 2446 1 chr5D.!!$R1 685
10 TraesCS7B01G249800 chr1A 369352346 369353036 690 True 922.000000 922 90.935000 1761 2446 1 chr1A.!!$R1 685
11 TraesCS7B01G249800 chr1D 90296520 90297210 690 True 905.000000 905 90.504000 1761 2446 1 chr1D.!!$R1 685
12 TraesCS7B01G249800 chr4A 500090922 500092266 1344 False 541.333333 822 90.349667 990 2207 3 chr4A.!!$F1 1217
13 TraesCS7B01G249800 chr7A 495539958 495540542 584 True 483.000000 483 82.609000 74 635 1 chr7A.!!$R1 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
437 450 0.030092 CCCCTTGGACTATCCCTCCA 60.03 60.0 0.0 0.0 35.03 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 2330 5.764686 TGAACTCAACATGATTTGTACTGCT 59.235 36.0 0.0 0.0 37.68 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 7.566760 TGGCTATATCAACTTTTACATGTGG 57.433 36.000 9.11 0.00 0.00 4.17
59 60 6.039270 TGGCTATATCAACTTTTACATGTGGC 59.961 38.462 9.11 0.00 0.00 5.01
60 61 6.263168 GGCTATATCAACTTTTACATGTGGCT 59.737 38.462 9.11 0.00 0.00 4.75
61 62 7.201821 GGCTATATCAACTTTTACATGTGGCTT 60.202 37.037 9.11 0.00 0.00 4.35
62 63 8.836413 GCTATATCAACTTTTACATGTGGCTTA 58.164 33.333 9.11 0.00 0.00 3.09
156 169 6.213600 AGTGACAAGGAGGTTAACATACATCT 59.786 38.462 5.11 0.00 0.00 2.90
176 189 1.901464 AATCCACCCCAACACGTGC 60.901 57.895 17.22 0.00 0.00 5.34
197 210 2.147958 TGTAACACATTTCCACTCCGC 58.852 47.619 0.00 0.00 0.00 5.54
198 211 2.147958 GTAACACATTTCCACTCCGCA 58.852 47.619 0.00 0.00 0.00 5.69
199 212 1.238439 AACACATTTCCACTCCGCAG 58.762 50.000 0.00 0.00 0.00 5.18
200 213 1.237285 ACACATTTCCACTCCGCAGC 61.237 55.000 0.00 0.00 0.00 5.25
201 214 1.073025 ACATTTCCACTCCGCAGCA 59.927 52.632 0.00 0.00 0.00 4.41
202 215 1.237285 ACATTTCCACTCCGCAGCAC 61.237 55.000 0.00 0.00 0.00 4.40
203 216 2.034879 ATTTCCACTCCGCAGCACG 61.035 57.895 0.00 0.00 43.15 5.34
214 227 4.680237 CAGCACGACGGCCTGGAA 62.680 66.667 0.00 0.00 0.00 3.53
215 228 4.681978 AGCACGACGGCCTGGAAC 62.682 66.667 0.00 0.00 0.00 3.62
227 240 3.717842 CTGGAACGGGAAGTCCAAA 57.282 52.632 0.00 0.00 37.91 3.28
228 241 2.200373 CTGGAACGGGAAGTCCAAAT 57.800 50.000 0.00 0.00 37.91 2.32
229 242 2.084546 CTGGAACGGGAAGTCCAAATC 58.915 52.381 0.00 0.00 37.91 2.17
230 243 1.084289 GGAACGGGAAGTCCAAATCG 58.916 55.000 0.00 0.00 37.91 3.34
231 244 1.338389 GGAACGGGAAGTCCAAATCGA 60.338 52.381 0.00 0.00 37.91 3.59
232 245 2.419667 GAACGGGAAGTCCAAATCGAA 58.580 47.619 0.00 0.00 37.91 3.71
233 246 2.781681 ACGGGAAGTCCAAATCGAAT 57.218 45.000 0.00 0.00 37.91 3.34
234 247 2.629051 ACGGGAAGTCCAAATCGAATC 58.371 47.619 0.00 0.00 37.91 2.52
235 248 2.236395 ACGGGAAGTCCAAATCGAATCT 59.764 45.455 0.00 0.00 37.91 2.40
236 249 3.449737 ACGGGAAGTCCAAATCGAATCTA 59.550 43.478 0.00 0.00 37.91 1.98
237 250 4.081309 ACGGGAAGTCCAAATCGAATCTAA 60.081 41.667 0.00 0.00 37.91 2.10
238 251 4.508124 CGGGAAGTCCAAATCGAATCTAAG 59.492 45.833 0.00 0.00 37.91 2.18
239 252 4.816925 GGGAAGTCCAAATCGAATCTAAGG 59.183 45.833 0.00 0.00 37.91 2.69
240 253 4.273724 GGAAGTCCAAATCGAATCTAAGGC 59.726 45.833 0.00 0.00 35.64 4.35
241 254 3.809905 AGTCCAAATCGAATCTAAGGCC 58.190 45.455 0.00 0.00 0.00 5.19
242 255 3.199946 AGTCCAAATCGAATCTAAGGCCA 59.800 43.478 5.01 0.00 0.00 5.36
243 256 3.945285 GTCCAAATCGAATCTAAGGCCAA 59.055 43.478 5.01 0.00 0.00 4.52
244 257 4.580580 GTCCAAATCGAATCTAAGGCCAAT 59.419 41.667 5.01 0.00 0.00 3.16
245 258 5.763204 GTCCAAATCGAATCTAAGGCCAATA 59.237 40.000 5.01 0.00 0.00 1.90
246 259 6.262273 GTCCAAATCGAATCTAAGGCCAATAA 59.738 38.462 5.01 0.00 0.00 1.40
247 260 6.486657 TCCAAATCGAATCTAAGGCCAATAAG 59.513 38.462 5.01 0.00 0.00 1.73
248 261 5.948992 AATCGAATCTAAGGCCAATAAGC 57.051 39.130 5.01 0.00 0.00 3.09
249 262 3.390135 TCGAATCTAAGGCCAATAAGCG 58.610 45.455 5.01 0.00 0.00 4.68
250 263 3.069016 TCGAATCTAAGGCCAATAAGCGA 59.931 43.478 5.01 2.68 0.00 4.93
251 264 3.997021 CGAATCTAAGGCCAATAAGCGAT 59.003 43.478 5.01 0.00 0.00 4.58
252 265 4.143030 CGAATCTAAGGCCAATAAGCGATG 60.143 45.833 5.01 0.00 0.00 3.84
253 266 3.838244 TCTAAGGCCAATAAGCGATGT 57.162 42.857 5.01 0.00 0.00 3.06
254 267 4.948341 TCTAAGGCCAATAAGCGATGTA 57.052 40.909 5.01 0.00 0.00 2.29
255 268 5.483685 TCTAAGGCCAATAAGCGATGTAT 57.516 39.130 5.01 0.00 0.00 2.29
256 269 5.237815 TCTAAGGCCAATAAGCGATGTATG 58.762 41.667 5.01 0.00 0.00 2.39
257 270 3.492102 AGGCCAATAAGCGATGTATGT 57.508 42.857 5.01 0.00 0.00 2.29
258 271 3.820557 AGGCCAATAAGCGATGTATGTT 58.179 40.909 5.01 0.00 0.00 2.71
259 272 4.968259 AGGCCAATAAGCGATGTATGTTA 58.032 39.130 5.01 0.00 0.00 2.41
260 273 5.560724 AGGCCAATAAGCGATGTATGTTAT 58.439 37.500 5.01 0.00 0.00 1.89
261 274 5.643777 AGGCCAATAAGCGATGTATGTTATC 59.356 40.000 5.01 0.00 0.00 1.75
262 275 5.163754 GGCCAATAAGCGATGTATGTTATCC 60.164 44.000 0.00 0.00 0.00 2.59
263 276 5.163754 GCCAATAAGCGATGTATGTTATCCC 60.164 44.000 0.00 0.00 0.00 3.85
264 277 5.937540 CCAATAAGCGATGTATGTTATCCCA 59.062 40.000 0.00 0.00 0.00 4.37
265 278 6.429692 CCAATAAGCGATGTATGTTATCCCAA 59.570 38.462 0.00 0.00 0.00 4.12
266 279 7.040755 CCAATAAGCGATGTATGTTATCCCAAA 60.041 37.037 0.00 0.00 0.00 3.28
267 280 7.672983 ATAAGCGATGTATGTTATCCCAAAG 57.327 36.000 0.00 0.00 0.00 2.77
268 281 4.389374 AGCGATGTATGTTATCCCAAAGG 58.611 43.478 0.00 0.00 0.00 3.11
269 282 3.058224 GCGATGTATGTTATCCCAAAGGC 60.058 47.826 0.00 0.00 0.00 4.35
270 283 3.502211 CGATGTATGTTATCCCAAAGGCC 59.498 47.826 0.00 0.00 0.00 5.19
271 284 4.469657 GATGTATGTTATCCCAAAGGCCA 58.530 43.478 5.01 0.00 0.00 5.36
272 285 4.534647 TGTATGTTATCCCAAAGGCCAT 57.465 40.909 5.01 0.00 0.00 4.40
