Multiple sequence alignment - TraesCS7B01G249700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G249700 chr7B 100.000 3162 0 0 1 3162 461208371 461205210 0.000000e+00 5840.0
1 TraesCS7B01G249700 chr7B 74.792 480 92 20 2617 3079 42753199 42753666 4.160000e-44 189.0
2 TraesCS7B01G249700 chr7D 90.504 1569 74 26 836 2356 444353578 444352037 0.000000e+00 2002.0
3 TraesCS7B01G249700 chr7D 81.671 742 70 34 38 725 318861427 318862156 9.910000e-155 556.0
4 TraesCS7B01G249700 chr7D 89.655 203 15 5 2356 2557 444352001 444351804 1.460000e-63 254.0
5 TraesCS7B01G249700 chr7D 75.143 350 67 12 2811 3148 427005715 427005374 2.540000e-31 147.0
6 TraesCS7B01G249700 chr4D 98.570 839 12 0 1 839 498002542 498003380 0.000000e+00 1483.0
7 TraesCS7B01G249700 chr6B 98.093 839 16 0 1 839 6472845 6472007 0.000000e+00 1461.0
8 TraesCS7B01G249700 chr6B 75.058 433 82 21 2614 3032 173027507 173027087 9.010000e-41 178.0
9 TraesCS7B01G249700 chr6B 75.595 336 57 18 2616 2936 720005464 720005789 3.290000e-30 143.0
10 TraesCS7B01G249700 chr1B 97.974 839 17 0 1 839 22116301 22117139 0.000000e+00 1456.0
11 TraesCS7B01G249700 chr3B 97.974 839 16 1 1 839 662511956 662512793 0.000000e+00 1454.0
12 TraesCS7B01G249700 chr3B 77.444 266 46 9 2617 2880 738756431 738756684 2.540000e-31 147.0
13 TraesCS7B01G249700 chr3B 74.652 359 62 22 2617 2959 622091811 622091466 7.120000e-27 132.0
14 TraesCS7B01G249700 chr3B 94.118 34 2 0 812 845 662510613 662510580 6.000000e-03 52.8
15 TraesCS7B01G249700 chr7A 98.269 809 14 0 31 839 611913241 611914049 0.000000e+00 1417.0
16 TraesCS7B01G249700 chr7A 82.236 1154 103 49 839 1967 495539951 495538875 0.000000e+00 902.0
17 TraesCS7B01G249700 chr7A 86.157 549 36 10 2001 2529 495538805 495538277 9.910000e-155 556.0
18 TraesCS7B01G249700 chr6A 96.934 848 17 1 1 839 117402208 117403055 0.000000e+00 1415.0
19 TraesCS7B01G249700 chr6D 95.680 787 13 1 53 839 87580168 87579403 0.000000e+00 1245.0
20 TraesCS7B01G249700 chr6D 94.444 36 1 1 812 846 87582479 87582514 2.000000e-03 54.7
21 TraesCS7B01G249700 chr2D 77.105 1354 134 89 1028 2320 588677561 588676323 3.460000e-174 621.0
22 TraesCS7B01G249700 chr2D 76.091 573 103 27 2607 3160 143255753 143255196 5.200000e-68 268.0
23 TraesCS7B01G249700 chr2B 77.294 1286 123 94 1028 2253 712318300 712319476 4.510000e-168 601.0
24 TraesCS7B01G249700 chr2A 76.923 1261 164 77 1028 2253 723360021 723358853 1.620000e-167 599.0
25 TraesCS7B01G249700 chr1A 85.794 535 37 11 56 555 216492393 216492923 6.010000e-147 531.0
26 TraesCS7B01G249700 chr5A 74.447 407 79 17 2708 3095 449252445 449252845 5.460000e-33 152.0
27 TraesCS7B01G249700 chr4B 73.289 453 89 22 2637 3073 102412135 102412571 1.530000e-28 137.0
28 TraesCS7B01G249700 chr5D 77.489 231 38 10 2646 2874 434574979 434574761 3.310000e-25 126.0
29 TraesCS7B01G249700 chr5D 76.695 236 40 10 2616 2848 512762591 512762368 1.990000e-22 117.0
30 TraesCS7B01G249700 chr4A 81.633 147 25 1 2709 2855 658070781 658070637 1.540000e-23 121.0
31 TraesCS7B01G249700 chr4A 73.856 306 55 15 2657 2957 601285345 601285630 7.220000e-17 99.0
32 TraesCS7B01G249700 chr3D 87.143 70 7 1 3033 3102 29645781 29645848 9.400000e-11 78.7
33 TraesCS7B01G249700 chr5B 80.357 112 9 10 2646 2756 548123012 548122913 4.370000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G249700 chr7B 461205210 461208371 3161 True 5840 5840 100.0000 1 3162 1 chr7B.!!$R1 3161
1 TraesCS7B01G249700 chr7D 444351804 444353578 1774 True 1128 2002 90.0795 836 2557 2 chr7D.!!$R2 1721
2 TraesCS7B01G249700 chr7D 318861427 318862156 729 False 556 556 81.6710 38 725 1 chr7D.!!$F1 687
