Multiple sequence alignment - TraesCS7B01G248700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G248700 chr7B 100.000 3263 0 0 1 3263 458988475 458991737 0.000000e+00 6026
1 TraesCS7B01G248700 chr7B 94.000 250 15 0 30 279 458983256 458983505 2.380000e-101 379
2 TraesCS7B01G248700 chr7B 92.241 116 9 0 3148 3263 436666733 436666848 7.240000e-37 165
3 TraesCS7B01G248700 chr7B 89.744 117 9 3 3148 3263 666630017 666629903 2.620000e-31 147
4 TraesCS7B01G248700 chr7D 92.930 2928 97 36 288 3148 442305731 442308615 0.000000e+00 4159
5 TraesCS7B01G248700 chr7A 91.441 2442 108 48 276 2669 493355482 493357870 0.000000e+00 3258
6 TraesCS7B01G248700 chr2D 90.633 395 26 8 1923 2307 627324645 627325038 6.240000e-142 514
7 TraesCS7B01G248700 chr2D 95.610 205 9 0 1923 2127 425214339 425214543 2.430000e-86 329
8 TraesCS7B01G248700 chr5B 94.681 282 14 1 1 281 592315244 592314963 1.390000e-118 436
9 TraesCS7B01G248700 chr5B 95.885 243 9 1 33 274 592329086 592328844 3.050000e-105 392
10 TraesCS7B01G248700 chr1B 94.624 279 13 2 1 278 557403005 557402728 6.470000e-117 431
11 TraesCS7B01G248700 chr1B 93.145 248 15 2 33 279 557408228 557407982 2.390000e-96 363
12 TraesCS7B01G248700 chr1B 93.966 116 7 0 3148 3263 122921020 122921135 3.350000e-40 176
13 TraesCS7B01G248700 chr1B 89.744 117 10 2 3148 3263 647535071 647534956 7.290000e-32 148
14 TraesCS7B01G248700 chr6B 93.525 278 18 0 1 278 216623525 216623248 6.510000e-112 414
15 TraesCS7B01G248700 chr6B 95.041 242 12 0 33 274 216628741 216628500 6.610000e-102 381
16 TraesCS7B01G248700 chr3B 95.473 243 10 1 38 279 200364535 200364293 1.420000e-103 387
17 TraesCS7B01G248700 chr3B 93.103 116 8 0 3148 3263 29531771 29531656 1.560000e-38 171
18 TraesCS7B01G248700 chr4A 89.399 283 25 5 1 280 148039089 148039369 5.180000e-93 351
19 TraesCS7B01G248700 chr2B 91.379 116 10 0 3148 3263 43381719 43381834 3.370000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G248700 chr7B 458988475 458991737 3262 False 6026 6026 100.000 1 3263 1 chr7B.!!$F3 3262
1 TraesCS7B01G248700 chr7D 442305731 442308615 2884 False 4159 4159 92.930 288 3148 1 chr7D.!!$F1 2860
2 TraesCS7B01G248700 chr7A 493355482 493357870 2388 False 3258 3258 91.441 276 2669 1 chr7A.!!$F1 2393

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
861 884 0.034059 CCACCACACACTCCTCTCAC 59.966 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2475 2545 0.315869 GTAACAGCACACACGCACAC 60.316 55.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.203788 AGGGCGTCCTGGTTCTCA 60.204 61.111 8.41 0.00 42.98 3.27
18 19 1.841556 AGGGCGTCCTGGTTCTCAA 60.842 57.895 8.41 0.00 42.98 3.02
19 20 1.376037 GGGCGTCCTGGTTCTCAAG 60.376 63.158 0.00 0.00 0.00 3.02
20 21 1.376037 GGCGTCCTGGTTCTCAAGG 60.376 63.158 0.00 0.00 0.00 3.61
21 22 1.376037 GCGTCCTGGTTCTCAAGGG 60.376 63.158 0.00 0.00 0.00 3.95
22 23 1.296715 CGTCCTGGTTCTCAAGGGG 59.703 63.158 0.00 0.00 0.00 4.79
23 24 1.192146 CGTCCTGGTTCTCAAGGGGA 61.192 60.000 0.00 0.00 0.00 4.81
24 25 0.615850 GTCCTGGTTCTCAAGGGGAG 59.384 60.000 0.00 0.00 45.49 4.30
25 26 0.547712 TCCTGGTTCTCAAGGGGAGG 60.548 60.000 0.00 0.00 44.19 4.30
26 27 1.566298 CCTGGTTCTCAAGGGGAGGG 61.566 65.000 0.00 0.00 44.19 4.30
27 28 1.541368 TGGTTCTCAAGGGGAGGGG 60.541 63.158 0.00 0.00 44.19 4.79
28 29 2.677848 GTTCTCAAGGGGAGGGGC 59.322 66.667 0.00 0.00 44.19 5.80
29 30 2.209809 TTCTCAAGGGGAGGGGCA 59.790 61.111 0.00 0.00 44.19 5.36
30 31 1.230281 TTCTCAAGGGGAGGGGCAT 60.230 57.895 0.00 0.00 44.19 4.40
31 32 1.281925 TTCTCAAGGGGAGGGGCATC 61.282 60.000 0.00 0.00 44.19 3.91
32 33 1.695597 CTCAAGGGGAGGGGCATCT 60.696 63.158 0.00 0.00 40.13 2.90
33 34 0.400525 CTCAAGGGGAGGGGCATCTA 60.401 60.000 0.00 0.00 40.13 1.98
34 35 0.045623 TCAAGGGGAGGGGCATCTAA 59.954 55.000 0.00 0.00 0.00 2.10
35 36 1.152649 CAAGGGGAGGGGCATCTAAT 58.847 55.000 0.00 0.00 0.00 1.73
36 37 1.152649 AAGGGGAGGGGCATCTAATG 58.847 55.000 0.00 0.00 0.00 1.90
37 38 0.271927 AGGGGAGGGGCATCTAATGA 59.728 55.000 0.00 0.00 0.00 2.57
38 39 0.402121 GGGGAGGGGCATCTAATGAC 59.598 60.000 0.00 0.00 37.65 3.06
44 45 3.027419 GGCATCTAATGACCTGGGC 57.973 57.895 0.00 0.00 29.82 5.36
45 46 0.475906 GGCATCTAATGACCTGGGCT 59.524 55.000 0.00 0.00 29.82 5.19
46 47 1.602311 GCATCTAATGACCTGGGCTG 58.398 55.000 0.00 0.00 0.00 4.85
47 48 1.133976 GCATCTAATGACCTGGGCTGT 60.134 52.381 0.00 0.00 0.00 4.40
48 49 2.569059 CATCTAATGACCTGGGCTGTG 58.431 52.381 0.00 0.00 0.00 3.66
49 50 0.253044 TCTAATGACCTGGGCTGTGC 59.747 55.000 0.00 0.00 0.00 4.57
60 61 4.626081 GCTGTGCCCACGAGGTGT 62.626 66.667 0.00 0.00 38.26 4.16
69 70 2.027605 ACGAGGTGTGCGTGAGTG 59.972 61.111 0.00 0.00 40.94 3.51
70 71 2.734723 CGAGGTGTGCGTGAGTGG 60.735 66.667 0.00 0.00 0.00 4.00
71 72 3.044305 GAGGTGTGCGTGAGTGGC 61.044 66.667 0.00 0.00 0.00 5.01
72 73 4.626081 AGGTGTGCGTGAGTGGCC 62.626 66.667 0.00 0.00 0.00 5.36
73 74 4.626081 GGTGTGCGTGAGTGGCCT 62.626 66.667 3.32 0.00 0.00 5.19
74 75 3.349006 GTGTGCGTGAGTGGCCTG 61.349 66.667 3.32 0.00 0.00 4.85
76 77 4.996434 GTGCGTGAGTGGCCTGCT 62.996 66.667 3.32 1.36 0.00 4.24
77 78 4.994471 TGCGTGAGTGGCCTGCTG 62.994 66.667 3.32 0.00 0.00 4.41
100 101 2.434331 GCCCACTGTGGCCTGTAA 59.566 61.111 21.47 0.00 46.11 2.41
101 102 1.000896 GCCCACTGTGGCCTGTAAT 60.001 57.895 21.47 0.00 46.11 1.89
102 103 1.315257 GCCCACTGTGGCCTGTAATG 61.315 60.000 21.47 6.22 46.11 1.90
103 104 0.327924 CCCACTGTGGCCTGTAATGA 59.672 55.000 21.47 0.00 35.79 2.57
104 105 1.064463 CCCACTGTGGCCTGTAATGAT 60.064 52.381 21.47 0.00 35.79 2.45
105 106 2.172505 CCCACTGTGGCCTGTAATGATA 59.827 50.000 21.47 0.00 35.79 2.15
106 107 3.181440 CCCACTGTGGCCTGTAATGATAT 60.181 47.826 21.47 0.00 35.79 1.63
107 108 4.067896 CCACTGTGGCCTGTAATGATATC 58.932 47.826 14.87 0.00 0.00 1.63
108 109 4.202398 CCACTGTGGCCTGTAATGATATCT 60.202 45.833 14.87 0.00 0.00 1.98
109 110 5.012046 CCACTGTGGCCTGTAATGATATCTA 59.988 44.000 14.87 0.00 0.00 1.98
110 111 5.928839 CACTGTGGCCTGTAATGATATCTAC 59.071 44.000 3.32 0.00 0.00 2.59
111 112 5.841237 ACTGTGGCCTGTAATGATATCTACT 59.159 40.000 3.32 0.00 0.00 2.57
112 113 6.327626 ACTGTGGCCTGTAATGATATCTACTT 59.672 38.462 3.32 0.00 0.00 2.24
113 114 7.509318 ACTGTGGCCTGTAATGATATCTACTTA 59.491 37.037 3.32 0.00 0.00 2.24
114 115 8.435931 TGTGGCCTGTAATGATATCTACTTAT 57.564 34.615 3.32 0.00 0.00 1.73
115 116 9.541884 TGTGGCCTGTAATGATATCTACTTATA 57.458 33.333 3.32 0.00 0.00 0.98
117 118 9.201989 TGGCCTGTAATGATATCTACTTATAGG 57.798 37.037 19.77 19.77 36.25 2.57
119 120 8.919145 GCCTGTAATGATATCTACTTATAGGCT 58.081 37.037 28.79 0.00 46.50 4.58
127 128 9.674068 TGATATCTACTTATAGGCTAGTGTGAG 57.326 37.037 3.98 0.00 0.00 3.51
128 129 9.116067 GATATCTACTTATAGGCTAGTGTGAGG 57.884 40.741 0.00 0.00 0.00 3.86
129 130 6.511017 TCTACTTATAGGCTAGTGTGAGGA 57.489 41.667 0.00 0.00 0.00 3.71
130 131 6.535540 TCTACTTATAGGCTAGTGTGAGGAG 58.464 44.000 0.00 0.00 0.00 3.69
131 132 5.390087 ACTTATAGGCTAGTGTGAGGAGA 57.610 43.478 0.00 0.00 0.00 3.71
132 133 5.381757 ACTTATAGGCTAGTGTGAGGAGAG 58.618 45.833 0.00 0.00 0.00 3.20