273 286 4.214310 TGTATGTTATCCCAAAGGCCATG 58.786 43.478 5.01 3.01 0.00 3.66
274 287 2.157640 TGTTATCCCAAAGGCCATGG 57.842 50.000 18.33 18.33 37.71 3.66
275 288 0.752658 GTTATCCCAAAGGCCATGGC 59.247 55.000 29.47 29.47 36.58 4.40
276 289 0.337773 TTATCCCAAAGGCCATGGCA 59.662 50.000 36.56 16.15 44.11 4.92
277 290 0.337773 TATCCCAAAGGCCATGGCAA 59.662 50.000 36.56 13.51 44.11 4.52
278 291 0.547229 ATCCCAAAGGCCATGGCAAA 60.547 50.000 36.56 14.21 44.11 3.68
279 292 1.003476 CCCAAAGGCCATGGCAAAC 60.003 57.895 36.56 20.45 44.11 2.93
280 293 1.003476 CCAAAGGCCATGGCAAACC 60.003 57.895 36.56 20.07 44.11 3.27
281 294 1.003476 CAAAGGCCATGGCAAACCC 60.003 57.895 36.56 19.69 44.11 4.11
282 295 2.582493 AAAGGCCATGGCAAACCCG 61.582 57.895 36.56 0.00 44.11 5.28
283 296 3.521765 AAGGCCATGGCAAACCCGA 62.522 57.895 36.56 0.00 44.11 5.14
284 297 3.758931 GGCCATGGCAAACCCGAC 61.759 66.667 36.56 14.15 44.11 4.79
285 298 4.114997 GCCATGGCAAACCCGACG 62.115 66.667 32.08 0.00 41.49 5.12
286 299 3.439540 CCATGGCAAACCCGACGG 61.440 66.667 6.99 6.99 35.87 4.79
302 315 2.822255 GGGCAGCGGCGAAATGTA 60.822 61.111 12.98 0.00 42.47 2.29
303 316 2.709475 GGCAGCGGCGAAATGTAG 59.291 61.111 12.98 0.00 42.47 2.74
304 317 2.023320 GCAGCGGCGAAATGTAGC 59.977 61.111 12.98 0.00 0.00 3.58
305 318 2.464459 GCAGCGGCGAAATGTAGCT 61.464 57.895 12.98 0.00 38.90 3.32
306 319 1.151777 GCAGCGGCGAAATGTAGCTA 61.152 55.000 12.98 0.00 36.28 3.32
307 320 1.286501 CAGCGGCGAAATGTAGCTAA 58.713 50.000 12.98 0.00 36.28 3.09
308 321 1.663643 CAGCGGCGAAATGTAGCTAAA 59.336 47.619 12.98 0.00 36.28 1.85
309 322 2.095213 CAGCGGCGAAATGTAGCTAAAA 59.905 45.455 12.98 0.00 36.28 1.52
310 323 2.745281 AGCGGCGAAATGTAGCTAAAAA 59.255 40.909 12.98 0.00 36.28 1.94
311 324 3.098636 GCGGCGAAATGTAGCTAAAAAG 58.901 45.455 12.98 0.00 0.00 2.27
312 325 3.181514 GCGGCGAAATGTAGCTAAAAAGA 60.182 43.478 12.98 0.00 0.00 2.52
313 326 4.495844 GCGGCGAAATGTAGCTAAAAAGAT 60.496 41.667 12.98 0.00 0.00 2.40
314 327 5.569413 CGGCGAAATGTAGCTAAAAAGATT 58.431 37.500 0.00 0.00 0.00 2.40
315 328 6.027749 CGGCGAAATGTAGCTAAAAAGATTT 58.972 36.000 0.00 0.00 0.00 2.17
316 329 6.194692 CGGCGAAATGTAGCTAAAAAGATTTC 59.805 38.462 0.00 0.86 0.00 2.17
317 330 6.472486 GGCGAAATGTAGCTAAAAAGATTTCC 59.528 38.462 9.87 4.90 0.00 3.13
318 331 7.027161 GCGAAATGTAGCTAAAAAGATTTCCA 58.973 34.615 9.87 0.00 0.00 3.53
319 332 7.218963 GCGAAATGTAGCTAAAAAGATTTCCAG 59.781 37.037 9.87 1.54 0.00 3.86
320 333 7.218963 CGAAATGTAGCTAAAAAGATTTCCAGC 59.781 37.037 9.87 3.95 0.00 4.85
321 334 7.466746 AATGTAGCTAAAAAGATTTCCAGCA 57.533 32.000 0.00 0.00 32.43 4.41
322 335 6.892658 TGTAGCTAAAAAGATTTCCAGCAA 57.107 33.333 0.00 0.00 32.43 3.91
323 336 7.466746 TGTAGCTAAAAAGATTTCCAGCAAT 57.533 32.000 0.00 0.00 32.43 3.56
324 337 7.315142 TGTAGCTAAAAAGATTTCCAGCAATG 58.685 34.615 0.00 0.00 32.43 2.82
325 338 6.594788 AGCTAAAAAGATTTCCAGCAATGA 57.405 33.333 11.45 0.00 32.43 2.57
326 339 6.393171 AGCTAAAAAGATTTCCAGCAATGAC 58.607 36.000 11.45 0.00 32.43 3.06
327 340 5.287035 GCTAAAAAGATTTCCAGCAATGACG 59.713 40.000 6.34 0.00 31.17 4.35
328 341 2.927553 AAGATTTCCAGCAATGACGC 57.072 45.000 0.00 0.00 0.00 5.19
329 342 0.729116 AGATTTCCAGCAATGACGCG 59.271 50.000 3.53 3.53 36.85 6.01
330 343 0.248215 GATTTCCAGCAATGACGCGG 60.248 55.000 12.47 0.00 36.85 6.46
331 344 2.270297 ATTTCCAGCAATGACGCGGC 62.270 55.000 12.47 8.67 36.85 6.53
332 345 4.695993 TCCAGCAATGACGCGGCA 62.696 61.111 21.39 21.39 36.85 5.69
333 346 4.465512 CCAGCAATGACGCGGCAC 62.466 66.667 21.63 4.29 36.85 5.01
352 365 4.489771 CACTCCCCCACCCGCATC 62.490 72.222 0.00 0.00 0.00 3.91
354 367 4.489771 CTCCCCCACCCGCATCAC 62.490 72.222 0.00 0.00 0.00 3.06
363 376 3.576356 CCGCATCACGCCACCATC 61.576 66.667 0.00 0.00 41.76 3.51
364 377 3.928769 CGCATCACGCCACCATCG 61.929 66.667 0.00 0.00 37.30 3.84
365 378 2.819595 GCATCACGCCACCATCGT 60.820 61.111 0.00 0.00 41.28 3.73
366 379 2.813179 GCATCACGCCACCATCGTC 61.813 63.158 0.00 0.00 38.19 4.20
367 380 1.447663 CATCACGCCACCATCGTCA 60.448 57.895 0.00 0.00 38.19 4.35
368 381 0.811219 CATCACGCCACCATCGTCAT 60.811 55.000 0.00 0.00 38.19 3.06
369 382 0.811219 ATCACGCCACCATCGTCATG 60.811 55.000 0.00 0.00 38.19 3.07
370 383 2.819595 ACGCCACCATCGTCATGC 60.820 61.111 0.00 0.00 34.84 4.06
371 384 3.928769 CGCCACCATCGTCATGCG 61.929 66.667 3.55 3.55 43.01 4.73
372 385 4.241999 GCCACCATCGTCATGCGC 62.242 66.667 0.00 0.00 41.07 6.09
373 386 2.512286 CCACCATCGTCATGCGCT 60.512 61.111 9.73 0.00 41.07 5.92
374 387 2.705220 CACCATCGTCATGCGCTG 59.295 61.111 9.73 4.58 41.07 5.18
375 388 1.810853 CACCATCGTCATGCGCTGA 60.811 57.895 9.73 7.24 38.84 4.26
381 394 3.075998 GTCATGCGCTGACGACAG 58.924 61.111 19.31 10.66 44.58 3.51
382 395 1.734477 GTCATGCGCTGACGACAGT 60.734 57.895 19.31 0.00 44.58 3.55
383 396 1.678269 GTCATGCGCTGACGACAGTC 61.678 60.000 19.31 9.06 44.58 3.51
392 405 2.251667 ACGACAGTCGCTCGTCAC 59.748 61.111 23.09 0.00 45.12 3.67
393 406 2.865603 CGACAGTCGCTCGTCACG 60.866 66.667 10.66 0.00 31.14 4.35
394 407 3.166630 GACAGTCGCTCGTCACGC 61.167 66.667 0.00 0.00 32.24 5.34
405 418 2.733593 GTCACGCGTCGCTCCTTT 60.734 61.111 9.86 0.00 0.00 3.11
406 419 2.430244 TCACGCGTCGCTCCTTTC 60.430 61.111 9.86 0.00 0.00 2.62
407 420 3.479269 CACGCGTCGCTCCTTTCC 61.479 66.667 9.86 0.00 0.00 3.13
408 421 3.986006 ACGCGTCGCTCCTTTCCA 61.986 61.111 16.36 0.00 0.00 3.53
409 422 3.181967 CGCGTCGCTCCTTTCCAG 61.182 66.667 16.36 0.00 0.00 3.86
410 423 2.815647 GCGTCGCTCCTTTCCAGG 60.816 66.667 10.68 0.00 42.50 4.45
