Multiple sequence alignment - TraesCS7B01G245500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G245500 chr7B 100.000 3618 0 0 1 3618 454180608 454184225 0.000000e+00 6682.0
1 TraesCS7B01G245500 chr7B 77.372 137 23 8 492 624 606225387 606225519 1.390000e-09 75.0
2 TraesCS7B01G245500 chr7D 94.066 2410 101 19 520 2910 437202287 437204673 0.000000e+00 3620.0
3 TraesCS7B01G245500 chr7D 90.385 364 27 5 3162 3520 437208000 437208360 4.230000e-129 472.0
4 TraesCS7B01G245500 chr7D 89.098 266 14 5 2906 3169 437206354 437206606 2.100000e-82 316.0
5 TraesCS7B01G245500 chr7A 88.940 1510 73 43 1579 3039 487480064 487481528 0.000000e+00 1777.0
6 TraesCS7B01G245500 chr7A 92.708 768 39 8 736 1496 487478964 487479721 0.000000e+00 1092.0
7 TraesCS7B01G245500 chr3B 93.988 682 41 0 1939 2620 829392294 829392975 0.000000e+00 1033.0
8 TraesCS7B01G245500 chr3B 85.618 591 54 14 849 1431 829391613 829392180 3.110000e-165 592.0
9 TraesCS7B01G245500 chr3B 78.730 677 142 2 1943 2618 64794626 64795301 5.510000e-123 451.0
10 TraesCS7B01G245500 chr3A 92.384 709 51 1 1939 2644 746462856 746463564 0.000000e+00 1007.0
11 TraesCS7B01G245500 chr3A 86.371 587 53 10 849 1431 746462180 746462743 1.850000e-172 616.0
12 TraesCS7B01G245500 chr3D 93.255 682 46 0 1939 2620 611673983 611674664 0.000000e+00 1005.0
13 TraesCS7B01G245500 chr3D 85.009 587 61 16 849 1431 611673286 611673849 4.050000e-159 571.0
14 TraesCS7B01G245500 chr6D 87.940 738 89 0 1903 2640 3345826 3345089 0.000000e+00 870.0
15 TraesCS7B01G245500 chr6D 83.308 653 62 21 858 1506 3347319 3346710 3.160000e-155 558.0
16 TraesCS7B01G245500 chr6B 87.940 738 89 0 1903 2640 6629243 6628506 0.000000e+00 870.0
17 TraesCS7B01G245500 chr6B 89.009 464 46 2 1000 1459 6630538 6630076 1.460000e-158 569.0
18 TraesCS7B01G245500 chr6A 87.145 739 93 2 1903 2640 2178737 2178000 0.000000e+00 837.0
19 TraesCS7B01G245500 chr6A 82.595 655 67 21 856 1506 2180809 2180198 5.320000e-148 534.0
20 TraesCS7B01G245500 chr1D 87.459 303 31 2 1127 1422 460527044 460527346 3.460000e-90 342.0
21 TraesCS7B01G245500 chr4B 93.182 44 1 2 3524 3567 488139051 488139010 3.020000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G245500 chr7B 454180608 454184225 3617 False 6682.000000 6682 100.0000 1 3618 1 chr7B.!!$F1 3617
1 TraesCS7B01G245500 chr7D 437202287 437208360 6073 False 1469.333333 3620 91.1830 520 3520 3 chr7D.!!$F1 3000
2 TraesCS7B01G245500 chr7A 487478964 487481528 2564 False 1434.500000 1777 90.8240 736 3039 2 chr7A.!!$F1 2303
3 TraesCS7B01G245500 chr3B 829391613 829392975 1362 False 812.500000 1033 89.8030 849 2620 2 chr3B.!!$F2 1771
4 TraesCS7B01G245500 chr3B 64794626 64795301 675 False 451.000000 451 78.7300 1943 2618 1 chr3B.!!$F1 675
5 TraesCS7B01G245500 chr3A 746462180 746463564 1384 False 811.500000 1007 89.3775 849 2644 2 chr3A.!!$F1 1795
6 TraesCS7B01G245500 chr3D 611673286 611674664 1378 False 788.000000 1005 89.1320 849 2620 2 chr3D.!!$F1 1771
7 TraesCS7B01G245500 chr6D 3345089 3347319 2230 True 714.000000 870 85.6240 858 2640 2 chr6D.!!$R1 1782
8 TraesCS7B01G245500 chr6B 6628506 6630538 2032 True 719.500000 870 88.4745 1000 2640 2 chr6B.!!$R1 1640
9 TraesCS7B01G245500 chr6A 2178000 2180809 2809 True 685.500000 837 84.8700 856 2640 2 chr6A.!!$R1 1784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.032952 TCAAAACCTCTCGGTGGTCG 59.967 55.0 0.0 0.0 44.73 4.79 F
