Multiple sequence alignment - TraesCS7B01G246600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G246600 chr7B 100.000 3404 0 0 1 3404 456616028 456619431 0.000000e+00 6287.0
1 TraesCS7B01G246600 chr7B 84.771 1438 204 9 979 2404 456915392 456916826 0.000000e+00 1428.0
2 TraesCS7B01G246600 chr7B 91.409 291 16 7 1 291 605369725 605370006 1.150000e-104 390.0
3 TraesCS7B01G246600 chr7B 85.197 304 26 10 1 291 512700195 512700492 9.240000e-76 294.0
4 TraesCS7B01G246600 chr7B 94.737 38 2 0 2069 2106 84702104 84702141 3.670000e-05 60.2
5 TraesCS7B01G246600 chr7D 95.757 1697 67 1 915 2606 437492566 437490870 0.000000e+00 2730.0
6 TraesCS7B01G246600 chr7D 85.395 1431 196 10 985 2404 437487959 437486531 0.000000e+00 1472.0
7 TraesCS7B01G246600 chr7D 84.320 676 99 6 2731 3404 63565769 63566439 0.000000e+00 654.0
8 TraesCS7B01G246600 chr7D 89.607 433 40 4 476 907 630696656 630697084 2.310000e-151 545.0
9 TraesCS7B01G246600 chr7D 94.898 294 8 6 1 291 2510589 2510878 1.440000e-123 453.0
10 TraesCS7B01G246600 chr7D 93.537 294 10 7 1 291 45055003 45055290 2.430000e-116 429.0
11 TraesCS7B01G246600 chr7D 93.889 180 9 2 301 479 45055558 45055736 1.560000e-68 270.0
12 TraesCS7B01G246600 chr7D 92.350 183 10 3 301 481 2511148 2511328 1.210000e-64 257.0
13 TraesCS7B01G246600 chr7A 93.894 1523 78 4 903 2410 487750378 487748856 0.000000e+00 2283.0
14 TraesCS7B01G246600 chr7A 85.784 1428 190 7 985 2404 487716515 487715093 0.000000e+00 1500.0
15 TraesCS7B01G246600 chr7A 89.195 435 36 8 474 902 693150817 693151246 1.800000e-147 532.0
16 TraesCS7B01G246600 chr7A 86.054 294 25 5 2433 2711 487748879 487748587 5.520000e-78 302.0
17 TraesCS7B01G246600 chr3B 98.455 906 7 6 1 901 89358729 89359632 0.000000e+00 1589.0
18 TraesCS7B01G246600 chr3B 82.127 677 110 9 2729 3404 16896246 16895580 1.370000e-158 569.0
19 TraesCS7B01G246600 chr6B 97.674 430 9 1 474 903 203300232 203300660 0.000000e+00 737.0
20 TraesCS7B01G246600 chr6B 90.884 362 30 2 480 840 563318952 563318593 1.840000e-132 483.0
21 TraesCS7B01G246600 chr6B 96.679 271 5 3 1 271 31777598 31777332 6.700000e-122 448.0
22 TraesCS7B01G246600 chr6B 97.253 182 4 1 301 481 31777090 31776909 1.190000e-79 307.0
23 TraesCS7B01G246600 chr5B 96.956 427 9 2 474 900 232632467 232632889 0.000000e+00 713.0
24 TraesCS7B01G246600 chr5B 89.691 291 22 5 1 291 122420066 122420348 6.940000e-97 364.0
25 TraesCS7B01G246600 chr4D 84.536 679 88 11 2731 3404 75800462 75799796 0.000000e+00 656.0
26 TraesCS7B01G246600 chr4D 89.071 183 18 2 300 482 85862575 85862755 3.420000e-55 226.0
27 TraesCS7B01G246600 chr5D 82.232 681 114 7 2729 3404 528580301 528580979 6.330000e-162 580.0