133 134 2.738587 TAGGCTAGTGTGAGGAGAGG 57.261 55.000 0.00 0.00 0.00 3.69
134 135 1.003646 AGGCTAGTGTGAGGAGAGGA 58.996 55.000 0.00 0.00 0.00 3.71
135 136 1.064017 AGGCTAGTGTGAGGAGAGGAG 60.064 57.143 0.00 0.00 0.00 3.69
136 137 1.398692 GCTAGTGTGAGGAGAGGAGG 58.601 60.000 0.00 0.00 0.00 4.30
137 138 1.064314 GCTAGTGTGAGGAGAGGAGGA 60.064 57.143 0.00 0.00 0.00 3.71
138 139 2.650322 CTAGTGTGAGGAGAGGAGGAC 58.350 57.143 0.00 0.00 0.00 3.85
139 140 0.780637 AGTGTGAGGAGAGGAGGACA 59.219 55.000 0.00 0.00 0.00 4.02
140 141 1.360852 AGTGTGAGGAGAGGAGGACAT 59.639 52.381 0.00 0.00 0.00 3.06
141 142 1.754226 GTGTGAGGAGAGGAGGACATC 59.246 57.143 0.00 0.00 0.00 3.06
142 143 1.028905 GTGAGGAGAGGAGGACATCG 58.971 60.000 0.00 0.00 31.71 3.84
143 144 0.919710 TGAGGAGAGGAGGACATCGA 59.080 55.000 0.00 0.00 31.71 3.59
144 145 1.285078 TGAGGAGAGGAGGACATCGAA 59.715 52.381 0.00 0.00 31.71 3.71
145 146 1.679153 GAGGAGAGGAGGACATCGAAC 59.321 57.143 0.00 0.00 31.71 3.95
146 147 1.286553 AGGAGAGGAGGACATCGAACT 59.713 52.381 0.00 0.00 31.71 3.01
147 148 1.407258 GGAGAGGAGGACATCGAACTG 59.593 57.143 0.00 0.00 31.71 3.16
148 149 2.096248 GAGAGGAGGACATCGAACTGT 58.904 52.381 0.00 0.00 31.71 3.55
149 150 3.280295 GAGAGGAGGACATCGAACTGTA 58.720 50.000 0.00 0.00 31.71 2.74
150 151 3.695060 GAGAGGAGGACATCGAACTGTAA 59.305 47.826 0.00 0.00 31.71 2.41
151 152 4.087182 AGAGGAGGACATCGAACTGTAAA 58.913 43.478 0.00 0.00 31.71 2.01
152 153 4.082136 AGAGGAGGACATCGAACTGTAAAC 60.082 45.833 0.00 0.00 31.71 2.01
153 154 3.833070 AGGAGGACATCGAACTGTAAACT 59.167 43.478 0.00 0.00 0.00 2.66
154 155 3.927142 GGAGGACATCGAACTGTAAACTG 59.073 47.826 0.00 0.00 0.00 3.16
155 156 4.321750 GGAGGACATCGAACTGTAAACTGA 60.322 45.833 0.00 0.00 0.00 3.41
156 157 5.209818 AGGACATCGAACTGTAAACTGAA 57.790 39.130 0.00 0.00 0.00 3.02
157 158 5.794894 AGGACATCGAACTGTAAACTGAAT 58.205 37.500 0.00 0.00 0.00 2.57
158 159 6.931838 AGGACATCGAACTGTAAACTGAATA 58.068 36.000 0.00 0.00 0.00 1.75
159 160 7.556844 AGGACATCGAACTGTAAACTGAATAT 58.443 34.615 0.00 0.00 0.00 1.28
160 161 7.707035 AGGACATCGAACTGTAAACTGAATATC 59.293 37.037 0.00 0.00 0.00 1.63
161 162 7.306051 GGACATCGAACTGTAAACTGAATATCG 60.306 40.741 0.00 0.00 0.00 2.92
162 163 7.033791 ACATCGAACTGTAAACTGAATATCGT 58.966 34.615 0.00 0.00 0.00 3.73
163 164 7.544566 ACATCGAACTGTAAACTGAATATCGTT 59.455 33.333 0.00 0.00 0.00 3.85
164 165 9.016623 CATCGAACTGTAAACTGAATATCGTTA 57.983 33.333 0.00 0.00 0.00 3.18
165 166 9.745880 ATCGAACTGTAAACTGAATATCGTTAT 57.254 29.630 0.00 0.00 0.00 1.89
166 167 9.577110 TCGAACTGTAAACTGAATATCGTTATT 57.423 29.630 0.00 0.00 0.00 1.40
167 168 9.831054 CGAACTGTAAACTGAATATCGTTATTC 57.169 33.333 16.12 16.12 42.70 1.75
169 170 9.886132 AACTGTAAACTGAATATCGTTATTCCT 57.114 29.630 18.91 5.97 42.02 3.36
175 176 9.503399 AAACTGAATATCGTTATTCCTAATCCC 57.497 33.333 18.91 0.00 42.02 3.85
176 177 8.202461 ACTGAATATCGTTATTCCTAATCCCA 57.798 34.615 18.91 3.07 42.02 4.37
177 178 8.656806 ACTGAATATCGTTATTCCTAATCCCAA 58.343 33.333 18.91 2.02 42.02 4.12
178 179 9.155975 CTGAATATCGTTATTCCTAATCCCAAG 57.844 37.037 18.91 6.82 42.02 3.61
179 180 7.606456 TGAATATCGTTATTCCTAATCCCAAGC 59.394 37.037 18.91 0.00 42.02 4.01
180 181 4.081322 TCGTTATTCCTAATCCCAAGCC 57.919 45.455 0.00 0.00 0.00 4.35
181 182 3.714798 TCGTTATTCCTAATCCCAAGCCT 59.285 43.478 0.00 0.00 0.00 4.58
182 183 4.165372 TCGTTATTCCTAATCCCAAGCCTT 59.835 41.667 0.00 0.00 0.00 4.35
183 184 4.515567 CGTTATTCCTAATCCCAAGCCTTC 59.484 45.833 0.00 0.00 0.00 3.46
184 185 3.602205 ATTCCTAATCCCAAGCCTTCC 57.398 47.619 0.00 0.00 0.00 3.46
185 186 2.286935 TCCTAATCCCAAGCCTTCCT 57.713 50.000 0.00 0.00 0.00 3.36
186 187 2.127708 TCCTAATCCCAAGCCTTCCTC 58.872 52.381 0.00 0.00 0.00 3.71
187 188 2.131023 CCTAATCCCAAGCCTTCCTCT 58.869 52.381 0.00 0.00 0.00 3.69
188 189 2.158696 CCTAATCCCAAGCCTTCCTCTG 60.159 54.545 0.00 0.00 0.00 3.35
189 190 1.673767 AATCCCAAGCCTTCCTCTGA 58.326 50.000 0.00 0.00 0.00 3.27
190 191 1.211456 ATCCCAAGCCTTCCTCTGAG 58.789 55.000 0.00 0.00 0.00 3.35
191 192 1.077858 CCCAAGCCTTCCTCTGAGC 60.078 63.158 0.00 0.00 0.00 4.26
192 193 1.560866 CCCAAGCCTTCCTCTGAGCT 61.561 60.000 0.00 0.00 37.10 4.09
193 194 0.327591 CCAAGCCTTCCTCTGAGCTT 59.672 55.000 0.00 0.00 46.10 3.74
194 195 1.271817 CCAAGCCTTCCTCTGAGCTTT 60.272 52.381 0.00 0.00 42.74 3.51
195 196 2.512705 CAAGCCTTCCTCTGAGCTTTT 58.487 47.619 0.00 0.00 42.74 2.27
196 197 2.889678 CAAGCCTTCCTCTGAGCTTTTT 59.110 45.455 0.00 0.00 42.74 1.94
197 198 2.789213 AGCCTTCCTCTGAGCTTTTTC 58.211 47.619 0.00 0.00 29.27 2.29
198 199 2.374839 AGCCTTCCTCTGAGCTTTTTCT 59.625 45.455 0.00 0.00 29.27 2.52
199 200 3.153130 GCCTTCCTCTGAGCTTTTTCTT 58.847 45.455 0.00 0.00 0.00 2.52
200 201 3.190327 GCCTTCCTCTGAGCTTTTTCTTC 59.810 47.826 0.00 0.00 0.00 2.87
201 202 3.755905 CCTTCCTCTGAGCTTTTTCTTCC 59.244 47.826 0.00 0.00 0.00 3.46
202 203 4.506448 CCTTCCTCTGAGCTTTTTCTTCCT 60.506 45.833 0.00 0.00 0.00 3.36
203 204 4.278975 TCCTCTGAGCTTTTTCTTCCTC 57.721 45.455 0.00 0.00 0.00 3.71
204 205 3.906846 TCCTCTGAGCTTTTTCTTCCTCT 59.093 43.478 0.00 0.00 0.00 3.69
205 206 4.020662 TCCTCTGAGCTTTTTCTTCCTCTC 60.021 45.833 0.00 0.00 0.00 3.20
206 207 4.252878 CTCTGAGCTTTTTCTTCCTCTCC 58.747 47.826 0.00 0.00 0.00 3.71
207 208 3.648067 TCTGAGCTTTTTCTTCCTCTCCA 59.352 43.478 0.00 0.00 0.00 3.86
208 209 4.103153 TCTGAGCTTTTTCTTCCTCTCCAA 59.897 41.667 0.00 0.00 0.00 3.53
209 210 4.392940 TGAGCTTTTTCTTCCTCTCCAAG 58.607 43.478 0.00 0.00 0.00 3.61
210 211 3.153130 AGCTTTTTCTTCCTCTCCAAGC 58.847 45.455 0.00 0.00 36.27 4.01
211 212 3.153130 GCTTTTTCTTCCTCTCCAAGCT 58.847 45.455 0.00 0.00 33.80 3.74
212 213 4.042187 AGCTTTTTCTTCCTCTCCAAGCTA 59.958 41.667 1.71 0.00 42.81 3.32
213 214 4.946772 GCTTTTTCTTCCTCTCCAAGCTAT 59.053 41.667 0.00 0.00 33.80 2.97
214 215 5.417266 GCTTTTTCTTCCTCTCCAAGCTATT 59.583 40.000 0.00 0.00 33.80 1.73
215 216 6.071672 GCTTTTTCTTCCTCTCCAAGCTATTT 60.072 38.462 0.00 0.00 33.80 1.40
216 217 7.454260 TTTTTCTTCCTCTCCAAGCTATTTC 57.546 36.000 0.00 0.00 0.00 2.17
217 218 4.762289 TCTTCCTCTCCAAGCTATTTCC 57.238 45.455 0.00 0.00 0.00 3.13
218 219 3.456277 TCTTCCTCTCCAAGCTATTTCCC 59.544 47.826 0.00 0.00 0.00 3.97
219 220 2.127708 TCCTCTCCAAGCTATTTCCCC 58.872 52.381 0.00 0.00 0.00 4.81
220 221 2.131023 CCTCTCCAAGCTATTTCCCCT 58.869 52.381 0.00 0.00 0.00 4.79
221 222 2.511637 CCTCTCCAAGCTATTTCCCCTT 59.488 50.000 0.00 0.00 0.00 3.95
222 223 3.053320 CCTCTCCAAGCTATTTCCCCTTT 60.053 47.826 0.00 0.00 0.00 3.11
223 224 3.950395 CTCTCCAAGCTATTTCCCCTTTG 59.050 47.826 0.00 0.00 0.00 2.77
224 225 3.333680 TCTCCAAGCTATTTCCCCTTTGT 59.666 43.478 0.00 0.00 0.00 2.83
225 226 3.696548 CTCCAAGCTATTTCCCCTTTGTC 59.303 47.826 0.00 0.00 0.00 3.18
226 227 3.333680 TCCAAGCTATTTCCCCTTTGTCT 59.666 43.478 0.00 0.00 0.00 3.41
227 228 3.696548 CCAAGCTATTTCCCCTTTGTCTC 59.303 47.826 0.00 0.00 0.00 3.36
228 229 3.653835 AGCTATTTCCCCTTTGTCTCC 57.346 47.619 0.00 0.00 0.00 3.71
229 230 2.919602 AGCTATTTCCCCTTTGTCTCCA 59.080 45.455 0.00 0.00 0.00 3.86
230 231 3.017442 GCTATTTCCCCTTTGTCTCCAC 58.983 50.000 0.00 0.00 0.00 4.02