115 116 0.038159 GTGACGCTTGCCTACTCACT 60.038 55.0 0.0 0.0 0.00 3.41 F
315 316 0.108992 TCGATCTACCAACGTGTGCC 60.109 55.0 0.0 0.0 0.00 5.01 F
420 421 0.178964 CAAGTGACCCACCCACCAAT 60.179 55.0 0.0 0.0 34.49 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1679 2130 0.884704 GTTCGGTTCTGCTTGGCTGA 60.885 55.00 0.00 0.00 34.87 4.26 R
1755 2208 4.462133 TGTGAACCCAAAATTCGTCCTTA 58.538 39.13 0.00 0.00 0.00 2.69 R
1887 3451 5.846203 ACAACTCATTTCCACATCTTTTGG 58.154 37.50 0.00 0.00 35.18 3.28 R
2627 4212 1.989966 TTCTCAGATCGGCGGACGTC 61.990 60.00 7.13 7.13 44.69 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.956987 CTGCGAAGGGGTTGCAAG 59.043 61.111 0.00 0.00 46.39 4.01
18 19 2.597217 TGCGAAGGGGTTGCAAGG 60.597 61.111 0.00 0.00 44.09 3.61
19 20 2.597510 GCGAAGGGGTTGCAAGGT 60.598 61.111 0.00 0.00 36.53 3.50
20 21 2.200337 GCGAAGGGGTTGCAAGGTT 61.200 57.895 0.00 0.00 36.53 3.50
21 22 1.956802 CGAAGGGGTTGCAAGGTTC 59.043 57.895 0.00 0.00 0.00 3.62
22 23 0.821711 CGAAGGGGTTGCAAGGTTCA 60.822 55.000 0.00 0.00 0.00 3.18
23 24 1.408969 GAAGGGGTTGCAAGGTTCAA 58.591 50.000 0.00 0.00 0.00 2.69
24 25 1.341209 GAAGGGGTTGCAAGGTTCAAG 59.659 52.381 0.00 0.00 0.00 3.02
25 26 0.555769 AGGGGTTGCAAGGTTCAAGA 59.444 50.000 0.00 0.00 0.00 3.02
26 27 0.673985 GGGGTTGCAAGGTTCAAGAC 59.326 55.000 0.00 0.00 0.00 3.01
27 28 1.692411 GGGTTGCAAGGTTCAAGACT 58.308 50.000 0.00 0.00 0.00 3.24
28 29 1.609072 GGGTTGCAAGGTTCAAGACTC 59.391 52.381 0.00 0.00 0.00 3.36
29 30 2.576615 GGTTGCAAGGTTCAAGACTCT 58.423 47.619 0.00 0.00 0.00 3.24
30 31 2.952310 GGTTGCAAGGTTCAAGACTCTT 59.048 45.455 0.00 0.00 0.00 2.85
31 32 3.381590 GGTTGCAAGGTTCAAGACTCTTT 59.618 43.478 0.00 0.00 0.00 2.52
32 33 4.142160 GGTTGCAAGGTTCAAGACTCTTTT 60.142 41.667 0.00 0.00 0.00 2.27
33 34 4.637483 TGCAAGGTTCAAGACTCTTTTG 57.363 40.909 0.00 0.00 0.00 2.44
34 35 4.016444 TGCAAGGTTCAAGACTCTTTTGT 58.984 39.130 0.00 0.00 0.00 2.83
35 36 4.142403 TGCAAGGTTCAAGACTCTTTTGTG 60.142 41.667 0.00 0.00 0.00 3.33
36 37 4.096382 GCAAGGTTCAAGACTCTTTTGTGA 59.904 41.667 0.00 0.00 0.00 3.58
37 38 5.731686 GCAAGGTTCAAGACTCTTTTGTGAG 60.732 44.000 0.00 0.00 39.78 3.51
38 39 3.879892 AGGTTCAAGACTCTTTTGTGAGC 59.120 43.478 0.00 0.00 37.58 4.26
39 40 3.003793 GGTTCAAGACTCTTTTGTGAGCC 59.996 47.826 0.00 0.00 37.58 4.70
40 41 2.851195 TCAAGACTCTTTTGTGAGCCC 58.149 47.619 0.00 0.00 37.58 5.19
41 42 1.532868 CAAGACTCTTTTGTGAGCCCG 59.467 52.381 0.00 0.00 37.58 6.13
42 43 0.035458 AGACTCTTTTGTGAGCCCGG 59.965 55.000 0.00 0.00 37.58 5.73
43 44 0.034896 GACTCTTTTGTGAGCCCGGA 59.965 55.000 0.73 0.00 37.58 5.14
44 45 0.035458 ACTCTTTTGTGAGCCCGGAG 59.965 55.000 0.73 0.00 37.58 4.63
45 46 0.035458 CTCTTTTGTGAGCCCGGAGT 59.965 55.000 0.73 0.00 0.00 3.85
46 47 0.034896 TCTTTTGTGAGCCCGGAGTC 59.965 55.000 0.73 0.00 0.00 3.36
47 48 1.291877 CTTTTGTGAGCCCGGAGTCG 61.292 60.000 0.73 0.00 0.00 4.18
57 58 4.570663 CGGAGTCGGGCGACATCC 62.571 72.222 0.00 4.21 46.76 3.51
58 59 4.222847 GGAGTCGGGCGACATCCC 62.223 72.222 0.00 0.00 46.76 3.85
59 60 4.222847 GAGTCGGGCGACATCCCC 62.223 72.222 0.00 0.00 46.76 4.81
61 62 3.861797 GTCGGGCGACATCCCCAT 61.862 66.667 0.00 0.00 43.56 4.00
62 63 2.123208 TCGGGCGACATCCCCATA 60.123 61.111 0.00 0.00 43.56 2.74