419 432 0.625849 TCCTTTCCAGGATGCTTCCC 59.374 55.000 14.77 0.00 45.20 3.97
420 433 0.396278 CCTTTCCAGGATGCTTCCCC 60.396 60.000 14.77 0.00 44.19 4.81
421 434 0.396278 CTTTCCAGGATGCTTCCCCC 60.396 60.000 14.77 0.00 43.76 5.40
422 435 0.850883 TTTCCAGGATGCTTCCCCCT 60.851 55.000 14.77 0.00 43.76 4.79
423 436 0.850883 TTCCAGGATGCTTCCCCCTT 60.851 55.000 14.77 0.00 43.76 3.95
424 437 1.076485 CCAGGATGCTTCCCCCTTG 60.076 63.158 14.77 6.80 43.76 3.61
425 438 1.076485 CAGGATGCTTCCCCCTTGG 60.076 63.158 14.77 0.00 43.76 3.61
426 439 1.230281 AGGATGCTTCCCCCTTGGA 60.230 57.895 14.77 0.00 43.76 3.53
427 440 1.076705 GGATGCTTCCCCCTTGGAC 60.077 63.158 7.41 0.00 45.11 4.02
428 441 1.575447 GGATGCTTCCCCCTTGGACT 61.575 60.000 7.41 0.00 45.11 3.85
429 442 1.213296 GATGCTTCCCCCTTGGACTA 58.787 55.000 0.00 0.00 45.11 2.59
430 443 1.777272 GATGCTTCCCCCTTGGACTAT 59.223 52.381 0.00 0.00 45.11 2.12
431 444 1.213296 TGCTTCCCCCTTGGACTATC 58.787 55.000 0.00 0.00 45.11 2.08
432 445 0.474614 GCTTCCCCCTTGGACTATCC 59.525 60.000 0.00 0.00 45.11 2.59
433 446 1.141185 CTTCCCCCTTGGACTATCCC 58.859 60.000 0.00 0.00 45.11 3.85
434 447 0.728843 TTCCCCCTTGGACTATCCCT 59.271 55.000 0.00 0.00 45.11 4.20
435 448 0.267960 TCCCCCTTGGACTATCCCTC 59.732 60.000 0.00 0.00 38.61 4.30
436 449 0.768609 CCCCCTTGGACTATCCCTCC 60.769 65.000 0.00 0.00 35.03 4.30
437 450 0.030092 CCCCTTGGACTATCCCTCCA 60.030 60.000 0.00 0.00 35.03 3.86
438 451 1.132500 CCCTTGGACTATCCCTCCAC 58.868 60.000 0.00 0.00 37.54 4.02
439 452 1.625228 CCCTTGGACTATCCCTCCACA 60.625 57.143 0.00 0.00 37.54 4.17
440 453 1.486726 CCTTGGACTATCCCTCCACAC 59.513 57.143 0.00 0.00 37.54 3.82
441 454 1.486726 CTTGGACTATCCCTCCACACC 59.513 57.143 0.00 0.00 37.54 4.16
442 455 0.415830 TGGACTATCCCTCCACACCA 59.584 55.000 0.00 0.00 35.03 4.17
443 456 1.203376 TGGACTATCCCTCCACACCAA 60.203 52.381 0.00 0.00 35.03 3.67
444 457 1.486726 GGACTATCCCTCCACACCAAG 59.513 57.143 0.00 0.00 0.00 3.61
445 458 1.486726 GACTATCCCTCCACACCAAGG 59.513 57.143 0.00 0.00 0.00 3.61
446 459 1.080498 ACTATCCCTCCACACCAAGGA 59.920 52.381 0.00 0.00 34.35 3.36
447 460 2.196595 CTATCCCTCCACACCAAGGAA 58.803 52.381 0.00 0.00 34.35 3.36
448 461 0.995024 ATCCCTCCACACCAAGGAAG 59.005 55.000 0.00 0.00 34.35 3.46
449 462 1.303643 CCCTCCACACCAAGGAAGC 60.304 63.158 0.00 0.00 34.35 3.86
450 463 1.763770 CCTCCACACCAAGGAAGCT 59.236 57.895 0.00 0.00 34.35 3.74
451 464 0.322008 CCTCCACACCAAGGAAGCTC 60.322 60.000 0.00 0.00 34.35 4.09
452 465 0.397941 CTCCACACCAAGGAAGCTCA 59.602 55.000 0.00 0.00 34.08 4.26
453 466 1.004044 CTCCACACCAAGGAAGCTCAT 59.996 52.381 0.00 0.00 34.08 2.90
454 467 1.425066 TCCACACCAAGGAAGCTCATT 59.575 47.619 0.00 0.00 30.71 2.57
455 468 2.158475 TCCACACCAAGGAAGCTCATTT 60.158 45.455 0.00 0.00 30.71 2.32
456 469 2.029649 CCACACCAAGGAAGCTCATTTG 60.030 50.000 0.00 0.00 0.00 2.32
457 470 2.029649 CACACCAAGGAAGCTCATTTGG 60.030 50.000 16.99 16.99 44.38 3.28
458 471 1.547372 CACCAAGGAAGCTCATTTGGG 59.453 52.381 20.59 7.96 43.38 4.12
459 472 1.428912 ACCAAGGAAGCTCATTTGGGA 59.571 47.619 20.59 0.00 43.38 4.37
460 473 2.158325 ACCAAGGAAGCTCATTTGGGAA 60.158 45.455 20.59 0.00 43.38 3.97
461 474 2.899256 CCAAGGAAGCTCATTTGGGAAA 59.101 45.455 12.79 0.00 37.11 3.13
462 475 3.306294 CCAAGGAAGCTCATTTGGGAAAC 60.306 47.826 12.79 0.00 37.11 2.78
463 476 3.532641 AGGAAGCTCATTTGGGAAACT 57.467 42.857 0.00 0.00 0.00 2.66
464 477 4.657814 AGGAAGCTCATTTGGGAAACTA 57.342 40.909 0.00 0.00 0.00 2.24
465 478 4.336280 AGGAAGCTCATTTGGGAAACTAC 58.664 43.478 0.00 0.00 0.00 2.73
466 479 3.444034 GGAAGCTCATTTGGGAAACTACC 59.556 47.826 0.00 0.00 0.00 3.18
467 480 3.806949 AGCTCATTTGGGAAACTACCA 57.193 42.857 0.00 0.00 35.88 3.25
468 481 4.322057 AGCTCATTTGGGAAACTACCAT 57.678 40.909 0.00 0.00 37.93 3.55
469 482 4.019174 AGCTCATTTGGGAAACTACCATG 58.981 43.478 0.00 0.00 37.93 3.66
470 483 3.131046 GCTCATTTGGGAAACTACCATGG 59.869 47.826 11.19 11.19 37.93 3.66
471 484 4.599041 CTCATTTGGGAAACTACCATGGA 58.401 43.478 21.47 0.67 37.93 3.41
472 485 5.203528 CTCATTTGGGAAACTACCATGGAT 58.796 41.667 21.47 5.32 37.93 3.41
473 486 4.955450 TCATTTGGGAAACTACCATGGATG 59.045 41.667 21.47 12.85 37.93 3.51
474 487 2.435372 TGGGAAACTACCATGGATGC 57.565 50.000 21.47 4.07 31.83 3.91
475 488 1.638070 TGGGAAACTACCATGGATGCA 59.362 47.619 21.47 0.00 31.83 3.96
476 489 2.024414 GGGAAACTACCATGGATGCAC 58.976 52.381 21.47 4.96 0.00 4.57
477 490 2.024414 GGAAACTACCATGGATGCACC 58.976 52.381 21.47 10.49 39.54 5.01
478 491 2.024414 GAAACTACCATGGATGCACCC 58.976 52.381 21.47 0.00 38.00 4.61
479 492 0.107214 AACTACCATGGATGCACCCG 60.107 55.000 21.47 0.00 38.00 5.28
480 493 1.227943 CTACCATGGATGCACCCGG 60.228 63.158 21.47 0.00 38.00 5.73
481 494 1.983119 CTACCATGGATGCACCCGGT 61.983 60.000 21.47 1.83 43.19 5.28
482 495 2.264120 TACCATGGATGCACCCGGTG 62.264 60.000 21.47 13.71 41.57 4.94
496 509 2.870372 GGTGCACGATGCTCAACC 59.130 61.111 11.45 6.81 45.31 3.77
497 510 2.476051 GTGCACGATGCTCAACCG 59.524 61.111 0.00 0.00 45.31 4.44
498 511 3.422303 TGCACGATGCTCAACCGC 61.422 61.111 10.54 0.00 45.31 5.68
499 512 4.505217 GCACGATGCTCAACCGCG 62.505 66.667 0.00 0.00 40.96 6.46
500 513 4.505217 CACGATGCTCAACCGCGC 62.505 66.667 0.00 0.00 0.00 6.86
528 541 2.436646 GGTGCCCACCGATCAGTG 60.437 66.667 1.81 1.81 42.29 3.66
529 542 2.347490 GTGCCCACCGATCAGTGT 59.653 61.111 8.24 0.00 35.93 3.55
530 543 2.034879 GTGCCCACCGATCAGTGTG 61.035 63.158 8.24 4.45 35.93 3.82
