Multiple sequence alignment - TraesCS7B01G249500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G249500 chr7B 100.000 2208 0 0 1802 4009 461201772 461203979 0.000000e+00 4078.0
1 TraesCS7B01G249500 chr7B 100.000 1520 0 0 1 1520 461199971 461201490 0.000000e+00 2808.0
2 TraesCS7B01G249500 chr7B 77.181 298 44 16 219 507 315056880 315056598 6.940000e-33 152.0
3 TraesCS7B01G249500 chr7B 100.000 62 0 0 3489 3550 461203397 461203458 9.100000e-22 115.0
4 TraesCS7B01G249500 chr7B 100.000 62 0 0 3427 3488 461203459 461203520 9.100000e-22 115.0
5 TraesCS7B01G249500 chr7D 94.243 1459 63 12 1807 3256 444347701 444349147 0.000000e+00 2209.0
6 TraesCS7B01G249500 chr7D 92.999 757 31 15 767 1520 444346922 444347659 0.000000e+00 1085.0
7 TraesCS7B01G249500 chr7D 87.870 338 25 9 3506 3837 444349202 444349529 2.260000e-102 383.0
8 TraesCS7B01G249500 chr7D 93.103 145 8 2 3866 4009 444349965 444350108 1.130000e-50 211.0
9 TraesCS7B01G249500 chr7A 91.232 1494 103 18 1806 3282 495431361 495432843 0.000000e+00 2008.0
10 TraesCS7B01G249500 chr7A 84.391 1608 138 56 1 1520 495429732 495431314 0.000000e+00 1474.0
11 TraesCS7B01G249500 chr7A 93.750 144 9 0 3866 4009 495537197 495537340 2.430000e-52 217.0
12 TraesCS7B01G249500 chr7A 80.071 281 24 15 3560 3837 495536513 495536764 3.180000e-41 180.0
13 TraesCS7B01G249500 chr7A 84.444 90 14 0 455 544 182025694 182025783 5.520000e-14 89.8
14 TraesCS7B01G249500 chr5D 90.645 1411 101 19 1802 3191 396430147 396431547 0.000000e+00 1845.0
15 TraesCS7B01G249500 chr5D 91.631 466 22 7 977 1437 396429624 396430077 2.630000e-176 628.0
16 TraesCS7B01G249500 chr5D 93.082 159 11 0 3284 3442 507218742 507218584 2.410000e-57 233.0
17 TraesCS7B01G249500 chr5D 88.043 184 17 4 3259 3442 542535071 542535249 3.140000e-51 213.0
18 TraesCS7B01G249500 chr5B 89.599 1423 102 21 1805 3191 476451876 476453288 0.000000e+00 1766.0
19 TraesCS7B01G249500 chr5B 92.870 547 32 6 977 1520 476451294 476451836 0.000000e+00 787.0
20 TraesCS7B01G249500 chr5B 84.932 146 15 6 165 307 398151244 398151103 1.500000e-29 141.0
21 TraesCS7B01G249500 chr5B 84.507 142 14 8 169 307 108548205 108548341 2.510000e-27 134.0
22 TraesCS7B01G249500 chr6A 93.038 158 11 0 3284 3441 222571244 222571401 8.660000e-57 231.0
23 TraesCS7B01G249500 chr6A 80.000 285 33 16 168 443 137546781 137546512 5.290000e-44 189.0
24 TraesCS7B01G249500 chr3A 90.909 176 11 5 3284 3455 362899682 362899856 8.660000e-57 231.0
25 TraesCS7B01G249500 chr3A 75.185 270 51 12 182 443 616708364 616708103 3.270000e-21 113.0
26 TraesCS7B01G249500 chr3B 92.500 160 12 0 3283 3442 655849586 655849427 3.120000e-56 230.0
27 TraesCS7B01G249500 chr3B 83.108 148 14 9 165 307 795042029 795041888 1.510000e-24 124.0
28 TraesCS7B01G249500 chr2D 91.566 166 14 0 3277 3442 516708483 516708318 3.120000e-56 230.0
29 TraesCS7B01G249500 chr2D 89.326 178 18 1 3284 3460 24312193 24312370 5.210000e-54 222.0
30 TraesCS7B01G249500 chr2D 83.108 148 14 9 165 307 43230380 43230239 1.510000e-24 124.0
31 TraesCS7B01G249500 chr5A 91.463 164 12 2 3280 3442 555280938 555280776 1.450000e-54 224.0
32 TraesCS7B01G249500 chr5A 75.388 451 59 34 167 580 502392662 502393097 1.920000e-38 171.0
33 TraesCS7B01G249500 chr5A 74.169 391 77 20 169 548 599557889 599558266 1.500000e-29 141.0
34 TraesCS7B01G249500 chr5A 74.312 327 59 19 182 498 227124967 227124656 9.100000e-22 115.0
35 TraesCS7B01G249500 chr6B 90.964 166 14 1 3272 3437 189483390 189483554 5.210000e-54 222.0
36 TraesCS7B01G249500 chr1A 73.913 391 76 22 169 548 111798097 111798472 2.510000e-27 134.0
37 TraesCS7B01G249500 chr1B 74.843 318 56 15 182 494 610964661 610964959 5.440000e-24 122.0
38 TraesCS7B01G249500 chr1D 76.289 194 33 11 401 587 100080805 100080992 1.530000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G249500 chr7B 461199971 461203979 4008 False 1779.0 4078 100.00000 1 4009 4 chr7B.!!$F1 4008
1 TraesCS7B01G249500 chr7D 444346922 444350108 3186 False 972.0 2209 92.05375 767 4009 4 chr7D.!!$F1 3242
2 TraesCS7B01G249500 chr7A 495429732 495432843 3111 False 1741.0 2008 87.81150 1 3282 2 chr7A.!!$F2 3281
3 TraesCS7B01G249500 chr5D 396429624 396431547 1923 False 1236.5 1845 91.13800 977 3191 2 chr5D.!!$F2 2214
4 TraesCS7B01G249500 chr5B 476451294 476453288 1994 False 1276.5 1766 91.23450 977 3191 2 chr5B.!!$F2 2214

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
54 55 0.690762 ATTAATCACCCGCCCGCTAT 59.309 50.0 0.0 0.0 0.00 2.97 F
1487 1670 0.391528 CGGTAAACGGGGAATTCGGT 60.392 55.0 0.0 0.0 39.42 4.69 F
2147 2351 0.399075 GGGAAGGGGAGACAAAACGA 59.601 55.0 0.0 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 2015 1.806542 CTGGGTTGACAGGAACAATCG 59.193 52.381 0.00 0.0 34.84 3.34 R
2819 3027 1.601166 TGTCGTCGTCCTCTTTCTCA 58.399 50.000 0.00 0.0 0.00 3.27 R
3587 3851 0.110486 ATCTTTTGCCCACGTGTCCT 59.890 50.000 15.65 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 5.584913 ACATGGGATCTCCTTATACTCGAT 58.415 41.667 0.00 0.00 36.20 3.59
36 37 7.860918 TCTCCTTATACTCGATATAACGCAT 57.139 36.000 0.00 0.00 33.12 4.73
46 47 4.860352 TCGATATAACGCATTAATCACCCG 59.140 41.667 0.00 0.00 0.00 5.28
47 48 4.491924 CGATATAACGCATTAATCACCCGC 60.492 45.833 0.00 0.00 0.00 6.13
54 55 0.690762 ATTAATCACCCGCCCGCTAT 59.309 50.000 0.00 0.00 0.00 2.97
80 81 2.550180 GTTGTGCTCAGTTCTCCCTTTC 59.450 50.000 0.00 0.00 0.00 2.62
89 91 5.377478 TCAGTTCTCCCTTTCCTCTTTTTC 58.623 41.667 0.00 0.00 0.00 2.29
114 116 9.025041 TCTTTTGTCTTTCCTTTCTCTTTTTCT 57.975 29.630 0.00 0.00 0.00 2.52
115 117 9.645059 CTTTTGTCTTTCCTTTCTCTTTTTCTT 57.355 29.630 0.00 0.00 0.00 2.52
116 118 9.996554 TTTTGTCTTTCCTTTCTCTTTTTCTTT 57.003 25.926 0.00 0.00 0.00 2.52
117 119 9.996554 TTTGTCTTTCCTTTCTCTTTTTCTTTT 57.003 25.926 0.00 0.00 0.00 2.27
118 120 9.996554 TTGTCTTTCCTTTCTCTTTTTCTTTTT 57.003 25.926 0.00 0.00 0.00 1.94
146 148 9.402320 CCCTTTTTCATTTTCCTTTTCCTTTTA 57.598 29.630 0.00 0.00 0.00 1.52
192 194 9.511144 TCTTTCTTAAAATCGTGAACTTTTTCC 57.489 29.630 0.00 0.00 0.00 3.13
193 195 9.296400 CTTTCTTAAAATCGTGAACTTTTTCCA 57.704 29.630 0.00 0.00 0.00 3.53