63 64 1.535444 TCGGGCGACATCCCCATAT 60.535 57.895 0.00 0.00 43.56 1.78
64 65 0.251877 TCGGGCGACATCCCCATATA 60.252 55.000 0.00 0.00 43.56 0.86
65 66 0.830648 CGGGCGACATCCCCATATAT 59.169 55.000 0.00 0.00 43.56 0.86
66 67 1.202533 CGGGCGACATCCCCATATATC 60.203 57.143 0.00 0.00 43.56 1.63
67 68 1.202533 GGGCGACATCCCCATATATCG 60.203 57.143 0.00 0.00 42.36 2.92
68 69 1.571919 GCGACATCCCCATATATCGC 58.428 55.000 0.29 0.29 46.68 4.58
69 70 2.959507 CGACATCCCCATATATCGCA 57.040 50.000 0.00 0.00 0.00 5.10
70 71 2.540515 CGACATCCCCATATATCGCAC 58.459 52.381 0.00 0.00 0.00 5.34
71 72 2.166459 CGACATCCCCATATATCGCACT 59.834 50.000 0.00 0.00 0.00 4.40
72 73 3.735208 CGACATCCCCATATATCGCACTC 60.735 52.174 0.00 0.00 0.00 3.51
73 74 2.501723 ACATCCCCATATATCGCACTCC 59.498 50.000 0.00 0.00 0.00 3.85
74 75 1.182667 TCCCCATATATCGCACTCCG 58.817 55.000 0.00 0.00 38.61 4.63
84 85 1.153353 TCGCACTCCGAATCAAAACC 58.847 50.000 0.00 0.00 44.21 3.27
85 86 1.156736 CGCACTCCGAATCAAAACCT 58.843 50.000 0.00 0.00 40.02 3.50
86 87 1.128692 CGCACTCCGAATCAAAACCTC 59.871 52.381 0.00 0.00 40.02 3.85
87 88 2.427506 GCACTCCGAATCAAAACCTCT 58.572 47.619 0.00 0.00 0.00 3.69
88 89 2.416893 GCACTCCGAATCAAAACCTCTC 59.583 50.000 0.00 0.00 0.00 3.20
89 90 2.668457 CACTCCGAATCAAAACCTCTCG 59.332 50.000 0.00 0.00 0.00 4.04
92 93 1.732259 CCGAATCAAAACCTCTCGGTG 59.268 52.381 0.72 0.00 44.73 4.94
93 94 1.732259 CGAATCAAAACCTCTCGGTGG 59.268 52.381 0.00 0.00 44.73 4.61
94 95 2.779506 GAATCAAAACCTCTCGGTGGT 58.220 47.619 0.00 0.00 44.73 4.16
95 96 2.474410 ATCAAAACCTCTCGGTGGTC 57.526 50.000 0.00 0.00 44.73 4.02
96 97 0.032952 TCAAAACCTCTCGGTGGTCG 59.967 55.000 0.00 0.00 44.73 4.79
97 98 0.249741 CAAAACCTCTCGGTGGTCGT 60.250 55.000 0.00 0.00 44.73 4.34
98 99 0.249741 AAAACCTCTCGGTGGTCGTG 60.250 55.000 0.00 0.00 44.73 4.35
99 100 1.111116 AAACCTCTCGGTGGTCGTGA 61.111 55.000 0.00 0.00 44.73 4.35
100 101 1.803366 AACCTCTCGGTGGTCGTGAC 61.803 60.000 0.00 0.00 44.73 3.67
101 102 2.176055 CTCTCGGTGGTCGTGACG 59.824 66.667 0.00 0.00 36.60 4.35
102 103 3.948086 CTCTCGGTGGTCGTGACGC 62.948 68.421 0.00 0.00 36.60 5.19
103 104 4.039357 CTCGGTGGTCGTGACGCT 62.039 66.667 0.00 0.00 40.32 5.07
104 105 3.553437 CTCGGTGGTCGTGACGCTT 62.553 63.158 0.00 0.00 40.32 4.68
105 106 3.403057 CGGTGGTCGTGACGCTTG 61.403 66.667 0.00 0.00 0.00 4.01
106 107 3.712881 GGTGGTCGTGACGCTTGC 61.713 66.667 0.00 0.00 0.00 4.01
107 108 3.712881 GTGGTCGTGACGCTTGCC 61.713 66.667 0.00 0.31 0.00 4.52
108 109 3.923864 TGGTCGTGACGCTTGCCT 61.924 61.111 0.00 0.00 0.00 4.75
109 110 2.260434 GGTCGTGACGCTTGCCTA 59.740 61.111 0.00 0.00 0.00 3.93
110 111 2.092882 GGTCGTGACGCTTGCCTAC 61.093 63.158 0.00 0.00 0.00 3.18
111 112 1.080705 GTCGTGACGCTTGCCTACT 60.081 57.895 0.00 0.00 0.00 2.57
112 113 1.071567 GTCGTGACGCTTGCCTACTC 61.072 60.000 0.00 0.00 0.00 2.59
113 114 1.080772 CGTGACGCTTGCCTACTCA 60.081 57.895 0.00 0.00 0.00 3.41
114 115 1.344942 CGTGACGCTTGCCTACTCAC 61.345 60.000 0.00 0.00 0.00 3.51
115 116 0.038159 GTGACGCTTGCCTACTCACT 60.038 55.000 0.00 0.00 0.00 3.41
116 117 0.243907 TGACGCTTGCCTACTCACTC 59.756 55.000 0.00 0.00 0.00 3.51
117 118 0.798771 GACGCTTGCCTACTCACTCG 60.799 60.000 0.00 0.00 0.00 4.18
118 119 1.213013 CGCTTGCCTACTCACTCGT 59.787 57.895 0.00 0.00 0.00 4.18