28 TraesCS7B01G246600 chr5D 81.858 678 113 9 2729 3404 78793554 78792885 2.290000e-156 562.0
29 TraesCS7B01G246600 chr5D 81.765 680 108 8 2729 3404 8939684 8939017 3.840000e-154 555.0
30 TraesCS7B01G246600 chr5D 86.780 295 35 4 621 913 342509379 342509087 3.280000e-85 326.0
31 TraesCS7B01G246600 chr4A 84.948 578 81 5 2829 3404 703212057 703211484 6.330000e-162 580.0
32 TraesCS7B01G246600 chr4A 81.388 317 53 5 2730 3045 725921803 725921492 1.570000e-63 254.0
33 TraesCS7B01G246600 chr6D 90.000 430 37 5 474 902 392796883 392796459 4.960000e-153 551.0
34 TraesCS7B01G246600 chr6D 95.189 291 8 5 1 291 38534200 38533916 4.000000e-124 455.0
35 TraesCS7B01G246600 chr6D 92.896 183 10 2 301 481 38533648 38533467 2.600000e-66 263.0
36 TraesCS7B01G246600 chr1A 92.288 389 26 3 474 862 441758982 441759366 1.790000e-152 549.0
37 TraesCS7B01G246600 chr1A 75.234 214 48 4 1619 1828 533324030 533324242 2.800000e-16 97.1
38 TraesCS7B01G246600 chr2B 82.288 638 106 6 2769 3404 741160560 741159928 2.310000e-151 545.0
39 TraesCS7B01G246600 chr2A 81.204 681 125 3 2725 3404 464955492 464956170 2.310000e-151 545.0
40 TraesCS7B01G246600 chr3A 89.401 434 37 6 480 911 713996946 713996520 3.870000e-149 538.0
41 TraesCS7B01G246600 chr4B 84.266 286 35 7 10 291 610833979 610834258 1.560000e-68 270.0
42 TraesCS7B01G246600 chr4B 84.865 185 23 5 300 481 363639902 363639720 7.500000e-42 182.0
43 TraesCS7B01G246600 chrUn 91.848 184 12 2 300 481 100598590 100598772 1.570000e-63 254.0
44 TraesCS7B01G246600 chr6A 87.845 181 19 3 300 480 582772484 582772307 3.440000e-50 209.0
45 TraesCS7B01G246600 chr1D 71.429 560 134 22 1619 2165 436113437 436113983 1.280000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G246600 chr7B 456616028 456619431 3403 False 6287.0 6287 100.0000 1 3404 1 chr7B.!!$F2 3403
1 TraesCS7B01G246600 chr7B 456915392 456916826 1434 False 1428.0 1428 84.7710 979 2404 1 chr7B.!!$F3 1425
2 TraesCS7B01G246600 chr7D 437486531 437492566 6035 True 2101.0 2730 90.5760 915 2606 2 chr7D.!!$R1 1691
3 TraesCS7B01G246600 chr7D 63565769 63566439 670 False 654.0 654 84.3200 2731 3404 1 chr7D.!!$F1 673
4 TraesCS7B01G246600 chr7D 2510589 2511328 739 False 355.0 453 93.6240 1 481 2 chr7D.!!$F3 480
5 TraesCS7B01G246600 chr7D 45055003 45055736 733 False 349.5 429 93.7130 1 479 2 chr7D.!!$F4 478
6 TraesCS7B01G246600 chr7A 487715093 487716515 1422 True 1500.0 1500 85.7840 985 2404 1 chr7A.!!$R1 1419
7 TraesCS7B01G246600 chr7A 487748587 487750378 1791 True 1292.5 2283 89.9740 903 2711 2 chr7A.!!$R2 1808
8 TraesCS7B01G246600 chr3B 89358729 89359632 903 False 1589.0 1589 98.4550 1 901 1 chr3B.!!$F1 900