3 TraesCS7B01G249700 chr4D 498002542 498003380 838 False 1483 1483 98.5700 1 839 1 chr4D.!!$F1 838
4 TraesCS7B01G249700 chr6B 6472007 6472845 838 True 1461 1461 98.0930 1 839 1 chr6B.!!$R1 838
5 TraesCS7B01G249700 chr1B 22116301 22117139 838 False 1456 1456 97.9740 1 839 1 chr1B.!!$F1 838
6 TraesCS7B01G249700 chr3B 662511956 662512793 837 False 1454 1454 97.9740 1 839 1 chr3B.!!$F1 838
7 TraesCS7B01G249700 chr7A 611913241 611914049 808 False 1417 1417 98.2690 31 839 1 chr7A.!!$F1 808
8 TraesCS7B01G249700 chr7A 495538277 495539951 1674 True 729 902 84.1965 839 2529 2 chr7A.!!$R1 1690
9 TraesCS7B01G249700 chr6A 117402208 117403055 847 False 1415 1415 96.9340 1 839 1 chr6A.!!$F1 838
10 TraesCS7B01G249700 chr6D 87579403 87580168 765 True 1245 1245 95.6800 53 839 1 chr6D.!!$R1 786
11 TraesCS7B01G249700 chr2D 588676323 588677561 1238 True 621 621 77.1050 1028 2320 1 chr2D.!!$R2 1292
12 TraesCS7B01G249700 chr2D 143255196 143255753 557 True 268 268 76.0910 2607 3160 1 chr2D.!!$R1 553
13 TraesCS7B01G249700 chr2B 712318300 712319476 1176 False 601 601 77.2940 1028 2253 1 chr2B.!!$F1 1225
14 TraesCS7B01G249700 chr2A 723358853 723360021 1168 True 599 599 76.9230 1028 2253 1 chr2A.!!$R1 1225
15 TraesCS7B01G249700 chr1A 216492393 216492923 530 False 531 531 85.7940 56 555 1 chr1A.!!$F1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 1013 0.036732 CTCCAGTGGCCTTGTGCTAA 59.963 55.0 3.51 0.0 40.92 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2704 3038 0.103937 GCTTCGGTGAGAGAGGGATG 59.896 60.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
252 277 0.624254 TAGGAGGAGGAAGACGCTCA 59.376 55.000 0.00 0.00 0.00 4.26
412 440 4.045771 CTGCACATTGCTGCGGCA 62.046 61.111 18.37 18.37 45.31 5.69
448 476 1.412937 GGAGGGAGGAGAGAAGATGCT 60.413 57.143 0.00 0.00 0.00 3.79
451 479 1.836802 GGGAGGAGAGAAGATGCTGTT 59.163 52.381 0.00 0.00 0.00 3.16
886 968 4.399395 CCTCGCCTTGCTGCTCCA 62.399 66.667 0.00 0.00 0.00 3.86
887 969 2.124819 CTCGCCTTGCTGCTCCAT 60.125 61.111 0.00 0.00 0.00 3.41
888 970 1.144716 CTCGCCTTGCTGCTCCATA 59.855 57.895 0.00 0.00 0.00 2.74
916 998 3.402681 GGCTGGCTGGCTACTCCA 61.403 66.667 10.74 0.00 44.18 3.86
931 1013 0.036732 CTCCAGTGGCCTTGTGCTAA 59.963 55.000 3.51 0.00 40.92 3.09
954 1036 1.202582 CGGGAGAGTGTTCCAGTGTAG 59.797 57.143 0.00 0.00 39.09 2.74
976 1058 2.171940 GCGTGCTTGTGCTTCGAG 59.828 61.111 0.00 0.00 40.48 4.04
987 1069 2.497928 GCTTCGAGCGACGTACTGC 61.498 63.158 0.00 0.00 43.13 4.40
988 1070 1.154282 CTTCGAGCGACGTACTGCA 60.154 57.895 9.25 0.00 43.13 4.41
1140 1222 0.032615 AGATCCTCCACGCCTTCTCT 60.033 55.000 0.00 0.00 0.00 3.10
1205 1329 3.371063 GAGGTCCTCGGACGTGCA 61.371 66.667 15.30 0.00 45.41 4.57
1206 1330 3.628280 GAGGTCCTCGGACGTGCAC 62.628 68.421 15.30 6.82 45.41 4.57
1255 1379 3.403558 GGAAGAGGAAGCCCGCCT 61.404 66.667 0.00 0.00 38.81 5.52
1325 1455 3.044156 AGGCTCCAGCTCATGATTCTTA 58.956 45.455 0.00 0.00 41.70 2.10
1326 1456 3.651904 AGGCTCCAGCTCATGATTCTTAT 59.348 43.478 0.00 0.00 41.70 1.73
1329 1459 6.671340 AGGCTCCAGCTCATGATTCTTATATA 59.329 38.462 0.00 0.00 41.70 0.86
1331 1461 8.646004 GGCTCCAGCTCATGATTCTTATATATA 58.354 37.037 0.00 0.00 41.70 0.86
1447 1610 2.047274 ACCCAGCAATCGTCCGTG 60.047 61.111 0.00 0.00 0.00 4.94
1544 1731 1.612463 AGCACTCGAGGTACGTTTCTT 59.388 47.619 18.41 0.00 43.13 2.52
1549 1736 1.542915 TCGAGGTACGTTTCTTCCCTG 59.457 52.381 0.00 0.00 43.13 4.45
1550 1737 1.723220 GAGGTACGTTTCTTCCCTGC 58.277 55.000 0.00 0.00 0.00 4.85
1551 1738 0.323957 AGGTACGTTTCTTCCCTGCC 59.676 55.000 0.00 0.00 0.00 4.85
1552 1739 0.675837 GGTACGTTTCTTCCCTGCCC 60.676 60.000 0.00 0.00 0.00 5.36