119 120 1.073216 CGCTTGCCTACTCACTCGTG 61.073 60.000 0.00 0.00 0.00 4.35
120 121 1.355066 GCTTGCCTACTCACTCGTGC 61.355 60.000 0.00 0.00 0.00 5.34
121 122 0.737715 CTTGCCTACTCACTCGTGCC 60.738 60.000 0.00 0.00 0.00 5.01
122 123 2.202623 GCCTACTCACTCGTGCCG 60.203 66.667 0.00 0.00 0.00 5.69
123 124 2.202623 CCTACTCACTCGTGCCGC 60.203 66.667 0.00 0.00 0.00 6.53
124 125 2.577112 CTACTCACTCGTGCCGCG 60.577 66.667 0.00 0.00 43.01 6.46
125 126 4.771356 TACTCACTCGTGCCGCGC 62.771 66.667 0.00 0.00 41.07 6.86
153 154 3.118905 GGTACCTGGCAGAGAATCATC 57.881 52.381 17.94 0.00 37.82 2.92
154 155 2.703007 GGTACCTGGCAGAGAATCATCT 59.297 50.000 17.94 0.00 37.82 2.90
164 165 3.110447 GAGAATCATCTCCAGCTCACC 57.890 52.381 0.00 0.00 45.35 4.02
165 166 1.411977 AGAATCATCTCCAGCTCACCG 59.588 52.381 0.00 0.00 0.00 4.94
166 167 0.179062 AATCATCTCCAGCTCACCGC 60.179 55.000 0.00 0.00 39.57 5.68
177 178 2.080286 GCTCACCGCTCTGTTAAAGA 57.920 50.000 0.00 0.00 35.14 2.52
178 179 1.727335 GCTCACCGCTCTGTTAAAGAC 59.273 52.381 0.00 0.00 35.14 3.01
179 180 1.986378 CTCACCGCTCTGTTAAAGACG 59.014 52.381 0.00 0.00 32.57 4.18
180 181 1.610038 TCACCGCTCTGTTAAAGACGA 59.390 47.619 0.00 0.00 33.78 4.20
181 182 1.719780 CACCGCTCTGTTAAAGACGAC 59.280 52.381 0.00 0.00 33.78 4.34
182 183 1.338973 ACCGCTCTGTTAAAGACGACA 59.661 47.619 0.00 0.00 33.78 4.35
183 184 2.223876 ACCGCTCTGTTAAAGACGACAA 60.224 45.455 0.00 0.00 33.78 3.18
184 185 2.993899 CCGCTCTGTTAAAGACGACAAT 59.006 45.455 0.00 0.00 33.78 2.71
185 186 3.181530 CCGCTCTGTTAAAGACGACAATG 60.182 47.826 0.00 0.00 33.78 2.82
186 187 3.673338 CGCTCTGTTAAAGACGACAATGA 59.327 43.478 0.00 0.00 33.78 2.57
187 188 4.201532 CGCTCTGTTAAAGACGACAATGAG 60.202 45.833 0.00 0.00 33.78 2.90
188 189 4.434857 GCTCTGTTAAAGACGACAATGAGC 60.435 45.833 0.00 0.00 37.11 4.26
189 190 4.627058 TCTGTTAAAGACGACAATGAGCA 58.373 39.130 0.00 0.00 0.00 4.26
190 191 5.053811 TCTGTTAAAGACGACAATGAGCAA 58.946 37.500 0.00 0.00 0.00 3.91
191 192 5.050363 TCTGTTAAAGACGACAATGAGCAAC 60.050 40.000 0.00 0.00 0.00 4.17
192 193 4.572795 TGTTAAAGACGACAATGAGCAACA 59.427 37.500 0.00 0.00 0.00 3.33
193 194 5.238432 TGTTAAAGACGACAATGAGCAACAT 59.762 36.000 0.00 0.00 41.45 2.71
194 195 6.425417 TGTTAAAGACGACAATGAGCAACATA 59.575 34.615 0.00 0.00 38.38 2.29
195 196 5.940192 AAAGACGACAATGAGCAACATAA 57.060 34.783 0.00 0.00 38.38 1.90
196 197 5.536554 AAGACGACAATGAGCAACATAAG 57.463 39.130 0.00 0.00 38.38 1.73
197 198 3.935203 AGACGACAATGAGCAACATAAGG 59.065 43.478 0.00 0.00 38.38 2.69
198 199 3.674997 ACGACAATGAGCAACATAAGGT 58.325 40.909 0.00 0.00 38.38 3.50
199 200 3.436704 ACGACAATGAGCAACATAAGGTG 59.563 43.478 0.00 0.00 38.38 4.00
200 201 3.181507 CGACAATGAGCAACATAAGGTGG 60.182 47.826 0.00 0.00 38.38 4.61
211 212 4.568072 ACATAAGGTGGCTATGTTGTCA 57.432 40.909 0.00 0.00 36.76 3.58
212 213 5.116084 ACATAAGGTGGCTATGTTGTCAT 57.884 39.130 0.00 0.00 36.76 3.06
213 214 6.247229 ACATAAGGTGGCTATGTTGTCATA 57.753 37.500 0.00 0.00 36.76 2.15
221 222 2.755650 CTATGTTGTCATAGGGCCGAC 58.244 52.381 0.00 0.00 45.65 4.79
222 223 1.204146 ATGTTGTCATAGGGCCGACT 58.796 50.000 10.73 0.00 33.18 4.18
223 224 0.249120 TGTTGTCATAGGGCCGACTG 59.751 55.000 10.73 4.47 33.18 3.51
224 225 0.462047 GTTGTCATAGGGCCGACTGG 60.462 60.000 10.73 0.00 38.77 4.00