9 TraesCS7B01G246600 chr3B 16895580 16896246 666 True 569.0 569 82.1270 2729 3404 1 chr3B.!!$R1 675
10 TraesCS7B01G246600 chr6B 31776909 31777598 689 True 377.5 448 96.9660 1 481 2 chr6B.!!$R2 480
11 TraesCS7B01G246600 chr4D 75799796 75800462 666 True 656.0 656 84.5360 2731 3404 1 chr4D.!!$R1 673
12 TraesCS7B01G246600 chr5D 528580301 528580979 678 False 580.0 580 82.2320 2729 3404 1 chr5D.!!$F1 675
13 TraesCS7B01G246600 chr5D 78792885 78793554 669 True 562.0 562 81.8580 2729 3404 1 chr5D.!!$R2 675
14 TraesCS7B01G246600 chr5D 8939017 8939684 667 True 555.0 555 81.7650 2729 3404 1 chr5D.!!$R1 675
15 TraesCS7B01G246600 chr4A 703211484 703212057 573 True 580.0 580 84.9480 2829 3404 1 chr4A.!!$R1 575
16 TraesCS7B01G246600 chr6D 38533467 38534200 733 True 359.0 455 94.0425 1 481 2 chr6D.!!$R2 480
17 TraesCS7B01G246600 chr2B 741159928 741160560 632 True 545.0 545 82.2880 2769 3404 1 chr2B.!!$R1 635
18 TraesCS7B01G246600 chr2A 464955492 464956170 678 False 545.0 545 81.2040 2725 3404 1 chr2A.!!$F1 679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
961 1269 0.037882 CCTCGAGTGTGCACATCACT 60.038 55.0 24.69 15.75 46.86 3.41 F
2225 2542 0.397535 AGAGGGTATAAACGCGGGGA 60.398 55.0 12.47 0.00 43.08 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2294 2611 0.173708 GATCCGTTCCTCGAGTGCTT 59.826 55.000 12.31 0.0 42.86 3.91 R
3049 6745 1.074084 CTGCCCTAGATCGGTAGGAGA 59.926 57.143 9.17 0.0 42.18 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
153 159 1.812686 AAGTCAAGACGCCGGTAGCA 61.813 55.000 1.90 0.00 44.04 3.49
201 209 7.681939 AAATCCGAAGACATTAGTAGCAAAA 57.318 32.000 0.00 0.00 0.00 2.44
823 1116 5.488341 AGGATAAGATACACGTGTTGCTTT 58.512 37.500 28.71 19.94 0.00 3.51
901 1194 1.543871 GCCGTTCCTAAACACTTCCCA 60.544 52.381 0.00 0.00 34.93 4.37
941 1234 1.026718 CATGGCCCACTCGTTTCTCC 61.027 60.000 0.00 0.00 0.00 3.71
955 1248 1.816863 TTCTCCCCTCGAGTGTGCAC 61.817 60.000 10.75 10.75 39.84 4.57
961 1269 0.037882 CCTCGAGTGTGCACATCACT 60.038 55.000 24.69 15.75 46.86 3.41
992 1300 4.479619 CACCAAGCAAAGCTGAATAAGAC 58.520 43.478 0.00 0.00 39.62 3.01
1029 1337 1.664306 GAGAAGGGTGGTCGTCGTT 59.336 57.895 0.00 0.00 0.00 3.85
1311 1619 4.333417 CGGGACTTCCTCCGTAGT 57.667 61.111 0.00 0.00 40.56 2.73
1447 1755 1.209504 CCGTCTTCCTCCAATTGCCTA 59.790 52.381 0.00 0.00 0.00 3.93
1548 1856 1.007734 GTCTCACTTGGTCGACGCA 60.008 57.895 9.92 6.05 0.00 5.24
1576 1884 1.134037 ACAGCGGGAAAAACCTGTACA 60.134 47.619 0.00 0.00 46.24 2.90
1767 2081 2.269241 GAGGAGGAAAGGCACCCG 59.731 66.667 0.00 0.00 0.00 5.28
1883 2197 1.078848 CCAAGGGGCTCGAGAAGTG 60.079 63.158 18.75 5.86 0.00 3.16