194 196 9.640963 TTTCTTAAAATCGTGAACTTTTTCCAA 57.359 25.926 0.00 0.00 0.00 3.53
195 197 9.640963 TTCTTAAAATCGTGAACTTTTTCCAAA 57.359 25.926 0.00 0.00 0.00 3.28
196 198 9.640963 TCTTAAAATCGTGAACTTTTTCCAAAA 57.359 25.926 0.00 0.00 0.00 2.44
199 201 6.747659 AATCGTGAACTTTTTCCAAAATCG 57.252 33.333 0.00 0.00 0.00 3.34
200 202 5.487153 TCGTGAACTTTTTCCAAAATCGA 57.513 34.783 0.00 0.00 0.00 3.59
201 203 6.067263 TCGTGAACTTTTTCCAAAATCGAT 57.933 33.333 0.00 0.00 0.00 3.59
202 204 5.912396 TCGTGAACTTTTTCCAAAATCGATG 59.088 36.000 0.00 0.00 0.00 3.84
203 205 5.912396 CGTGAACTTTTTCCAAAATCGATGA 59.088 36.000 0.00 0.00 0.00 2.92
204 206 6.416455 CGTGAACTTTTTCCAAAATCGATGAA 59.584 34.615 0.00 0.00 0.00 2.57
205 207 7.555582 GTGAACTTTTTCCAAAATCGATGAAC 58.444 34.615 0.00 0.00 0.00 3.18
206 208 7.435192 GTGAACTTTTTCCAAAATCGATGAACT 59.565 33.333 0.00 0.00 0.00 3.01
207 209 7.978975 TGAACTTTTTCCAAAATCGATGAACTT 59.021 29.630 0.00 0.00 0.00 2.66
208 210 8.716646 AACTTTTTCCAAAATCGATGAACTTT 57.283 26.923 0.00 0.00 0.00 2.66
209 211 8.716646 ACTTTTTCCAAAATCGATGAACTTTT 57.283 26.923 0.00 0.00 0.00 2.27
210 212 9.161629 ACTTTTTCCAAAATCGATGAACTTTTT 57.838 25.926 0.00 0.00 0.00 1.94
260 262 7.698836 AATTGATGAACCTTTTTCAAACTCG 57.301 32.000 0.00 0.00 32.35 4.18
261 263 6.443934 TTGATGAACCTTTTTCAAACTCGA 57.556 33.333 0.00 0.00 31.55 4.04
262 264 6.633500 TGATGAACCTTTTTCAAACTCGAT 57.367 33.333 0.00 0.00 31.55 3.59
263 265 6.437928 TGATGAACCTTTTTCAAACTCGATG 58.562 36.000 0.00 0.00 31.55 3.84
264 266 6.262049 TGATGAACCTTTTTCAAACTCGATGA 59.738 34.615 0.00 0.00 31.55 2.92
265 267 6.633500 TGAACCTTTTTCAAACTCGATGAT 57.367 33.333 0.00 0.00 0.00 2.45
266 268 7.038154 TGAACCTTTTTCAAACTCGATGATT 57.962 32.000 0.00 0.00 0.00 2.57
267 269 7.488322 TGAACCTTTTTCAAACTCGATGATTT 58.512 30.769 0.00 0.00 0.00 2.17
268 270 7.978975 TGAACCTTTTTCAAACTCGATGATTTT 59.021 29.630 0.00 0.00 0.00 1.82
269 271 8.716646 AACCTTTTTCAAACTCGATGATTTTT 57.283 26.923 0.00 0.00 0.00 1.94
522 631 7.914537 ACTTGTTTCGAATTTCATGAACTTC 57.085 32.000 22.26 22.26 0.00 3.01
559 688 8.060090 CGTGAAGTTTTCTAATTTGTACGAACT 58.940 33.333 0.00 0.00 29.54 3.01
611 740 5.694674 TCACGTTTTTCAAATGAGCAAAC 57.305 34.783 0.00 8.93 0.00 2.93
637 766 6.844696 TTTTGGAATCGCTACACTGATATC 57.155 37.500 0.00 0.00 0.00 1.63
638 767 4.160736 TGGAATCGCTACACTGATATCG 57.839 45.455 0.00 0.00 0.00 2.92
641 770 2.688364 TCGCTACACTGATATCGCTG 57.312 50.000 0.00 0.00 0.00 5.18
644 773 3.253432 TCGCTACACTGATATCGCTGAAT 59.747 43.478 6.47 0.00 0.00 2.57
661 790 5.219859 CGCTGAATTAACTGATATCGCTACG 60.220 44.000 0.00 0.00 0.00 3.51
664 793 6.509656 TGAATTAACTGATATCGCTACGGTT 58.490 36.000 0.00 0.00 37.05 4.44
674 819 4.867599 CTACGGTTCCTCGCGCCC 62.868 72.222 0.00 0.00 0.00 6.13
679 824 4.143333 GTTCCTCGCGCCCTGCTA 62.143 66.667 0.00 0.00 43.27 3.49
680 825 3.838271 TTCCTCGCGCCCTGCTAG 61.838 66.667 0.00 0.00 43.27 3.42
693 838 1.135915 CCTGCTAGGTCTGCTACTGTG 59.864 57.143 0.00 0.00 0.00 3.66
697 842 2.095461 CTAGGTCTGCTACTGTGCTGA 58.905 52.381 7.37 7.37 38.31 4.26
704 849 1.288350 GCTACTGTGCTGAGCAGATG 58.712 55.000 7.71 3.34 40.08 2.90
815 975 2.897350 GTATCAGTGCCGGCCTGC 60.897 66.667 29.49 12.95 0.00 4.85
831 992 4.150098 CGGCCTGCTTCGATTACTTATAAC 59.850 45.833 0.00 0.00 0.00 1.89
965 1127 1.864559 AGACCTCCTCCTCCCCAGT 60.865 63.158 0.00 0.00 0.00 4.00
968 1130 1.081092 CCTCCTCCTCCCCAGTCAA 59.919 63.158 0.00 0.00 0.00 3.18
993 1155 4.615452 CGCGAGAGTATACCCCAGAATAAC 60.615 50.000 0.00 0.00 0.00 1.89
1029 1191 1.406069 GGCAAGATCCAGAAGAAGCGA 60.406 52.381 0.00 0.00 0.00 4.93
1038 1200 3.909258 GAAGAAGCGACACGGCGGA 62.909 63.158 13.24 0.00 38.18 5.54
1430 1611 5.185056 TGCTGCTGTATCTGTTTCTACTGTA 59.815 40.000 0.00 0.00 0.00 2.74
1487 1670 0.391528 CGGTAAACGGGGAATTCGGT 60.392 55.000 0.00 0.00 39.42 4.69
1887 2077 4.265073 ACATGTATGAGGGAGTTTTGCTC 58.735 43.478 0.00 0.00 43.39 4.26
1920 2117 9.512435 CTGACAATTTCCATATTCTTGATTGTC 57.488 33.333 15.55 15.55 45.85 3.18
1974 2178 6.670077 TGTGAATAATTGTAGCGCAATACA 57.330 33.333 11.47 7.93 46.29 2.29
1975 2179 6.482835 TGTGAATAATTGTAGCGCAATACAC 58.517 36.000 11.47 9.96 46.29 2.90
2115 2319 2.800544 GCGATGAATGCGTTATGGTAGT 59.199 45.455 0.00 0.00 0.00 2.73
2122 2326 4.600692 ATGCGTTATGGTAGTGCTGATA 57.399 40.909 0.00 0.00 0.00 2.15
2147 2351 0.399075 GGGAAGGGGAGACAAAACGA 59.601 55.000 0.00 0.00 0.00 3.85
2197 2401 5.064962 CCACTCTCTTTCATGAATCTTCAGC 59.935 44.000 9.40 0.00 41.08 4.26
2199 2403 7.040494 CACTCTCTTTCATGAATCTTCAGCTA 58.960 38.462 9.40 0.00 41.08 3.32
2214 2418 9.860898 AATCTTCAGCTATAATTTGAACCAAAC 57.139 29.630 0.00 0.00 36.13 2.93
2478 2686 1.300931 TCAGTGAACGTGCAGCTCC 60.301 57.895 0.00 0.00 0.00 4.70
2780 2988 1.655484 CTGATGATGTTGCGGTGCTA 58.345 50.000 0.00 0.00 0.00 3.49
2813 3021 1.070445 GAGGACCTGAGCATGGAGATG 59.930 57.143 0.00 0.00 0.00 2.90
2819 3027 2.369203 CCTGAGCATGGAGATGAGTGAT 59.631 50.000 0.00 0.00 0.00 3.06
2852 3060 3.133691 CGACGACATGGAAATGGATGAT 58.866 45.455 0.00 0.00 0.00 2.45
2860 3074 2.292267 GGAAATGGATGATGCTGACGT 58.708 47.619 0.00 0.00 0.00 4.34
2884 3098 1.153289 ATGGCCGTGCTAGCTTCAG 60.153 57.895 17.23 3.31 0.00 3.02
3154 3380 1.674322 CACCGTCGATTTTGCCCCT 60.674 57.895 0.00 0.00 0.00 4.79
3191 3426 5.529581 TTCCAAGGAAAGATGTTCAAACC 57.470 39.130 0.00 0.00 0.00 3.27
3196 3431 3.564225 AGGAAAGATGTTCAAACCGTGTC 59.436 43.478 0.00 0.00 0.00 3.67
3198 3433 0.865769 AGATGTTCAAACCGTGTCGC 59.134 50.000 0.00 0.00 0.00 5.19
3200 3435 0.816018 ATGTTCAAACCGTGTCGCCA 60.816 50.000 0.00 0.00 0.00 5.69
3203 3438 1.532007 GTTCAAACCGTGTCGCCAATA 59.468 47.619 0.00 0.00 0.00 1.90
3205 3440 0.869068 CAAACCGTGTCGCCAATACA 59.131 50.000 0.00 0.00 0.00 2.29
3209 3444 4.325028 AACCGTGTCGCCAATACATATA 57.675 40.909 0.00 0.00 0.00 0.86
3210 3445 4.530710 ACCGTGTCGCCAATACATATAT 57.469 40.909 0.00 0.00 0.00 0.86
3211 3446 4.242475 ACCGTGTCGCCAATACATATATG 58.758 43.478 11.29 11.29 0.00 1.78
3213 3448 3.926527 CGTGTCGCCAATACATATATGCT 59.073 43.478 12.79 3.21 0.00 3.79
3214 3449 4.031765 CGTGTCGCCAATACATATATGCTC 59.968 45.833 12.79 0.00 0.00 4.26