236 237 4.891566 GACTGGCCTACTGTCGTG 57.108 61.111 3.32 0.00 38.11 4.35
237 238 1.446272 GACTGGCCTACTGTCGTGC 60.446 63.158 3.32 0.00 38.11 5.34
238 239 2.154798 GACTGGCCTACTGTCGTGCA 62.155 60.000 3.32 0.00 38.11 4.57
273 274 3.744719 CTCGAAGCCGTCCCGTCA 61.745 66.667 0.00 0.00 37.05 4.35
274 275 3.966026 CTCGAAGCCGTCCCGTCAC 62.966 68.421 0.00 0.00 37.05 3.67
281 282 3.708734 CGTCCCGTCACGGCAAAC 61.709 66.667 12.05 7.66 46.86 2.93
282 283 2.280592 GTCCCGTCACGGCAAACT 60.281 61.111 12.05 0.00 46.86 2.66
283 284 2.029964 TCCCGTCACGGCAAACTC 59.970 61.111 12.05 0.00 46.86 3.01
284 285 2.280524 CCCGTCACGGCAAACTCA 60.281 61.111 12.05 0.00 46.86 3.41
285 286 1.671054 CCCGTCACGGCAAACTCAT 60.671 57.895 12.05 0.00 46.86 2.90
286 287 1.635663 CCCGTCACGGCAAACTCATC 61.636 60.000 12.05 0.00 46.86 2.92
287 288 0.670546 CCGTCACGGCAAACTCATCT 60.671 55.000 1.50 0.00 41.17 2.90
288 289 0.716108 CGTCACGGCAAACTCATCTC 59.284 55.000 0.00 0.00 0.00 2.75
289 290 1.795768 GTCACGGCAAACTCATCTCA 58.204 50.000 0.00 0.00 0.00 3.27
290 291 2.350522 GTCACGGCAAACTCATCTCAT 58.649 47.619 0.00 0.00 0.00 2.90
291 292 2.349886 GTCACGGCAAACTCATCTCATC 59.650 50.000 0.00 0.00 0.00 2.92
292 293 2.234661 TCACGGCAAACTCATCTCATCT 59.765 45.455 0.00 0.00 0.00 2.90
293 294 2.350804 CACGGCAAACTCATCTCATCTG 59.649 50.000 0.00 0.00 0.00 2.90
294 295 2.234661 ACGGCAAACTCATCTCATCTGA 59.765 45.455 0.00 0.00 0.00 3.27
295 296 3.264947 CGGCAAACTCATCTCATCTGAA 58.735 45.455 0.00 0.00 0.00 3.02
296 297 3.875727 CGGCAAACTCATCTCATCTGAAT 59.124 43.478 0.00 0.00 0.00 2.57
297 298 4.025061 CGGCAAACTCATCTCATCTGAATC 60.025 45.833 0.00 0.00 0.00 2.52
298 299 4.025061 GGCAAACTCATCTCATCTGAATCG 60.025 45.833 0.00 0.00 0.00 3.34
299 300 4.807834 GCAAACTCATCTCATCTGAATCGA 59.192 41.667 0.00 0.00 0.00 3.59
300 301 5.466058 GCAAACTCATCTCATCTGAATCGAT 59.534 40.000 0.00 0.00 0.00 3.59
301 302 6.346758 GCAAACTCATCTCATCTGAATCGATC 60.347 42.308 0.00 0.00 0.00 3.69
302 303 6.653526 AACTCATCTCATCTGAATCGATCT 57.346 37.500 0.00 0.00 0.00 2.75
303 304 7.757941 AACTCATCTCATCTGAATCGATCTA 57.242 36.000 0.00 0.00 0.00 1.98
304 305 7.144722 ACTCATCTCATCTGAATCGATCTAC 57.855 40.000 0.00 0.00 0.00 2.59
305 306 6.150976 ACTCATCTCATCTGAATCGATCTACC 59.849 42.308 0.00 0.00 0.00 3.18
306 307 6.006449 TCATCTCATCTGAATCGATCTACCA 58.994 40.000 0.00 0.00 0.00 3.25
307 308 6.491403 TCATCTCATCTGAATCGATCTACCAA 59.509 38.462 0.00 0.00 0.00 3.67
308 309 6.078202 TCTCATCTGAATCGATCTACCAAC 57.922 41.667 0.00 0.00 0.00 3.77
309 310 4.860072 TCATCTGAATCGATCTACCAACG 58.140 43.478 0.00 0.00 0.00 4.10
310 311 4.338400 TCATCTGAATCGATCTACCAACGT 59.662 41.667 0.00 0.00 0.00 3.99
311 312 4.028852 TCTGAATCGATCTACCAACGTG 57.971 45.455 0.00 0.00 0.00 4.49
312 313 3.442625 TCTGAATCGATCTACCAACGTGT 59.557 43.478 0.00 0.00 0.00 4.49
313 314 3.507786 TGAATCGATCTACCAACGTGTG 58.492 45.455 0.00 0.00 0.00 3.82
314 315 1.922570 ATCGATCTACCAACGTGTGC 58.077 50.000 0.00 0.00 0.00 4.57
315 316 0.108992 TCGATCTACCAACGTGTGCC 60.109 55.000 0.00 0.00 0.00 5.01
316 317 1.082117 CGATCTACCAACGTGTGCCC 61.082 60.000 0.00 0.00 0.00 5.36
317 318 0.249398 GATCTACCAACGTGTGCCCT 59.751 55.000 0.00 0.00 0.00 5.19
318 319 0.249398 ATCTACCAACGTGTGCCCTC 59.751 55.000 0.00 0.00 0.00 4.30
319 320 1.116536 TCTACCAACGTGTGCCCTCA 61.117 55.000 0.00 0.00 0.00 3.86