531 544 2.213513 TGCCCACCGATCAGTGTGA 61.214 57.895 8.24 0.00 35.93 3.58
532 545 1.741770 GCCCACCGATCAGTGTGAC 60.742 63.158 8.24 0.00 35.93 3.67
533 546 1.446099 CCCACCGATCAGTGTGACG 60.446 63.158 8.24 0.00 35.93 4.35
534 547 1.446099 CCACCGATCAGTGTGACGG 60.446 63.158 18.05 18.05 42.50 4.79
535 548 2.094659 CACCGATCAGTGTGACGGC 61.095 63.158 19.01 0.00 41.42 5.68
536 549 2.509336 CCGATCAGTGTGACGGCC 60.509 66.667 10.91 0.00 35.51 6.13
537 550 2.573869 CGATCAGTGTGACGGCCT 59.426 61.111 0.00 0.00 0.00 5.19
538 551 1.807165 CGATCAGTGTGACGGCCTG 60.807 63.158 0.00 0.00 0.00 4.85
539 552 2.046892 ATCAGTGTGACGGCCTGC 60.047 61.111 0.00 0.00 0.00 4.85
540 553 2.786539 GATCAGTGTGACGGCCTGCA 62.787 60.000 0.00 0.00 0.00 4.41
541 554 3.349006 CAGTGTGACGGCCTGCAC 61.349 66.667 15.60 15.60 35.63 4.57
542 555 4.969196 AGTGTGACGGCCTGCACG 62.969 66.667 16.84 0.00 37.83 5.34
543 556 4.961511 GTGTGACGGCCTGCACGA 62.962 66.667 16.84 6.62 37.83 4.35
544 557 4.662961 TGTGACGGCCTGCACGAG 62.663 66.667 16.84 0.00 37.83 4.18
565 578 2.188731 GGCTACGCCTTACCCACC 59.811 66.667 0.00 0.00 46.69 4.61
566 579 2.188731 GCTACGCCTTACCCACCC 59.811 66.667 0.00 0.00 0.00 4.61
567 580 2.662070 GCTACGCCTTACCCACCCA 61.662 63.158 0.00 0.00 0.00 4.51
568 581 1.219935 CTACGCCTTACCCACCCAC 59.780 63.158 0.00 0.00 0.00 4.61
569 582 2.248086 CTACGCCTTACCCACCCACC 62.248 65.000 0.00 0.00 0.00 4.61
570 583 2.752036 TACGCCTTACCCACCCACCT 62.752 60.000 0.00 0.00 0.00 4.00
571 584 1.991167 CGCCTTACCCACCCACCTA 60.991 63.158 0.00 0.00 0.00 3.08
572 585 1.605992 GCCTTACCCACCCACCTAC 59.394 63.158 0.00 0.00 0.00 3.18
573 586 1.902556 CCTTACCCACCCACCTACG 59.097 63.158 0.00 0.00 0.00 3.51
574 587 1.219935 CTTACCCACCCACCTACGC 59.780 63.158 0.00 0.00 0.00 4.42
575 588 1.535930 TTACCCACCCACCTACGCA 60.536 57.895 0.00 0.00 0.00 5.24
576 589 1.546589 TTACCCACCCACCTACGCAG 61.547 60.000 0.00 0.00 0.00 5.18
577 590 2.444004 TACCCACCCACCTACGCAGA 62.444 60.000 0.00 0.00 0.00 4.26
578 591 2.579201 CCACCCACCTACGCAGAG 59.421 66.667 0.00 0.00 0.00 3.35
579 592 2.125512 CACCCACCTACGCAGAGC 60.126 66.667 0.00 0.00 0.00 4.09
590 603 3.857854 GCAGAGCGGCATCACACG 61.858 66.667 1.45 0.00 0.00 4.49
591 604 2.125952 CAGAGCGGCATCACACGA 60.126 61.111 1.45 0.00 0.00 4.35
592 605 1.520120 CAGAGCGGCATCACACGAT 60.520 57.895 1.45 0.00 0.00 3.73
593 606 0.249031 CAGAGCGGCATCACACGATA 60.249 55.000 1.45 0.00 0.00 2.92
594 607 0.249073 AGAGCGGCATCACACGATAC 60.249 55.000 1.45 0.00 0.00 2.24
595 608 1.215655 GAGCGGCATCACACGATACC 61.216 60.000 1.45 0.00 32.30 2.73
596 609 1.520564 GCGGCATCACACGATACCA 60.521 57.895 0.00 0.00 35.03 3.25
597 610 1.762222 GCGGCATCACACGATACCAC 61.762 60.000 0.00 0.00 35.03 4.16
598 611 1.151777 CGGCATCACACGATACCACC 61.152 60.000 0.00 0.00 35.03 4.61
599 612 1.151777 GGCATCACACGATACCACCG 61.152 60.000 0.00 0.00 35.38 4.94
600 613 1.762222 GCATCACACGATACCACCGC 61.762 60.000 0.00 0.00 0.00 5.68
601 614 0.459411 CATCACACGATACCACCGCA 60.459 55.000 0.00 0.00 0.00 5.69
602 615 0.459585 ATCACACGATACCACCGCAC 60.460 55.000 0.00 0.00 0.00 5.34
603 616 2.126228 ACACGATACCACCGCACG 60.126 61.111 0.00 0.00 0.00 5.34
604 617 3.550992 CACGATACCACCGCACGC 61.551 66.667 0.00 0.00 0.00 5.34
605 618 4.058732 ACGATACCACCGCACGCA 62.059 61.111 0.00 0.00 0.00 5.24
606 619 3.550992 CGATACCACCGCACGCAC 61.551 66.667 0.00 0.00 0.00 5.34
607 620 2.433491 GATACCACCGCACGCACA 60.433 61.111 0.00 0.00 0.00 4.57
608 621 2.434185 ATACCACCGCACGCACAG 60.434 61.111 0.00 0.00 0.00 3.66
609 622 3.950794 ATACCACCGCACGCACAGG 62.951 63.158 0.00 0.00 0.00 4.00
611 624 4.673298 CCACCGCACGCACAGGTA 62.673 66.667 0.00 0.00 36.34 3.08
612 625 3.112075 CACCGCACGCACAGGTAG 61.112 66.667 0.00 0.00 36.34 3.18
613 626 3.612681 ACCGCACGCACAGGTAGT 61.613 61.111 0.00 0.00 36.34 2.73
614 627 2.809601 CCGCACGCACAGGTAGTC 60.810 66.667 0.00 0.00 0.00 2.59
615 628 3.172575 CGCACGCACAGGTAGTCG 61.173 66.667 0.00 0.00 0.00 4.18
616 629 3.479269 GCACGCACAGGTAGTCGC 61.479 66.667 0.00 0.00 0.00 5.19
617 630 2.809601 CACGCACAGGTAGTCGCC 60.810 66.667 0.00 0.00 0.00 5.54
618 631 3.299977 ACGCACAGGTAGTCGCCA 61.300 61.111 0.00 0.00 0.00 5.69
619 632 2.048597 CGCACAGGTAGTCGCCAA 60.049 61.111 0.00 0.00 0.00 4.52
620 633 2.380410 CGCACAGGTAGTCGCCAAC 61.380 63.158 0.00 0.00 0.00 3.77
621 634 2.033194 GCACAGGTAGTCGCCAACC 61.033 63.158 0.00 0.00 35.91 3.77
622 635 1.369692 CACAGGTAGTCGCCAACCA 59.630 57.895 3.27 0.00 38.30 3.67
623 636 0.036388 CACAGGTAGTCGCCAACCAT 60.036 55.000 3.27 0.00 38.30 3.55
624 637 0.036388 ACAGGTAGTCGCCAACCATG 60.036 55.000 3.27 0.00 38.30 3.66
625 638 0.249120 CAGGTAGTCGCCAACCATGA 59.751 55.000 0.00 0.00 38.30 3.07
626 639 1.134401 CAGGTAGTCGCCAACCATGAT 60.134 52.381 0.00 0.00 38.30 2.45
627 640 2.102420 CAGGTAGTCGCCAACCATGATA 59.898 50.000 0.00 0.00 38.30 2.15
628 641 2.972713 AGGTAGTCGCCAACCATGATAT 59.027 45.455 0.00 0.00 38.30 1.63
629 642 4.021456 CAGGTAGTCGCCAACCATGATATA 60.021 45.833 0.00 0.00 38.30 0.86
630 643 4.777896 AGGTAGTCGCCAACCATGATATAT 59.222 41.667 0.00 0.00 38.30 0.86
631 644 5.955959 AGGTAGTCGCCAACCATGATATATA 59.044 40.000 0.00 0.00 38.30 0.86
632 645 6.096987 AGGTAGTCGCCAACCATGATATATAG 59.903 42.308 0.00 0.00 38.30 1.31
771 785 2.093890 CATGCATGGTTTGGCTAGTGA 58.906 47.619 19.40 0.00 0.00 3.41
846 860 2.288334 GGCATGCAAGTGTGAACATGAA 60.288 45.455 21.36 0.00 41.93 2.57
966 980 4.696479 TTGCTCTCTTTCAGTTTCTCCT 57.304 40.909 0.00 0.00 0.00 3.69
1029 1043 2.358737 CAAGGCGTGGTGGAGGTC 60.359 66.667 0.00 0.00 0.00 3.85