1553 1740 0.323957 GTACGTTTCTTCCCTGCCCT 59.676 55.000 0.00 0.00 0.00 5.19
1563 1750 1.009997 TCCCTGCCCTCCAATGATTT 58.990 50.000 0.00 0.00 0.00 2.17
1564 1751 1.362237 TCCCTGCCCTCCAATGATTTT 59.638 47.619 0.00 0.00 0.00 1.82
1611 1801 1.134340 CCACCAAATGGGATGGCAATG 60.134 52.381 4.17 0.00 45.95 2.82
1614 1804 1.134340 CCAAATGGGATGGCAATGGTG 60.134 52.381 0.00 0.00 40.01 4.17
1615 1805 4.955065 CCAAATGGGATGGCAATGGTGC 62.955 54.545 0.00 0.00 45.10 5.01
1645 1836 1.665679 CGTGTGAACTCTGCAACAACT 59.334 47.619 0.00 0.00 0.00 3.16
1656 1847 1.422024 TGCAACAACTAACCCTGCCTA 59.578 47.619 0.00 0.00 31.92 3.93
1675 1866 9.178758 CCTGCCTACAATTAATATTAATCCCTC 57.821 37.037 18.72 8.76 32.46 4.30
1676 1867 8.786826 TGCCTACAATTAATATTAATCCCTCG 57.213 34.615 18.72 9.55 32.46 4.63
1677 1868 8.598916 TGCCTACAATTAATATTAATCCCTCGA 58.401 33.333 18.72 4.02 32.46 4.04
1716 1907 0.250252 TCAACTGACAAGCGCCATGA 60.250 50.000 16.76 1.23 0.00 3.07
2190 2475 3.319405 AGAGTACCTTGATGACTATGCGG 59.681 47.826 0.00 0.00 0.00 5.69
2305 2594 1.308047 ATCGAAATAATGGCTGCGCA 58.692 45.000 10.98 10.98 0.00 6.09
2320 2617 0.775273 GCGCAGATCTTCGATCTTCG 59.225 55.000 19.13 17.36 42.10 3.79
2417 2750 6.681729 AGTTGGGTATTGTCTTAGTTGAGA 57.318 37.500 0.00 0.00 0.00 3.27
2423 2756 7.399191 TGGGTATTGTCTTAGTTGAGACTATGT 59.601 37.037 10.68 0.00 44.99 2.29
2469 2802 8.731275 TGAGAAGTGAACAGAAATTTTCAGTA 57.269 30.769 11.53 0.00 34.87 2.74
2485 2818 7.517614 TTTTCAGTATATTTTGCACTCCACA 57.482 32.000 0.00 0.00 0.00 4.17
2532 2865 5.620879 GCTTCATGTTTCTGAACTTCCCATC 60.621 44.000 0.00 0.00 36.70 3.51
2533 2866 4.335416 TCATGTTTCTGAACTTCCCATCC 58.665 43.478 0.00 0.00 36.70 3.51
2534 2867 4.043310 TCATGTTTCTGAACTTCCCATCCT 59.957 41.667 0.00 0.00 36.70 3.24
2535 2868 4.453480 TGTTTCTGAACTTCCCATCCTT 57.547 40.909 0.00 0.00 36.70 3.36
2536 2869 5.576563 TGTTTCTGAACTTCCCATCCTTA 57.423 39.130 0.00 0.00 36.70 2.69
2537 2870 5.560724 TGTTTCTGAACTTCCCATCCTTAG 58.439 41.667 0.00 0.00 36.70 2.18
2543 2876 5.947663 TGAACTTCCCATCCTTAGTTTGAA 58.052 37.500 0.00 0.00 31.41 2.69
2557 2890 9.273137 TCCTTAGTTTGAAGAATTATCCTCTCT 57.727 33.333 0.00 0.00 0.00 3.10
2558 2891 9.898152 CCTTAGTTTGAAGAATTATCCTCTCTT 57.102 33.333 0.00 0.00 32.11 2.85
2601 2934 9.350357 CTTTTGATATATTTGTCATGCTATGGC 57.650 33.333 0.00 0.00 39.26 4.40
2644 2978 8.833231 ATAATTAATCCATGTTCGTAGACCAG 57.167 34.615 0.00 0.00 28.16 4.00
2648 2982 2.688446 TCCATGTTCGTAGACCAGCTAG 59.312 50.000 0.00 0.00 28.16 3.42
2652 2986 0.731417 TTCGTAGACCAGCTAGCGAC 59.269 55.000 9.55 2.35 34.63 5.19
2655 2989 0.945813 GTAGACCAGCTAGCGACGAT 59.054 55.000 9.55 0.00 0.00 3.73
2661 2995 2.120232 CCAGCTAGCGACGATTACAAG 58.880 52.381 9.55 0.00 0.00 3.16
2679 3013 2.260869 GCACTGGAGCAAGCCGAAA 61.261 57.895 0.00 0.00 0.00 3.46
2697 3031 3.945434 GCATGCCGCCGTCATCAG 61.945 66.667 6.36 0.00 32.94 2.90
2702 3036 3.536917 CCGCCGTCATCAGCCCTA 61.537 66.667 0.00 0.00 0.00 3.53
2704 3038 1.373497 CGCCGTCATCAGCCCTATC 60.373 63.158 0.00 0.00 0.00 2.08
2705 3039 1.748403 GCCGTCATCAGCCCTATCA 59.252 57.895 0.00 0.00 0.00 2.15
2706 3040 0.322975 GCCGTCATCAGCCCTATCAT 59.677 55.000 0.00 0.00 0.00 2.45
2707 3041 1.674221 GCCGTCATCAGCCCTATCATC 60.674 57.143 0.00 0.00 0.00 2.92
2708 3042 1.066573 CCGTCATCAGCCCTATCATCC 60.067 57.143 0.00 0.00 0.00 3.51
2709 3043 1.066573 CGTCATCAGCCCTATCATCCC 60.067 57.143 0.00 0.00 0.00 3.85
2710 3044 2.264455 GTCATCAGCCCTATCATCCCT 58.736 52.381 0.00 0.00 0.00 4.20
2711 3045 2.235898 GTCATCAGCCCTATCATCCCTC 59.764 54.545 0.00 0.00 0.00 4.30
2712 3046 2.113233 TCATCAGCCCTATCATCCCTCT 59.887 50.000 0.00 0.00 0.00 3.69
2713 3047 2.317371 TCAGCCCTATCATCCCTCTC 57.683 55.000 0.00 0.00 0.00 3.20