320 321 0.949105 CTACCAACGTGTGCCCTCAC 60.949 60.000 0.00 0.00 43.40 3.51
321 322 1.404479 TACCAACGTGTGCCCTCACT 61.404 55.000 0.00 0.00 43.49 3.41
322 323 1.961277 CCAACGTGTGCCCTCACTC 60.961 63.158 0.00 0.00 43.49 3.51
326 327 2.421739 GTGTGCCCTCACTCGTGT 59.578 61.111 0.00 0.00 43.49 4.49
327 328 1.956170 GTGTGCCCTCACTCGTGTG 60.956 63.158 11.32 11.32 43.49 3.82
338 339 2.908634 CACTCGTGTGAAAGCATTGAC 58.091 47.619 12.15 0.00 46.55 3.18
339 340 2.287644 CACTCGTGTGAAAGCATTGACA 59.712 45.455 12.15 0.00 46.55 3.58
340 341 2.545526 ACTCGTGTGAAAGCATTGACAG 59.454 45.455 0.00 0.00 0.00 3.51
341 342 1.872952 TCGTGTGAAAGCATTGACAGG 59.127 47.619 7.50 7.50 31.89 4.00
342 343 1.872952 CGTGTGAAAGCATTGACAGGA 59.127 47.619 8.00 0.00 32.15 3.86
343 344 2.485426 CGTGTGAAAGCATTGACAGGAT 59.515 45.455 8.00 0.00 32.15 3.24
344 345 3.425359 CGTGTGAAAGCATTGACAGGATC 60.425 47.826 8.00 0.00 32.15 3.36
345 346 3.755378 GTGTGAAAGCATTGACAGGATCT 59.245 43.478 0.00 0.00 0.00 2.75
346 347 3.754850 TGTGAAAGCATTGACAGGATCTG 59.245 43.478 0.00 0.00 37.52 2.90
347 348 2.751259 TGAAAGCATTGACAGGATCTGC 59.249 45.455 0.00 0.00 34.37 4.26
348 349 2.502142 AAGCATTGACAGGATCTGCA 57.498 45.000 4.00 0.00 34.37 4.41
349 350 1.747709 AGCATTGACAGGATCTGCAC 58.252 50.000 4.00 0.00 34.37 4.57
350 351 0.376152 GCATTGACAGGATCTGCACG 59.624 55.000 0.00 0.00 34.37 5.34
351 352 1.012086 CATTGACAGGATCTGCACGG 58.988 55.000 0.00 0.00 34.37 4.94
352 353 0.904649 ATTGACAGGATCTGCACGGA 59.095 50.000 0.00 0.00 34.37 4.69
353 354 0.247460 TTGACAGGATCTGCACGGAG 59.753 55.000 0.00 0.00 34.37 4.63
354 355 1.520342 GACAGGATCTGCACGGAGC 60.520 63.158 0.00 0.00 45.96 4.70
363 364 4.831307 GCACGGAGCGACGTCGAT 62.831 66.667 39.74 35.55 46.75 3.59
369 370 3.437795 AGCGACGTCGATCCGGTT 61.438 61.111 39.74 13.08 43.02 4.44
370 371 2.948134 GCGACGTCGATCCGGTTC 60.948 66.667 39.74 16.64 43.02 3.62
371 372 2.277756 CGACGTCGATCCGGTTCC 60.278 66.667 33.35 0.00 43.02 3.62
372 373 2.103736 GACGTCGATCCGGTTCCC 59.896 66.667 0.00 0.00 0.00 3.97
373 374 3.421687 GACGTCGATCCGGTTCCCC 62.422 68.421 0.00 0.00 0.00 4.81
374 375 3.145551 CGTCGATCCGGTTCCCCT 61.146 66.667 0.00 0.00 0.00 4.79
375 376 2.813200 GTCGATCCGGTTCCCCTC 59.187 66.667 0.00 0.00 0.00 4.30
376 377 2.056223 GTCGATCCGGTTCCCCTCA 61.056 63.158 0.00 0.00 0.00 3.86
377 378 1.075525 TCGATCCGGTTCCCCTCAT 60.076 57.895 0.00 0.00 0.00 2.90
378 379 1.069765 CGATCCGGTTCCCCTCATG 59.930 63.158 0.00 0.00 0.00 3.07
379 380 1.451936 GATCCGGTTCCCCTCATGG 59.548 63.158 0.00 0.00 0.00 3.66
380 381 1.307866 ATCCGGTTCCCCTCATGGT 60.308 57.895 0.00 0.00 0.00 3.55
381 382 1.345715 ATCCGGTTCCCCTCATGGTC 61.346 60.000 0.00 0.00 0.00 4.02
382 383 2.590092 CGGTTCCCCTCATGGTCC 59.410 66.667 0.00 0.00 0.00 4.46
383 384 2.297895 CGGTTCCCCTCATGGTCCA 61.298 63.158 0.00 0.00 0.00 4.02
384 385 1.635817 CGGTTCCCCTCATGGTCCAT 61.636 60.000 0.00 0.00 0.00 3.41
385 386 0.183731 GGTTCCCCTCATGGTCCATC 59.816 60.000 0.00 0.00 0.00 3.51
386 387 1.216990 GTTCCCCTCATGGTCCATCT 58.783 55.000 0.00 0.00 0.00 2.90
387 388 1.566231 GTTCCCCTCATGGTCCATCTT 59.434 52.381 0.00 0.00 0.00 2.40
388 389 1.511613 TCCCCTCATGGTCCATCTTC 58.488 55.000 0.00 0.00 0.00 2.87
389 390 1.216064 CCCCTCATGGTCCATCTTCA 58.784 55.000 0.00 0.00 0.00 3.02
390 391 1.565759 CCCCTCATGGTCCATCTTCAA 59.434 52.381 0.00 0.00 0.00 2.69