1694 2034 7.062488 ACGGTGTAAATTTTCAGTTCAAAACAC 59.938 33.333 0.00 0.55 0.00 3.32
1755 2330 5.049828 CGAATAGTAGCACCATCACATGAA 58.950 41.667 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.326069 ACTCATGACAAGACTACTACTGGT 58.674 41.667 0.00 0.00 0.00 4.00
43 44 6.586082 GGACATTAAGCCACATGTAAAAGTTG 59.414 38.462 0.00 0.00 33.62 3.16
44 45 6.569610 CGGACATTAAGCCACATGTAAAAGTT 60.570 38.462 0.00 0.00 33.62 2.66
53 54 2.951642 CAATCCGGACATTAAGCCACAT 59.048 45.455 6.12 0.00 0.00 3.21
54 55 2.290641 ACAATCCGGACATTAAGCCACA 60.291 45.455 6.12 0.00 0.00 4.17
55 56 2.365582 ACAATCCGGACATTAAGCCAC 58.634 47.619 6.12 0.00 0.00 5.01
56 57 2.799126 ACAATCCGGACATTAAGCCA 57.201 45.000 6.12 0.00 0.00 4.75
57 58 2.357952 GGAACAATCCGGACATTAAGCC 59.642 50.000 6.12 0.00 35.59 4.35
58 59 3.692791 GGAACAATCCGGACATTAAGC 57.307 47.619 6.12 0.00 35.59 3.09
156 169 0.536233 CACGTGTTGGGGTGGATTGA 60.536 55.000 7.58 0.00 0.00 2.57
176 189 2.159627 GCGGAGTGGAAATGTGTTACAG 59.840 50.000 0.00 0.00 0.00 2.74
197 210 4.680237 TTCCAGGCCGTCGTGCTG 62.680 66.667 0.00 0.00 0.00 4.41
198 211 4.681978 GTTCCAGGCCGTCGTGCT 62.682 66.667 0.00 0.00 0.00 4.40
203 216 3.952628 CTTCCCGTTCCAGGCCGTC 62.953 68.421 0.00 0.00 0.00 4.79
204 217 4.016706 CTTCCCGTTCCAGGCCGT 62.017 66.667 0.00 0.00 0.00 5.68
205 218 3.952628 GACTTCCCGTTCCAGGCCG 62.953 68.421 0.00 0.00 0.00 6.13
206 219 2.046217 GACTTCCCGTTCCAGGCC 60.046 66.667 0.00 0.00 0.00 5.19
207 220 2.046217 GGACTTCCCGTTCCAGGC 60.046 66.667 0.00 0.00 0.00 4.85
208 221 0.109723 TTTGGACTTCCCGTTCCAGG 59.890 55.000 0.00 0.00 37.93 4.45
209 222 2.084546 GATTTGGACTTCCCGTTCCAG 58.915 52.381 0.00 0.00 37.93 3.86
210 223 1.609580 CGATTTGGACTTCCCGTTCCA 60.610 52.381 0.00 0.00 37.93 3.53
211 224 1.084289 CGATTTGGACTTCCCGTTCC 58.916 55.000 0.00 0.00 37.93 3.62
212 225 2.088950 TCGATTTGGACTTCCCGTTC 57.911 50.000 0.00 0.00 37.93 3.95
213 226 2.554370 TTCGATTTGGACTTCCCGTT 57.446 45.000 0.00 0.00 37.93 4.44
214 227 2.236395 AGATTCGATTTGGACTTCCCGT 59.764 45.455 0.00 0.00 37.93 5.28
215 228 2.906354 AGATTCGATTTGGACTTCCCG 58.094 47.619 0.00 0.00 37.93 5.14
216 229 4.816925 CCTTAGATTCGATTTGGACTTCCC 59.183 45.833 0.00 0.00 34.29 3.97
217 230 4.273724 GCCTTAGATTCGATTTGGACTTCC 59.726 45.833 0.00 0.00 0.00 3.46
218 231 4.273724 GGCCTTAGATTCGATTTGGACTTC 59.726 45.833 0.00 0.00 0.00 3.01
219 232 4.200092 GGCCTTAGATTCGATTTGGACTT 58.800 43.478 0.00 0.00 0.00 3.01
220 233 3.199946 TGGCCTTAGATTCGATTTGGACT 59.800 43.478 3.32 0.00 0.00 3.85
221 234 3.541632 TGGCCTTAGATTCGATTTGGAC 58.458 45.455 3.32 0.00 0.00 4.02
222 235 3.924114 TGGCCTTAGATTCGATTTGGA 57.076 42.857 3.32 0.00 0.00 3.53
223 236 6.633500 TTATTGGCCTTAGATTCGATTTGG 57.367 37.500 3.32 0.00 0.00 3.28
224 237 6.145535 GCTTATTGGCCTTAGATTCGATTTG 58.854 40.000 3.32 0.00 0.00 2.32
225 238 5.049405 CGCTTATTGGCCTTAGATTCGATTT 60.049 40.000 3.32 0.00 0.00 2.17
226 239 4.452455 CGCTTATTGGCCTTAGATTCGATT 59.548 41.667 3.32 0.00 0.00 3.34
227 240 3.997021 CGCTTATTGGCCTTAGATTCGAT 59.003 43.478 3.32 0.00 0.00 3.59
228 241 3.069016 TCGCTTATTGGCCTTAGATTCGA 59.931 43.478 3.32 2.22 0.00 3.71
229 242 3.390135 TCGCTTATTGGCCTTAGATTCG 58.610 45.455 3.32 0.00 0.00 3.34
230 243 4.757149 ACATCGCTTATTGGCCTTAGATTC 59.243 41.667 3.32 0.00 0.00 2.52
231 244 4.718961 ACATCGCTTATTGGCCTTAGATT 58.281 39.130 3.32 0.00 0.00 2.40
232 245 4.357918 ACATCGCTTATTGGCCTTAGAT 57.642 40.909 3.32 0.00 0.00 1.98
233 246 3.838244 ACATCGCTTATTGGCCTTAGA 57.162 42.857 3.32 0.00 0.00 2.10
234 247 4.997395 ACATACATCGCTTATTGGCCTTAG 59.003 41.667 3.32 0.00 0.00 2.18
235 248 4.968259 ACATACATCGCTTATTGGCCTTA 58.032 39.130 3.32 0.00 0.00 2.69
236 249 3.820557 ACATACATCGCTTATTGGCCTT 58.179 40.909 3.32 0.00 0.00 4.35
237 250 3.492102 ACATACATCGCTTATTGGCCT 57.508 42.857 3.32 0.00 0.00 5.19
238 251 5.163754 GGATAACATACATCGCTTATTGGCC 60.164 44.000 0.00 0.00 0.00 5.36
239 252 5.163754 GGGATAACATACATCGCTTATTGGC 60.164 44.000 0.00 0.00 33.74 4.52
240 253 5.937540 TGGGATAACATACATCGCTTATTGG 59.062 40.000 0.00 0.00 36.57 3.16
241 254 7.433708 TTGGGATAACATACATCGCTTATTG 57.566 36.000 0.00 0.00 36.57 1.90
242 255 7.174946 CCTTTGGGATAACATACATCGCTTATT 59.825 37.037 0.00 0.00 36.57 1.40
243 256 6.655003 CCTTTGGGATAACATACATCGCTTAT 59.345 38.462 0.00 0.00 36.57 1.73
244 257 5.995282 CCTTTGGGATAACATACATCGCTTA 59.005 40.000 0.00 0.00 36.57 3.09
245 258 4.821805 CCTTTGGGATAACATACATCGCTT 59.178 41.667 0.00 0.00 36.57 4.68
246 259 4.389374 CCTTTGGGATAACATACATCGCT 58.611 43.478 0.00 0.00 36.57 4.93
247 260 3.058224 GCCTTTGGGATAACATACATCGC 60.058 47.826 0.00 0.00 36.26 4.58
248 261 3.502211 GGCCTTTGGGATAACATACATCG 59.498 47.826 0.00 0.00 33.58 3.84
249 262 4.469657 TGGCCTTTGGGATAACATACATC 58.530 43.478 3.32 0.00 33.58 3.06
250 263 4.534647 TGGCCTTTGGGATAACATACAT 57.465 40.909 3.32 0.00 33.58 2.29
251 264 4.214310 CATGGCCTTTGGGATAACATACA 58.786 43.478 3.32 0.00 33.58 2.29
252 265 3.573967 CCATGGCCTTTGGGATAACATAC 59.426 47.826 15.42 0.00 33.58 2.39
253 266 3.843422 CCATGGCCTTTGGGATAACATA 58.157 45.455 15.42 0.00 33.58 2.29
254 267 2.681422 CCATGGCCTTTGGGATAACAT 58.319 47.619 15.42 0.00 33.58 2.71
255 268 1.964344 GCCATGGCCTTTGGGATAACA 60.964 52.381 27.24 0.00 34.66 2.41
256 269 0.752658 GCCATGGCCTTTGGGATAAC 59.247 55.000 27.24 5.95 34.66 1.89
257 270 0.337773 TGCCATGGCCTTTGGGATAA 59.662 50.000 33.44 8.21 41.09 1.75
258 271 0.337773 TTGCCATGGCCTTTGGGATA 59.662 50.000 33.44 9.03 41.09 2.59
259 272 0.547229 TTTGCCATGGCCTTTGGGAT 60.547 50.000 33.44 0.00 41.09 3.85