3215 3450 4.031765 GTGTCGCCAATACATATATGCTCG 59.968 45.833 12.79 7.39 0.00 5.03
3216 3451 3.000322 GTCGCCAATACATATATGCTCGC 60.000 47.826 12.79 6.69 0.00 5.03
3217 3452 2.929398 CGCCAATACATATATGCTCGCA 59.071 45.455 12.79 0.00 0.00 5.10
3218 3453 3.557185 CGCCAATACATATATGCTCGCAT 59.443 43.478 12.79 9.57 40.19 4.73
3259 3494 4.722193 CCTTGTTGAGGGTGCGAT 57.278 55.556 0.00 0.00 42.26 4.58
3290 3554 6.038997 CAAGTTTAGTTGCTACTACTCCCT 57.961 41.667 7.56 0.00 36.61 4.20
3291 3555 5.918426 AGTTTAGTTGCTACTACTCCCTC 57.082 43.478 7.56 0.00 36.61 4.30
3292 3556 4.710865 AGTTTAGTTGCTACTACTCCCTCC 59.289 45.833 7.56 0.00 36.61 4.30
3293 3557 1.765230 AGTTGCTACTACTCCCTCCG 58.235 55.000 0.00 0.00 31.21 4.63
3294 3558 1.005687 AGTTGCTACTACTCCCTCCGT 59.994 52.381 0.00 0.00 31.21 4.69
3295 3559 1.823610 GTTGCTACTACTCCCTCCGTT 59.176 52.381 0.00 0.00 0.00 4.44
3296 3560 2.226962 TGCTACTACTCCCTCCGTTT 57.773 50.000 0.00 0.00 0.00 3.60
3297 3561 2.097825 TGCTACTACTCCCTCCGTTTC 58.902 52.381 0.00 0.00 0.00 2.78
3298 3562 2.291411 TGCTACTACTCCCTCCGTTTCT 60.291 50.000 0.00 0.00 0.00 2.52
3299 3563 3.054139 TGCTACTACTCCCTCCGTTTCTA 60.054 47.826 0.00 0.00 0.00 2.10
3300 3564 3.950395 GCTACTACTCCCTCCGTTTCTAA 59.050 47.826 0.00 0.00 0.00 2.10
3301 3565 4.400567 GCTACTACTCCCTCCGTTTCTAAA 59.599 45.833 0.00 0.00 0.00 1.85
3302 3566 5.068855 GCTACTACTCCCTCCGTTTCTAAAT 59.931 44.000 0.00 0.00 0.00 1.40
3303 3567 6.264067 GCTACTACTCCCTCCGTTTCTAAATA 59.736 42.308 0.00 0.00 0.00 1.40
3304 3568 7.039853 GCTACTACTCCCTCCGTTTCTAAATAT 60.040 40.741 0.00 0.00 0.00 1.28
3305 3569 7.672122 ACTACTCCCTCCGTTTCTAAATATT 57.328 36.000 0.00 0.00 0.00 1.28
3306 3570 8.087303 ACTACTCCCTCCGTTTCTAAATATTT 57.913 34.615 5.89 5.89 0.00 1.40
3307 3571 7.985752 ACTACTCCCTCCGTTTCTAAATATTTG 59.014 37.037 11.05 1.65 0.00 2.32
3308 3572 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
3309 3573 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
3310 3574 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
3311 3575 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
3312 3576 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
3313 3577 8.520351 CCCTCCGTTTCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
3334 3598 9.912634 TCTTTTAAGACATTTCAAATGGATGAC 57.087 29.630 14.70 1.26 0.00 3.06
3335 3599 9.918630 CTTTTAAGACATTTCAAATGGATGACT 57.081 29.630 14.70 3.33 0.00 3.41
3338 3602 9.513906 TTAAGACATTTCAAATGGATGACTACA 57.486 29.630 14.70 0.00 0.00 2.74
3339 3603 8.585471 AAGACATTTCAAATGGATGACTACAT 57.415 30.769 14.70 0.00 39.67 2.29
3340 3604 9.685276 AAGACATTTCAAATGGATGACTACATA 57.315 29.630 14.70 0.00 36.82 2.29
3341 3605 9.113838 AGACATTTCAAATGGATGACTACATAC 57.886 33.333 14.70 0.00 37.82 2.39
3342 3606 7.919690 ACATTTCAAATGGATGACTACATACG 58.080 34.615 14.70 0.00 40.03 3.06
3343 3607 6.918892 TTTCAAATGGATGACTACATACGG 57.081 37.500 0.00 0.00 40.03 4.02
3344 3608 5.862678 TCAAATGGATGACTACATACGGA 57.137 39.130 0.00 0.00 40.03 4.69
3345 3609 6.419484 TCAAATGGATGACTACATACGGAT 57.581 37.500 0.00 0.00 40.03 4.18
3346 3610 6.223120 TCAAATGGATGACTACATACGGATG 58.777 40.000 5.94 5.94 40.03 3.51
3348 3612 6.911250 AATGGATGACTACATACGGATGTA 57.089 37.500 19.32 19.32 44.77 2.29
3349 3613 7.482169 AATGGATGACTACATACGGATGTAT 57.518 36.000 20.64 7.21 45.42 2.29
3350 3614 8.589701 AATGGATGACTACATACGGATGTATA 57.410 34.615 20.64 10.80 45.42 1.47
3351 3615 8.768501 ATGGATGACTACATACGGATGTATAT 57.231 34.615 20.64 14.69 45.42 0.86
3352 3616 8.589701 TGGATGACTACATACGGATGTATATT 57.410 34.615 20.64 8.49 45.42 1.28
3353 3617 8.466798 TGGATGACTACATACGGATGTATATTG 58.533 37.037 20.64 11.52 45.42 1.90
3354 3618 8.683615 GGATGACTACATACGGATGTATATTGA 58.316 37.037 20.64 3.65 45.42 2.57
3355 3619 9.504710 GATGACTACATACGGATGTATATTGAC 57.495 37.037 20.64 9.98 45.42 3.18
3356 3620 8.398878 TGACTACATACGGATGTATATTGACA 57.601 34.615 20.64 12.27 45.42 3.58
3357 3621 9.020731 TGACTACATACGGATGTATATTGACAT 57.979 33.333 20.64 0.21 45.42 3.06
3387 3651 9.944376 TTAGAGTGTAGATTTACTCATTTTGCT 57.056 29.630 7.09 0.00 44.41 3.91
3388 3652 8.854614 AGAGTGTAGATTTACTCATTTTGCTT 57.145 30.769 7.09 0.00 44.41 3.91
3389 3653 8.940952 AGAGTGTAGATTTACTCATTTTGCTTC 58.059 33.333 7.09 0.00 44.41 3.86
3390 3654 7.743104 AGTGTAGATTTACTCATTTTGCTTCG 58.257 34.615 0.00 0.00 0.00 3.79
3391 3655 7.387948 AGTGTAGATTTACTCATTTTGCTTCGT 59.612 33.333 0.00 0.00 0.00 3.85
3392 3656 8.653338 GTGTAGATTTACTCATTTTGCTTCGTA 58.347 33.333 0.00 0.00 0.00 3.43
3393 3657 9.378551 TGTAGATTTACTCATTTTGCTTCGTAT 57.621 29.630 0.00 0.00 0.00 3.06
3394 3658 9.638300 GTAGATTTACTCATTTTGCTTCGTATG 57.362 33.333 0.00 0.00 0.00 2.39
3395 3659 8.268850 AGATTTACTCATTTTGCTTCGTATGT 57.731 30.769 0.00 0.00 0.00 2.29
3396 3660 9.378551 AGATTTACTCATTTTGCTTCGTATGTA 57.621 29.630 0.00 0.00 0.00 2.29
3397 3661 9.638300 GATTTACTCATTTTGCTTCGTATGTAG 57.362 33.333 0.00 0.00 0.00 2.74
3398 3662 8.542497 TTTACTCATTTTGCTTCGTATGTAGT 57.458 30.769 0.00 0.00 0.00 2.73
3399 3663 6.648725 ACTCATTTTGCTTCGTATGTAGTC 57.351 37.500 0.00 0.00 0.00 2.59
3400 3664 6.163476 ACTCATTTTGCTTCGTATGTAGTCA 58.837 36.000 0.00 0.00 0.00 3.41
3401 3665 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
3402 3666 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
3403 3667 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
3404 3668 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
3405 3669 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
3406 3670 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
3407 3671 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
3408 3672 4.091509 GCTTCGTATGTAGTCACTTGTTGG 59.908 45.833 0.00 0.00 0.00 3.77
3409 3673 5.456548 TTCGTATGTAGTCACTTGTTGGA 57.543 39.130 0.00 0.00 0.00 3.53
3410 3674 5.456548 TCGTATGTAGTCACTTGTTGGAA 57.543 39.130 0.00 0.00 0.00 3.53
3411 3675 6.032956 TCGTATGTAGTCACTTGTTGGAAT 57.967 37.500 0.00 0.00 0.00 3.01
3412 3676 6.097356 TCGTATGTAGTCACTTGTTGGAATC 58.903 40.000 0.00 0.00 0.00 2.52
3413 3677 6.071560 TCGTATGTAGTCACTTGTTGGAATCT 60.072 38.462 0.00 0.00 0.00 2.40