1905 2219 0.755327 GGCACAGGTTCTTGTGGGTT 60.755 55.000 14.88 0.00 46.62 4.11
2169 2483 2.353704 CGAGCAGTGGATGAACAAGGTA 60.354 50.000 0.00 0.00 0.00 3.08
2170 2484 3.674997 GAGCAGTGGATGAACAAGGTAA 58.325 45.455 0.00 0.00 0.00 2.85
2225 2542 0.397535 AGAGGGTATAAACGCGGGGA 60.398 55.000 12.47 0.00 43.08 4.81
2282 2599 1.202782 GCAGATCATGGACATGGAGCT 60.203 52.381 11.98 4.95 39.24 4.09
2294 2611 3.071206 GGAGCTGGAGAGACGGCA 61.071 66.667 0.00 0.00 45.17 5.69
2344 2661 0.995728 GAAGAGCGCTCAAGCAGTAC 59.004 55.000 36.87 15.28 42.21 2.73
2397 2760 6.401688 CGTTCACCGAGTTTATGAAGCAAATA 60.402 38.462 0.00 0.00 39.56 1.40
2400 2763 6.535150 TCACCGAGTTTATGAAGCAAATAGAG 59.465 38.462 0.00 0.00 0.00 2.43
2401 2764 6.313905 CACCGAGTTTATGAAGCAAATAGAGT 59.686 38.462 0.00 0.00 0.00 3.24
2402 2765 7.491372 CACCGAGTTTATGAAGCAAATAGAGTA 59.509 37.037 0.00 0.00 0.00 2.59
2403 2766 8.038944 ACCGAGTTTATGAAGCAAATAGAGTAA 58.961 33.333 0.00 0.00 0.00 2.24
2404 2767 8.328864 CCGAGTTTATGAAGCAAATAGAGTAAC 58.671 37.037 0.00 0.00 0.00 2.50
2405 2768 8.869897 CGAGTTTATGAAGCAAATAGAGTAACA 58.130 33.333 0.00 0.00 0.00 2.41
2423 2786 8.616076 AGAGTAACAATTGTAATCATTAGCAGC 58.384 33.333 12.39 0.00 0.00 5.25
2424 2787 8.279970 AGTAACAATTGTAATCATTAGCAGCA 57.720 30.769 12.39 0.00 0.00 4.41
2425 2788 8.739039 AGTAACAATTGTAATCATTAGCAGCAA 58.261 29.630 12.39 0.00 0.00 3.91
2426 2789 7.816945 AACAATTGTAATCATTAGCAGCAAC 57.183 32.000 12.39 0.00 0.00 4.17
2427 2790 7.161773 ACAATTGTAATCATTAGCAGCAACT 57.838 32.000 9.97 0.00 0.00 3.16
2428 2791 8.279970 ACAATTGTAATCATTAGCAGCAACTA 57.720 30.769 9.97 0.00 0.00 2.24
2429 2792 8.906867 ACAATTGTAATCATTAGCAGCAACTAT 58.093 29.630 9.97 0.00 0.00 2.12
2430 2793 9.390795 CAATTGTAATCATTAGCAGCAACTATC 57.609 33.333 0.00 0.00 0.00 2.08
2431 2794 7.496529 TTGTAATCATTAGCAGCAACTATCC 57.503 36.000 0.00 0.00 0.00 2.59
2432 2795 6.591001 TGTAATCATTAGCAGCAACTATCCA 58.409 36.000 0.00 0.00 0.00 3.41
2433 2796 7.226441 TGTAATCATTAGCAGCAACTATCCAT 58.774 34.615 0.00 0.00 0.00 3.41
2434 2797 6.570672 AATCATTAGCAGCAACTATCCATG 57.429 37.500 0.00 0.00 0.00 3.66
2435 2798 5.294734 TCATTAGCAGCAACTATCCATGA 57.705 39.130 0.00 0.00 0.00 3.07
2436 2799 5.683681 TCATTAGCAGCAACTATCCATGAA 58.316 37.500 0.00 0.00 0.00 2.57
2437 2800 5.761726 TCATTAGCAGCAACTATCCATGAAG 59.238 40.000 0.00 0.00 0.00 3.02
2438 2801 2.295885 AGCAGCAACTATCCATGAAGC 58.704 47.619 0.00 0.00 0.00 3.86
2439 2802 2.019249 GCAGCAACTATCCATGAAGCA 58.981 47.619 0.00 0.00 0.00 3.91
2440 2803 2.424601 GCAGCAACTATCCATGAAGCAA 59.575 45.455 0.00 0.00 0.00 3.91
2441 2804 3.119388 GCAGCAACTATCCATGAAGCAAA 60.119 43.478 0.00 0.00 0.00 3.68