2718 3052 2.534990 CCCTATCATCCCTCTCTCACC 58.465 57.143 0.00 0.00 0.00 4.02
2720 3054 2.224892 CCTATCATCCCTCTCTCACCGA 60.225 54.545 0.00 0.00 0.00 4.69
2724 3058 1.045911 ATCCCTCTCTCACCGAAGCC 61.046 60.000 0.00 0.00 0.00 4.35
2736 3070 1.574428 CGAAGCCGGGTCAAACTTG 59.426 57.895 6.62 0.00 0.00 3.16
2740 3074 1.299850 GCCGGGTCAAACTTGTTGC 60.300 57.895 2.18 0.00 0.00 4.17
2742 3076 0.457851 CCGGGTCAAACTTGTTGCAA 59.542 50.000 0.00 0.00 0.00 4.08
2752 3086 5.588246 TCAAACTTGTTGCAATAGACAGTCA 59.412 36.000 15.83 0.00 0.00 3.41
2753 3087 6.094742 TCAAACTTGTTGCAATAGACAGTCAA 59.905 34.615 15.83 6.61 0.00 3.18
2760 3094 4.237724 TGCAATAGACAGTCAAGAAGTCG 58.762 43.478 2.66 0.00 37.36 4.18
2772 3106 4.506654 GTCAAGAAGTCGTTGTGCTAAGAA 59.493 41.667 0.00 0.00 0.00 2.52
2777 3111 2.038557 AGTCGTTGTGCTAAGAACCCAT 59.961 45.455 0.00 0.00 0.00 4.00
2778 3112 2.812011 GTCGTTGTGCTAAGAACCCATT 59.188 45.455 0.00 0.00 0.00 3.16
2779 3113 3.998341 GTCGTTGTGCTAAGAACCCATTA 59.002 43.478 0.00 0.00 0.00 1.90
2785 3119 4.042311 TGTGCTAAGAACCCATTAGACCAA 59.958 41.667 0.00 0.00 32.96 3.67
2787 3121 4.042311 TGCTAAGAACCCATTAGACCAACA 59.958 41.667 0.00 0.00 32.96 3.33
2795 3129 3.338249 CCATTAGACCAACACACCAGAG 58.662 50.000 0.00 0.00 0.00 3.35
2798 3132 0.767375 AGACCAACACACCAGAGCAT 59.233 50.000 0.00 0.00 0.00 3.79
2804 3138 0.473755 ACACACCAGAGCATCAACCA 59.526 50.000 0.00 0.00 37.82 3.67
2806 3140 2.165167 CACACCAGAGCATCAACCATT 58.835 47.619 0.00 0.00 37.82 3.16
2835 3169 7.324856 CGATGAAGTGAAGTATAGATCGAAAGG 59.675 40.741 0.00 0.00 34.75 3.11
2848 3182 5.914085 GATCGAAAGGATCCAACATGTAG 57.086 43.478 15.82 0.00 44.86 2.74
2854 3188 5.441718 AAGGATCCAACATGTAGACACAT 57.558 39.130 15.82 0.00 46.58 3.21
2871 3205 9.562583 GTAGACACATGAACTTAAACAAACAAA 57.437 29.630 0.00 0.00 0.00 2.83
2874 3208 9.134734 GACACATGAACTTAAACAAACAAAGAA 57.865 29.630 0.00 0.00 0.00 2.52
2880 3224 8.030106 TGAACTTAAACAAACAAAGAACGGATT 58.970 29.630 0.00 0.00 0.00 3.01
2881 3225 7.980742 ACTTAAACAAACAAAGAACGGATTC 57.019 32.000 0.00 0.00 34.78 2.52
2883 3227 8.194769 ACTTAAACAAACAAAGAACGGATTCAT 58.805 29.630 0.00 0.00 37.29 2.57
2884 3228 8.568732 TTAAACAAACAAAGAACGGATTCATC 57.431 30.769 0.00 0.00 37.29 2.92
2885 3229 5.766150 ACAAACAAAGAACGGATTCATCA 57.234 34.783 0.00 0.00 37.29 3.07
2891 3235 5.530915 ACAAAGAACGGATTCATCAAAGACA 59.469 36.000 0.00 0.00 37.29 3.41
2893 3237 5.869753 AGAACGGATTCATCAAAGACAAG 57.130 39.130 0.00 0.00 37.29 3.16
2900 3244 2.143122 TCATCAAAGACAAGCACCGAC 58.857 47.619 0.00 0.00 0.00 4.79
2907 3251 0.389948 GACAAGCACCGACCGAATCT 60.390 55.000 0.00 0.00 0.00 2.40
2936 3281 1.080434 GCGAGAGACACACCTCCAC 60.080 63.158 0.00 0.00 33.76 4.02
2937 3282 1.806461 GCGAGAGACACACCTCCACA 61.806 60.000 0.00 0.00 33.76 4.17
2939 3284 0.318762 GAGAGACACACCTCCACACC 59.681 60.000 0.00 0.00 33.76 4.16
2940 3285 1.122019 AGAGACACACCTCCACACCC 61.122 60.000 0.00 0.00 33.76 4.61
2941 3286 1.074471 AGACACACCTCCACACCCT 60.074 57.895 0.00 0.00 0.00 4.34
2944 3289 0.629058 ACACACCTCCACACCCTTTT 59.371 50.000 0.00 0.00 0.00 2.27
2945 3290 1.847737 ACACACCTCCACACCCTTTTA 59.152 47.619 0.00 0.00 0.00 1.52
2946 3291 2.227194 CACACCTCCACACCCTTTTAC 58.773 52.381 0.00 0.00 0.00 2.01
2961 3308 3.924686 CCTTTTACGACGCTAGACACATT 59.075 43.478 0.00 0.00 0.00 2.71
2963 3310 5.229469 CCTTTTACGACGCTAGACACATTAG 59.771 44.000 0.00 0.00 0.00 1.73
2967 3314 2.223272 CGACGCTAGACACATTAGCAGA 60.223 50.000 0.00 0.00 42.85 4.26
2976 3324 1.077787 CATTAGCAGAACGGGGCCA 60.078 57.895 4.39 0.00 0.00 5.36
2977 3325 0.466189 CATTAGCAGAACGGGGCCAT 60.466 55.000 4.39 0.00 0.00 4.40