3414 3678 6.253727 CGTATGTAGTCACTTGTTGGAATCTC 59.746 42.308 0.00 0.00 0.00 2.75
3415 3679 5.808366 TGTAGTCACTTGTTGGAATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
3416 3680 6.911250 TGTAGTCACTTGTTGGAATCTCTA 57.089 37.500 0.00 0.00 0.00 2.43
3417 3681 7.482169 TGTAGTCACTTGTTGGAATCTCTAT 57.518 36.000 0.00 0.00 0.00 1.98
3418 3682 8.589701 TGTAGTCACTTGTTGGAATCTCTATA 57.410 34.615 0.00 0.00 0.00 1.31
3419 3683 9.031537 TGTAGTCACTTGTTGGAATCTCTATAA 57.968 33.333 0.00 0.00 0.00 0.98
3420 3684 9.522804 GTAGTCACTTGTTGGAATCTCTATAAG 57.477 37.037 0.00 0.00 0.00 1.73
3421 3685 7.560368 AGTCACTTGTTGGAATCTCTATAAGG 58.440 38.462 0.00 0.00 0.00 2.69
3422 3686 7.400339 AGTCACTTGTTGGAATCTCTATAAGGA 59.600 37.037 0.00 0.00 0.00 3.36
3423 3687 7.492994 GTCACTTGTTGGAATCTCTATAAGGAC 59.507 40.741 0.00 0.00 0.00 3.85
3424 3688 7.180229 TCACTTGTTGGAATCTCTATAAGGACA 59.820 37.037 0.00 0.00 0.00 4.02
3425 3689 7.824289 CACTTGTTGGAATCTCTATAAGGACAA 59.176 37.037 0.00 0.00 0.00 3.18
3426 3690 8.383175 ACTTGTTGGAATCTCTATAAGGACAAA 58.617 33.333 0.00 0.00 0.00 2.83
3427 3691 9.401058 CTTGTTGGAATCTCTATAAGGACAAAT 57.599 33.333 0.00 0.00 0.00 2.32
3439 3703 9.991906 TCTATAAGGACAAATATTTAGGAACGG 57.008 33.333 0.00 0.00 0.00 4.44
3440 3704 9.991906 CTATAAGGACAAATATTTAGGAACGGA 57.008 33.333 0.00 0.00 0.00 4.69
3441 3705 8.904099 ATAAGGACAAATATTTAGGAACGGAG 57.096 34.615 0.00 0.00 0.00 4.63
3443 3707 7.427989 AGGACAAATATTTAGGAACGGAGTA 57.572 36.000 0.00 0.00 45.00 2.59
3444 3708 8.030913 AGGACAAATATTTAGGAACGGAGTAT 57.969 34.615 0.00 0.00 45.00 2.12
3445 3709 8.491958 AGGACAAATATTTAGGAACGGAGTATT 58.508 33.333 0.00 0.00 45.00 1.89
3446 3710 9.117183 GGACAAATATTTAGGAACGGAGTATTT 57.883 33.333 0.00 0.00 45.00 1.40
3448 3712 9.901172 ACAAATATTTAGGAACGGAGTATTTCT 57.099 29.630 0.00 0.00 45.00 2.52
3450 3714 9.901172 AAATATTTAGGAACGGAGTATTTCTGT 57.099 29.630 0.00 0.00 45.00 3.41
3454 3718 9.901172 ATTTAGGAACGGAGTATTTCTGTATTT 57.099 29.630 0.00 0.00 45.00 1.40
3455 3719 8.937634 TTAGGAACGGAGTATTTCTGTATTTC 57.062 34.615 0.00 0.00 45.00 2.17
3456 3720 6.040878 AGGAACGGAGTATTTCTGTATTTCG 58.959 40.000 0.00 0.00 45.00 3.46
3457 3721 5.809051 GGAACGGAGTATTTCTGTATTTCGT 59.191 40.000 0.00 0.00 45.00 3.85
3458 3722 6.974622 GGAACGGAGTATTTCTGTATTTCGTA 59.025 38.462 0.00 0.00 45.00 3.43
3459 3723 7.650903 GGAACGGAGTATTTCTGTATTTCGTAT 59.349 37.037 0.00 0.00 45.00 3.06
3460 3724 8.937634 AACGGAGTATTTCTGTATTTCGTATT 57.062 30.769 0.00 0.00 45.00 1.89
3461 3725 8.571461 ACGGAGTATTTCTGTATTTCGTATTC 57.429 34.615 0.00 0.00 43.68 1.75
3462 3726 8.192774 ACGGAGTATTTCTGTATTTCGTATTCA 58.807 33.333 0.00 0.00 43.68 2.57
3463 3727 8.691727 CGGAGTATTTCTGTATTTCGTATTCAG 58.308 37.037 0.00 0.00 0.00 3.02
3464 3728 9.745880 GGAGTATTTCTGTATTTCGTATTCAGA 57.254 33.333 5.85 5.85 34.08 3.27
3471 3735 8.131455 TCTGTATTTCGTATTCAGAATCAAGC 57.869 34.615 0.00 0.00 33.18 4.01
3472 3736 7.981789 TCTGTATTTCGTATTCAGAATCAAGCT 59.018 33.333 0.00 0.00 33.18 3.74
3473 3737 7.909267 TGTATTTCGTATTCAGAATCAAGCTG 58.091 34.615 0.00 0.00 34.71 4.24
3474 3738 7.763985 TGTATTTCGTATTCAGAATCAAGCTGA 59.236 33.333 0.00 0.00 40.41 4.26
3483 3747 7.848223 TTCAGAATCAAGCTGAATTATCGAA 57.152 32.000 0.00 0.00 44.81 3.71
3484 3748 8.442632 TTCAGAATCAAGCTGAATTATCGAAT 57.557 30.769 0.00 0.00 44.81 3.34
3485 3749 8.081208 TCAGAATCAAGCTGAATTATCGAATC 57.919 34.615 0.00 0.00 39.29 2.52
3486 3750 7.930325 TCAGAATCAAGCTGAATTATCGAATCT 59.070 33.333 0.00 0.00 39.29 2.40
3487 3751 8.222433 CAGAATCAAGCTGAATTATCGAATCTC 58.778 37.037 0.00 0.00 35.39 2.75
3488 3752 7.930325 AGAATCAAGCTGAATTATCGAATCTCA 59.070 33.333 0.00 0.00 0.00 3.27
3489 3753 8.618702 AATCAAGCTGAATTATCGAATCTCAT 57.381 30.769 0.00 0.00 0.00 2.90
3490 3754 9.716531 AATCAAGCTGAATTATCGAATCTCATA 57.283 29.630 0.00 0.00 0.00 2.15
3491 3755 9.887629 ATCAAGCTGAATTATCGAATCTCATAT 57.112 29.630 0.00 0.00 0.00 1.78
3492 3756 9.716531 TCAAGCTGAATTATCGAATCTCATATT 57.283 29.630 0.00 0.00 0.00 1.28
3501 3765 8.981724 TTATCGAATCTCATATTTAGGAACGG 57.018 34.615 0.00 0.00 0.00 4.44
3502 3766 6.644248 TCGAATCTCATATTTAGGAACGGA 57.356 37.500 0.00 0.00 0.00 4.69
3503 3767 6.678878 TCGAATCTCATATTTAGGAACGGAG 58.321 40.000 0.00 0.00 0.00 4.63
3505 3769 7.446319 TCGAATCTCATATTTAGGAACGGAGTA 59.554 37.037 0.00 0.00 45.00 2.59
3506 3770 8.244802 CGAATCTCATATTTAGGAACGGAGTAT 58.755 37.037 0.00 0.00 45.00 2.12
3507 3771 9.930693 GAATCTCATATTTAGGAACGGAGTATT 57.069 33.333 0.00 0.00 45.00 1.89
3509 3773 9.930693 ATCTCATATTTAGGAACGGAGTATTTC 57.069 33.333 0.00 0.00 45.00 2.17
3510 3774 9.144298 TCTCATATTTAGGAACGGAGTATTTCT 57.856 33.333 0.00 0.00 45.00 2.52
3511 3775 9.197694 CTCATATTTAGGAACGGAGTATTTCTG 57.802 37.037 0.00 0.00 45.00 3.02
3512 3776 8.701895 TCATATTTAGGAACGGAGTATTTCTGT 58.298 33.333 0.00 0.00 45.00 3.41
3513 3777 9.976511 CATATTTAGGAACGGAGTATTTCTGTA 57.023 33.333 0.00 0.00 45.00 2.74
3546 3810 8.442632 TTCAGAATCAAGCTGAATTATCGAAT 57.557 30.769 0.00 0.00 44.81 3.34
3573 3837 3.194116 CGTTTACTAGGAGTAGGTGCCAA 59.806 47.826 0.00 0.00 31.47 4.52
3577 3841 2.188817 CTAGGAGTAGGTGCCAAGGTT 58.811 52.381 0.00 0.00 0.00 3.50
3581 3845 4.368067 AGGAGTAGGTGCCAAGGTTATTA 58.632 43.478 0.00 0.00 0.00 0.98
3582 3846 4.409247 AGGAGTAGGTGCCAAGGTTATTAG 59.591 45.833 0.00 0.00 0.00 1.73
3584 3848 4.368067 AGTAGGTGCCAAGGTTATTAGGA 58.632 43.478 0.00 0.00 0.00 2.94
3585 3849 3.933861 AGGTGCCAAGGTTATTAGGAG 57.066 47.619 0.00 0.00 0.00 3.69
3587 3851 4.368067 AGGTGCCAAGGTTATTAGGAGTA 58.632 43.478 0.00 0.00 0.00 2.59
3588 3852 4.409247 AGGTGCCAAGGTTATTAGGAGTAG 59.591 45.833 0.00 0.00 0.00 2.57
3606 3870 0.110486 AGGACACGTGGGCAAAAGAT 59.890 50.000 21.57 0.00 0.00 2.40
3608 3872 1.234821 GACACGTGGGCAAAAGATGA 58.765 50.000 21.57 0.00 0.00 2.92
3623 3887 0.991920 GATGAGGGGTCAAGGGTCAA 59.008 55.000 0.00 0.00 0.00 3.18
3654 3918 4.696479 AGTCGAAGCAATAATGGAGGAT 57.304 40.909 0.00 0.00 0.00 3.24
3671 3940 0.539986 GATTACCTCCCGGTCTTGCA 59.460 55.000 0.00 0.00 44.21 4.08
3688 3957 1.939974 GCATCTCTGCCACGTTGATA 58.060 50.000 0.00 0.00 42.88 2.15