231 232 2.604912 ATTTCCCCTTTGTCTCCACC 57.395 50.000 0.00 0.00 0.00 4.61
232 233 1.529744 TTTCCCCTTTGTCTCCACCT 58.470 50.000 0.00 0.00 0.00 4.00
233 234 2.426431 TTCCCCTTTGTCTCCACCTA 57.574 50.000 0.00 0.00 0.00 3.08
234 235 1.652947 TCCCCTTTGTCTCCACCTAC 58.347 55.000 0.00 0.00 0.00 3.18
235 236 0.618981 CCCCTTTGTCTCCACCTACC 59.381 60.000 0.00 0.00 0.00 3.18
236 237 1.358152 CCCTTTGTCTCCACCTACCA 58.642 55.000 0.00 0.00 0.00 3.25
237 238 1.003233 CCCTTTGTCTCCACCTACCAC 59.997 57.143 0.00 0.00 0.00 4.16
238 239 1.697432 CCTTTGTCTCCACCTACCACA 59.303 52.381 0.00 0.00 0.00 4.17
239 240 2.305927 CCTTTGTCTCCACCTACCACAT 59.694 50.000 0.00 0.00 0.00 3.21
240 241 3.600388 CTTTGTCTCCACCTACCACATC 58.400 50.000 0.00 0.00 0.00 3.06
241 242 1.568504 TGTCTCCACCTACCACATCC 58.431 55.000 0.00 0.00 0.00 3.51
242 243 1.078823 TGTCTCCACCTACCACATCCT 59.921 52.381 0.00 0.00 0.00 3.24
243 244 2.313643 TGTCTCCACCTACCACATCCTA 59.686 50.000 0.00 0.00 0.00 2.94
244 245 2.959707 GTCTCCACCTACCACATCCTAG 59.040 54.545 0.00 0.00 0.00 3.02
245 246 1.689273 CTCCACCTACCACATCCTAGC 59.311 57.143 0.00 0.00 0.00 3.42
246 247 0.389391 CCACCTACCACATCCTAGCG 59.611 60.000 0.00 0.00 0.00 4.26
247 248 1.112113 CACCTACCACATCCTAGCGT 58.888 55.000 0.00 0.00 0.00 5.07
248 249 1.112113 ACCTACCACATCCTAGCGTG 58.888 55.000 0.00 0.00 0.00 5.34
249 250 1.341679 ACCTACCACATCCTAGCGTGA 60.342 52.381 6.72 0.00 35.02 4.35
250 251 1.067212 CCTACCACATCCTAGCGTGAC 59.933 57.143 6.72 0.00 35.02 3.67
251 252 0.736636 TACCACATCCTAGCGTGACG 59.263 55.000 0.00 0.00 35.02 4.35
270 271 1.136147 CAAGGAGTTGCTGCGATGC 59.864 57.895 0.00 0.00 0.00 3.91
271 272 2.042831 AAGGAGTTGCTGCGATGCC 61.043 57.895 0.00 0.00 0.00 4.40
272 273 3.869272 GGAGTTGCTGCGATGCCG 61.869 66.667 0.00 0.00 39.16 5.69
273 274 3.121030 GAGTTGCTGCGATGCCGT 61.121 61.111 0.00 0.00 38.24 5.68
274 275 3.372676 GAGTTGCTGCGATGCCGTG 62.373 63.158 0.00 0.00 38.24 4.94
275 276 4.465512 GTTGCTGCGATGCCGTGG 62.466 66.667 0.00 0.00 38.24 4.94
296 297 5.807011 GTGGCATTCTATGTGTTCATTTTCC 59.193 40.000 0.00 0.00 35.70 3.13
303 304 6.855836 TCTATGTGTTCATTTTCCATTCTGC 58.144 36.000 0.00 0.00 35.70 4.26
305 306 2.663119 GTGTTCATTTTCCATTCTGCGC 59.337 45.455 0.00 0.00 0.00 6.09
417 418 6.142817 CAGCCACGCTAAATAATTGATTACC 58.857 40.000 0.00 0.00 36.40 2.85
433 434 0.109458 TACCGTTCTACAGTGCGCAG 60.109 55.000 12.22 1.57 0.00 5.18
487 488 2.598907 CGAATACGCAAAACCGGCATAG 60.599 50.000 0.00 0.00 0.00 2.23
523 524 2.025131 TGCTCCAACCCATGAATGATGA 60.025 45.455 0.00 0.00 33.31 2.92
662 669 1.665916 CACCGGTCACAGCTCACAG 60.666 63.158 2.59 0.00 0.00 3.66
696 708 1.295020 CCTTTATCCCACCCTGACCA 58.705 55.000 0.00 0.00 0.00 4.02
700 712 0.045623 TATCCCACCCTGACCATGGT 59.954 55.000 19.89 19.89 34.40 3.55
734 746 1.500396 CGCGGGGTAAAGAAAGTGC 59.500 57.895 0.00 0.00 0.00 4.40
837 855 4.590553 TGCTCTCCCCCACCACCA 62.591 66.667 0.00 0.00 0.00 4.17
839 857 3.330720 CTCTCCCCCACCACCACC 61.331 72.222 0.00 0.00 0.00 4.61
840 858 4.194497 TCTCCCCCACCACCACCA 62.194 66.667 0.00 0.00 0.00 4.17
841 859 2.941025 CTCCCCCACCACCACCAT 60.941 66.667 0.00 0.00 0.00 3.55
849 872 2.081787 ACCACCACCATCCACCACA 61.082 57.895 0.00 0.00 0.00 4.17
850 873 1.603455 CCACCACCATCCACCACAC 60.603 63.158 0.00 0.00 0.00 3.82
851 874 1.150308 CACCACCATCCACCACACA 59.850 57.895 0.00 0.00 0.00 3.72
852 875 1.150536 ACCACCATCCACCACACAC 59.849 57.895 0.00 0.00 0.00 3.82
853 876 1.352622 ACCACCATCCACCACACACT 61.353 55.000 0.00 0.00 0.00 3.55
854 877 0.606401 CCACCATCCACCACACACTC 60.606 60.000 0.00 0.00 0.00 3.51
858 881 0.979665 CATCCACCACACACTCCTCT 59.020 55.000 0.00 0.00 0.00 3.69
859 882 1.066573 CATCCACCACACACTCCTCTC 60.067 57.143 0.00 0.00 0.00 3.20
860 883 0.105709 TCCACCACACACTCCTCTCA 60.106 55.000 0.00 0.00 0.00 3.27
861 884 0.034059 CCACCACACACTCCTCTCAC 59.966 60.000 0.00 0.00 0.00 3.51
862 885 1.043816 CACCACACACTCCTCTCACT 58.956 55.000 0.00 0.00 0.00 3.41
863 886 1.000283 CACCACACACTCCTCTCACTC 60.000 57.143 0.00 0.00 0.00 3.51
864 887 1.133325 ACCACACACTCCTCTCACTCT 60.133 52.381 0.00 0.00 0.00 3.24
865 888 1.543802 CCACACACTCCTCTCACTCTC 59.456 57.143 0.00 0.00 0.00 3.20
866 889 1.198867 CACACACTCCTCTCACTCTCG 59.801 57.143 0.00 0.00 0.00 4.04
931 961 1.355720 CTCCCCAGTGGACTCCATTTT 59.644 52.381 11.95 0.00 38.61 1.82
1023 1065 2.767496 CTGCCCCCTCTCCTCCTG 60.767 72.222 0.00 0.00 0.00 3.86
1344 1389 2.518825 CTCGTCCTCTACCCGGGG 60.519 72.222 27.92 12.73 0.00 5.73
1599 1644 2.674754 GGCCAGATTCCCGACCAA 59.325 61.111 0.00 0.00 0.00 3.67
1727 1772 4.816984 GGAGGGGAGCCTCGACGA 62.817 72.222 0.00 0.00 37.68 4.20
2016 2061 2.185004 ACAACAACAAGATCTCCGGG 57.815 50.000 0.00 0.00 0.00 5.73
2406 2472 3.184178 GCCGTGGTTTTTCATGTGATTTG 59.816 43.478 0.00 0.00 0.00 2.32
2420 2486 9.434420 TTCATGTGATTTGGGTTTGAATTTATC 57.566 29.630 0.00 0.00 0.00 1.75
2470 2540 0.033894 ACGAGGTTGGGTTGGTGTTT 60.034 50.000 0.00 0.00 0.00 2.83
2475 2545 0.804156 GTTGGGTTGGTGTTTGTGCG 60.804 55.000 0.00 0.00 0.00 5.34
2476 2546 1.251527 TTGGGTTGGTGTTTGTGCGT 61.252 50.000 0.00 0.00 0.00 5.24
2657 2740 0.761187 TAGATAGCTGGCTGCCTTGG 59.239 55.000 21.03 10.97 44.23 3.61
2658 2741 2.123982 ATAGCTGGCTGCCTTGGC 60.124 61.111 21.03 19.62 44.23 4.52
2659 2742 2.621517 GATAGCTGGCTGCCTTGGCT 62.622 60.000 26.86 26.86 44.23 4.75
2660 2743 2.905935 ATAGCTGGCTGCCTTGGCTG 62.906 60.000 29.51 13.18 44.23 4.85
2662 2745 3.060615 CTGGCTGCCTTGGCTGAC 61.061 66.667 21.03 18.21 34.32 3.51
2663 2746 3.564345 CTGGCTGCCTTGGCTGACT 62.564 63.158 21.03 0.00 34.32 3.41
2664 2747 3.060615 GGCTGCCTTGGCTGACTG 61.061 66.667 20.21 4.34 0.00 3.51
2665 2748 3.745803 GCTGCCTTGGCTGACTGC 61.746 66.667 20.21 9.64 41.94 4.40
2666 2749 2.281970 CTGCCTTGGCTGACTGCA 60.282 61.111 13.18 0.00 45.15 4.41
2686 2769 4.506654 TGCACTAGTTTTTCTCAGACGTTC 59.493 41.667 0.00 0.00 0.00 3.95
2701 2784 2.964768 GACGTTCAAGTCGAAATGTTGC 59.035 45.455 0.00 0.00 34.69 4.17
2726 2809 7.038154 TGTGTTTTCTTTCAATAGGTTCTGG 57.962 36.000 0.00 0.00 0.00 3.86
2732 2815 4.476846 TCTTTCAATAGGTTCTGGGCCATA 59.523 41.667 6.72 0.00 0.00 2.74
2782 2865 4.972514 ACTGGCTATAGCTTTCTTTTGC 57.027 40.909 23.53 4.92 41.70 3.68
2827 2910 2.837591 TGTTTATGCAGAGGCTACAGGA 59.162 45.455 0.00 0.00 41.91 3.86
2831 2914 2.949177 TGCAGAGGCTACAGGAAAAA 57.051 45.000 0.00 0.00 41.91 1.94
2870 2953 3.341823 CTCAAAATGACCCCTCTGACAG 58.658 50.000 0.00 0.00 0.00 3.51
2904 2987 1.059098 AGATGACTGTGTGGCCTTCA 58.941 50.000 3.32 0.00 0.00 3.02
2905 2988 1.002888 AGATGACTGTGTGGCCTTCAG 59.997 52.381 3.32 12.21 35.60 3.02
2918 3026 1.690283 CCTTCAGCGACGCACTGATG 61.690 60.000 23.70 18.00 43.40 3.07
2933 3041 2.295070 ACTGATGTTTTACCGTTTGGCC 59.705 45.455 0.00 0.00 39.70 5.36
2935 3043 3.752665 TGATGTTTTACCGTTTGGCCTA 58.247 40.909 3.32 0.00 39.70 3.93
2947 3055 4.796312 CCGTTTGGCCTATTGAATTTTACG 59.204 41.667 3.32 0.00 0.00 3.18
2951 3059 4.601084 TGGCCTATTGAATTTTACGGGAA 58.399 39.130 3.32 0.00 0.00 3.97
2970 3078 3.268330 GAACCCGGGATAGAAACTGTTC 58.732 50.000 32.02 12.69 0.00 3.18