2442 2805 4.441079 GCAGCAACTATCCATGAAGCAAAT 60.441 41.667 0.00 0.00 0.00 2.32
2443 2806 5.041287 CAGCAACTATCCATGAAGCAAATG 58.959 41.667 0.00 0.00 0.00 2.32
2444 2807 4.098960 AGCAACTATCCATGAAGCAAATGG 59.901 41.667 0.00 6.08 45.13 3.16
2625 3021 5.679638 GCTTTGATTCTATGTGCGGGAAATT 60.680 40.000 0.00 0.00 0.00 1.82
2627 3023 7.397892 TTTGATTCTATGTGCGGGAAATTAA 57.602 32.000 0.00 0.00 0.00 1.40
2632 3028 6.767524 TCTATGTGCGGGAAATTAATGTTT 57.232 33.333 0.00 0.00 0.00 2.83
2633 3029 7.867305 TCTATGTGCGGGAAATTAATGTTTA 57.133 32.000 0.00 0.00 0.00 2.01
2634 3030 7.925993 TCTATGTGCGGGAAATTAATGTTTAG 58.074 34.615 0.00 0.00 0.00 1.85
2690 3102 4.651994 CATATGCTTCAGACGACCAAAAC 58.348 43.478 0.00 0.00 0.00 2.43
2695 3107 3.003275 GCTTCAGACGACCAAAACAATCA 59.997 43.478 0.00 0.00 0.00 2.57
2720 4848 9.754382 CATAATAATGTCAAAAGGGATTCCAAG 57.246 33.333 4.80 0.00 34.83 3.61
2810 6093 4.845307 CCCCTCCTTCCCCTCCCC 62.845 77.778 0.00 0.00 0.00 4.81
2905 6599 3.536917 CTCGCGGGTCATAGGGCA 61.537 66.667 6.13 0.00 0.00 5.36
2980 6675 4.292145 TGGTTCATGGCGGCCCAA 62.292 61.111 17.97 3.67 46.14 4.12
2984 6679 0.820871 GTTCATGGCGGCCCAAATTA 59.179 50.000 17.97 0.00 46.14 1.40
2995 6690 3.692690 GGCCCAAATTAGGACTACAACA 58.307 45.455 0.00 0.00 0.00 3.33
2996 6691 4.278310 GGCCCAAATTAGGACTACAACAT 58.722 43.478 0.00 0.00 0.00 2.71
3008 6703 0.108774 TACAACATTGTGGTGGCCGA 59.891 50.000 7.10 0.00 39.97 5.54
3055 6751 0.037326 CAGTGTTGGCGCTTCTCCTA 60.037 55.000 7.64 0.00 32.31 2.94
3266 7363 4.708726 GCTTTGTGCACTCCATCTTAAT 57.291 40.909 19.41 0.00 42.31 1.40
3308 7406 1.639635 GGTCACTGGATGGGGCAGAT 61.640 60.000 0.00 0.00 0.00 2.90
3345 7443 2.558359 CGGATTGGGATAATTCCTTGGC 59.442 50.000 0.00 0.00 42.20 4.52
3351 7449 0.954452 GATAATTCCTTGGCCGGCTG 59.046 55.000 28.56 16.47 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
908 1201 3.135712 TGGGCCATGTGACTTATATCGTT 59.864 43.478 0.00 0.00 0.00 3.85
920 1213 0.606401 AGAAACGAGTGGGCCATGTG 60.606 55.000 10.70 4.74 0.00 3.21
941 1234 1.016130 GTGATGTGCACACTCGAGGG 61.016 60.000 24.37 14.61 46.91 4.30
955 1248 1.377725 GGTGGCCTGGTCAGTGATG 60.378 63.158 0.00 0.00 0.00 3.07
961 1269 2.580155 TTTGCTTGGTGGCCTGGTCA 62.580 55.000 3.32 0.00 0.00 4.02
992 1300 1.875963 GGCGTTGACATTGGAGTGG 59.124 57.895 0.00 0.00 0.00 4.00
1183 1491 3.462678 GGAGTGGACGGAGAGGGC 61.463 72.222 0.00 0.00 0.00 5.19
1388 1696 1.132657 TGGAGAAGAACAGGTACCCCA 60.133 52.381 8.74 2.15 0.00 4.96
1447 1755 3.747976 GCGCCCGGAGCAAAACAT 61.748 61.111 15.48 0.00 44.04 2.71
1548 1856 2.377628 TTTTCCCGCTGTCGAGCACT 62.378 55.000 0.00 0.00 46.62 4.40
1565 1873 1.937899 GCACAGTCGTGTACAGGTTTT 59.062 47.619 14.78 0.31 45.50 2.43