3718 3987 2.029844 GCCACGTCTTGCCTCTCAC 61.030 63.158 0.00 0.00 0.00 3.51
3719 3988 1.367471 CCACGTCTTGCCTCTCACA 59.633 57.895 0.00 0.00 0.00 3.58
3734 4003 5.221521 GCCTCTCACACAGGATATACATCAA 60.222 44.000 0.00 0.00 31.91 2.57
3735 4004 6.219473 CCTCTCACACAGGATATACATCAAC 58.781 44.000 0.00 0.00 31.91 3.18
3743 4012 4.628766 CAGGATATACATCAACCATGCTCG 59.371 45.833 0.00 0.00 35.65 5.03
3749 4018 4.400529 ACATCAACCATGCTCGTATGTA 57.599 40.909 0.00 0.00 35.65 2.29
3757 4026 2.768833 TGCTCGTATGTATGACCGTC 57.231 50.000 0.00 0.00 0.00 4.79
3760 4029 3.129813 TGCTCGTATGTATGACCGTCTTT 59.870 43.478 0.00 0.00 0.00 2.52
3774 4043 0.778815 GTCTTTGTCTCGCTGTGACG 59.221 55.000 0.00 0.00 37.26 4.35
3842 4111 3.989787 TGGCAAGCGAGCGAGTCA 61.990 61.111 0.00 0.00 34.64 3.41
3843 4112 2.510238 GGCAAGCGAGCGAGTCAT 60.510 61.111 0.00 0.00 34.64 3.06
3845 4114 1.807165 GCAAGCGAGCGAGTCATCA 60.807 57.895 0.00 0.00 0.00 3.07
3846 4115 1.354337 GCAAGCGAGCGAGTCATCAA 61.354 55.000 0.00 0.00 0.00 2.57
3847 4116 0.368227 CAAGCGAGCGAGTCATCAAC 59.632 55.000 0.00 0.00 0.00 3.18
3848 4117 1.073216 AAGCGAGCGAGTCATCAACG 61.073 55.000 0.00 0.00 0.00 4.10
3850 4119 0.522705 GCGAGCGAGTCATCAACGTA 60.523 55.000 0.00 0.00 0.00 3.57
3851 4120 1.860399 GCGAGCGAGTCATCAACGTAT 60.860 52.381 0.00 0.00 0.00 3.06
3852 4121 1.775770 CGAGCGAGTCATCAACGTATG 59.224 52.381 0.00 0.00 0.00 2.39
3853 4122 2.791503 CGAGCGAGTCATCAACGTATGT 60.792 50.000 0.00 0.00 0.00 2.29
3854 4123 3.545426 CGAGCGAGTCATCAACGTATGTA 60.545 47.826 0.00 0.00 0.00 2.29
3855 4124 4.537965 GAGCGAGTCATCAACGTATGTAT 58.462 43.478 0.00 0.00 0.00 2.29
3856 4125 4.290969 AGCGAGTCATCAACGTATGTATG 58.709 43.478 0.00 0.00 0.00 2.39
3857 4126 4.036380 AGCGAGTCATCAACGTATGTATGA 59.964 41.667 0.00 0.00 0.00 2.15
3858 4127 4.146616 GCGAGTCATCAACGTATGTATGAC 59.853 45.833 17.75 17.75 41.64 3.06
3860 4129 4.607955 AGTCATCAACGTATGTATGACCG 58.392 43.478 20.24 8.62 41.93 4.79
3862 4131 4.802039 GTCATCAACGTATGTATGACCGTT 59.198 41.667 15.73 0.00 43.58 4.44
3875 4551 5.636121 TGTATGACCGTTGTACTTCATGTTC 59.364 40.000 0.00 0.00 31.20 3.18
3911 4587 0.457853 GGCAGCGAGTCATCAACGTA 60.458 55.000 0.00 0.00 0.00 3.57
3965 4641 2.124570 ACCGTGCTGCCCATCATC 60.125 61.111 0.00 0.00 0.00 2.92
3969 4645 4.881440 TGCTGCCCATCATCGGCC 62.881 66.667 0.00 0.00 46.48 6.13
3971 4647 4.552365 CTGCCCATCATCGGCCGT 62.552 66.667 27.15 10.00 46.48 5.68
3977 4653 3.527427 ATCATCGGCCGTCGCAGA 61.527 61.111 27.15 16.55 43.58 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.068560 GGCGGGTGATTAATGCGTTATA 58.931 45.455 0.00 0.00 0.00 0.98
36 37 0.250124 CATAGCGGGCGGGTGATTAA 60.250 55.000 7.04 0.00 0.00 1.40
80 81 8.253810 AGAAAGGAAAGACAAAAGAAAAAGAGG 58.746 33.333 0.00 0.00 0.00 3.69
89 91 9.645059 AAGAAAAAGAGAAAGGAAAGACAAAAG 57.355 29.630 0.00 0.00 0.00 2.27
115 117 8.744652 GGAAAAGGAAAATGAAAAAGGGAAAAA 58.255 29.630 0.00 0.00 0.00 1.94
116 118 8.112822 AGGAAAAGGAAAATGAAAAAGGGAAAA 58.887 29.630 0.00 0.00 0.00 2.29
117 119 7.638444 AGGAAAAGGAAAATGAAAAAGGGAAA 58.362 30.769 0.00 0.00 0.00 3.13
118 120 7.206789 AGGAAAAGGAAAATGAAAAAGGGAA 57.793 32.000 0.00 0.00 0.00 3.97
119 121 6.823286 AGGAAAAGGAAAATGAAAAAGGGA 57.177 33.333 0.00 0.00 0.00 4.20
120 122 7.880160 AAAGGAAAAGGAAAATGAAAAAGGG 57.120 32.000 0.00 0.00 0.00 3.95
177 179 6.067263 TCGATTTTGGAAAAAGTTCACGAT 57.933 33.333 0.00 0.00 35.25 3.73
180 182 7.435192 AGTTCATCGATTTTGGAAAAAGTTCAC 59.565 33.333 0.00 0.00 35.25 3.18
181 183 7.488322 AGTTCATCGATTTTGGAAAAAGTTCA 58.512 30.769 0.00 0.00 35.25 3.18
182 184 7.930513 AGTTCATCGATTTTGGAAAAAGTTC 57.069 32.000 0.00 0.00 0.00 3.01
183 185 8.716646 AAAGTTCATCGATTTTGGAAAAAGTT 57.283 26.923 0.00 0.00 0.00 2.66
184 186 8.716646 AAAAGTTCATCGATTTTGGAAAAAGT 57.283 26.923 0.00 0.00 0.00 2.66
207 209 7.065683 GGAGAAAAAGTTCATTGCCTTGAAAAA 59.934 33.333 0.45 0.00 37.36 1.94
208 210 6.538381 GGAGAAAAAGTTCATTGCCTTGAAAA 59.462 34.615 0.45 0.00 37.36 2.29
209 211 6.048509 GGAGAAAAAGTTCATTGCCTTGAAA 58.951 36.000 0.45 0.00 37.36 2.69
210 212 5.128499 TGGAGAAAAAGTTCATTGCCTTGAA 59.872 36.000 0.00 0.00 36.09 2.69
211 213 4.648762 TGGAGAAAAAGTTCATTGCCTTGA 59.351 37.500 0.00 0.00 36.09 3.02
212 214 4.947645 TGGAGAAAAAGTTCATTGCCTTG 58.052 39.130 0.00 0.00 36.09 3.61
213 215 5.612725 TTGGAGAAAAAGTTCATTGCCTT 57.387 34.783 0.00 0.00 36.09 4.35
214 216 5.612725 TTTGGAGAAAAAGTTCATTGCCT 57.387 34.783 0.00 0.00 36.09 4.75
215 217 6.866010 ATTTTGGAGAAAAAGTTCATTGCC 57.134 33.333 0.00 0.00 41.00 4.52
216 218 7.918643 TCAATTTTGGAGAAAAAGTTCATTGC 58.081 30.769 0.00 0.00 41.00 3.56
217 219 9.872757 CATCAATTTTGGAGAAAAAGTTCATTG 57.127 29.630 0.00 0.00 41.00 2.82
218 220 9.835389 TCATCAATTTTGGAGAAAAAGTTCATT 57.165 25.926 0.00 0.00 41.00 2.57
491 599 8.184848 TCATGAAATTCGAAACAAGTACACAAA 58.815 29.630 0.00 0.00 0.00 2.83
502 610 9.019764 TGAAAAGAAGTTCATGAAATTCGAAAC 57.980 29.630 31.58 25.23 46.36 2.78
505 613 9.748708 ATTTGAAAAGAAGTTCATGAAATTCGA 57.251 25.926 31.58 17.63 46.36 3.71
579 708 9.627395 TCATTTGAAAAACGTGAACTTAAAAGA 57.373 25.926 0.00 0.00 0.00 2.52
580 709 9.885743 CTCATTTGAAAAACGTGAACTTAAAAG 57.114 29.630 0.00 0.00 0.00 2.27
583 712 7.030165 TGCTCATTTGAAAAACGTGAACTTAA 58.970 30.769 0.00 0.00 0.00 1.85
584 713 6.556212 TGCTCATTTGAAAAACGTGAACTTA 58.444 32.000 0.00 0.00 0.00 2.24
618 747 2.917971 GCGATATCAGTGTAGCGATTCC 59.082 50.000 12.42 0.00 35.65 3.01
626 755 7.712797 TCAGTTAATTCAGCGATATCAGTGTA 58.287 34.615 3.12 0.00 0.00 2.90
630 759 8.741278 CGATATCAGTTAATTCAGCGATATCAG 58.259 37.037 18.39 12.00 40.47 2.90
632 761 7.433719 AGCGATATCAGTTAATTCAGCGATATC 59.566 37.037 3.12 13.06 38.56 1.63
633 762 7.261325 AGCGATATCAGTTAATTCAGCGATAT 58.739 34.615 3.12 0.00 0.00 1.63
634 763 6.621613 AGCGATATCAGTTAATTCAGCGATA 58.378 36.000 3.12 0.00 0.00 2.92
635 764 5.473931 AGCGATATCAGTTAATTCAGCGAT 58.526 37.500 3.12 0.00 0.00 4.58
636 765 4.871513 AGCGATATCAGTTAATTCAGCGA 58.128 39.130 3.12 0.00 0.00 4.93
637 766 5.219859 CGTAGCGATATCAGTTAATTCAGCG 60.220 44.000 3.12 0.00 0.00 5.18