260 273 1.152161 TTTGCCATGGCCTTTGGGA 60.152 52.632 33.44 18.35 41.09 4.37
261 274 1.003476 GTTTGCCATGGCCTTTGGG 60.003 57.895 33.44 11.65 41.09 4.12
262 275 1.003476 GGTTTGCCATGGCCTTTGG 60.003 57.895 33.44 18.08 41.09 3.28
263 276 1.003476 GGGTTTGCCATGGCCTTTG 60.003 57.895 33.44 1.15 41.09 2.77
264 277 2.582493 CGGGTTTGCCATGGCCTTT 61.582 57.895 33.44 0.00 41.09 3.11
265 278 2.996734 CGGGTTTGCCATGGCCTT 60.997 61.111 33.44 0.00 41.09 4.35
266 279 3.978193 TCGGGTTTGCCATGGCCT 61.978 61.111 33.44 0.00 41.09 5.19
267 280 3.758931 GTCGGGTTTGCCATGGCC 61.759 66.667 33.44 18.22 41.09 5.36
268 281 4.114997 CGTCGGGTTTGCCATGGC 62.115 66.667 30.54 30.54 42.35 4.40
269 282 3.439540 CCGTCGGGTTTGCCATGG 61.440 66.667 7.63 7.63 36.17 3.66
270 283 3.439540 CCCGTCGGGTTTGCCATG 61.440 66.667 23.02 0.00 38.25 3.66
285 298 2.822255 TACATTTCGCCGCTGCCC 60.822 61.111 0.00 0.00 0.00 5.36
286 299 2.709475 CTACATTTCGCCGCTGCC 59.291 61.111 0.00 0.00 0.00 4.85
287 300 1.151777 TAGCTACATTTCGCCGCTGC 61.152 55.000 0.00 0.00 32.49 5.25
288 301 1.286501 TTAGCTACATTTCGCCGCTG 58.713 50.000 0.00 0.00 32.49 5.18
289 302 2.018542 TTTAGCTACATTTCGCCGCT 57.981 45.000 0.00 0.00 34.88 5.52
290 303 2.817538 TTTTAGCTACATTTCGCCGC 57.182 45.000 0.00 0.00 0.00 6.53
291 304 4.593597 TCTTTTTAGCTACATTTCGCCG 57.406 40.909 0.00 0.00 0.00 6.46
292 305 6.472486 GGAAATCTTTTTAGCTACATTTCGCC 59.528 38.462 0.00 0.00 33.07 5.54
293 306 7.027161 TGGAAATCTTTTTAGCTACATTTCGC 58.973 34.615 0.00 0.00 33.07 4.70
294 307 7.218963 GCTGGAAATCTTTTTAGCTACATTTCG 59.781 37.037 0.00 0.00 33.07 3.46
295 308 8.028938 TGCTGGAAATCTTTTTAGCTACATTTC 58.971 33.333 0.00 3.33 33.44 2.17
296 309 7.895759 TGCTGGAAATCTTTTTAGCTACATTT 58.104 30.769 0.00 0.00 33.44 2.32
297 310 7.466746 TGCTGGAAATCTTTTTAGCTACATT 57.533 32.000 0.00 0.00 33.44 2.71
298 311 7.466746 TTGCTGGAAATCTTTTTAGCTACAT 57.533 32.000 0.00 0.00 33.44 2.29
299 312 6.892658 TTGCTGGAAATCTTTTTAGCTACA 57.107 33.333 0.00 0.00 33.44 2.74
300 313 7.486232 GTCATTGCTGGAAATCTTTTTAGCTAC 59.514 37.037 0.00 0.00 33.44 3.58
301 314 7.538575 GTCATTGCTGGAAATCTTTTTAGCTA 58.461 34.615 0.00 0.00 33.44 3.32
302 315 6.393171 GTCATTGCTGGAAATCTTTTTAGCT 58.607 36.000 0.00 0.00 33.44 3.32
303 316 5.287035 CGTCATTGCTGGAAATCTTTTTAGC 59.713 40.000 0.00 0.00 33.11 3.09
304 317 5.287035 GCGTCATTGCTGGAAATCTTTTTAG 59.713 40.000 0.00 0.00 0.00 1.85
305 318 5.160641 GCGTCATTGCTGGAAATCTTTTTA 58.839 37.500 0.00 0.00 0.00 1.52
306 319 3.989817 GCGTCATTGCTGGAAATCTTTTT 59.010 39.130 0.00 0.00 0.00 1.94
307 320 3.578688 GCGTCATTGCTGGAAATCTTTT 58.421 40.909 0.00 0.00 0.00 2.27
308 321 2.414559 CGCGTCATTGCTGGAAATCTTT 60.415 45.455 0.00 0.00 0.00 2.52
309 322 1.131126 CGCGTCATTGCTGGAAATCTT 59.869 47.619 0.00 0.00 0.00 2.40
310 323 0.729116 CGCGTCATTGCTGGAAATCT 59.271 50.000 0.00 0.00 0.00 2.40
311 324 0.248215 CCGCGTCATTGCTGGAAATC 60.248 55.000 4.92 0.00 32.62 2.17
312 325 1.802636 CCGCGTCATTGCTGGAAAT 59.197 52.632 4.92 0.00 32.62 2.17
313 326 2.976840 GCCGCGTCATTGCTGGAAA 61.977 57.895 4.92 0.00 32.62 3.13
314 327 3.430862 GCCGCGTCATTGCTGGAA 61.431 61.111 4.92 0.00 32.62 3.53
315 328 4.695993 TGCCGCGTCATTGCTGGA 62.696 61.111 4.92 0.00 32.62 3.86
316 329 4.465512 GTGCCGCGTCATTGCTGG 62.466 66.667 4.92 0.00 0.00 4.85
317 330 4.799473 CGTGCCGCGTCATTGCTG 62.799 66.667 4.92 0.00 35.54 4.41
335 348 4.489771 GATGCGGGTGGGGGAGTG 62.490 72.222 0.00 0.00 0.00 3.51
337 350 4.489771 GTGATGCGGGTGGGGGAG 62.490 72.222 0.00 0.00 0.00 4.30
348 361 2.813179 GACGATGGTGGCGTGATGC 61.813 63.158 0.00 0.00 42.77 3.91
349 362 0.811219 ATGACGATGGTGGCGTGATG 60.811 55.000 0.00 0.00 42.77 3.07
350 363 0.811219 CATGACGATGGTGGCGTGAT 60.811 55.000 0.00 0.00 42.77 3.06
351 364 1.447663 CATGACGATGGTGGCGTGA 60.448 57.895 0.00 0.00 42.77 4.35
352 365 3.092403 CATGACGATGGTGGCGTG 58.908 61.111 0.00 0.00 42.77 5.34
353 366 2.819595 GCATGACGATGGTGGCGT 60.820 61.111 0.00 0.00 45.79 5.68
365 378 1.444383 GACTGTCGTCAGCGCATGA 60.444 57.895 11.47 7.90 44.77 3.07
366 379 2.782045 CGACTGTCGTCAGCGCATG 61.782 63.158 21.30 5.22 44.77 4.06
367 380 2.504899 CGACTGTCGTCAGCGCAT 60.505 61.111 21.30 0.00 44.77 4.73
370 383 2.872001 GAGCGACTGTCGTCAGCG 60.872 66.667 28.38 14.09 44.77 5.18
371 384 2.872001 CGAGCGACTGTCGTCAGC 60.872 66.667 28.38 13.74 44.77 4.26
376 389 2.865603 CGTGACGAGCGACTGTCG 60.866 66.667 24.78 24.78 43.89 4.35
377 390 3.166630 GCGTGACGAGCGACTGTC 61.167 66.667 10.10 0.00 35.67 3.51
388 401 2.717809 GAAAGGAGCGACGCGTGAC 61.718 63.158 20.70 8.54 0.00 3.67
389 402 2.430244 GAAAGGAGCGACGCGTGA 60.430 61.111 20.70 0.00 0.00 4.35
390 403 3.479269 GGAAAGGAGCGACGCGTG 61.479 66.667 20.70 10.73 0.00 5.34
391 404 3.916392 CTGGAAAGGAGCGACGCGT 62.916 63.158 13.85 13.85 0.00 6.01
392 405 3.181967 CTGGAAAGGAGCGACGCG 61.182 66.667 15.18 3.53 0.00 6.01
393 406 2.579684 ATCCTGGAAAGGAGCGACGC 62.580 60.000 13.03 13.03 41.88 5.19
394 407 0.807667 CATCCTGGAAAGGAGCGACG 60.808 60.000 0.00 0.00 41.88 5.12
395 408 1.092345 GCATCCTGGAAAGGAGCGAC 61.092 60.000 0.00 0.00 41.88 5.19
396 409 1.221840 GCATCCTGGAAAGGAGCGA 59.778 57.895 0.00 0.00 41.88 4.93
397 410 0.393537 AAGCATCCTGGAAAGGAGCG 60.394 55.000 0.00 0.00 41.88 5.03
398 411 1.387539 GAAGCATCCTGGAAAGGAGC 58.612 55.000 0.00 0.38 41.88 4.70
399 412 1.409381 GGGAAGCATCCTGGAAAGGAG 60.409 57.143 8.09 0.00 45.77 3.69
400 413 0.625849 GGGAAGCATCCTGGAAAGGA 59.374 55.000 8.09 0.00 45.77 3.36
401 414 0.396278 GGGGAAGCATCCTGGAAAGG 60.396 60.000 8.09 0.00 45.77 3.11