3031 3139 9.448587 AATCCTAGTACCAAGATTAGGTGTATT 57.551 33.333 0.00 0.00 40.26 1.89
3105 3219 5.692115 TCTTCTATGGGACTGCATACAAA 57.308 39.130 0.00 0.00 0.00 2.83
3150 3264 8.744568 ACATTGTAATCCAACAAACCAAATTT 57.255 26.923 0.00 0.00 42.33 1.82
3165 3279 5.963176 CCAAATTTGATTTTTGGGAAGGG 57.037 39.130 19.86 0.00 46.12 3.95
3166 3280 5.629125 CCAAATTTGATTTTTGGGAAGGGA 58.371 37.500 19.86 0.00 46.12 4.20
3167 3281 6.067350 CCAAATTTGATTTTTGGGAAGGGAA 58.933 36.000 19.86 0.00 46.12 3.97
3168 3282 6.548993 CCAAATTTGATTTTTGGGAAGGGAAA 59.451 34.615 19.86 0.00 46.12 3.13
3169 3283 7.069208 CCAAATTTGATTTTTGGGAAGGGAAAA 59.931 33.333 19.86 0.00 46.12 2.29
3170 3284 7.822161 AATTTGATTTTTGGGAAGGGAAAAG 57.178 32.000 0.00 0.00 0.00 2.27
3171 3285 6.567602 TTTGATTTTTGGGAAGGGAAAAGA 57.432 33.333 0.00 0.00 0.00 2.52
3172 3286 6.567602 TTGATTTTTGGGAAGGGAAAAGAA 57.432 33.333 0.00 0.00 0.00 2.52
3173 3287 6.567602 TGATTTTTGGGAAGGGAAAAGAAA 57.432 33.333 0.00 0.00 0.00 2.52
3174 3288 6.353323 TGATTTTTGGGAAGGGAAAAGAAAC 58.647 36.000 0.00 0.00 0.00 2.78
3175 3289 6.157820 TGATTTTTGGGAAGGGAAAAGAAACT 59.842 34.615 0.00 0.00 0.00 2.66
3176 3290 5.351948 TTTTGGGAAGGGAAAAGAAACTG 57.648 39.130 0.00 0.00 0.00 3.16
3177 3291 3.680777 TGGGAAGGGAAAAGAAACTGT 57.319 42.857 0.00 0.00 0.00 3.55
3178 3292 3.989056 TGGGAAGGGAAAAGAAACTGTT 58.011 40.909 0.00 0.00 0.00 3.16
3179 3293 5.132043 TGGGAAGGGAAAAGAAACTGTTA 57.868 39.130 0.00 0.00 0.00 2.41
3180 3294 5.711698 TGGGAAGGGAAAAGAAACTGTTAT 58.288 37.500 0.00 0.00 0.00 1.89
3181 3295 6.854578 TGGGAAGGGAAAAGAAACTGTTATA 58.145 36.000 0.00 0.00 0.00 0.98
3182 3296 6.946009 TGGGAAGGGAAAAGAAACTGTTATAG 59.054 38.462 0.00 0.00 0.00 1.31
3183 3297 6.377429 GGGAAGGGAAAAGAAACTGTTATAGG 59.623 42.308 0.00 0.00 0.00 2.57
3184 3298 7.173032 GGAAGGGAAAAGAAACTGTTATAGGA 58.827 38.462 0.00 0.00 0.00 2.94
3185 3299 7.834681 GGAAGGGAAAAGAAACTGTTATAGGAT 59.165 37.037 0.00 0.00 0.00 3.24
3186 3300 8.809468 AAGGGAAAAGAAACTGTTATAGGATC 57.191 34.615 0.00 0.00 0.00 3.36
3187 3301 7.347252 AGGGAAAAGAAACTGTTATAGGATCC 58.653 38.462 2.48 2.48 0.00 3.36
3188 3302 6.260271 GGGAAAAGAAACTGTTATAGGATCCG 59.740 42.308 5.98 0.00 0.00 4.18
3189 3303 6.238402 GGAAAAGAAACTGTTATAGGATCCGC 60.238 42.308 5.98 0.00 0.00 5.54
3190 3304 4.338379 AGAAACTGTTATAGGATCCGCC 57.662 45.455 5.98 0.00 0.00 6.13
3191 3305 3.709653 AGAAACTGTTATAGGATCCGCCA 59.290 43.478 5.98 0.00 40.02 5.69
3192 3306 4.348168 AGAAACTGTTATAGGATCCGCCAT 59.652 41.667 5.98 3.98 40.02 4.40
3193 3307 3.685139 ACTGTTATAGGATCCGCCATG 57.315 47.619 5.98 0.00 40.02 3.66
3194 3308 2.972713 ACTGTTATAGGATCCGCCATGT 59.027 45.455 5.98 0.00 40.02 3.21
3195 3309 3.391296 ACTGTTATAGGATCCGCCATGTT 59.609 43.478 5.98 0.00 40.02 2.71
3196 3310 4.141482 ACTGTTATAGGATCCGCCATGTTT 60.141 41.667 5.98 0.00 40.02 2.83
3197 3311 4.385825 TGTTATAGGATCCGCCATGTTTC 58.614 43.478 5.98 0.00 40.02 2.78
3198 3312 4.102524 TGTTATAGGATCCGCCATGTTTCT 59.897 41.667 5.98 0.00 40.02 2.52
3199 3313 2.620251 TAGGATCCGCCATGTTTCTG 57.380 50.000 5.98 0.00 40.02 3.02
3200 3314 0.911769 AGGATCCGCCATGTTTCTGA 59.088 50.000 5.98 0.00 40.02 3.27
3201 3315 1.134280 AGGATCCGCCATGTTTCTGAG 60.134 52.381 5.98 0.00 40.02 3.35
3202 3316 1.134401 GGATCCGCCATGTTTCTGAGA 60.134 52.381 0.00 0.00 36.34 3.27
3203 3317 2.632377 GATCCGCCATGTTTCTGAGAA 58.368 47.619 0.00 0.00 0.00 2.87
3204 3318 2.099141 TCCGCCATGTTTCTGAGAAG 57.901 50.000 0.00 0.00 0.00 2.85
3205 3319 1.347707 TCCGCCATGTTTCTGAGAAGT 59.652 47.619 0.00 0.00 0.00 3.01
3206 3320 2.154462 CCGCCATGTTTCTGAGAAGTT 58.846 47.619 0.00 0.00 0.00 2.66
3207 3321 3.007506 TCCGCCATGTTTCTGAGAAGTTA 59.992 43.478 0.00 0.00 0.00 2.24
3208 3322 3.125316 CCGCCATGTTTCTGAGAAGTTAC 59.875 47.826 0.00 0.00 0.00 2.50
3209 3323 3.997021 CGCCATGTTTCTGAGAAGTTACT 59.003 43.478 0.00 0.00 0.00 2.24
3210 3324 4.092091 CGCCATGTTTCTGAGAAGTTACTC 59.908 45.833 0.00 0.00 37.42 2.59
3211 3325 4.092091 GCCATGTTTCTGAGAAGTTACTCG 59.908 45.833 0.00 0.00 39.49 4.18
3212 3326 5.230942 CCATGTTTCTGAGAAGTTACTCGT 58.769 41.667 0.00 0.00 39.49 4.18
3213 3327 5.696724 CCATGTTTCTGAGAAGTTACTCGTT 59.303 40.000 0.00 0.00 39.49 3.85
3214 3328 6.346919 CCATGTTTCTGAGAAGTTACTCGTTG 60.347 42.308 0.00 0.00 39.49 4.10
3215 3329 5.047847 TGTTTCTGAGAAGTTACTCGTTGG 58.952 41.667 0.00 0.00 39.49 3.77
3216 3330 3.299340 TCTGAGAAGTTACTCGTTGGC 57.701 47.619 0.00 0.00 39.49 4.52
3217 3331 2.626266 TCTGAGAAGTTACTCGTTGGCA 59.374 45.455 0.00 0.00 39.49 4.92
3218 3332 3.258372 TCTGAGAAGTTACTCGTTGGCAT 59.742 43.478 0.00 0.00 39.49 4.40
3219 3333 3.997021 CTGAGAAGTTACTCGTTGGCATT 59.003 43.478 0.00 0.00 39.49 3.56
3220 3334 4.385825 TGAGAAGTTACTCGTTGGCATTT 58.614 39.130 0.00 0.00 39.49 2.32
3221 3335 4.819630 TGAGAAGTTACTCGTTGGCATTTT 59.180 37.500 0.00 0.00 39.49 1.82
3222 3336 5.049680 TGAGAAGTTACTCGTTGGCATTTTC 60.050 40.000 0.00 0.00 39.49 2.29
3223 3337 3.806316 AGTTACTCGTTGGCATTTTCG 57.194 42.857 0.00 0.00 0.00 3.46
3224 3338 3.135994 AGTTACTCGTTGGCATTTTCGT 58.864 40.909 0.00 0.00 0.00 3.85
3225 3339 3.185797 AGTTACTCGTTGGCATTTTCGTC 59.814 43.478 0.00 0.00 0.00 4.20
3226 3340 1.588674 ACTCGTTGGCATTTTCGTCA 58.411 45.000 0.00 0.00 0.00 4.35
3227 3341 2.151202 ACTCGTTGGCATTTTCGTCAT 58.849 42.857 0.00 0.00 0.00 3.06
3228 3342 2.095768 ACTCGTTGGCATTTTCGTCATG 60.096 45.455 0.00 0.00 0.00 3.07
3229 3343 1.876799 TCGTTGGCATTTTCGTCATGT 59.123 42.857 0.00 0.00 0.00 3.21
3230 3344 2.095969 TCGTTGGCATTTTCGTCATGTC 60.096 45.455 0.00 0.00 0.00 3.06
3231 3345 2.350293 CGTTGGCATTTTCGTCATGTCA 60.350 45.455 0.00 0.00 34.40 3.58
3232 3346 3.236816 GTTGGCATTTTCGTCATGTCAG 58.763 45.455 0.00 0.00 37.54 3.51
3233 3347 1.199789 TGGCATTTTCGTCATGTCAGC 59.800 47.619 0.00 0.00 31.19 4.26
3234 3348 1.468054 GGCATTTTCGTCATGTCAGCC 60.468 52.381 0.00 0.00 0.00 4.85
3235 3349 1.470098 GCATTTTCGTCATGTCAGCCT 59.530 47.619 0.00 0.00 0.00 4.58
3236 3350 2.677836 GCATTTTCGTCATGTCAGCCTA 59.322 45.455 0.00 0.00 0.00 3.93
3237 3351 3.485877 GCATTTTCGTCATGTCAGCCTAC 60.486 47.826 0.00 0.00 0.00 3.18
3238 3352 3.394674 TTTTCGTCATGTCAGCCTACA 57.605 42.857 0.00 0.00 0.00 2.74
3239 3353 3.394674 TTTCGTCATGTCAGCCTACAA 57.605 42.857 0.00 0.00 32.02 2.41
3240 3354 3.394674 TTCGTCATGTCAGCCTACAAA 57.605 42.857 0.00 0.00 32.02 2.83
3241 3355 3.610040 TCGTCATGTCAGCCTACAAAT 57.390 42.857 0.00 0.00 32.02 2.32
3242 3356 4.729227 TCGTCATGTCAGCCTACAAATA 57.271 40.909 0.00 0.00 32.02 1.40
3243 3357 5.079689 TCGTCATGTCAGCCTACAAATAA 57.920 39.130 0.00 0.00 32.02 1.40
3244 3358 5.109210 TCGTCATGTCAGCCTACAAATAAG 58.891 41.667 0.00 0.00 32.02 1.73
3245 3359 4.271049 CGTCATGTCAGCCTACAAATAAGG 59.729 45.833 0.00 0.00 37.17 2.69
3246 3360 5.186198 GTCATGTCAGCCTACAAATAAGGT 58.814 41.667 0.00 0.00 36.43 3.50
3247 3361 5.648092 GTCATGTCAGCCTACAAATAAGGTT 59.352 40.000 0.00 0.00 36.43 3.50
3248 3362 6.821665 GTCATGTCAGCCTACAAATAAGGTTA 59.178 38.462 0.00 0.00 36.43 2.85
3249 3363 7.499232 GTCATGTCAGCCTACAAATAAGGTTAT 59.501 37.037 0.00 0.00 36.43 1.89
3250 3364 7.715249 TCATGTCAGCCTACAAATAAGGTTATC 59.285 37.037 0.00 0.00 36.43 1.75