638 767 5.061064 CCGTAGCGATATCAGTTAATTCAGC 59.939 44.000 3.12 0.00 0.00 4.26
641 770 6.089150 GGAACCGTAGCGATATCAGTTAATTC 59.911 42.308 3.12 0.00 0.00 2.17
644 773 4.581824 AGGAACCGTAGCGATATCAGTTAA 59.418 41.667 3.12 0.00 0.00 2.01
674 819 1.470632 GCACAGTAGCAGACCTAGCAG 60.471 57.143 0.00 0.00 0.00 4.24
675 820 0.532573 GCACAGTAGCAGACCTAGCA 59.467 55.000 0.00 0.00 0.00 3.49
676 821 0.820871 AGCACAGTAGCAGACCTAGC 59.179 55.000 0.00 0.00 36.85 3.42
677 822 2.095461 TCAGCACAGTAGCAGACCTAG 58.905 52.381 0.00 0.00 36.85 3.02
678 823 2.095461 CTCAGCACAGTAGCAGACCTA 58.905 52.381 0.00 0.00 36.85 3.08
679 824 0.894141 CTCAGCACAGTAGCAGACCT 59.106 55.000 0.00 0.00 36.85 3.85
680 825 0.739112 GCTCAGCACAGTAGCAGACC 60.739 60.000 0.00 0.00 36.26 3.85
681 826 0.037882 TGCTCAGCACAGTAGCAGAC 60.038 55.000 0.00 0.00 41.15 3.51
682 827 2.354902 TGCTCAGCACAGTAGCAGA 58.645 52.632 0.00 0.00 41.15 4.26
720 865 3.753787 CCAGTTTTCCTTCCTGGCT 57.246 52.632 0.00 0.00 39.36 4.75
799 959 2.593468 GAAGCAGGCCGGCACTGATA 62.593 60.000 34.96 0.00 38.20 2.15
859 1020 1.137282 GTTTTGGGGGCGTCAAGAAAA 59.863 47.619 0.00 0.00 0.00 2.29
965 1127 0.666913 GGGTATACTCTCGCGCTTGA 59.333 55.000 5.56 2.04 0.00 3.02
968 1130 1.152819 TGGGGTATACTCTCGCGCT 60.153 57.895 5.56 0.00 0.00 5.92
1161 1335 3.036783 CTCGAGGACGGTGTCGGTC 62.037 68.421 3.91 0.00 41.39 4.79
1487 1670 3.431673 TGAGCCCAACATCATACAACA 57.568 42.857 0.00 0.00 0.00 3.33
1801 1984 4.678309 GCACTTACTAACTCAGCTACTGGG 60.678 50.000 0.00 0.00 38.07 4.45
1802 1985 4.158764 AGCACTTACTAACTCAGCTACTGG 59.841 45.833 0.00 0.00 31.51 4.00
1803 1986 5.317733 AGCACTTACTAACTCAGCTACTG 57.682 43.478 0.00 0.00 0.00 2.74
1832 2015 1.806542 CTGGGTTGACAGGAACAATCG 59.193 52.381 0.00 0.00 34.84 3.34
1887 2077 5.920193 ATATGGAAATTGTCAGTTGGTGG 57.080 39.130 0.00 0.00 0.00 4.61
1974 2178 6.954684 CCCTATATTAGGTGACCAGTCATAGT 59.045 42.308 3.63 0.00 44.73 2.12
1975 2179 6.954684 ACCCTATATTAGGTGACCAGTCATAG 59.045 42.308 3.63 5.48 44.73 2.23
2115 2319 2.711009 CCCCTTCCCATAGTTATCAGCA 59.289 50.000 0.00 0.00 0.00 4.41
2122 2326 2.661176 TGTCTCCCCTTCCCATAGTT 57.339 50.000 0.00 0.00 0.00 2.24
2165 2369 5.485620 TCATGAAAGAGAGTGGACTTGATG 58.514 41.667 0.00 0.00 0.00 3.07
2478 2686 2.379732 CAGATGTGACACGCGAGATAG 58.620 52.381 15.93 0.00 0.00 2.08
2813 3021 3.729462 CGTCGTCCTCTTTCTCATCACTC 60.729 52.174 0.00 0.00 0.00 3.51
2819 3027 1.601166 TGTCGTCGTCCTCTTTCTCA 58.399 50.000 0.00 0.00 0.00 3.27
2852 3060 2.046988 CCATCTGCCACGTCAGCA 60.047 61.111 9.30 9.30 38.82 4.41
2884 3098 8.239998 GCTGCAATATACCCATAATCTTTTCTC 58.760 37.037 0.00 0.00 0.00 2.87
3154 3380 9.927668 CTTTCCTTGGAATTATTTTCTAAAGCA 57.072 29.630 2.65 0.00 0.00 3.91
3191 3426 3.926527 AGCATATATGTATTGGCGACACG 59.073 43.478 14.14 0.00 42.67 4.49
3196 3431 2.929398 TGCGAGCATATATGTATTGGCG 59.071 45.455 14.14 9.64 0.00 5.69
3198 3433 7.307694 ACAAAATGCGAGCATATATGTATTGG 58.692 34.615 14.14 0.66 35.31 3.16
3200 3435 9.992910 CATACAAAATGCGAGCATATATGTATT 57.007 29.630 24.47 15.40 37.41 1.89
3203 3438 6.430925 ACCATACAAAATGCGAGCATATATGT 59.569 34.615 14.14 16.57 35.31 2.29
3205 3440 7.452880 AACCATACAAAATGCGAGCATATAT 57.547 32.000 11.25 4.97 35.31 0.86
3209 3444 4.082300 TCAAACCATACAAAATGCGAGCAT 60.082 37.500 4.52 4.52 38.46 3.79
3210 3445 3.254411 TCAAACCATACAAAATGCGAGCA 59.746 39.130 0.00 0.00 0.00 4.26
3211 3446 3.832276 TCAAACCATACAAAATGCGAGC 58.168 40.909 0.00 0.00 0.00 5.03
3218 3453 9.722317 AGGGGAATAATATCAAACCATACAAAA 57.278 29.630 0.00 0.00 0.00 2.44
3282 3546 7.985752 ACAAATATTTAGAAACGGAGGGAGTAG 59.014 37.037 0.00 0.00 0.00 2.57
3284 3548 6.718294 ACAAATATTTAGAAACGGAGGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
3286 3550 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
3287 3551 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
3308 3572 9.912634 GTCATCCATTTGAAATGTCTTAAAAGA 57.087 29.630 15.93 4.75 0.00 2.52
3309 3573 9.918630 AGTCATCCATTTGAAATGTCTTAAAAG 57.081 29.630 15.93 0.00 0.00 2.27
3312 3576 9.513906 TGTAGTCATCCATTTGAAATGTCTTAA 57.486 29.630 15.93 0.00 0.00 1.85
3313 3577 9.685276 ATGTAGTCATCCATTTGAAATGTCTTA 57.315 29.630 15.93 0.50 0.00 2.10
3314 3578 8.585471 ATGTAGTCATCCATTTGAAATGTCTT 57.415 30.769 15.93 0.00 0.00 3.01
3315 3579 9.113838 GTATGTAGTCATCCATTTGAAATGTCT 57.886 33.333 15.93 8.79 35.70 3.41
3316 3580 8.064222 CGTATGTAGTCATCCATTTGAAATGTC 58.936 37.037 15.93 2.71 35.70 3.06
3317 3581 7.012327 CCGTATGTAGTCATCCATTTGAAATGT 59.988 37.037 15.93 0.07 35.70 2.71
3318 3582 7.226523 TCCGTATGTAGTCATCCATTTGAAATG 59.773 37.037 10.84 10.84 35.70 2.32
3319 3583 7.279615 TCCGTATGTAGTCATCCATTTGAAAT 58.720 34.615 0.00 0.00 35.70 2.17
3320 3584 6.645306 TCCGTATGTAGTCATCCATTTGAAA 58.355 36.000 0.00 0.00 35.70 2.69
3321 3585 6.228616 TCCGTATGTAGTCATCCATTTGAA 57.771 37.500 0.00 0.00 35.70 2.69
3322 3586 5.862678 TCCGTATGTAGTCATCCATTTGA 57.137 39.130 0.00 0.00 35.70 2.69
3323 3587 5.991606 ACATCCGTATGTAGTCATCCATTTG 59.008 40.000 0.00 0.00 44.66 2.32
3324 3588 6.174720 ACATCCGTATGTAGTCATCCATTT 57.825 37.500 0.00 0.00 44.66 2.32
3325 3589 5.808366 ACATCCGTATGTAGTCATCCATT 57.192 39.130 0.00 0.00 44.66 3.16
3361 3625 9.944376 AGCAAAATGAGTAAATCTACACTCTAA 57.056 29.630 3.65 0.00 41.46 2.10
3362 3626 9.944376 AAGCAAAATGAGTAAATCTACACTCTA 57.056 29.630 3.65 0.00 41.46 2.43
3363 3627 8.854614 AAGCAAAATGAGTAAATCTACACTCT 57.145 30.769 3.65 0.00 41.46 3.24
3364 3628 7.900352 CGAAGCAAAATGAGTAAATCTACACTC 59.100 37.037 0.00 0.00 41.31 3.51
3365 3629 7.387948 ACGAAGCAAAATGAGTAAATCTACACT 59.612 33.333 0.00 0.00 0.00 3.55
3366 3630 7.519002 ACGAAGCAAAATGAGTAAATCTACAC 58.481 34.615 0.00 0.00 0.00 2.90
3367 3631 7.667043 ACGAAGCAAAATGAGTAAATCTACA 57.333 32.000 0.00 0.00 0.00 2.74
3368 3632 9.638300 CATACGAAGCAAAATGAGTAAATCTAC 57.362 33.333 0.00 0.00 0.00 2.59
3369 3633 9.378551 ACATACGAAGCAAAATGAGTAAATCTA 57.621 29.630 0.00 0.00 0.00 1.98
3370 3634 8.268850 ACATACGAAGCAAAATGAGTAAATCT 57.731 30.769 0.00 0.00 0.00 2.40
3371 3635 9.638300 CTACATACGAAGCAAAATGAGTAAATC 57.362 33.333 0.00 0.00 0.00 2.17
3372 3636 9.162764 ACTACATACGAAGCAAAATGAGTAAAT 57.837 29.630 0.00 0.00 0.00 1.40