402 415 0.396278 GGGGGAAGCATCCTGGAAAG 60.396 60.000 8.09 0.00 45.77 2.62
403 416 0.850883 AGGGGGAAGCATCCTGGAAA 60.851 55.000 8.09 0.00 45.77 3.13
404 417 0.850883 AAGGGGGAAGCATCCTGGAA 60.851 55.000 8.09 0.00 45.77 3.53
405 418 1.230281 AAGGGGGAAGCATCCTGGA 60.230 57.895 8.09 0.00 45.77 3.86
406 419 1.076485 CAAGGGGGAAGCATCCTGG 60.076 63.158 8.09 0.00 45.77 4.45
407 420 1.076485 CCAAGGGGGAAGCATCCTG 60.076 63.158 8.09 0.00 45.77 3.86
408 421 1.230281 TCCAAGGGGGAAGCATCCT 60.230 57.895 8.09 0.00 44.80 3.24
409 422 3.426917 TCCAAGGGGGAAGCATCC 58.573 61.111 0.00 0.00 44.80 3.51
416 429 0.267960 GAGGGATAGTCCAAGGGGGA 59.732 60.000 0.00 0.00 45.89 4.81
417 430 0.768609 GGAGGGATAGTCCAAGGGGG 60.769 65.000 0.00 0.00 38.64 5.40
418 431 0.030092 TGGAGGGATAGTCCAAGGGG 60.030 60.000 0.00 0.00 41.32 4.79
419 432 1.132500 GTGGAGGGATAGTCCAAGGG 58.868 60.000 0.00 0.00 45.85 3.95
420 433 1.486726 GTGTGGAGGGATAGTCCAAGG 59.513 57.143 0.00 0.00 45.85 3.61
421 434 1.486726 GGTGTGGAGGGATAGTCCAAG 59.513 57.143 0.00 0.00 45.85 3.61
422 435 1.203376 TGGTGTGGAGGGATAGTCCAA 60.203 52.381 0.00 0.00 45.85 3.53
423 436 0.415830 TGGTGTGGAGGGATAGTCCA 59.584 55.000 0.00 0.00 42.06 4.02
424 437 1.486726 CTTGGTGTGGAGGGATAGTCC 59.513 57.143 0.00 0.00 35.23 3.85
425 438 1.486726 CCTTGGTGTGGAGGGATAGTC 59.513 57.143 0.00 0.00 0.00 2.59
426 439 1.080498 TCCTTGGTGTGGAGGGATAGT 59.920 52.381 0.00 0.00 33.73 2.12
427 440 1.879575 TCCTTGGTGTGGAGGGATAG 58.120 55.000 0.00 0.00 33.73 2.08
428 441 2.196595 CTTCCTTGGTGTGGAGGGATA 58.803 52.381 0.00 0.00 34.76 2.59
429 442 0.995024 CTTCCTTGGTGTGGAGGGAT 59.005 55.000 0.00 0.00 34.76 3.85
430 443 1.779061 GCTTCCTTGGTGTGGAGGGA 61.779 60.000 0.00 0.00 34.76 4.20
431 444 1.303643 GCTTCCTTGGTGTGGAGGG 60.304 63.158 0.00 0.00 34.76 4.30
432 445 0.322008 GAGCTTCCTTGGTGTGGAGG 60.322 60.000 0.00 0.00 34.76 4.30
433 446 0.397941 TGAGCTTCCTTGGTGTGGAG 59.602 55.000 0.00 0.00 34.76 3.86
434 447 1.067295 ATGAGCTTCCTTGGTGTGGA 58.933 50.000 0.00 0.00 0.00 4.02
435 448 1.915141 AATGAGCTTCCTTGGTGTGG 58.085 50.000 0.00 0.00 0.00 4.17
436 449 2.029649 CCAAATGAGCTTCCTTGGTGTG 60.030 50.000 11.57 0.00 34.77 3.82
437 450 2.242043 CCAAATGAGCTTCCTTGGTGT 58.758 47.619 11.57 0.00 34.77 4.16
438 451 1.547372 CCCAAATGAGCTTCCTTGGTG 59.453 52.381 16.18 7.73 37.25 4.17
439 452 1.428912 TCCCAAATGAGCTTCCTTGGT 59.571 47.619 16.18 0.00 37.25 3.67
440 453 2.220653 TCCCAAATGAGCTTCCTTGG 57.779 50.000 12.44 12.44 38.45 3.61
441 454 3.575687 AGTTTCCCAAATGAGCTTCCTTG 59.424 43.478 0.00 0.00 0.00 3.61
442 455 3.849527 AGTTTCCCAAATGAGCTTCCTT 58.150 40.909 0.00 0.00 0.00 3.36
443 456 3.532641 AGTTTCCCAAATGAGCTTCCT 57.467 42.857 0.00 0.00 0.00 3.36
444 457 3.444034 GGTAGTTTCCCAAATGAGCTTCC 59.556 47.826 0.00 0.00 0.00 3.46
445 458 4.079253 TGGTAGTTTCCCAAATGAGCTTC 58.921 43.478 0.00 0.00 0.00 3.86
446 459 4.112634 TGGTAGTTTCCCAAATGAGCTT 57.887 40.909 0.00 0.00 0.00 3.74
447 460 3.806949 TGGTAGTTTCCCAAATGAGCT 57.193 42.857 0.00 0.00 0.00 4.09
448 461 3.131046 CCATGGTAGTTTCCCAAATGAGC 59.869 47.826 2.57 0.00 35.14 4.26
449 462 4.599041 TCCATGGTAGTTTCCCAAATGAG 58.401 43.478 12.58 0.00 35.14 2.90
450 463 4.666412 TCCATGGTAGTTTCCCAAATGA 57.334 40.909 12.58 0.00 35.14 2.57
451 464 4.441913 GCATCCATGGTAGTTTCCCAAATG 60.442 45.833 12.58 4.50 35.14 2.32
452 465 3.706086 GCATCCATGGTAGTTTCCCAAAT 59.294 43.478 12.58 0.00 35.14 2.32
453 466 3.096092 GCATCCATGGTAGTTTCCCAAA 58.904 45.455 12.58 0.00 35.14 3.28
454 467 2.042297 TGCATCCATGGTAGTTTCCCAA 59.958 45.455 12.58 0.00 35.14 4.12
455 468 1.638070 TGCATCCATGGTAGTTTCCCA 59.362 47.619 12.58 0.00 36.16 4.37
456 469 2.024414 GTGCATCCATGGTAGTTTCCC 58.976 52.381 12.58 0.00 0.00 3.97
457 470 2.024414 GGTGCATCCATGGTAGTTTCC 58.976 52.381 12.58 5.36 35.97 3.13
458 471 2.024414 GGGTGCATCCATGGTAGTTTC 58.976 52.381 12.38 0.00 38.11 2.78
459 472 1.681780 CGGGTGCATCCATGGTAGTTT 60.682 52.381 18.15 0.00 38.11 2.66
460 473 0.107214 CGGGTGCATCCATGGTAGTT 60.107 55.000 18.15 0.00 38.11 2.24
461 474 1.526887 CGGGTGCATCCATGGTAGT 59.473 57.895 18.15 0.00 38.11 2.73
462 475 1.227943 CCGGGTGCATCCATGGTAG 60.228 63.158 18.15 6.73 38.11 3.18
463 476 1.998438 ACCGGGTGCATCCATGGTA 60.998 57.895 18.15 0.00 42.26 3.25
464 477 3.338250 ACCGGGTGCATCCATGGT 61.338 61.111 18.15 13.55 40.26 3.55
465 478 2.829914 CACCGGGTGCATCCATGG 60.830 66.667 18.15 12.81 38.65 3.66
482 495 4.505217 CGCGGTTGAGCATCGTGC 62.505 66.667 0.00 2.28 45.46 5.34
483 496 4.505217 GCGCGGTTGAGCATCGTG 62.505 66.667 8.83 0.00 41.01 4.35
512 525 2.034879 CACACTGATCGGTGGGCAC 61.035 63.158 32.69 0.00 41.09 5.01
513 526 2.213513 TCACACTGATCGGTGGGCA 61.214 57.895 32.69 18.99 40.15 5.36
514 527 1.741770 GTCACACTGATCGGTGGGC 60.742 63.158 32.69 22.69 40.15 5.36
515 528 1.446099 CGTCACACTGATCGGTGGG 60.446 63.158 32.69 30.53 41.55 4.61
516 529 1.446099 CCGTCACACTGATCGGTGG 60.446 63.158 32.69 22.81 41.09 4.61
517 530 2.094659 GCCGTCACACTGATCGGTG 61.095 63.158 29.25 29.25 40.55 4.94
518 531 2.261671 GCCGTCACACTGATCGGT 59.738 61.111 0.00 0.00 40.55 4.69
519 532 2.509336 GGCCGTCACACTGATCGG 60.509 66.667 0.00 0.00 41.01 4.18
520 533 1.807165 CAGGCCGTCACACTGATCG 60.807 63.158 0.00 0.00 34.21 3.69
521 534 2.103042 GCAGGCCGTCACACTGATC 61.103 63.158 0.00 0.00 34.21 2.92
522 535 2.046892 GCAGGCCGTCACACTGAT 60.047 61.111 0.00 0.00 34.21 2.90
523 536 3.545574 TGCAGGCCGTCACACTGA 61.546 61.111 0.00 0.00 34.21 3.41
524 537 3.349006 GTGCAGGCCGTCACACTG 61.349 66.667 20.73 3.77 33.63 3.66