3251 3365 6.953101 TGTCAGCCTACAAATAAGGTTATCA 58.047 36.000 0.00 0.00 36.43 2.15
3252 3366 6.821665 TGTCAGCCTACAAATAAGGTTATCAC 59.178 38.462 0.00 0.00 36.43 3.06
3253 3367 6.260271 GTCAGCCTACAAATAAGGTTATCACC 59.740 42.308 0.00 0.00 44.67 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.831652 CTTGAGAACCAGGACGCCCT 61.832 60.000 0.00 0.00 45.74 5.19
1 2 1.376037 CTTGAGAACCAGGACGCCC 60.376 63.158 0.00 0.00 0.00 6.13
2 3 1.376037 CCTTGAGAACCAGGACGCC 60.376 63.158 0.00 0.00 0.00 5.68
3 4 1.376037 CCCTTGAGAACCAGGACGC 60.376 63.158 0.00 0.00 0.00 5.19
4 5 1.192146 TCCCCTTGAGAACCAGGACG 61.192 60.000 0.00 0.00 0.00 4.79
5 6 0.615850 CTCCCCTTGAGAACCAGGAC 59.384 60.000 0.00 0.00 44.42 3.85
6 7 0.547712 CCTCCCCTTGAGAACCAGGA 60.548 60.000 0.00 0.00 44.42 3.86
7 8 1.566298 CCCTCCCCTTGAGAACCAGG 61.566 65.000 0.00 0.00 44.42 4.45
8 9 1.566298 CCCCTCCCCTTGAGAACCAG 61.566 65.000 0.00 0.00 44.42 4.00
11 12 1.575447 ATGCCCCTCCCCTTGAGAAC 61.575 60.000 0.00 0.00 44.42 3.01
12 13 1.230281 ATGCCCCTCCCCTTGAGAA 60.230 57.895 0.00 0.00 44.42 2.87
13 14 1.694169 GATGCCCCTCCCCTTGAGA 60.694 63.158 0.00 0.00 44.42 3.27
14 15 0.400525 TAGATGCCCCTCCCCTTGAG 60.401 60.000 0.00 0.00 41.07 3.02
15 16 0.045623 TTAGATGCCCCTCCCCTTGA 59.954 55.000 0.00 0.00 0.00 3.02
16 17 1.152649 ATTAGATGCCCCTCCCCTTG 58.847 55.000 0.00 0.00 0.00 3.61
17 18 1.152649 CATTAGATGCCCCTCCCCTT 58.847 55.000 0.00 0.00 0.00 3.95
18 19 0.271927 TCATTAGATGCCCCTCCCCT 59.728 55.000 0.00 0.00 0.00 4.79
19 20 0.402121 GTCATTAGATGCCCCTCCCC 59.598 60.000 0.00 0.00 0.00 4.81
20 21 0.402121 GGTCATTAGATGCCCCTCCC 59.598 60.000 0.00 0.00 0.00 4.30
21 22 1.072965 CAGGTCATTAGATGCCCCTCC 59.927 57.143 0.00 0.00 31.60 4.30
22 23 1.072965 CCAGGTCATTAGATGCCCCTC 59.927 57.143 0.00 0.00 31.60 4.30
23 24 1.143813 CCAGGTCATTAGATGCCCCT 58.856 55.000 0.00 0.00 33.41 4.79
24 25 0.111253 CCCAGGTCATTAGATGCCCC 59.889 60.000 0.00 0.00 0.00 5.80
25 26 0.538287 GCCCAGGTCATTAGATGCCC 60.538 60.000 0.00 0.00 0.00 5.36
26 27 0.475906 AGCCCAGGTCATTAGATGCC 59.524 55.000 0.00 0.00 0.00 4.40
27 28 1.133976 ACAGCCCAGGTCATTAGATGC 60.134 52.381 0.00 0.00 0.00 3.91
28 29 2.569059 CACAGCCCAGGTCATTAGATG 58.431 52.381 0.00 0.00 0.00 2.90
29 30 1.133976 GCACAGCCCAGGTCATTAGAT 60.134 52.381 0.00 0.00 0.00 1.98
30 31 0.253044 GCACAGCCCAGGTCATTAGA 59.747 55.000 0.00 0.00 0.00 2.10
31 32 0.749454 GGCACAGCCCAGGTCATTAG 60.749 60.000 0.00 0.00 44.06 1.73
32 33 1.302949 GGCACAGCCCAGGTCATTA 59.697 57.895 0.00 0.00 44.06 1.90
33 34 2.036256 GGCACAGCCCAGGTCATT 59.964 61.111 0.00 0.00 44.06 2.57
43 44 4.626081 ACACCTCGTGGGCACAGC 62.626 66.667 8.63 0.00 37.94 4.40
44 45 2.666190 CACACCTCGTGGGCACAG 60.666 66.667 8.63 0.00 42.34 3.66
52 53 2.027605 CACTCACGCACACCTCGT 59.972 61.111 0.00 0.00 41.28 4.18
53 54 2.734723 CCACTCACGCACACCTCG 60.735 66.667 0.00 0.00 0.00 4.63
54 55 3.044305 GCCACTCACGCACACCTC 61.044 66.667 0.00 0.00 0.00 3.85
55 56 4.626081 GGCCACTCACGCACACCT 62.626 66.667 0.00 0.00 0.00 4.00
56 57 4.626081 AGGCCACTCACGCACACC 62.626 66.667 5.01 0.00 0.00 4.16
57 58 3.349006 CAGGCCACTCACGCACAC 61.349 66.667 5.01 0.00 0.00 3.82
59 60 4.996434 AGCAGGCCACTCACGCAC 62.996 66.667 5.01 0.00 0.00 5.34
60 61 4.994471 CAGCAGGCCACTCACGCA 62.994 66.667 5.01 0.00 0.00 5.24
84 85 0.327924 TCATTACAGGCCACAGTGGG 59.672 55.000 21.77 7.25 38.19 4.61
85 86 2.425143 ATCATTACAGGCCACAGTGG 57.575 50.000 16.16 16.16 41.55 4.00
86 87 4.965814 AGATATCATTACAGGCCACAGTG 58.034 43.478 5.01 0.00 0.00 3.66
87 88 5.841237 AGTAGATATCATTACAGGCCACAGT 59.159 40.000 5.01 2.63 0.00 3.55
88 89 6.352016 AGTAGATATCATTACAGGCCACAG 57.648 41.667 5.01 0.00 0.00 3.66
89 90 6.747414 AAGTAGATATCATTACAGGCCACA 57.253 37.500 5.01 0.00 0.00 4.17
91 92 9.201989 CCTATAAGTAGATATCATTACAGGCCA 57.798 37.037 5.01 0.00 0.00 5.36
92 93 8.145122 GCCTATAAGTAGATATCATTACAGGCC 58.855 40.741 22.09 0.00 32.94 5.19
93 94 8.919145 AGCCTATAAGTAGATATCATTACAGGC 58.081 37.037 23.70 23.70 36.36 4.85
101 102 9.674068 CTCACACTAGCCTATAAGTAGATATCA 57.326 37.037 5.32 0.00 0.00 2.15
102 103 9.116067 CCTCACACTAGCCTATAAGTAGATATC 57.884 40.741 0.00 0.00 0.00 1.63
103 104 8.837737 TCCTCACACTAGCCTATAAGTAGATAT 58.162 37.037 0.00 0.00 0.00 1.63
104 105 8.215954 TCCTCACACTAGCCTATAAGTAGATA 57.784 38.462 0.00 0.00 0.00 1.98
105 106 7.017750 TCTCCTCACACTAGCCTATAAGTAGAT 59.982 40.741 0.00 0.00 0.00 1.98
106 107 6.329460 TCTCCTCACACTAGCCTATAAGTAGA 59.671 42.308 0.00 0.00 0.00 2.59
107 108 6.535540 TCTCCTCACACTAGCCTATAAGTAG 58.464 44.000 0.00 0.00 0.00 2.57
108 109 6.466038 CCTCTCCTCACACTAGCCTATAAGTA 60.466 46.154 0.00 0.00 0.00 2.24
109 110 5.381757 CTCTCCTCACACTAGCCTATAAGT 58.618 45.833 0.00 0.00 0.00 2.24
110 111 4.764823 CCTCTCCTCACACTAGCCTATAAG 59.235 50.000 0.00 0.00 0.00 1.73
111 112 4.415846 TCCTCTCCTCACACTAGCCTATAA 59.584 45.833 0.00 0.00 0.00 0.98
112 113 3.981375 TCCTCTCCTCACACTAGCCTATA 59.019 47.826 0.00 0.00 0.00 1.31
113 114 2.786445 TCCTCTCCTCACACTAGCCTAT 59.214 50.000 0.00 0.00 0.00 2.57
114 115 2.173782 CTCCTCTCCTCACACTAGCCTA 59.826 54.545 0.00 0.00 0.00 3.93
115 116 1.003646 TCCTCTCCTCACACTAGCCT 58.996 55.000 0.00 0.00 0.00 4.58
116 117 1.398692 CTCCTCTCCTCACACTAGCC 58.601 60.000 0.00 0.00 0.00 3.93
117 118 1.064314 TCCTCCTCTCCTCACACTAGC 60.064 57.143 0.00 0.00 0.00 3.42
118 119 2.025793 TGTCCTCCTCTCCTCACACTAG 60.026 54.545 0.00 0.00 0.00 2.57
119 120 1.993301 TGTCCTCCTCTCCTCACACTA 59.007 52.381 0.00 0.00 0.00 2.74
120 121 0.780637 TGTCCTCCTCTCCTCACACT 59.219 55.000 0.00 0.00 0.00 3.55
121 122 1.754226 GATGTCCTCCTCTCCTCACAC 59.246 57.143 0.00 0.00 0.00 3.82
122 123 1.683319 CGATGTCCTCCTCTCCTCACA 60.683 57.143 0.00 0.00 0.00 3.58
123 124 1.028905 CGATGTCCTCCTCTCCTCAC 58.971 60.000 0.00 0.00 0.00 3.51
124 125 0.919710 TCGATGTCCTCCTCTCCTCA 59.080 55.000 0.00 0.00 0.00 3.86
125 126 1.679153 GTTCGATGTCCTCCTCTCCTC 59.321 57.143 0.00 0.00 0.00 3.71
126 127 1.286553 AGTTCGATGTCCTCCTCTCCT 59.713 52.381 0.00 0.00 0.00 3.69
127 128 1.407258 CAGTTCGATGTCCTCCTCTCC 59.593 57.143 0.00 0.00 0.00 3.71
128 129 2.096248 ACAGTTCGATGTCCTCCTCTC 58.904 52.381 0.00 0.00 0.00 3.20
129 130 2.223803 ACAGTTCGATGTCCTCCTCT 57.776 50.000 0.00 0.00 0.00 3.69
130 131 4.082136 AGTTTACAGTTCGATGTCCTCCTC 60.082 45.833 0.00 0.00 34.56 3.71
131 132 3.833070 AGTTTACAGTTCGATGTCCTCCT 59.167 43.478 0.00 0.00 34.56 3.69
132 133 3.927142 CAGTTTACAGTTCGATGTCCTCC 59.073 47.826 0.00 0.00 34.56 4.30
133 134 4.806330 TCAGTTTACAGTTCGATGTCCTC 58.194 43.478 0.00 0.00 34.56 3.71
134 135 4.866508 TCAGTTTACAGTTCGATGTCCT 57.133 40.909 0.00 0.00 34.56 3.85
135 136 7.306051 CGATATTCAGTTTACAGTTCGATGTCC 60.306 40.741 0.00 0.00 34.56 4.02
136 137 7.220300 ACGATATTCAGTTTACAGTTCGATGTC 59.780 37.037 0.00 0.00 34.56 3.06
137 138 7.033791 ACGATATTCAGTTTACAGTTCGATGT 58.966 34.615 0.00 0.00 37.19 3.06
138 139 7.451281 ACGATATTCAGTTTACAGTTCGATG 57.549 36.000 0.00 0.00 0.00 3.84
139 140 9.745880 ATAACGATATTCAGTTTACAGTTCGAT 57.254 29.630 0.00 0.00 0.00 3.59
140 141 9.577110 AATAACGATATTCAGTTTACAGTTCGA 57.423 29.630 0.00 0.00 0.00 3.71