1566 1874 1.138266 AGCACAGTCGTGTACAGGTTT 59.862 47.619 14.78 2.62 45.50 3.27
1567 1875 0.750850 AGCACAGTCGTGTACAGGTT 59.249 50.000 14.78 2.96 45.50 3.50
1576 1884 0.601558 AATACGTCCAGCACAGTCGT 59.398 50.000 0.00 0.00 38.30 4.34
1798 2112 2.355837 GAGGAACACGACGCTGCA 60.356 61.111 0.00 0.00 0.00 4.41
1883 2197 2.594592 ACAAGAACCTGTGCCCGC 60.595 61.111 0.00 0.00 0.00 6.13
2045 2359 1.807165 CCAGTGGATGAGTGACGCG 60.807 63.158 1.68 3.53 0.00 6.01
2169 2483 7.309990 CCAACCTTCATATCTTGGACAATGTTT 60.310 37.037 0.00 0.00 36.06 2.83
2170 2484 6.153340 CCAACCTTCATATCTTGGACAATGTT 59.847 38.462 0.00 0.00 36.06 2.71
2225 2542 4.379243 CGTCGGCCCTGACAAGCT 62.379 66.667 10.86 0.00 38.84 3.74
2282 2599 2.159819 GAGTGCTTGCCGTCTCTCCA 62.160 60.000 0.00 0.00 0.00 3.86
2294 2611 0.173708 GATCCGTTCCTCGAGTGCTT 59.826 55.000 12.31 0.00 42.86 3.91
2344 2661 2.269241 GGAGCCACCTTCCTTCCG 59.731 66.667 0.00 0.00 35.41 4.30
2397 2760 8.616076 GCTGCTAATGATTACAATTGTTACTCT 58.384 33.333 17.78 0.51 0.00 3.24
2400 2763 8.798153 GTTGCTGCTAATGATTACAATTGTTAC 58.202 33.333 17.78 9.11 0.00 2.50
2401 2764 8.739039 AGTTGCTGCTAATGATTACAATTGTTA 58.261 29.630 17.78 8.27 0.00 2.41
2402 2765 7.605449 AGTTGCTGCTAATGATTACAATTGTT 58.395 30.769 17.78 0.00 0.00 2.83
2403 2766 7.161773 AGTTGCTGCTAATGATTACAATTGT 57.838 32.000 16.68 16.68 0.00 2.71
2404 2767 9.390795 GATAGTTGCTGCTAATGATTACAATTG 57.609 33.333 3.24 3.24 0.00 2.32
2405 2768 8.571336 GGATAGTTGCTGCTAATGATTACAATT 58.429 33.333 0.00 0.00 0.00 2.32
2406 2769 7.720957 TGGATAGTTGCTGCTAATGATTACAAT 59.279 33.333 0.00 0.00 0.00 2.71
2407 2770 7.053498 TGGATAGTTGCTGCTAATGATTACAA 58.947 34.615 0.00 0.00 0.00 2.41
2408 2771 6.591001 TGGATAGTTGCTGCTAATGATTACA 58.409 36.000 0.00 0.00 0.00 2.41
2409 2772 7.388776 TCATGGATAGTTGCTGCTAATGATTAC 59.611 37.037 0.00 0.00 0.00 1.89
2410 2773 7.452562 TCATGGATAGTTGCTGCTAATGATTA 58.547 34.615 0.00 0.00 0.00 1.75
2411 2774 6.301486 TCATGGATAGTTGCTGCTAATGATT 58.699 36.000 0.00 0.00 0.00 2.57
2412 2775 5.872963 TCATGGATAGTTGCTGCTAATGAT 58.127 37.500 0.00 0.00 0.00 2.45
2413 2776 5.294734 TCATGGATAGTTGCTGCTAATGA 57.705 39.130 0.00 0.00 0.00 2.57
2414 2777 5.562307 GCTTCATGGATAGTTGCTGCTAATG 60.562 44.000 0.00 0.00 0.00 1.90
2415 2778 4.518211 GCTTCATGGATAGTTGCTGCTAAT 59.482 41.667 0.00 0.00 0.00 1.73
2416 2779 3.879295 GCTTCATGGATAGTTGCTGCTAA 59.121 43.478 0.00 0.00 0.00 3.09
2417 2780 3.118298 TGCTTCATGGATAGTTGCTGCTA 60.118 43.478 0.00 0.00 0.00 3.49
2418 2781 2.295885 GCTTCATGGATAGTTGCTGCT 58.704 47.619 0.00 0.00 0.00 4.24
2419 2782 2.019249 TGCTTCATGGATAGTTGCTGC 58.981 47.619 0.00 0.00 0.00 5.25
2420 2783 4.707030 TTTGCTTCATGGATAGTTGCTG 57.293 40.909 0.00 0.00 0.00 4.41