525 538 4.969196 CGTGCAGGCCGTCACACT 62.969 66.667 23.69 0.00 33.03 3.55
526 539 4.961511 TCGTGCAGGCCGTCACAC 62.962 66.667 23.69 17.03 33.03 3.82
527 540 4.662961 CTCGTGCAGGCCGTCACA 62.663 66.667 23.69 13.40 33.03 3.58
550 563 1.219935 GTGGGTGGGTAAGGCGTAG 59.780 63.158 0.00 0.00 0.00 3.51
551 564 2.292559 GGTGGGTGGGTAAGGCGTA 61.293 63.158 0.00 0.00 0.00 4.42
552 565 2.752036 TAGGTGGGTGGGTAAGGCGT 62.752 60.000 0.00 0.00 0.00 5.68
553 566 1.991167 TAGGTGGGTGGGTAAGGCG 60.991 63.158 0.00 0.00 0.00 5.52
554 567 1.605992 GTAGGTGGGTGGGTAAGGC 59.394 63.158 0.00 0.00 0.00 4.35
555 568 1.902556 CGTAGGTGGGTGGGTAAGG 59.097 63.158 0.00 0.00 0.00 2.69
556 569 1.219935 GCGTAGGTGGGTGGGTAAG 59.780 63.158 0.00 0.00 0.00 2.34
557 570 1.535930 TGCGTAGGTGGGTGGGTAA 60.536 57.895 0.00 0.00 0.00 2.85
558 571 1.985662 CTGCGTAGGTGGGTGGGTA 60.986 63.158 0.00 0.00 0.00 3.69
559 572 3.319198 CTGCGTAGGTGGGTGGGT 61.319 66.667 0.00 0.00 0.00 4.51
560 573 3.000819 TCTGCGTAGGTGGGTGGG 61.001 66.667 0.00 0.00 0.00 4.61
561 574 2.579201 CTCTGCGTAGGTGGGTGG 59.421 66.667 0.00 0.00 0.00 4.61
562 575 2.125512 GCTCTGCGTAGGTGGGTG 60.126 66.667 0.00 0.00 0.00 4.61
573 586 3.857854 CGTGTGATGCCGCTCTGC 61.858 66.667 0.00 0.00 0.00 4.26
574 587 0.249031 TATCGTGTGATGCCGCTCTG 60.249 55.000 0.00 0.00 35.99 3.35
575 588 0.249073 GTATCGTGTGATGCCGCTCT 60.249 55.000 0.00 0.00 35.99 4.09
576 589 1.215655 GGTATCGTGTGATGCCGCTC 61.216 60.000 0.00 0.00 45.63 5.03
577 590 1.227263 GGTATCGTGTGATGCCGCT 60.227 57.895 0.00 0.00 45.63 5.52
578 591 3.319904 GGTATCGTGTGATGCCGC 58.680 61.111 0.00 0.00 45.63 6.53
581 594 1.762222 GCGGTGGTATCGTGTGATGC 61.762 60.000 0.00 0.00 35.99 3.91
582 595 0.459411 TGCGGTGGTATCGTGTGATG 60.459 55.000 0.00 0.00 35.99 3.07
583 596 0.459585 GTGCGGTGGTATCGTGTGAT 60.460 55.000 0.00 0.00 38.67 3.06
584 597 1.080366 GTGCGGTGGTATCGTGTGA 60.080 57.895 0.00 0.00 0.00 3.58
585 598 2.441378 CGTGCGGTGGTATCGTGTG 61.441 63.158 0.00 0.00 0.00 3.82
586 599 2.126228 CGTGCGGTGGTATCGTGT 60.126 61.111 0.00 0.00 0.00 4.49
587 600 3.550992 GCGTGCGGTGGTATCGTG 61.551 66.667 0.00 0.00 0.00 4.35
588 601 4.058732 TGCGTGCGGTGGTATCGT 62.059 61.111 0.00 0.00 0.00 3.73
589 602 3.550992 GTGCGTGCGGTGGTATCG 61.551 66.667 0.00 0.00 0.00 2.92
590 603 2.433491 TGTGCGTGCGGTGGTATC 60.433 61.111 0.00 0.00 0.00 2.24
591 604 2.434185 CTGTGCGTGCGGTGGTAT 60.434 61.111 0.00 0.00 0.00 2.73
592 605 4.673298 CCTGTGCGTGCGGTGGTA 62.673 66.667 0.00 0.00 0.00 3.25
594 607 4.673298 TACCTGTGCGTGCGGTGG 62.673 66.667 0.85 0.00 32.36 4.61
595 608 3.112075 CTACCTGTGCGTGCGGTG 61.112 66.667 0.85 0.00 32.36 4.94
596 609 3.569049 GACTACCTGTGCGTGCGGT 62.569 63.158 0.00 0.00 34.86 5.68
597 610 2.809601 GACTACCTGTGCGTGCGG 60.810 66.667 0.00 0.00 0.00 5.69
598 611 3.172575 CGACTACCTGTGCGTGCG 61.173 66.667 0.00 0.00 0.00 5.34
599 612 3.479269 GCGACTACCTGTGCGTGC 61.479 66.667 0.00 0.00 0.00 5.34
600 613 2.809601 GGCGACTACCTGTGCGTG 60.810 66.667 0.00 0.00 0.00 5.34
601 614 2.863346 TTGGCGACTACCTGTGCGT 61.863 57.895 0.00 0.00 0.00 5.24
602 615 2.048597 TTGGCGACTACCTGTGCG 60.049 61.111 0.00 0.00 0.00 5.34
603 616 3.562635 GTTGGCGACTACCTGTGC 58.437 61.111 0.00 0.00 0.00 4.57
609 622 6.864342 ACTATATATCATGGTTGGCGACTAC 58.136 40.000 4.59 0.00 35.18 2.73
610 623 7.832685 AGTACTATATATCATGGTTGGCGACTA 59.167 37.037 4.59 0.00 0.00 2.59
611 624 6.663953 AGTACTATATATCATGGTTGGCGACT 59.336 38.462 4.59 0.00 0.00 4.18
612 625 6.864342 AGTACTATATATCATGGTTGGCGAC 58.136 40.000 0.00 0.00 0.00 5.19
613 626 6.096423 GGAGTACTATATATCATGGTTGGCGA 59.904 42.308 0.00 0.00 0.00 5.54
614 627 6.273825 GGAGTACTATATATCATGGTTGGCG 58.726 44.000 0.00 0.00 0.00 5.69
615 628 6.384305 AGGGAGTACTATATATCATGGTTGGC 59.616 42.308 0.00 0.00 0.00 4.52
616 629 7.070074 GGAGGGAGTACTATATATCATGGTTGG 59.930 44.444 0.00 0.00 0.00 3.77
617 630 7.619698 TGGAGGGAGTACTATATATCATGGTTG 59.380 40.741 0.00 0.00 0.00 3.77
618 631 7.719424 TGGAGGGAGTACTATATATCATGGTT 58.281 38.462 0.00 0.00 0.00 3.67
619 632 7.298678 TGGAGGGAGTACTATATATCATGGT 57.701 40.000 0.00 0.00 0.00 3.55
620 633 8.007153 TGATGGAGGGAGTACTATATATCATGG 58.993 40.741 0.00 0.00 0.00 3.66
621 634 8.855110 GTGATGGAGGGAGTACTATATATCATG 58.145 40.741 0.00 0.00 0.00 3.07
622 635 8.569596 TGTGATGGAGGGAGTACTATATATCAT 58.430 37.037 0.00 0.00 0.00 2.45
623 636 7.939781 TGTGATGGAGGGAGTACTATATATCA 58.060 38.462 0.00 0.00 0.00 2.15
624 637 8.056400 ACTGTGATGGAGGGAGTACTATATATC 58.944 40.741 0.00 0.00 0.00 1.63
625 638 7.945278 ACTGTGATGGAGGGAGTACTATATAT 58.055 38.462 0.00 0.00 0.00 0.86
626 639 7.344599 ACTGTGATGGAGGGAGTACTATATA 57.655 40.000 0.00 0.00 0.00 0.86
627 640 6.220881 ACTGTGATGGAGGGAGTACTATAT 57.779 41.667 0.00 0.00 0.00 0.86
628 641 5.664815 ACTGTGATGGAGGGAGTACTATA 57.335 43.478 0.00 0.00 0.00 1.31
629 642 4.544564 ACTGTGATGGAGGGAGTACTAT 57.455 45.455 0.00 0.00 0.00 2.12
630 643 5.664815 ATACTGTGATGGAGGGAGTACTA 57.335 43.478 0.00 0.00 0.00 1.82
631 644 2.930109 ACTGTGATGGAGGGAGTACT 57.070 50.000 0.00 0.00 0.00 2.73
632 645 6.603997 CCTATATACTGTGATGGAGGGAGTAC 59.396 46.154 0.00 0.00 0.00 2.73
771 785 4.221482 GGGAGGCAAAAGAATTCATGTTCT 59.779 41.667 8.44 6.06 40.05 3.01
846 860 2.903357 CTGCATGCGGGAGTAGGT 59.097 61.111 19.33 0.00 0.00 3.08
1029 1043 2.110967 CACCTCCTTCATGGCAGCG 61.111 63.158 0.00 0.00 35.26 5.18
1755 2330 5.764686 TGAACTCAACATGATTTGTACTGCT 59.235 36.000 0.00 0.00 37.68 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.