141 142 9.831054 GAATAACGATATTCAGTTTACAGTTCG 57.169 33.333 17.66 0.00 44.52 3.95
143 144 9.886132 AGGAATAACGATATTCAGTTTACAGTT 57.114 29.630 22.23 0.00 46.15 3.16
149 150 9.503399 GGGATTAGGAATAACGATATTCAGTTT 57.497 33.333 22.23 10.34 46.15 2.66
150 151 8.656806 TGGGATTAGGAATAACGATATTCAGTT 58.343 33.333 22.23 12.24 46.15 3.16
151 152 8.202461 TGGGATTAGGAATAACGATATTCAGT 57.798 34.615 22.23 13.54 46.15 3.41
152 153 9.155975 CTTGGGATTAGGAATAACGATATTCAG 57.844 37.037 22.23 8.00 46.15 3.02
153 154 7.606456 GCTTGGGATTAGGAATAACGATATTCA 59.394 37.037 22.23 6.99 46.15 2.57
154 155 7.065923 GGCTTGGGATTAGGAATAACGATATTC 59.934 40.741 15.07 15.07 44.44 1.75
155 156 6.884836 GGCTTGGGATTAGGAATAACGATATT 59.115 38.462 0.00 0.00 34.40 1.28
156 157 6.215636 AGGCTTGGGATTAGGAATAACGATAT 59.784 38.462 0.00 0.00 0.00 1.63
157 158 5.546499 AGGCTTGGGATTAGGAATAACGATA 59.454 40.000 0.00 0.00 0.00 2.92
158 159 4.351111 AGGCTTGGGATTAGGAATAACGAT 59.649 41.667 0.00 0.00 0.00 3.73
159 160 3.714798 AGGCTTGGGATTAGGAATAACGA 59.285 43.478 0.00 0.00 0.00 3.85
160 161 4.086706 AGGCTTGGGATTAGGAATAACG 57.913 45.455 0.00 0.00 0.00 3.18
161 162 4.827835 GGAAGGCTTGGGATTAGGAATAAC 59.172 45.833 3.46 0.00 0.00 1.89
162 163 4.731929 AGGAAGGCTTGGGATTAGGAATAA 59.268 41.667 3.46 0.00 0.00 1.40
163 164 4.315993 AGGAAGGCTTGGGATTAGGAATA 58.684 43.478 3.46 0.00 0.00 1.75
164 165 3.134471 AGGAAGGCTTGGGATTAGGAAT 58.866 45.455 3.46 0.00 0.00 3.01
165 166 2.509964 GAGGAAGGCTTGGGATTAGGAA 59.490 50.000 3.46 0.00 0.00 3.36
166 167 2.127708 GAGGAAGGCTTGGGATTAGGA 58.872 52.381 3.46 0.00 0.00 2.94
167 168 2.131023 AGAGGAAGGCTTGGGATTAGG 58.869 52.381 3.46 0.00 0.00 2.69
168 169 2.774234 TCAGAGGAAGGCTTGGGATTAG 59.226 50.000 3.46 0.00 0.00 1.73
169 170 2.774234 CTCAGAGGAAGGCTTGGGATTA 59.226 50.000 3.46 0.00 0.00 1.75
170 171 1.563410 CTCAGAGGAAGGCTTGGGATT 59.437 52.381 3.46 0.00 0.00 3.01
171 172 1.211456 CTCAGAGGAAGGCTTGGGAT 58.789 55.000 3.46 0.00 0.00 3.85
172 173 1.557269 GCTCAGAGGAAGGCTTGGGA 61.557 60.000 3.46 0.00 0.00 4.37
173 174 1.077858 GCTCAGAGGAAGGCTTGGG 60.078 63.158 3.46 0.00 0.00 4.12
174 175 0.327591 AAGCTCAGAGGAAGGCTTGG 59.672 55.000 3.46 0.00 42.40 3.61
175 176 2.197283 AAAGCTCAGAGGAAGGCTTG 57.803 50.000 3.46 0.00 43.05 4.01
176 177 2.967745 AAAAGCTCAGAGGAAGGCTT 57.032 45.000 0.00 0.00 45.31 4.35
177 178 2.374839 AGAAAAAGCTCAGAGGAAGGCT 59.625 45.455 0.00 0.00 36.53 4.58
178 179 2.789213 AGAAAAAGCTCAGAGGAAGGC 58.211 47.619 0.00 0.00 0.00 4.35
179 180 3.755905 GGAAGAAAAAGCTCAGAGGAAGG 59.244 47.826 0.00 0.00 0.00 3.46
180 181 4.650734 AGGAAGAAAAAGCTCAGAGGAAG 58.349 43.478 0.00 0.00 0.00 3.46
181 182 4.349342 AGAGGAAGAAAAAGCTCAGAGGAA 59.651 41.667 0.00 0.00 0.00 3.36
182 183 3.906846 AGAGGAAGAAAAAGCTCAGAGGA 59.093 43.478 0.00 0.00 0.00 3.71
183 184 4.252878 GAGAGGAAGAAAAAGCTCAGAGG 58.747 47.826 0.00 0.00 0.00 3.69
184 185 4.252878 GGAGAGGAAGAAAAAGCTCAGAG 58.747 47.826 0.00 0.00 0.00 3.35
185 186 3.648067 TGGAGAGGAAGAAAAAGCTCAGA 59.352 43.478 0.00 0.00 0.00 3.27
186 187 4.013267 TGGAGAGGAAGAAAAAGCTCAG 57.987 45.455 0.00 0.00 0.00 3.35
187 188 4.392940 CTTGGAGAGGAAGAAAAAGCTCA 58.607 43.478 0.00 0.00 0.00 4.26
188 189 3.190327 GCTTGGAGAGGAAGAAAAAGCTC 59.810 47.826 0.00 0.00 36.49 4.09
189 190 3.153130 GCTTGGAGAGGAAGAAAAAGCT 58.847 45.455 0.00 0.00 36.49 3.74
190 191 3.153130 AGCTTGGAGAGGAAGAAAAAGC 58.847 45.455 0.00 0.00 39.01 3.51
191 192 7.362487 GGAAATAGCTTGGAGAGGAAGAAAAAG 60.362 40.741 0.00 0.00 0.00 2.27
192 193 6.434340 GGAAATAGCTTGGAGAGGAAGAAAAA 59.566 38.462 0.00 0.00 0.00 1.94
193 194 5.946377 GGAAATAGCTTGGAGAGGAAGAAAA 59.054 40.000 0.00 0.00 0.00 2.29
194 195 5.501156 GGAAATAGCTTGGAGAGGAAGAAA 58.499 41.667 0.00 0.00 0.00 2.52
195 196 4.080299 GGGAAATAGCTTGGAGAGGAAGAA 60.080 45.833 0.00 0.00 0.00 2.52
196 197 3.456277 GGGAAATAGCTTGGAGAGGAAGA 59.544 47.826 0.00 0.00 0.00 2.87
197 198 3.434310 GGGGAAATAGCTTGGAGAGGAAG 60.434 52.174 0.00 0.00 0.00 3.46
198 199 2.509964 GGGGAAATAGCTTGGAGAGGAA 59.490 50.000 0.00 0.00 0.00 3.36
199 200 2.127708 GGGGAAATAGCTTGGAGAGGA 58.872 52.381 0.00 0.00 0.00 3.71
200 201 2.131023 AGGGGAAATAGCTTGGAGAGG 58.869 52.381 0.00 0.00 0.00 3.69
201 202 3.941704 AAGGGGAAATAGCTTGGAGAG 57.058 47.619 0.00 0.00 0.00 3.20
202 203 3.333680 ACAAAGGGGAAATAGCTTGGAGA 59.666 43.478 0.00 0.00 0.00 3.71
203 204 3.696548 GACAAAGGGGAAATAGCTTGGAG 59.303 47.826 0.00 0.00 0.00 3.86
204 205 3.333680 AGACAAAGGGGAAATAGCTTGGA 59.666 43.478 0.00 0.00 0.00 3.53
205 206 3.696548 GAGACAAAGGGGAAATAGCTTGG 59.303 47.826 0.00 0.00 0.00 3.61
206 207 3.696548 GGAGACAAAGGGGAAATAGCTTG 59.303 47.826 0.00 0.00 0.00 4.01
207 208 3.333680 TGGAGACAAAGGGGAAATAGCTT 59.666 43.478 0.00 0.00 37.44 3.74
208 209 2.919602 TGGAGACAAAGGGGAAATAGCT 59.080 45.455 0.00 0.00 37.44 3.32
209 210 3.017442 GTGGAGACAAAGGGGAAATAGC 58.983 50.000 0.00 0.00 46.06 2.97
210 211 3.267031 AGGTGGAGACAAAGGGGAAATAG 59.733 47.826 0.00 0.00 46.06 1.73
211 212 3.265489 AGGTGGAGACAAAGGGGAAATA 58.735 45.455 0.00 0.00 46.06 1.40
212 213 2.073776 AGGTGGAGACAAAGGGGAAAT 58.926 47.619 0.00 0.00 46.06 2.17
213 214 1.529744 AGGTGGAGACAAAGGGGAAA 58.470 50.000 0.00 0.00 46.06 3.13
214 215 1.982958 GTAGGTGGAGACAAAGGGGAA 59.017 52.381 0.00 0.00 46.06 3.97
215 216 1.652947 GTAGGTGGAGACAAAGGGGA 58.347 55.000 0.00 0.00 46.06 4.81
216 217 0.618981 GGTAGGTGGAGACAAAGGGG 59.381 60.000 0.00 0.00 46.06 4.79
217 218 1.003233 GTGGTAGGTGGAGACAAAGGG 59.997 57.143 0.00 0.00 46.06 3.95
218 219 1.697432 TGTGGTAGGTGGAGACAAAGG 59.303 52.381 0.00 0.00 46.06 3.11
219 220 3.600388 GATGTGGTAGGTGGAGACAAAG 58.400 50.000 0.00 0.00 46.06 2.77
220 221 2.304761 GGATGTGGTAGGTGGAGACAAA 59.695 50.000 0.00 0.00 46.06 2.83
221 222 1.906574 GGATGTGGTAGGTGGAGACAA 59.093 52.381 0.00 0.00 46.06 3.18
222 223 1.078823 AGGATGTGGTAGGTGGAGACA 59.921 52.381 0.00 0.00 38.70 3.41
223 224 1.867363 AGGATGTGGTAGGTGGAGAC 58.133 55.000 0.00 0.00 0.00 3.36
224 225 2.690026 GCTAGGATGTGGTAGGTGGAGA 60.690 54.545 0.00 0.00 0.00 3.71
225 226 1.689273 GCTAGGATGTGGTAGGTGGAG 59.311 57.143 0.00 0.00 0.00 3.86
226 227 1.789523 GCTAGGATGTGGTAGGTGGA 58.210 55.000 0.00 0.00 0.00 4.02
227 228 0.389391 CGCTAGGATGTGGTAGGTGG 59.611 60.000 0.00 0.00 0.00 4.61
228 229 1.112113 ACGCTAGGATGTGGTAGGTG 58.888 55.000 0.00 0.00 0.00 4.00
229 230 1.112113 CACGCTAGGATGTGGTAGGT 58.888 55.000 0.00 0.00 32.47 3.08
230 231 1.067212 GTCACGCTAGGATGTGGTAGG 59.933 57.143 0.00 0.00 36.74 3.18
231 232 1.268589 CGTCACGCTAGGATGTGGTAG 60.269 57.143 0.00 0.00 36.74 3.18
232 233 0.736636 CGTCACGCTAGGATGTGGTA 59.263 55.000 0.00 0.00 36.74 3.25
233 234 1.511305 CGTCACGCTAGGATGTGGT 59.489 57.895 0.00 0.00 36.74 4.16
234 235 4.402192 CGTCACGCTAGGATGTGG 57.598 61.111 0.00 0.00 36.74 4.17
245 246 2.551270 GCAACTCCTTGCGTCACG 59.449 61.111 0.00 0.00 43.42 4.35
252 253 1.136147 GCATCGCAGCAACTCCTTG 59.864 57.895 0.00 0.00 0.00 3.61
253 254 2.042831 GGCATCGCAGCAACTCCTT 61.043 57.895 0.00 0.00 35.83 3.36
254 255 2.437359 GGCATCGCAGCAACTCCT 60.437 61.111 0.00 0.00 35.83 3.69