2979 3327 3.697439 TAGCAGAACGGGGCCATGC 62.697 63.158 4.39 7.34 37.15 4.06
2989 3337 2.514824 GGCCATGCGGAGAGAACC 60.515 66.667 0.00 0.00 0.00 3.62
2991 3339 1.686325 GGCCATGCGGAGAGAACCTA 61.686 60.000 0.00 0.00 0.00 3.08
2995 3343 3.134458 CCATGCGGAGAGAACCTAATTC 58.866 50.000 0.00 0.00 37.62 2.17
2999 3347 3.964688 TGCGGAGAGAACCTAATTCCATA 59.035 43.478 0.00 0.00 38.16 2.74
3000 3348 4.593206 TGCGGAGAGAACCTAATTCCATAT 59.407 41.667 0.00 0.00 38.16 1.78
3009 3358 7.740805 AGAACCTAATTCCATATCAAGGAGTC 58.259 38.462 0.00 0.00 38.16 3.36
3017 3366 0.968901 TATCAAGGAGTCGCCACCGT 60.969 55.000 0.00 0.00 40.02 4.83
3021 3370 4.477975 GGAGTCGCCACCGTCTCG 62.478 72.222 4.77 0.00 46.04 4.04
3025 3374 2.046988 TCGCCACCGTCTCGTCTA 60.047 61.111 0.00 0.00 35.54 2.59
3026 3375 2.099831 CGCCACCGTCTCGTCTAC 59.900 66.667 0.00 0.00 0.00 2.59
3031 3380 1.162698 CACCGTCTCGTCTACCTGAA 58.837 55.000 0.00 0.00 0.00 3.02
3032 3381 1.135746 CACCGTCTCGTCTACCTGAAC 60.136 57.143 0.00 0.00 0.00 3.18
3034 3383 1.538512 CCGTCTCGTCTACCTGAACAA 59.461 52.381 0.00 0.00 0.00 2.83
3043 3392 4.025979 CGTCTACCTGAACAAGACACAAAC 60.026 45.833 0.00 0.00 39.69 2.93
3044 3393 4.272748 GTCTACCTGAACAAGACACAAACC 59.727 45.833 0.00 0.00 39.54 3.27
3051 3400 4.095185 TGAACAAGACACAAACCCTAAACG 59.905 41.667 0.00 0.00 0.00 3.60
3058 3407 4.457466 ACACAAACCCTAAACGAACTCAT 58.543 39.130 0.00 0.00 0.00 2.90
3059 3408 5.613329 ACACAAACCCTAAACGAACTCATA 58.387 37.500 0.00 0.00 0.00 2.15
3066 3415 7.571080 ACCCTAAACGAACTCATAAAAACAA 57.429 32.000 0.00 0.00 0.00 2.83
3067 3416 8.173542 ACCCTAAACGAACTCATAAAAACAAT 57.826 30.769 0.00 0.00 0.00 2.71
3068 3417 8.635328 ACCCTAAACGAACTCATAAAAACAATT 58.365 29.630 0.00 0.00 0.00 2.32
3092 3441 0.824759 ACGAAGAAAGATCCCTCCCG 59.175 55.000 0.00 0.00 0.00 5.14
3093 3442 0.824759 CGAAGAAAGATCCCTCCCGT 59.175 55.000 0.00 0.00 0.00 5.28
3095 3444 1.139256 GAAGAAAGATCCCTCCCGTCC 59.861 57.143 0.00 0.00 0.00 4.79
3096 3445 1.043673 AGAAAGATCCCTCCCGTCCG 61.044 60.000 0.00 0.00 0.00 4.79
3118 3467 4.428845 GACCGAGGTCCACCACTA 57.571 61.111 11.07 0.00 39.08 2.74
3126 3475 1.078823 AGGTCCACCACTACTCCATGA 59.921 52.381 0.00 0.00 38.89 3.07
3127 3476 2.119495 GGTCCACCACTACTCCATGAT 58.881 52.381 0.00 0.00 35.64 2.45
3137 3486 0.833834 ACTCCATGATCCTAGGGCCG 60.834 60.000 9.46 0.00 0.00 6.13
3138 3487 2.177594 CTCCATGATCCTAGGGCCGC 62.178 65.000 9.46 0.00 0.00 6.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 2.032634 GGCGTGATCTCGTTTGGCA 61.033 57.895 17.55 0.00 0.00 4.92
111 121 0.605589 GTACAGGCAGCGGAAGGTTT 60.606 55.000 0.00 0.00 41.81 3.27
412 440 1.684386 CTCCTCTCTCCAATGGCGCT 61.684 60.000 7.64 0.00 0.00 5.92
448 476 1.121378 TGGAGGGACACGTACAAACA 58.879 50.000 0.00 0.00 0.00 2.83
451 479 0.528924 CGATGGAGGGACACGTACAA 59.471 55.000 0.00 0.00 0.00 2.41
810 892 3.764434 CTCCATCACAGTATATAGGGCGT 59.236 47.826 0.00 0.00 0.00 5.68
884 966 2.877300 GCCAGCCAGTGATATGGTATGG 60.877 54.545 12.23 12.23 45.18 2.74
885 967 2.039480 AGCCAGCCAGTGATATGGTATG 59.961 50.000 9.19 0.00 42.75 2.39
886 968 2.039480 CAGCCAGCCAGTGATATGGTAT 59.961 50.000 9.19 0.00 42.75 2.73
887 969 1.417517 CAGCCAGCCAGTGATATGGTA 59.582 52.381 9.19 0.00 42.75 3.25
888 970 0.182061 CAGCCAGCCAGTGATATGGT 59.818 55.000 9.19 0.00 42.75 3.55
916 998 1.237285 CGCTTTAGCACAAGGCCACT 61.237 55.000 5.01 0.00 46.50 4.00
931 1013 1.122019 ACTGGAACACTCTCCCGCTT 61.122 55.000 0.00 0.00 34.22 4.68
954 1036 0.110644 GAAGCACAAGCACGCAGTAC 60.111 55.000 0.00 0.00 41.61 2.73
976 1058 0.167470 TACAGTCTGCAGTACGTCGC 59.833 55.000 14.67 0.00 0.00 5.19
987 1069 4.402474 TCCATGGACATGTACTACAGTCTG 59.598 45.833 11.44 0.00 37.11 3.51