2421 2784 4.098960 CCATTTGCTTCATGGATAGTTGCT 59.901 41.667 3.92 0.00 43.70 3.91
2422 2785 4.098349 TCCATTTGCTTCATGGATAGTTGC 59.902 41.667 7.71 0.00 44.50 4.17
2423 2786 5.840243 TCCATTTGCTTCATGGATAGTTG 57.160 39.130 7.71 0.00 44.50 3.16
2429 2792 3.084039 GTCACTCCATTTGCTTCATGGA 58.916 45.455 10.51 10.51 46.73 3.41
2430 2793 2.165030 GGTCACTCCATTTGCTTCATGG 59.835 50.000 0.00 3.64 42.51 3.66
2431 2794 2.821378 TGGTCACTCCATTTGCTTCATG 59.179 45.455 0.00 0.00 41.93 3.07
2432 2795 3.159213 TGGTCACTCCATTTGCTTCAT 57.841 42.857 0.00 0.00 41.93 2.57
2433 2796 2.655090 TGGTCACTCCATTTGCTTCA 57.345 45.000 0.00 0.00 41.93 3.02
2443 2806 5.880332 TGCTTCATAAACTAATGGTCACTCC 59.120 40.000 0.00 0.00 0.00 3.85
2444 2807 6.985188 TGCTTCATAAACTAATGGTCACTC 57.015 37.500 0.00 0.00 0.00 3.51
2445 2808 7.094205 CCTTTGCTTCATAAACTAATGGTCACT 60.094 37.037 0.00 0.00 0.00 3.41
2491 2854 0.179073 CAGATCCTTACCCGCACCTG 60.179 60.000 0.00 0.00 0.00 4.00
2497 2860 3.195661 GCAACTTACAGATCCTTACCCG 58.804 50.000 0.00 0.00 0.00 5.28
2606 2974 6.970484 ACATTAATTTCCCGCACATAGAATC 58.030 36.000 0.00 0.00 0.00 2.52
2614 3010 7.971722 ACATAACTAAACATTAATTTCCCGCAC 59.028 33.333 0.00 0.00 0.00 5.34
2681 3093 9.566530 TTGACATTATTATGATTGTTTTGGTCG 57.433 29.630 0.00 0.00 35.65 4.79
2695 3107 8.424133 GCTTGGAATCCCTTTTGACATTATTAT 58.576 33.333 0.00 0.00 0.00 1.28
2711 3123 1.683319 GGAGAAGGTGGCTTGGAATCC 60.683 57.143 0.00 0.00 0.00 3.01
2712 3124 1.683319 GGGAGAAGGTGGCTTGGAATC 60.683 57.143 0.00 0.00 0.00 2.52
2713 3125 0.332972 GGGAGAAGGTGGCTTGGAAT 59.667 55.000 0.00 0.00 0.00 3.01
2714 3126 1.767692 GGGAGAAGGTGGCTTGGAA 59.232 57.895 0.00 0.00 0.00 3.53
2717 4845 1.301293 GAGGGGAGAAGGTGGCTTG 59.699 63.158 0.00 0.00 0.00 4.01
2720 4848 3.412408 GGGAGGGGAGAAGGTGGC 61.412 72.222 0.00 0.00 0.00 5.01
2760 5393 2.593956 GGGTTGGAGCCTCTCGGTT 61.594 63.158 0.00 0.00 31.81 4.44
2815 6098 3.277133 CCACCAATGGCAACGGAG 58.723 61.111 12.09 4.51 39.82 4.63
2959 6654 1.754234 GGCCGCCATGAACCAGATT 60.754 57.895 3.91 0.00 0.00 2.40
2980 6675 5.710099 CCACCACAATGTTGTAGTCCTAATT 59.290 40.000 0.00 0.00 39.91 1.40
2984 6679 2.814097 GCCACCACAATGTTGTAGTCCT 60.814 50.000 0.00 0.00 39.91 3.85
3049 6745 1.074084 CTGCCCTAGATCGGTAGGAGA 59.926 57.143 9.17 0.00 42.18 3.71
3055 6751 1.152440 CCCTCTGCCCTAGATCGGT 60.152 63.158 0.00 0.00 34.21 4.69
3089 6785 3.878667 GCCATCTTAGGGGCCGCT 61.879 66.667 27.11 27.11 44.53 5.52
3226 7177 1.589414 CAAGGATTGGAGGAGGGAGT 58.411 55.000 0.00 0.00 43.94 3.85
3308 7406 2.762459 CGAATCCCCACCTCCCGA 60.762 66.667 0.00 0.00 0.00 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.