3373 3637 8.542497 ACTACATACGAAGCAAAATGAGTAAA 57.458 30.769 0.00 0.00 0.00 2.01
3374 3638 7.815549 TGACTACATACGAAGCAAAATGAGTAA 59.184 33.333 0.00 0.00 0.00 2.24
3375 3639 7.274904 GTGACTACATACGAAGCAAAATGAGTA 59.725 37.037 0.00 0.00 0.00 2.59
3376 3640 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
3377 3641 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
3378 3642 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
3379 3643 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
3380 3644 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
3381 3645 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
3382 3646 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
3383 3647 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
3384 3648 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
3385 3649 4.091509 CCAACAAGTGACTACATACGAAGC 59.908 45.833 0.00 0.00 0.00 3.86
3386 3650 5.466819 TCCAACAAGTGACTACATACGAAG 58.533 41.667 0.00 0.00 0.00 3.79
3387 3651 5.456548 TCCAACAAGTGACTACATACGAA 57.543 39.130 0.00 0.00 0.00 3.85
3388 3652 5.456548 TTCCAACAAGTGACTACATACGA 57.543 39.130 0.00 0.00 0.00 3.43
3389 3653 6.100004 AGATTCCAACAAGTGACTACATACG 58.900 40.000 0.00 0.00 0.00 3.06
3390 3654 7.324178 AGAGATTCCAACAAGTGACTACATAC 58.676 38.462 0.00 0.00 0.00 2.39
3391 3655 7.482169 AGAGATTCCAACAAGTGACTACATA 57.518 36.000 0.00 0.00 0.00 2.29
3392 3656 6.365970 AGAGATTCCAACAAGTGACTACAT 57.634 37.500 0.00 0.00 0.00 2.29
3393 3657 5.808366 AGAGATTCCAACAAGTGACTACA 57.192 39.130 0.00 0.00 0.00 2.74
3394 3658 9.522804 CTTATAGAGATTCCAACAAGTGACTAC 57.477 37.037 0.00 0.00 0.00 2.73
3395 3659 8.696374 CCTTATAGAGATTCCAACAAGTGACTA 58.304 37.037 0.00 0.00 0.00 2.59
3396 3660 7.400339 TCCTTATAGAGATTCCAACAAGTGACT 59.600 37.037 0.00 0.00 0.00 3.41
3397 3661 7.492994 GTCCTTATAGAGATTCCAACAAGTGAC 59.507 40.741 0.00 0.00 0.00 3.67
3398 3662 7.180229 TGTCCTTATAGAGATTCCAACAAGTGA 59.820 37.037 0.00 0.00 0.00 3.41
3399 3663 7.331026 TGTCCTTATAGAGATTCCAACAAGTG 58.669 38.462 0.00 0.00 0.00 3.16
3400 3664 7.496346 TGTCCTTATAGAGATTCCAACAAGT 57.504 36.000 0.00 0.00 0.00 3.16
3401 3665 8.792830 TTTGTCCTTATAGAGATTCCAACAAG 57.207 34.615 0.00 0.00 0.00 3.16
3413 3677 9.991906 CCGTTCCTAAATATTTGTCCTTATAGA 57.008 33.333 11.05 0.00 0.00 1.98
3414 3678 9.991906 TCCGTTCCTAAATATTTGTCCTTATAG 57.008 33.333 11.05 0.00 0.00 1.31
3415 3679 9.991906 CTCCGTTCCTAAATATTTGTCCTTATA 57.008 33.333 11.05 0.00 0.00 0.98
3416 3680 8.491958 ACTCCGTTCCTAAATATTTGTCCTTAT 58.508 33.333 11.05 0.00 0.00 1.73
3417 3681 7.854337 ACTCCGTTCCTAAATATTTGTCCTTA 58.146 34.615 11.05 0.00 0.00 2.69
3418 3682 6.718294 ACTCCGTTCCTAAATATTTGTCCTT 58.282 36.000 11.05 0.00 0.00 3.36
3419 3683 6.309389 ACTCCGTTCCTAAATATTTGTCCT 57.691 37.500 11.05 0.00 0.00 3.85
3420 3684 8.672823 AATACTCCGTTCCTAAATATTTGTCC 57.327 34.615 11.05 0.00 0.00 4.02
3422 3686 9.901172 AGAAATACTCCGTTCCTAAATATTTGT 57.099 29.630 11.05 0.00 0.00 2.83
3424 3688 9.901172 ACAGAAATACTCCGTTCCTAAATATTT 57.099 29.630 5.89 5.89 0.00 1.40
3428 3692 9.901172 AAATACAGAAATACTCCGTTCCTAAAT 57.099 29.630 0.00 0.00 0.00 1.40
3429 3693 9.374838 GAAATACAGAAATACTCCGTTCCTAAA 57.625 33.333 0.00 0.00 0.00 1.85
3430 3694 7.703621 CGAAATACAGAAATACTCCGTTCCTAA 59.296 37.037 0.00 0.00 0.00 2.69
3431 3695 7.148018 ACGAAATACAGAAATACTCCGTTCCTA 60.148 37.037 0.00 0.00 0.00 2.94
3432 3696 6.040878 CGAAATACAGAAATACTCCGTTCCT 58.959 40.000 0.00 0.00 0.00 3.36
3433 3697 5.809051 ACGAAATACAGAAATACTCCGTTCC 59.191 40.000 0.00 0.00 0.00 3.62
3434 3698 6.882458 ACGAAATACAGAAATACTCCGTTC 57.118 37.500 0.00 0.00 0.00 3.95
3435 3699 8.937634 AATACGAAATACAGAAATACTCCGTT 57.062 30.769 0.00 0.00 0.00 4.44
3436 3700 8.192774 TGAATACGAAATACAGAAATACTCCGT 58.807 33.333 0.00 0.00 0.00 4.69
3437 3701 8.570096 TGAATACGAAATACAGAAATACTCCG 57.430 34.615 0.00 0.00 0.00 4.63
3438 3702 9.745880 TCTGAATACGAAATACAGAAATACTCC 57.254 33.333 0.00 0.00 35.20 3.85
3445 3709 8.604035 GCTTGATTCTGAATACGAAATACAGAA 58.396 33.333 2.28 0.00 46.48 3.02
3446 3710 7.981789 AGCTTGATTCTGAATACGAAATACAGA 59.018 33.333 2.28 0.00 36.11 3.41
3447 3711 8.060679 CAGCTTGATTCTGAATACGAAATACAG 58.939 37.037 2.28 0.00 33.54 2.74
3448 3712 7.763985 TCAGCTTGATTCTGAATACGAAATACA 59.236 33.333 2.28 0.00 37.61 2.29
3449 3713 8.131455 TCAGCTTGATTCTGAATACGAAATAC 57.869 34.615 2.28 0.00 37.61 1.89
3450 3714 8.716646 TTCAGCTTGATTCTGAATACGAAATA 57.283 30.769 2.28 0.00 43.34 1.40
3451 3715 7.615582 TTCAGCTTGATTCTGAATACGAAAT 57.384 32.000 2.28 0.00 43.34 2.17
3460 3724 7.930325 AGATTCGATAATTCAGCTTGATTCTGA 59.070 33.333 0.00 0.00 38.67 3.27
3461 3725 8.085720 AGATTCGATAATTCAGCTTGATTCTG 57.914 34.615 0.00 0.00 0.00 3.02
3462 3726 7.930325 TGAGATTCGATAATTCAGCTTGATTCT 59.070 33.333 0.00 0.00 0.00 2.40
3463 3727 8.081208 TGAGATTCGATAATTCAGCTTGATTC 57.919 34.615 0.00 0.00 0.00 2.52
3464 3728 8.618702 ATGAGATTCGATAATTCAGCTTGATT 57.381 30.769 0.00 0.00 0.00 2.57
3465 3729 9.887629 ATATGAGATTCGATAATTCAGCTTGAT 57.112 29.630 0.00 0.00 0.00 2.57
3466 3730 9.716531 AATATGAGATTCGATAATTCAGCTTGA 57.283 29.630 0.00 0.00 0.00 3.02
3475 3739 9.587772 CCGTTCCTAAATATGAGATTCGATAAT 57.412 33.333 0.00 0.00 0.00 1.28
3476 3740 8.799367 TCCGTTCCTAAATATGAGATTCGATAA 58.201 33.333 0.00 0.00 0.00 1.75
3477 3741 8.344446 TCCGTTCCTAAATATGAGATTCGATA 57.656 34.615 0.00 0.00 0.00 2.92
3478 3742 7.039644 ACTCCGTTCCTAAATATGAGATTCGAT 60.040 37.037 0.00 0.00 0.00 3.59
3479 3743 6.264744 ACTCCGTTCCTAAATATGAGATTCGA 59.735 38.462 0.00 0.00 0.00 3.71
3480 3744 6.448006 ACTCCGTTCCTAAATATGAGATTCG 58.552 40.000 0.00 0.00 0.00 3.34
3481 3745 9.930693 AATACTCCGTTCCTAAATATGAGATTC 57.069 33.333 0.00 0.00 0.00 2.52
3483 3747 9.930693 GAAATACTCCGTTCCTAAATATGAGAT 57.069 33.333 0.00 0.00 0.00 2.75
3484 3748 9.144298 AGAAATACTCCGTTCCTAAATATGAGA 57.856 33.333 0.00 0.00 0.00 3.27
3485 3749 9.197694 CAGAAATACTCCGTTCCTAAATATGAG 57.802 37.037 0.00 0.00 0.00 2.90
3486 3750 8.701895 ACAGAAATACTCCGTTCCTAAATATGA 58.298 33.333 0.00 0.00 0.00 2.15