988 1070 4.610333 TCCATGGACATGTACTACAGTCT 58.390 43.478 11.44 0.00 37.11 3.24
1000 1082 0.914417 AACGGGGTCTCCATGGACAT 60.914 55.000 11.44 0.00 37.91 3.06
1025 1107 1.751351 TGATCAGGTCATCCGTCACTC 59.249 52.381 0.00 0.00 39.05 3.51
1026 1108 1.852633 TGATCAGGTCATCCGTCACT 58.147 50.000 0.00 0.00 39.05 3.41
1102 1184 4.148825 GTCCACGATGAGGCCGCT 62.149 66.667 8.34 0.00 0.00 5.52
1107 1189 0.390860 GGATCTGGTCCACGATGAGG 59.609 60.000 1.02 0.00 46.96 3.86
1205 1329 4.039357 CGTCGGTGACCTCGCTGT 62.039 66.667 0.00 0.00 34.51 4.40
1206 1330 4.778415 CCGTCGGTGACCTCGCTG 62.778 72.222 2.08 0.00 0.00 5.18
1278 1408 4.168291 CTTCTCCGGCAGGCCCTC 62.168 72.222 0.00 0.00 37.47 4.30
1332 1462 8.410141 GCAGTTAATTAGTGAGAGAGACATACT 58.590 37.037 1.97 0.00 0.00 2.12
1333 1463 8.191446 TGCAGTTAATTAGTGAGAGAGACATAC 58.809 37.037 1.97 0.00 0.00 2.39
1373 1533 2.230508 ACATCCATTAGTCACGTCACGT 59.769 45.455 0.00 0.00 42.36 4.49
1413 1576 0.597377 GGTCCTGCAACGCCAAAAAG 60.597 55.000 0.00 0.00 0.00 2.27
1447 1610 2.266554 CTCTTCATGCTCTTCGTGACC 58.733 52.381 0.00 0.00 40.23 4.02
1544 1731 1.009997 AAATCATTGGAGGGCAGGGA 58.990 50.000 0.00 0.00 0.00 4.20
1549 1736 6.064717 AGTAGTGATAAAATCATTGGAGGGC 58.935 40.000 0.00 0.00 42.04 5.19
1550 1737 9.799106 ATTAGTAGTGATAAAATCATTGGAGGG 57.201 33.333 0.00 0.00 42.04 4.30
1598 1788 3.959462 GCACCATTGCCATCCCAT 58.041 55.556 0.00 0.00 43.66 4.00
1611 1801 2.264794 CACGTAGGTGGGAGCACC 59.735 66.667 7.69 0.00 45.31 5.01
1620 1810 1.037493 TGCAGAGTTCACACGTAGGT 58.963 50.000 0.00 0.00 0.00 3.08
1625 1816 1.665679 AGTTGTTGCAGAGTTCACACG 59.334 47.619 0.00 0.00 0.00 4.49
1656 1847 7.327761 CGTCGTCGAGGGATTAATATTAATTGT 59.672 37.037 19.30 9.12 39.71 2.71
1676 1867 3.360060 GAGACCCGTCGACGTCGTC 62.360 68.421 31.97 31.97 40.80 4.20
1677 1868 3.418068 GAGACCCGTCGACGTCGT 61.418 66.667 34.40 27.94 40.80 4.34
1716 1907 1.639534 CGGCAGAAACACGTTCGTT 59.360 52.632 0.00 0.00 41.52 3.85
1885 2084 3.626924 AGGTGGTGGAGGACGTGC 61.627 66.667 0.00 0.00 0.00 5.34
1886 2085 2.207229 TCAGGTGGTGGAGGACGTG 61.207 63.158 0.00 0.00 0.00 4.49
2190 2475 3.155167 CACTAGGTCCCCGAGGGC 61.155 72.222 1.76 0.00 43.94 5.19
2305 2594 2.286713 CGCTCACGAAGATCGAAGATCT 60.287 50.000 6.78 6.72 43.74 2.75
2417 2750 5.696724 CACTTCGGAGAGACAAAAACATAGT 59.303 40.000 0.00 0.00 38.43 2.12
2423 2756 4.119862 CAGTCACTTCGGAGAGACAAAAA 58.880 43.478 21.41 0.00 43.40 1.94
2436 2769 4.938080 TCTGTTCACTTCTCAGTCACTTC 58.062 43.478 0.00 0.00 0.00 3.01
2469 2802 2.487762 CGTGGTGTGGAGTGCAAAATAT 59.512 45.455 0.00 0.00 0.00 1.28
2485 2818 8.331730 AGCTAAAATTAACATAAAGTCGTGGT 57.668 30.769 0.00 0.00 0.00 4.16
2524 2857 7.709149 AATTCTTCAAACTAAGGATGGGAAG 57.291 36.000 0.00 0.00 33.41 3.46
2532 2865 9.898152 AAGAGAGGATAATTCTTCAAACTAAGG 57.102 33.333 0.00 0.00 30.59 2.69
2575 2908 9.350357 GCCATAGCATGACAAATATATCAAAAG 57.650 33.333 0.00 0.00 39.53 2.27
2576 2909 8.858094 TGCCATAGCATGACAAATATATCAAAA 58.142 29.630 0.00 0.00 46.52 2.44
2577 2910 8.406730 TGCCATAGCATGACAAATATATCAAA 57.593 30.769 0.00 0.00 46.52 2.69
2578 2911 7.999450 TGCCATAGCATGACAAATATATCAA 57.001 32.000 0.00 0.00 46.52 2.57
2620 2953 6.704493 GCTGGTCTACGAACATGGATTAATTA 59.296 38.462 0.00 0.00 0.00 1.40
2644 2978 1.255600 GTGCTTGTAATCGTCGCTAGC 59.744 52.381 4.06 4.06 0.00 3.42
2648 2982 0.370273 CCAGTGCTTGTAATCGTCGC 59.630 55.000 0.00 0.00 0.00 5.19
2652 2986 1.725641 TGCTCCAGTGCTTGTAATCG 58.274 50.000 0.00 0.00 0.00 3.34
2655 2989 1.238439 GCTTGCTCCAGTGCTTGTAA 58.762 50.000 0.00 0.00 0.00 2.41
2661 2995 2.192608 CTTTCGGCTTGCTCCAGTGC 62.193 60.000 0.00 0.00 0.00 4.40
2679 3013 4.471908 TGATGACGGCGGCATGCT 62.472 61.111 35.92 10.95 45.43 3.79