391 392 2.176364 CCCCTCATGGTCCATCTTCAAT 59.824 50.000 0.00 0.00 0.00 2.57
392 393 3.220110 CCCTCATGGTCCATCTTCAATG 58.780 50.000 0.00 0.00 0.00 2.82
393 394 3.220110 CCTCATGGTCCATCTTCAATGG 58.780 50.000 0.00 0.00 40.48 3.16
394 395 3.117776 CCTCATGGTCCATCTTCAATGGA 60.118 47.826 0.00 2.63 45.24 3.41
405 406 7.809238 TCCATCTTCAATGGATCTTATCAAGT 58.191 34.615 2.63 0.00 42.81 3.16
406 407 7.718314 TCCATCTTCAATGGATCTTATCAAGTG 59.282 37.037 2.63 0.00 42.81 3.16
407 408 7.718314 CCATCTTCAATGGATCTTATCAAGTGA 59.282 37.037 0.00 0.00 41.64 3.41
408 409 8.557864 CATCTTCAATGGATCTTATCAAGTGAC 58.442 37.037 0.00 0.00 37.07 3.67
409 410 7.050377 TCTTCAATGGATCTTATCAAGTGACC 58.950 38.462 0.00 0.00 37.07 4.02
410 411 5.684704 TCAATGGATCTTATCAAGTGACCC 58.315 41.667 0.00 0.00 32.80 4.46
411 412 5.191522 TCAATGGATCTTATCAAGTGACCCA 59.808 40.000 0.00 0.00 32.80 4.51
412 413 4.487714 TGGATCTTATCAAGTGACCCAC 57.512 45.455 0.00 0.00 34.10 4.61
413 414 3.199946 TGGATCTTATCAAGTGACCCACC 59.800 47.826 0.00 0.00 34.49 4.61
414 415 3.433740 GGATCTTATCAAGTGACCCACCC 60.434 52.174 0.00 0.00 34.49 4.61
415 416 2.626785 TCTTATCAAGTGACCCACCCA 58.373 47.619 0.00 0.00 34.49 4.51
416 417 2.304761 TCTTATCAAGTGACCCACCCAC 59.695 50.000 0.00 0.00 34.49 4.61
417 418 0.988832 TATCAAGTGACCCACCCACC 59.011 55.000 0.00 0.00 34.49 4.61
418 419 1.065410 ATCAAGTGACCCACCCACCA 61.065 55.000 0.00 0.00 34.49 4.17
419 420 1.228793 CAAGTGACCCACCCACCAA 59.771 57.895 0.00 0.00 34.49 3.67
420 421 0.178964 CAAGTGACCCACCCACCAAT 60.179 55.000 0.00 0.00 34.49 3.16
421 422 1.074727 CAAGTGACCCACCCACCAATA 59.925 52.381 0.00 0.00 34.49 1.90
422 423 1.681229 AGTGACCCACCCACCAATAT 58.319 50.000 0.00 0.00 34.49 1.28
423 424 2.000048 AGTGACCCACCCACCAATATT 59.000 47.619 0.00 0.00 34.49 1.28
424 425 2.381961 AGTGACCCACCCACCAATATTT 59.618 45.455 0.00 0.00 34.49 1.40
425 426 2.495669 GTGACCCACCCACCAATATTTG 59.504 50.000 0.00 0.00 0.00 2.32
426 427 2.110899 TGACCCACCCACCAATATTTGT 59.889 45.455 0.00 0.00 0.00 2.83
427 428 3.169908 GACCCACCCACCAATATTTGTT 58.830 45.455 0.00 0.00 0.00 2.83
428 429 2.903135 ACCCACCCACCAATATTTGTTG 59.097 45.455 0.00 0.00 0.00 3.33
429 430 3.169099 CCCACCCACCAATATTTGTTGA 58.831 45.455 0.00 0.00 0.00 3.18
430 431 3.580458 CCCACCCACCAATATTTGTTGAA 59.420 43.478 0.00 0.00 0.00 2.69
431 432 4.224818 CCCACCCACCAATATTTGTTGAAT 59.775 41.667 0.00 0.00 0.00 2.57
432 433 5.177326 CCACCCACCAATATTTGTTGAATG 58.823 41.667 0.00 0.00 0.00 2.67
433 434 5.279910 CCACCCACCAATATTTGTTGAATGT 60.280 40.000 0.00 0.00 0.00 2.71
434 435 6.229733 CACCCACCAATATTTGTTGAATGTT 58.770 36.000 0.00 0.00 30.17 2.71
435 436 6.709846 CACCCACCAATATTTGTTGAATGTTT 59.290 34.615 0.00 0.00 27.87 2.83
436 437 7.875041 CACCCACCAATATTTGTTGAATGTTTA 59.125 33.333 0.00 0.00 27.87 2.01
437 438 8.601546 ACCCACCAATATTTGTTGAATGTTTAT 58.398 29.630 0.00 0.00 27.87 1.40
438 439 8.881743 CCCACCAATATTTGTTGAATGTTTATG 58.118 33.333 0.00 0.00 27.87 1.90
439 440 9.434420 CCACCAATATTTGTTGAATGTTTATGT 57.566 29.630 0.00 0.00 27.87 2.29
452 453 9.677567 TTGAATGTTTATGTTTCTACTTGAAGC 57.322 29.630 0.00 0.00 35.89 3.86
453 454 8.015087 TGAATGTTTATGTTTCTACTTGAAGCG 58.985 33.333 0.00 0.00 38.50 4.68
454 455 6.854496 TGTTTATGTTTCTACTTGAAGCGT 57.146 33.333 0.00 0.00 38.50 5.07