255 256 3.869272 CGGCATCGCAGCAACTCC 61.869 66.667 0.00 0.00 35.83 3.85
256 257 3.121030 ACGGCATCGCAGCAACTC 61.121 61.111 0.00 0.00 40.63 3.01
257 258 3.425713 CACGGCATCGCAGCAACT 61.426 61.111 0.00 0.00 40.63 3.16
258 259 4.465512 CCACGGCATCGCAGCAAC 62.466 66.667 0.00 0.00 40.63 4.17
269 270 1.064060 GAACACATAGAATGCCACGGC 59.936 52.381 0.00 0.00 42.35 5.68
270 271 2.355197 TGAACACATAGAATGCCACGG 58.645 47.619 0.00 0.00 0.00 4.94
271 272 4.621068 AATGAACACATAGAATGCCACG 57.379 40.909 0.00 0.00 0.00 4.94
272 273 5.807011 GGAAAATGAACACATAGAATGCCAC 59.193 40.000 0.00 0.00 0.00 5.01
273 274 5.479724 TGGAAAATGAACACATAGAATGCCA 59.520 36.000 0.00 0.00 0.00 4.92
274 275 5.964758 TGGAAAATGAACACATAGAATGCC 58.035 37.500 0.00 0.00 0.00 4.40
275 276 7.977853 AGAATGGAAAATGAACACATAGAATGC 59.022 33.333 0.00 0.00 0.00 3.56
276 277 9.297586 CAGAATGGAAAATGAACACATAGAATG 57.702 33.333 0.00 0.00 0.00 2.67
277 278 7.977853 GCAGAATGGAAAATGAACACATAGAAT 59.022 33.333 0.00 0.00 35.86 2.40
278 279 7.315142 GCAGAATGGAAAATGAACACATAGAA 58.685 34.615 0.00 0.00 35.86 2.10
279 280 6.403527 CGCAGAATGGAAAATGAACACATAGA 60.404 38.462 0.00 0.00 35.86 1.98
280 281 5.740569 CGCAGAATGGAAAATGAACACATAG 59.259 40.000 0.00 0.00 35.86 2.23
281 282 5.639757 CGCAGAATGGAAAATGAACACATA 58.360 37.500 0.00 0.00 35.86 2.29
282 283 4.487948 CGCAGAATGGAAAATGAACACAT 58.512 39.130 0.00 0.00 35.86 3.21
283 284 3.856638 GCGCAGAATGGAAAATGAACACA 60.857 43.478 0.30 0.00 35.86 3.72
284 285 2.663119 GCGCAGAATGGAAAATGAACAC 59.337 45.455 0.30 0.00 35.86 3.32
285 286 2.557924 AGCGCAGAATGGAAAATGAACA 59.442 40.909 11.47 0.00 35.86 3.18
286 287 3.174375 GAGCGCAGAATGGAAAATGAAC 58.826 45.455 11.47 0.00 35.86 3.18
296 297 1.880340 GACTCGGGAGCGCAGAATG 60.880 63.158 11.47 0.00 40.87 2.67
336 337 3.716006 CGTGCTTCCACAGTGCCG 61.716 66.667 0.00 0.00 42.17 5.69
392 393 3.691049 TCAATTATTTAGCGTGGCTGC 57.309 42.857 0.00 0.00 40.10 5.25
417 418 2.772189 GCTGCGCACTGTAGAACG 59.228 61.111 5.66 0.00 30.84 3.95
437 438 4.436998 GCTCCTACCGTGCGCTGT 62.437 66.667 9.73 5.96 0.00 4.40
442 443 0.596859 GTATTCCGCTCCTACCGTGC 60.597 60.000 0.00 0.00 0.00 5.34
443 444 1.030457 AGTATTCCGCTCCTACCGTG 58.970 55.000 0.00 0.00 0.00 4.94
444 445 1.772836 AAGTATTCCGCTCCTACCGT 58.227 50.000 0.00 0.00 0.00 4.83
445 446 2.470821 CAAAGTATTCCGCTCCTACCG 58.529 52.381 0.00 0.00 0.00 4.02
446 447 2.210961 GCAAAGTATTCCGCTCCTACC 58.789 52.381 0.00 0.00 0.00 3.18
447 448 1.859080 CGCAAAGTATTCCGCTCCTAC 59.141 52.381 0.00 0.00 0.00 3.18
448 449 1.752498 TCGCAAAGTATTCCGCTCCTA 59.248 47.619 0.00 0.00 0.00 2.94
467 468 2.286772 CCTATGCCGGTTTTGCGTATTC 60.287 50.000 1.90 0.00 30.34 1.75
523 524 1.229336 CTCTGGGTCTGGGTCTGGT 60.229 63.158 0.00 0.00 0.00 4.00
550 551 3.515502 TCTTTGGATGTACTGCTACTGCT 59.484 43.478 0.00 0.00 40.48 4.24
734 746 0.107703 TGAACAGCGGATTAGCCTGG 60.108 55.000 0.00 0.00 38.01 4.45
837 855 0.768221 AGGAGTGTGTGGTGGATGGT 60.768 55.000 0.00 0.00 0.00 3.55
839 857 0.979665 AGAGGAGTGTGTGGTGGATG 59.020 55.000 0.00 0.00 0.00 3.51
840 858 1.270907 GAGAGGAGTGTGTGGTGGAT 58.729 55.000 0.00 0.00 0.00 3.41
841 859 0.105709 TGAGAGGAGTGTGTGGTGGA 60.106 55.000 0.00 0.00 0.00 4.02
849 872 0.037590 AGCGAGAGTGAGAGGAGTGT 59.962 55.000 0.00 0.00 0.00 3.55
850 873 0.732571 GAGCGAGAGTGAGAGGAGTG 59.267 60.000 0.00 0.00 0.00 3.51
851 874 0.618458 AGAGCGAGAGTGAGAGGAGT 59.382 55.000 0.00 0.00 0.00 3.85
852 875 1.299541 GAGAGCGAGAGTGAGAGGAG 58.700 60.000 0.00 0.00 0.00 3.69
853 876 0.461163 CGAGAGCGAGAGTGAGAGGA 60.461 60.000 0.00 0.00 40.82 3.71
854 877 2.013807 CGAGAGCGAGAGTGAGAGG 58.986 63.158 0.00 0.00 40.82 3.69
948 978 1.729276 CGAGCTCTGAGCCTCTGAG 59.271 63.158 25.09 20.70 43.77 3.35
949 979 2.413963 GCGAGCTCTGAGCCTCTGA 61.414 63.158 25.09 1.13 43.77 3.27
950 980 1.947597 AAGCGAGCTCTGAGCCTCTG 61.948 60.000 25.09 13.65 43.77 3.35
951 981 1.682005 AAGCGAGCTCTGAGCCTCT 60.682 57.895 25.09 16.28 43.77 3.69
952 982 1.519013 CAAGCGAGCTCTGAGCCTC 60.519 63.158 25.09 19.14 43.77 4.70
953 983 2.224495 GACAAGCGAGCTCTGAGCCT 62.224 60.000 25.09 13.02 43.77 4.58
954 984 1.809209 GACAAGCGAGCTCTGAGCC 60.809 63.158 25.09 15.54 43.77 4.70
955 985 1.809209 GGACAAGCGAGCTCTGAGC 60.809 63.158 21.72 21.72 42.84 4.26
1023 1065 4.098722 AGGCAGAGCAGCTGGAGC 62.099 66.667 17.12 0.07 45.03 4.70
1843 1888 2.281484 GTTGCGGGACAGGAGCAA 60.281 61.111 0.00 0.00 46.91 3.91
2406 2472 3.242188 CGACGACGGATAAATTCAAACCC 60.242 47.826 0.00 0.00 35.72 4.11
2470 2540 3.858989 CACACACGCACACGCACA 61.859 61.111 0.00 0.00 45.53 4.57
2475 2545 0.315869 GTAACAGCACACACGCACAC 60.316 55.000 0.00 0.00 0.00 3.82
2476 2546 0.461163 AGTAACAGCACACACGCACA 60.461 50.000 0.00 0.00 0.00 4.57
2657 2740 3.809832 TGAGAAAAACTAGTGCAGTCAGC 59.190 43.478 0.00 0.00 45.96 4.26
2658 2741 5.176590 GTCTGAGAAAAACTAGTGCAGTCAG 59.823 44.000 0.00 6.20 36.04 3.51
2659 2742 5.050490 GTCTGAGAAAAACTAGTGCAGTCA 58.950 41.667 0.00 0.00 36.04 3.41
2660 2743 4.149046 CGTCTGAGAAAAACTAGTGCAGTC 59.851 45.833 0.00 0.00 36.04 3.51
2661 2744 4.051922 CGTCTGAGAAAAACTAGTGCAGT 58.948 43.478 0.00 0.00 40.05 4.40
2662 2745 4.051922 ACGTCTGAGAAAAACTAGTGCAG 58.948 43.478 0.00 0.00 0.00 4.41
2663 2746 4.054780 ACGTCTGAGAAAAACTAGTGCA 57.945 40.909 0.00 0.00 0.00 4.57
2664 2747 4.506654 TGAACGTCTGAGAAAAACTAGTGC 59.493 41.667 0.00 0.00 0.00 4.40
2665 2748 6.255887 ACTTGAACGTCTGAGAAAAACTAGTG 59.744 38.462 0.00 0.00 0.00 2.74
2666 2749 6.338937 ACTTGAACGTCTGAGAAAAACTAGT 58.661 36.000 0.00 0.00 0.00 2.57
2686 2769 3.338818 ACACAGCAACATTTCGACTTG 57.661 42.857 0.00 0.00 0.00 3.16
2701 2784 7.141363 CCAGAACCTATTGAAAGAAAACACAG 58.859 38.462 0.00 0.00 0.00 3.66
2726 2809 6.927381 ACAAATAATAGTACGACTGTATGGCC 59.073 38.462 0.00 0.00 32.11 5.36
2732 2815 7.061441 CACGTCAACAAATAATAGTACGACTGT 59.939 37.037 0.00 0.00 33.59 3.55
2762 2845 4.201990 CCAGCAAAAGAAAGCTATAGCCAG 60.202 45.833 21.17 3.93 43.38 4.85
2782 2865 1.172180 ATGGTGCCACGTTTGTCCAG 61.172 55.000 0.00 0.00 0.00 3.86
2870 2953 2.866762 GTCATCTTGAAGGGTCGCATAC 59.133 50.000 0.00 0.00 0.00 2.39
2904 2987 1.459592 GTAAAACATCAGTGCGTCGCT 59.540 47.619 19.50 0.00 0.00 4.93
2905 2988 1.463528 GGTAAAACATCAGTGCGTCGC 60.464 52.381 11.10 11.10 0.00 5.19
2910 2993 3.305110 CCAAACGGTAAAACATCAGTGC 58.695 45.455 0.00 0.00 0.00 4.40
2918 3026 4.769859 TCAATAGGCCAAACGGTAAAAC 57.230 40.909 5.01 0.00 0.00 2.43
2933 3041 5.164606 CGGGTTCCCGTAAAATTCAATAG 57.835 43.478 20.65 0.00 43.86 1.73
2947 3055 1.134189 CAGTTTCTATCCCGGGTTCCC 60.134 57.143 22.86 3.23 0.00 3.97
2951 3059 1.206371 CGAACAGTTTCTATCCCGGGT 59.794 52.381 22.86 10.79 0.00 5.28
2954 3062 2.667473 ACCGAACAGTTTCTATCCCG 57.333 50.000 0.00 0.00 0.00 5.14
2970 3078 6.884096 TTGCATTTTTCTATATTGCAACCG 57.116 33.333 0.00 0.00 45.42 4.44
3001 3109 9.712305 CACCTAATCTTGGTACTAGGATTATTG 57.288 37.037 19.52 16.11 35.80 1.90
3002 3110 9.448587 ACACCTAATCTTGGTACTAGGATTATT 57.551 33.333 19.52 10.32 35.80 1.40
3054 3168 9.512588 AAAAATACATTGAGTCTGATCTCTTGT 57.487 29.630 0.00 14.15 36.40 3.16