2687 3021 0.322975 ATGATAGGGCTGATGACGGC 59.677 55.000 0.00 0.00 46.60 5.68
2690 3024 2.235898 GAGGGATGATAGGGCTGATGAC 59.764 54.545 0.00 0.00 0.00 3.06
2697 3031 1.899142 GTGAGAGAGGGATGATAGGGC 59.101 57.143 0.00 0.00 0.00 5.19
2700 3034 3.147553 TCGGTGAGAGAGGGATGATAG 57.852 52.381 0.00 0.00 0.00 2.08
2701 3035 3.491342 CTTCGGTGAGAGAGGGATGATA 58.509 50.000 0.00 0.00 0.00 2.15
2702 3036 2.315176 CTTCGGTGAGAGAGGGATGAT 58.685 52.381 0.00 0.00 0.00 2.45
2704 3038 0.103937 GCTTCGGTGAGAGAGGGATG 59.896 60.000 0.00 0.00 0.00 3.51
2705 3039 1.045911 GGCTTCGGTGAGAGAGGGAT 61.046 60.000 0.00 0.00 0.00 3.85
2706 3040 1.682684 GGCTTCGGTGAGAGAGGGA 60.683 63.158 0.00 0.00 0.00 4.20
2707 3041 2.896443 GGCTTCGGTGAGAGAGGG 59.104 66.667 0.00 0.00 0.00 4.30
2708 3042 2.492090 CGGCTTCGGTGAGAGAGG 59.508 66.667 0.00 0.00 0.00 3.69
2718 3052 1.164041 ACAAGTTTGACCCGGCTTCG 61.164 55.000 0.00 0.00 0.00 3.79
2720 3054 0.744281 CAACAAGTTTGACCCGGCTT 59.256 50.000 0.00 0.00 0.00 4.35
2724 3058 2.507339 ATTGCAACAAGTTTGACCCG 57.493 45.000 0.00 0.00 0.00 5.28
2727 3061 5.821204 ACTGTCTATTGCAACAAGTTTGAC 58.179 37.500 0.00 2.88 0.00 3.18
2728 3062 5.588246 TGACTGTCTATTGCAACAAGTTTGA 59.412 36.000 0.00 0.00 0.00 2.69
2736 3070 5.388890 CGACTTCTTGACTGTCTATTGCAAC 60.389 44.000 0.00 0.00 0.00 4.17
2740 3074 5.692204 ACAACGACTTCTTGACTGTCTATTG 59.308 40.000 9.51 4.07 34.05 1.90
2742 3076 5.223382 CACAACGACTTCTTGACTGTCTAT 58.777 41.667 9.51 0.00 0.00 1.98
2752 3086 3.808174 GGTTCTTAGCACAACGACTTCTT 59.192 43.478 0.00 0.00 0.00 2.52
2753 3087 3.391049 GGTTCTTAGCACAACGACTTCT 58.609 45.455 0.00 0.00 0.00 2.85
2760 3094 4.395231 GGTCTAATGGGTTCTTAGCACAAC 59.605 45.833 0.00 0.00 0.00 3.32
2772 3106 1.777878 TGGTGTGTTGGTCTAATGGGT 59.222 47.619 0.00 0.00 0.00 4.51
2777 3111 1.765904 TGCTCTGGTGTGTTGGTCTAA 59.234 47.619 0.00 0.00 0.00 2.10
2778 3112 1.419381 TGCTCTGGTGTGTTGGTCTA 58.581 50.000 0.00 0.00 0.00 2.59
2779 3113 0.767375 ATGCTCTGGTGTGTTGGTCT 59.233 50.000 0.00 0.00 0.00 3.85
2785 3119 0.473755 TGGTTGATGCTCTGGTGTGT 59.526 50.000 0.00 0.00 0.00 3.72
2787 3121 2.165167 CAATGGTTGATGCTCTGGTGT 58.835 47.619 0.00 0.00 0.00 4.16
2795 3129 0.740149 TCATCGGCAATGGTTGATGC 59.260 50.000 0.00 0.00 38.43 3.91
2798 3132 1.811965 CACTTCATCGGCAATGGTTGA 59.188 47.619 0.00 0.00 35.94 3.18
2804 3138 6.161855 TCTATACTTCACTTCATCGGCAAT 57.838 37.500 0.00 0.00 0.00 3.56
2806 3140 5.562890 CGATCTATACTTCACTTCATCGGCA 60.563 44.000 0.00 0.00 0.00 5.69
2848 3182 8.682128 TCTTTGTTTGTTTAAGTTCATGTGTC 57.318 30.769 0.00 0.00 0.00 3.67
2854 3188 6.910995 TCCGTTCTTTGTTTGTTTAAGTTCA 58.089 32.000 0.00 0.00 0.00 3.18
2859 3193 8.191446 TGATGAATCCGTTCTTTGTTTGTTTAA 58.809 29.630 0.00 0.00 35.33 1.52
2860 3194 7.708051 TGATGAATCCGTTCTTTGTTTGTTTA 58.292 30.769 0.00 0.00 35.33 2.01
2862 3196 6.142818 TGATGAATCCGTTCTTTGTTTGTT 57.857 33.333 0.00 0.00 35.33 2.83
2865 3199 6.918022 GTCTTTGATGAATCCGTTCTTTGTTT 59.082 34.615 0.00 0.00 35.33 2.83
2871 3205 4.154918 GCTTGTCTTTGATGAATCCGTTCT 59.845 41.667 0.00 0.00 35.33 3.01
2874 3208 3.189287 GTGCTTGTCTTTGATGAATCCGT 59.811 43.478 0.00 0.00 0.00 4.69
2880 3224 2.143122 GTCGGTGCTTGTCTTTGATGA 58.857 47.619 0.00 0.00 0.00 2.92
2881 3225 1.197721 GGTCGGTGCTTGTCTTTGATG 59.802 52.381 0.00 0.00 0.00 3.07
2883 3227 0.878523 CGGTCGGTGCTTGTCTTTGA 60.879 55.000 0.00 0.00 0.00 2.69
2884 3228 0.878523 TCGGTCGGTGCTTGTCTTTG 60.879 55.000 0.00 0.00 0.00 2.77
2885 3229 0.179067 TTCGGTCGGTGCTTGTCTTT 60.179 50.000 0.00 0.00 0.00 2.52
2891 3235 1.153823 CGAGATTCGGTCGGTGCTT 60.154 57.895 0.00 0.00 36.00 3.91
2893 3237 3.255379 GCGAGATTCGGTCGGTGC 61.255 66.667 0.34 0.00 40.84 5.01