3487 3751 8.888579 ACAGAAATACTCCGTTCCTAAATATG 57.111 34.615 0.00 0.00 0.00 1.78
3490 3754 9.901172 AAATACAGAAATACTCCGTTCCTAAAT 57.099 29.630 0.00 0.00 0.00 1.40
3491 3755 9.374838 GAAATACAGAAATACTCCGTTCCTAAA 57.625 33.333 0.00 0.00 0.00 1.85
3492 3756 7.703621 CGAAATACAGAAATACTCCGTTCCTAA 59.296 37.037 0.00 0.00 0.00 2.69
3493 3757 7.148018 ACGAAATACAGAAATACTCCGTTCCTA 60.148 37.037 0.00 0.00 0.00 2.94
3494 3758 6.040878 CGAAATACAGAAATACTCCGTTCCT 58.959 40.000 0.00 0.00 0.00 3.36
3495 3759 5.809051 ACGAAATACAGAAATACTCCGTTCC 59.191 40.000 0.00 0.00 0.00 3.62
3496 3760 6.882458 ACGAAATACAGAAATACTCCGTTC 57.118 37.500 0.00 0.00 0.00 3.95
3497 3761 8.937634 AATACGAAATACAGAAATACTCCGTT 57.062 30.769 0.00 0.00 0.00 4.44
3498 3762 8.192774 TGAATACGAAATACAGAAATACTCCGT 58.807 33.333 0.00 0.00 0.00 4.69
3499 3763 8.570096 TGAATACGAAATACAGAAATACTCCG 57.430 34.615 0.00 0.00 0.00 4.63
3500 3764 9.745880 TCTGAATACGAAATACAGAAATACTCC 57.254 33.333 0.00 0.00 35.20 3.85
3507 3771 8.604035 GCTTGATTCTGAATACGAAATACAGAA 58.396 33.333 2.28 0.00 46.48 3.02
3508 3772 7.981789 AGCTTGATTCTGAATACGAAATACAGA 59.018 33.333 2.28 0.00 36.11 3.41
3509 3773 8.060679 CAGCTTGATTCTGAATACGAAATACAG 58.939 37.037 2.28 0.00 33.54 2.74
3510 3774 7.763985 TCAGCTTGATTCTGAATACGAAATACA 59.236 33.333 2.28 0.00 37.61 2.29
3511 3775 8.131455 TCAGCTTGATTCTGAATACGAAATAC 57.869 34.615 2.28 0.00 37.61 1.89
3512 3776 8.716646 TTCAGCTTGATTCTGAATACGAAATA 57.283 30.769 2.28 0.00 43.34 1.40
3513 3777 7.615582 TTCAGCTTGATTCTGAATACGAAAT 57.384 32.000 2.28 0.00 43.34 2.17
3543 3807 6.767423 ACCTACTCCTAGTAAACGAGAGATTC 59.233 42.308 0.00 0.00 29.00 2.52
3546 3810 5.426504 CACCTACTCCTAGTAAACGAGAGA 58.573 45.833 0.00 0.00 29.00 3.10
3556 3820 1.078989 ACCTTGGCACCTACTCCTAGT 59.921 52.381 0.00 0.00 0.00 2.57
3558 3822 2.337359 AACCTTGGCACCTACTCCTA 57.663 50.000 0.00 0.00 0.00 2.94
3559 3823 2.337359 TAACCTTGGCACCTACTCCT 57.663 50.000 0.00 0.00 0.00 3.69
3560 3824 3.646736 AATAACCTTGGCACCTACTCC 57.353 47.619 0.00 0.00 0.00 3.85
3561 3825 4.407945 TCCTAATAACCTTGGCACCTACTC 59.592 45.833 0.00 0.00 0.00 2.59
3562 3826 4.368067 TCCTAATAACCTTGGCACCTACT 58.632 43.478 0.00 0.00 0.00 2.57
3563 3827 4.163649 ACTCCTAATAACCTTGGCACCTAC 59.836 45.833 0.00 0.00 0.00 3.18
3573 3837 4.643784 CACGTGTCCTACTCCTAATAACCT 59.356 45.833 7.58 0.00 0.00 3.50
3577 3841 3.559069 CCCACGTGTCCTACTCCTAATA 58.441 50.000 15.65 0.00 0.00 0.98
3581 3845 1.982938 GCCCACGTGTCCTACTCCT 60.983 63.158 15.65 0.00 0.00 3.69
3582 3846 1.823169 TTGCCCACGTGTCCTACTCC 61.823 60.000 15.65 0.00 0.00 3.85
3584 3848 0.470766 TTTTGCCCACGTGTCCTACT 59.529 50.000 15.65 0.00 0.00 2.57
3585 3849 0.872388 CTTTTGCCCACGTGTCCTAC 59.128 55.000 15.65 0.00 0.00 3.18
3587 3851 0.110486 ATCTTTTGCCCACGTGTCCT 59.890 50.000 15.65 0.00 0.00 3.85
3588 3852 0.240945 CATCTTTTGCCCACGTGTCC 59.759 55.000 15.65 5.25 0.00 4.02
3606 3870 0.696143 TGTTGACCCTTGACCCCTCA 60.696 55.000 0.00 0.00 0.00 3.86
3608 3872 1.716028 GGTGTTGACCCTTGACCCCT 61.716 60.000 0.00 0.00 36.03 4.79
3623 3887 0.179094 TGCTTCGACTTCAACGGTGT 60.179 50.000 0.00 0.00 0.00 4.16
3661 3925 1.817099 GGCAGAGATGCAAGACCGG 60.817 63.158 0.00 0.00 36.33 5.28
3663 3927 1.364626 CGTGGCAGAGATGCAAGACC 61.365 60.000 2.29 0.00 36.33 3.85
3671 3940 2.738643 CGGTTATCAACGTGGCAGAGAT 60.739 50.000 0.00 0.00 0.00 2.75
3718 3987 5.311265 AGCATGGTTGATGTATATCCTGTG 58.689 41.667 0.00 0.00 34.14 3.66
3719 3988 5.555017 GAGCATGGTTGATGTATATCCTGT 58.445 41.667 0.00 0.00 34.14 4.00
3734 4003 2.288213 CGGTCATACATACGAGCATGGT 60.288 50.000 0.00 0.00 0.00 3.55
3735 4004 2.288213 ACGGTCATACATACGAGCATGG 60.288 50.000 0.00 0.00 0.00 3.66
3743 4012 4.733887 CGAGACAAAGACGGTCATACATAC 59.266 45.833 11.27 0.00 37.74 2.39
3749 4018 0.603569 AGCGAGACAAAGACGGTCAT 59.396 50.000 11.27 0.00 37.74 3.06
3757 4026 1.215014 TGCGTCACAGCGAGACAAAG 61.215 55.000 6.95 0.00 40.67 2.77
3760 4029 2.354656 GTGCGTCACAGCGAGACA 60.355 61.111 5.30 0.00 40.67 3.41
3774 4043 2.012673 CTTGCTATGGAGAAGGTGTGC 58.987 52.381 0.00 0.00 0.00 4.57
3779 4048 4.158579 GGGTTTTTCTTGCTATGGAGAAGG 59.841 45.833 0.00 0.00 33.77 3.46
3837 4106 4.675565 CGGTCATACATACGTTGATGACTC 59.324 45.833 21.12 14.53 44.91 3.36
3838 4107 4.097437 ACGGTCATACATACGTTGATGACT 59.903 41.667 21.12 8.57 44.91 3.41
3840 4109 4.642445 ACGGTCATACATACGTTGATGA 57.358 40.909 5.33 1.93 35.90 2.92
3846 4115 4.970662 AGTACAACGGTCATACATACGT 57.029 40.909 0.00 0.00 41.88 3.57
3847 4116 5.334319 TGAAGTACAACGGTCATACATACG 58.666 41.667 0.00 0.00 0.00 3.06
3848 4117 6.755141 ACATGAAGTACAACGGTCATACATAC 59.245 38.462 0.00 0.00 30.23 2.39
3850 4119 5.730550 ACATGAAGTACAACGGTCATACAT 58.269 37.500 0.00 0.00 30.23 2.29
3851 4120 5.142061 ACATGAAGTACAACGGTCATACA 57.858 39.130 0.00 0.00 30.23 2.29
3852 4121 5.220154 CGAACATGAAGTACAACGGTCATAC 60.220 44.000 0.00 0.00 30.23 2.39
3853 4122 4.860352 CGAACATGAAGTACAACGGTCATA 59.140 41.667 0.00 0.00 30.23 2.15
3854 4123 3.678072 CGAACATGAAGTACAACGGTCAT 59.322 43.478 0.00 0.00 31.03 3.06
3855 4124 3.054166 CGAACATGAAGTACAACGGTCA 58.946 45.455 0.00 0.00 0.00 4.02
3856 4125 2.410730 CCGAACATGAAGTACAACGGTC 59.589 50.000 0.00 0.00 33.90 4.79
3857 4126 2.409975 CCGAACATGAAGTACAACGGT 58.590 47.619 0.00 0.00 33.90 4.83
3858 4127 1.127951 GCCGAACATGAAGTACAACGG 59.872 52.381 0.00 0.00 37.70 4.44
3860 4129 1.127951 CGGCCGAACATGAAGTACAAC 59.872 52.381 24.07 0.00 0.00 3.32
3862 4131 1.017177 GCGGCCGAACATGAAGTACA 61.017 55.000 33.48 0.00 0.00 2.90
3863 4132 1.702491 GGCGGCCGAACATGAAGTAC 61.702 60.000 33.48 5.78 0.00 2.73
3911 4587 1.750399 GTGGCCGTCCTGCATCAAT 60.750 57.895 0.00 0.00 0.00 2.57
3946 4622 4.758251 TGATGGGCAGCACGGTCG 62.758 66.667 0.00 0.00 0.00 4.79
3947 4623 2.124570 ATGATGGGCAGCACGGTC 60.125 61.111 0.00 0.00 0.00 4.79
3948 4624 2.124570 GATGATGGGCAGCACGGT 60.125 61.111 0.00 0.00 31.86 4.83
3969 4645 3.114616 CTTGCCCACTCTGCGACG 61.115 66.667 0.00 0.00 0.00 5.12
3971 4647 1.004560 CTTCTTGCCCACTCTGCGA 60.005 57.895 0.00 0.00 0.00 5.10
3977 4653 1.302033 CAGCGTCTTCTTGCCCACT 60.302 57.895 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.