3056 3170 9.956640 AGAAAAATACATTGAGTCTGATCTCTT 57.043 29.630 0.00 0.00 35.68 2.85
3105 3219 9.383519 ACAATGTATACGAATCTTTCAATGACT 57.616 29.630 0.00 0.00 0.00 3.41
3126 3240 8.834465 TCAAATTTGGTTTGTTGGATTACAATG 58.166 29.630 17.90 0.00 45.87 2.82
3148 3262 6.567602 TCTTTTCCCTTCCCAAAAATCAAA 57.432 33.333 0.00 0.00 0.00 2.69
3149 3263 6.567602 TTCTTTTCCCTTCCCAAAAATCAA 57.432 33.333 0.00 0.00 0.00 2.57
3150 3264 6.157820 AGTTTCTTTTCCCTTCCCAAAAATCA 59.842 34.615 0.00 0.00 0.00 2.57
3151 3265 6.483307 CAGTTTCTTTTCCCTTCCCAAAAATC 59.517 38.462 0.00 0.00 0.00 2.17
3152 3266 6.069673 ACAGTTTCTTTTCCCTTCCCAAAAAT 60.070 34.615 0.00 0.00 0.00 1.82
3153 3267 5.249622 ACAGTTTCTTTTCCCTTCCCAAAAA 59.750 36.000 0.00 0.00 0.00 1.94
3154 3268 4.780554 ACAGTTTCTTTTCCCTTCCCAAAA 59.219 37.500 0.00 0.00 0.00 2.44
3155 3269 4.358214 ACAGTTTCTTTTCCCTTCCCAAA 58.642 39.130 0.00 0.00 0.00 3.28
3156 3270 3.989056 ACAGTTTCTTTTCCCTTCCCAA 58.011 40.909 0.00 0.00 0.00 4.12
3157 3271 3.680777 ACAGTTTCTTTTCCCTTCCCA 57.319 42.857 0.00 0.00 0.00 4.37
3158 3272 6.377429 CCTATAACAGTTTCTTTTCCCTTCCC 59.623 42.308 0.00 0.00 0.00 3.97
3159 3273 7.173032 TCCTATAACAGTTTCTTTTCCCTTCC 58.827 38.462 0.00 0.00 0.00 3.46
3160 3274 8.809468 ATCCTATAACAGTTTCTTTTCCCTTC 57.191 34.615 0.00 0.00 0.00 3.46
3161 3275 7.834681 GGATCCTATAACAGTTTCTTTTCCCTT 59.165 37.037 3.84 0.00 0.00 3.95
3162 3276 7.347252 GGATCCTATAACAGTTTCTTTTCCCT 58.653 38.462 3.84 0.00 0.00 4.20
3163 3277 6.260271 CGGATCCTATAACAGTTTCTTTTCCC 59.740 42.308 10.75 0.00 0.00 3.97
3164 3278 6.238402 GCGGATCCTATAACAGTTTCTTTTCC 60.238 42.308 10.75 0.00 0.00 3.13
3165 3279 6.238402 GGCGGATCCTATAACAGTTTCTTTTC 60.238 42.308 10.75 0.00 0.00 2.29
3166 3280 5.589050 GGCGGATCCTATAACAGTTTCTTTT 59.411 40.000 10.75 0.00 0.00 2.27
3167 3281 5.123936 GGCGGATCCTATAACAGTTTCTTT 58.876 41.667 10.75 0.00 0.00 2.52
3168 3282 4.163458 TGGCGGATCCTATAACAGTTTCTT 59.837 41.667 10.75 0.00 35.26 2.52
3169 3283 3.709653 TGGCGGATCCTATAACAGTTTCT 59.290 43.478 10.75 0.00 35.26 2.52
3170 3284 4.067972 TGGCGGATCCTATAACAGTTTC 57.932 45.455 10.75 0.00 35.26 2.78
3171 3285 4.141482 ACATGGCGGATCCTATAACAGTTT 60.141 41.667 10.75 0.00 35.26 2.66
3172 3286 3.391296 ACATGGCGGATCCTATAACAGTT 59.609 43.478 10.75 0.00 35.26 3.16
3173 3287 2.972713 ACATGGCGGATCCTATAACAGT 59.027 45.455 10.75 0.00 35.26 3.55
3174 3288 3.685139 ACATGGCGGATCCTATAACAG 57.315 47.619 10.75 0.00 35.26 3.16
3175 3289 4.102524 AGAAACATGGCGGATCCTATAACA 59.897 41.667 10.75 1.78 35.26 2.41
3176 3290 4.452455 CAGAAACATGGCGGATCCTATAAC 59.548 45.833 10.75 0.00 35.26 1.89
3177 3291 4.346709 TCAGAAACATGGCGGATCCTATAA 59.653 41.667 10.75 0.00 35.26 0.98
3178 3292 3.901222 TCAGAAACATGGCGGATCCTATA 59.099 43.478 10.75 0.00 35.26 1.31
3179 3293 2.705658 TCAGAAACATGGCGGATCCTAT 59.294 45.455 10.75 0.00 35.26 2.57
3180 3294 2.103094 CTCAGAAACATGGCGGATCCTA 59.897 50.000 10.75 0.00 35.26 2.94
3181 3295 0.911769 TCAGAAACATGGCGGATCCT 59.088 50.000 10.75 0.00 35.26 3.24
3182 3296 1.134401 TCTCAGAAACATGGCGGATCC 60.134 52.381 0.00 0.00 0.00 3.36
3183 3297 2.315925 TCTCAGAAACATGGCGGATC 57.684 50.000 0.00 0.00 0.00 3.36
3184 3298 2.026822 ACTTCTCAGAAACATGGCGGAT 60.027 45.455 0.00 0.00 0.00 4.18
3185 3299 1.347707 ACTTCTCAGAAACATGGCGGA 59.652 47.619 0.00 0.00 0.00 5.54
3186 3300 1.813513 ACTTCTCAGAAACATGGCGG 58.186 50.000 0.00 0.00 0.00 6.13
3187 3301 3.997021 AGTAACTTCTCAGAAACATGGCG 59.003 43.478 0.00 0.00 0.00 5.69
3188 3302 4.092091 CGAGTAACTTCTCAGAAACATGGC 59.908 45.833 0.00 0.00 34.46 4.40
3189 3303 5.230942 ACGAGTAACTTCTCAGAAACATGG 58.769 41.667 0.00 0.00 34.46 3.66
3190 3304 6.346919 CCAACGAGTAACTTCTCAGAAACATG 60.347 42.308 0.00 0.00 34.46 3.21
3191 3305 5.696724 CCAACGAGTAACTTCTCAGAAACAT 59.303 40.000 0.00 0.00 34.46 2.71
3192 3306 5.047847 CCAACGAGTAACTTCTCAGAAACA 58.952 41.667 0.00 0.00 34.46 2.83
3193 3307 4.084485 GCCAACGAGTAACTTCTCAGAAAC 60.084 45.833 0.00 0.00 34.46 2.78
3194 3308 4.056050 GCCAACGAGTAACTTCTCAGAAA 58.944 43.478 0.00 0.00 34.46 2.52
3195 3309 3.069016 TGCCAACGAGTAACTTCTCAGAA 59.931 43.478 0.00 0.00 34.46 3.02
3196 3310 2.626266 TGCCAACGAGTAACTTCTCAGA 59.374 45.455 0.00 0.00 34.46 3.27
3197 3311 3.026630 TGCCAACGAGTAACTTCTCAG 57.973 47.619 0.00 0.00 34.46 3.35
3198 3312 3.678056 ATGCCAACGAGTAACTTCTCA 57.322 42.857 0.00 0.00 34.46 3.27
3199 3313 5.358298 AAAATGCCAACGAGTAACTTCTC 57.642 39.130 0.00 0.00 0.00 2.87
3200 3314 4.084013 CGAAAATGCCAACGAGTAACTTCT 60.084 41.667 0.00 0.00 0.00 2.85
3201 3315 4.148891 CGAAAATGCCAACGAGTAACTTC 58.851 43.478 0.00 0.00 0.00 3.01
3202 3316 3.562557 ACGAAAATGCCAACGAGTAACTT 59.437 39.130 0.00 0.00 0.00 2.66
3203 3317 3.135994 ACGAAAATGCCAACGAGTAACT 58.864 40.909 0.00 0.00 0.00 2.24
3204 3318 3.059461 TGACGAAAATGCCAACGAGTAAC 60.059 43.478 0.00 0.00 0.00 2.50
3205 3319 3.132160 TGACGAAAATGCCAACGAGTAA 58.868 40.909 0.00 0.00 0.00 2.24
3206 3320 2.756829 TGACGAAAATGCCAACGAGTA 58.243 42.857 0.00 0.00 0.00 2.59
3207 3321 1.588674 TGACGAAAATGCCAACGAGT 58.411 45.000 0.00 0.00 0.00 4.18
3208 3322 2.095768 ACATGACGAAAATGCCAACGAG 60.096 45.455 0.00 0.00 0.00 4.18
3209 3323 1.876799 ACATGACGAAAATGCCAACGA 59.123 42.857 0.00 0.00 0.00 3.85
3210 3324 2.241722 GACATGACGAAAATGCCAACG 58.758 47.619 0.00 0.00 0.00 4.10
3211 3325 3.236816 CTGACATGACGAAAATGCCAAC 58.763 45.455 0.00 0.00 0.00 3.77
3212 3326 2.351641 GCTGACATGACGAAAATGCCAA 60.352 45.455 0.00 0.00 0.00 4.52
3213 3327 1.199789 GCTGACATGACGAAAATGCCA 59.800 47.619 0.00 0.00 0.00 4.92
3214 3328 1.468054 GGCTGACATGACGAAAATGCC 60.468 52.381 0.00 0.00 0.00 4.40
3215 3329 1.470098 AGGCTGACATGACGAAAATGC 59.530 47.619 0.00 0.00 0.00 3.56
3216 3330 3.684305 TGTAGGCTGACATGACGAAAATG 59.316 43.478 0.00 0.00 0.00 2.32
3217 3331 3.937814 TGTAGGCTGACATGACGAAAAT 58.062 40.909 0.00 0.00 0.00 1.82
3218 3332 3.394674 TGTAGGCTGACATGACGAAAA 57.605 42.857 0.00 0.00 0.00 2.29
3219 3333 3.394674 TTGTAGGCTGACATGACGAAA 57.605 42.857 0.00 0.00 0.00 3.46
3220 3334 3.394674 TTTGTAGGCTGACATGACGAA 57.605 42.857 0.00 0.00 0.00 3.85
3221 3335 3.610040 ATTTGTAGGCTGACATGACGA 57.390 42.857 0.00 0.00 0.00 4.20
3222 3336 4.271049 CCTTATTTGTAGGCTGACATGACG 59.729 45.833 0.00 0.00 0.00 4.35
3223 3337 5.186198 ACCTTATTTGTAGGCTGACATGAC 58.814 41.667 0.00 0.00 36.17 3.06
3224 3338 5.435686 ACCTTATTTGTAGGCTGACATGA 57.564 39.130 0.00 0.00 36.17 3.07
3225 3339 7.498900 TGATAACCTTATTTGTAGGCTGACATG 59.501 37.037 0.00 0.00 36.17 3.21
3226 3340 7.499232 GTGATAACCTTATTTGTAGGCTGACAT 59.501 37.037 0.00 0.00 36.17 3.06
3227 3341 6.821665 GTGATAACCTTATTTGTAGGCTGACA 59.178 38.462 0.00 0.00 36.17 3.58
3228 3342 6.260271 GGTGATAACCTTATTTGTAGGCTGAC 59.740 42.308 0.00 0.00 36.17 3.51
3229 3343 6.069905 TGGTGATAACCTTATTTGTAGGCTGA 60.070 38.462 0.00 0.00 36.17 4.26
3230 3344 6.119536 TGGTGATAACCTTATTTGTAGGCTG 58.880 40.000 0.00 0.00 36.17 4.85
3231 3345 6.321821 TGGTGATAACCTTATTTGTAGGCT 57.678 37.500 0.00 0.00 36.17 4.58
3232 3346 7.582667 ATTGGTGATAACCTTATTTGTAGGC 57.417 36.000 0.00 0.00 36.17 3.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.