2920 3265 0.318762 GGTGTGGAGGTGTGTCTCTC 59.681 60.000 0.00 0.00 34.39 3.20
2921 3266 1.122019 GGGTGTGGAGGTGTGTCTCT 61.122 60.000 0.00 0.00 34.39 3.10
2924 3269 0.182775 AAAGGGTGTGGAGGTGTGTC 59.817 55.000 0.00 0.00 0.00 3.67
2936 3281 2.257034 GTCTAGCGTCGTAAAAGGGTG 58.743 52.381 0.00 0.00 0.00 4.61
2937 3282 1.888512 TGTCTAGCGTCGTAAAAGGGT 59.111 47.619 0.00 0.00 0.00 4.34
2939 3284 2.937591 TGTGTCTAGCGTCGTAAAAGG 58.062 47.619 0.00 0.00 0.00 3.11
2940 3285 5.275788 GCTAATGTGTCTAGCGTCGTAAAAG 60.276 44.000 0.00 0.00 32.98 2.27
2941 3286 4.560035 GCTAATGTGTCTAGCGTCGTAAAA 59.440 41.667 0.00 0.00 32.98 1.52
2944 3289 2.679336 TGCTAATGTGTCTAGCGTCGTA 59.321 45.455 0.00 0.00 43.95 3.43
2945 3290 1.471287 TGCTAATGTGTCTAGCGTCGT 59.529 47.619 0.00 0.00 43.95 4.34
2946 3291 2.112522 CTGCTAATGTGTCTAGCGTCG 58.887 52.381 0.00 0.00 43.95 5.12
2961 3308 2.589540 CATGGCCCCGTTCTGCTA 59.410 61.111 0.00 0.00 0.00 3.49
2976 3324 2.771943 TGGAATTAGGTTCTCTCCGCAT 59.228 45.455 0.00 0.00 37.01 4.73
2977 3325 2.184533 TGGAATTAGGTTCTCTCCGCA 58.815 47.619 0.00 0.00 37.01 5.69
2979 3327 6.346477 TGATATGGAATTAGGTTCTCTCCG 57.654 41.667 0.00 0.00 37.01 4.63
2982 3330 7.570607 ACTCCTTGATATGGAATTAGGTTCTCT 59.429 37.037 0.00 0.00 37.01 3.10
2983 3331 7.740805 ACTCCTTGATATGGAATTAGGTTCTC 58.259 38.462 0.00 0.00 37.01 2.87
2989 3337 4.932200 GGCGACTCCTTGATATGGAATTAG 59.068 45.833 0.00 0.00 32.61 1.73
2991 3339 3.136443 TGGCGACTCCTTGATATGGAATT 59.864 43.478 0.00 0.00 35.26 2.17
2995 3343 1.541233 GGTGGCGACTCCTTGATATGG 60.541 57.143 0.95 0.00 40.89 2.74
2999 3347 2.227089 GACGGTGGCGACTCCTTGAT 62.227 60.000 7.94 0.00 41.93 2.57
3000 3348 2.915659 ACGGTGGCGACTCCTTGA 60.916 61.111 7.94 0.00 41.93 3.02
3009 3358 2.099831 GTAGACGAGACGGTGGCG 59.900 66.667 0.00 0.00 0.00 5.69
3017 3366 3.252701 GTGTCTTGTTCAGGTAGACGAGA 59.747 47.826 0.00 0.00 40.86 4.04
3021 3370 4.272748 GGTTTGTGTCTTGTTCAGGTAGAC 59.727 45.833 0.00 0.00 38.96 2.59
3025 3374 2.025321 AGGGTTTGTGTCTTGTTCAGGT 60.025 45.455 0.00 0.00 0.00 4.00
3026 3375 2.654863 AGGGTTTGTGTCTTGTTCAGG 58.345 47.619 0.00 0.00 0.00 3.86
3031 3380 3.876341 TCGTTTAGGGTTTGTGTCTTGT 58.124 40.909 0.00 0.00 0.00 3.16
3032 3381 4.334481 AGTTCGTTTAGGGTTTGTGTCTTG 59.666 41.667 0.00 0.00 0.00 3.02
3034 3383 4.124970 GAGTTCGTTTAGGGTTTGTGTCT 58.875 43.478 0.00 0.00 0.00 3.41
3066 3415 6.377429 GGGAGGGATCTTTCTTCGTTTTTAAT 59.623 38.462 0.00 0.00 0.00 1.40
3067 3416 5.708697 GGGAGGGATCTTTCTTCGTTTTTAA 59.291 40.000 0.00 0.00 0.00 1.52
3068 3417 5.250982 GGGAGGGATCTTTCTTCGTTTTTA 58.749 41.667 0.00 0.00 0.00 1.52
3070 3419 3.687125 GGGAGGGATCTTTCTTCGTTTT 58.313 45.455 0.00 0.00 0.00 2.43
3076 3425 1.205055 GGACGGGAGGGATCTTTCTT 58.795 55.000 0.00 0.00 0.00 2.52
3079 3428 2.732619 GCGGACGGGAGGGATCTTT 61.733 63.158 0.00 0.00 0.00 2.52
3082 3431 3.447025 CTTGCGGACGGGAGGGATC 62.447 68.421 0.00 0.00 0.00 3.36
3093 3442 3.379445 GACCTCGGTCCTTGCGGA 61.379 66.667 4.73 0.00 39.08 5.54
3102 3451 0.611340 GAGTAGTGGTGGACCTCGGT 60.611 60.000 0.00 0.00 36.82 4.69
3105 3454 1.482593 CATGGAGTAGTGGTGGACCTC 59.517 57.143 0.00 0.00 36.82 3.85
3106 3455 1.078823 TCATGGAGTAGTGGTGGACCT 59.921 52.381 0.00 0.00 36.82 3.85
3115 3464 2.493687 GGCCCTAGGATCATGGAGTAGT 60.494 54.545 11.48 0.00 0.00 2.73
3117 3466 1.550179 CGGCCCTAGGATCATGGAGTA 60.550 57.143 11.48 0.00 0.00 2.59
3118 3467 0.833834 CGGCCCTAGGATCATGGAGT 60.834 60.000 11.48 0.00 0.00 3.85
3137 3486 2.808321 GTCCGTTTCGTCTCCGGC 60.808 66.667 0.00 0.00 41.46 6.13
3138 3487 2.503375 CGTCCGTTTCGTCTCCGG 60.503 66.667 0.00 0.00 43.03 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.