455 456 7.949903 TGTTTATGTTTCTACTTGAAGCGTA 57.050 32.000 0.00 0.00 38.50 4.42
456 457 8.367943 TGTTTATGTTTCTACTTGAAGCGTAA 57.632 30.769 0.00 0.00 41.94 3.18
457 458 8.828644 TGTTTATGTTTCTACTTGAAGCGTAAA 58.171 29.630 12.30 12.30 45.87 2.01
484 485 8.995027 AATAATGCAGACCCTATTTATCAACA 57.005 30.769 0.00 0.00 0.00 3.33
485 486 8.995027 ATAATGCAGACCCTATTTATCAACAA 57.005 30.769 0.00 0.00 0.00 2.83
486 487 7.902920 AATGCAGACCCTATTTATCAACAAT 57.097 32.000 0.00 0.00 0.00 2.71
487 488 8.995027 AATGCAGACCCTATTTATCAACAATA 57.005 30.769 0.00 0.00 0.00 1.90
488 489 8.627208 ATGCAGACCCTATTTATCAACAATAG 57.373 34.615 0.00 0.00 34.98 1.73
489 490 7.573710 TGCAGACCCTATTTATCAACAATAGT 58.426 34.615 0.00 0.00 33.84 2.12
490 491 8.710239 TGCAGACCCTATTTATCAACAATAGTA 58.290 33.333 0.00 0.00 33.84 1.82
491 492 9.555727 GCAGACCCTATTTATCAACAATAGTAA 57.444 33.333 0.00 0.00 33.84 2.24
504 505 7.553334 TCAACAATAGTAACATGAGTACTCCC 58.447 38.462 20.11 0.00 0.00 4.30
505 506 7.399191 TCAACAATAGTAACATGAGTACTCCCT 59.601 37.037 20.11 4.85 0.00 4.20
506 507 7.349412 ACAATAGTAACATGAGTACTCCCTC 57.651 40.000 20.11 5.21 0.00 4.30
507 508 6.324254 ACAATAGTAACATGAGTACTCCCTCC 59.676 42.308 20.11 3.69 0.00 4.30
508 509 4.332683 AGTAACATGAGTACTCCCTCCA 57.667 45.455 20.11 1.84 0.00 3.86
509 510 4.884961 AGTAACATGAGTACTCCCTCCAT 58.115 43.478 20.11 4.33 0.00 3.41
510 511 4.896482 AGTAACATGAGTACTCCCTCCATC 59.104 45.833 20.11 5.78 0.00 3.51
511 512 3.697190 ACATGAGTACTCCCTCCATCT 57.303 47.619 20.11 0.00 0.00 2.90
512 513 4.816048 ACATGAGTACTCCCTCCATCTA 57.184 45.455 20.11 0.00 0.00 1.98
513 514 5.144159 ACATGAGTACTCCCTCCATCTAA 57.856 43.478 20.11 0.00 0.00 2.10
514 515 5.529289 ACATGAGTACTCCCTCCATCTAAA 58.471 41.667 20.11 0.00 0.00 1.85
515 516 6.146760 ACATGAGTACTCCCTCCATCTAAAT 58.853 40.000 20.11 0.00 0.00 1.40
516 517 7.306013 ACATGAGTACTCCCTCCATCTAAATA 58.694 38.462 20.11 0.00 0.00 1.40
517 518 7.958583 ACATGAGTACTCCCTCCATCTAAATAT 59.041 37.037 20.11 0.00 0.00 1.28
518 519 7.782897 TGAGTACTCCCTCCATCTAAATATG 57.217 40.000 20.11 0.00 0.00 1.78
523 524 9.091220 GTACTCCCTCCATCTAAATATGTAAGT 57.909 37.037 0.00 0.00 0.00 2.24
524 525 8.196378 ACTCCCTCCATCTAAATATGTAAGTC 57.804 38.462 0.00 0.00 0.00 3.01
556 557 8.992073 GTATTTTTCAAGATTGCTTTTGACCAT 58.008 29.630 0.00 0.00 33.36 3.55
557 558 6.847956 TTTTCAAGATTGCTTTTGACCATG 57.152 33.333 0.00 0.00 33.36 3.66
558 559 4.524316 TCAAGATTGCTTTTGACCATGG 57.476 40.909 11.19 11.19 30.14 3.66
559 560 3.258872 TCAAGATTGCTTTTGACCATGGG 59.741 43.478 18.09 0.00 30.14 4.00
560 561 2.893424 AGATTGCTTTTGACCATGGGT 58.107 42.857 18.09 0.99 39.44 4.51
579 580 7.202149 CCATGGGTGGGTTAGAGTAACAATATA 60.202 40.741 2.85 0.00 42.11 0.86
586 587 7.882791 TGGGTTAGAGTAACAATATATGGCATG 59.117 37.037 10.98 0.00 40.39 4.06
596 597 6.680810 ACAATATATGGCATGCATGTTACAC 58.319 36.000 26.79 10.38 0.00 2.90
598 599 6.897706 ATATATGGCATGCATGTTACACAA 57.102 33.333 26.79 15.10 0.00 3.33
600 601 3.740631 TGGCATGCATGTTACACAAAA 57.259 38.095 26.79 0.63 0.00 2.44
609 611 4.849383 GCATGTTACACAAAACATACCGTC 59.151 41.667 2.17 0.00 45.92 4.79
616 618 6.137794 ACACAAAACATACCGTCAAATTCA 57.862 33.333 0.00 0.00 0.00 2.57
711 713 6.020984 GTCAAATGCAACCTTGAAAAACAAC 58.979 36.000 9.93 0.00 33.52 3.32
726 728 9.444600 TTGAAAAACAACTAGACCCTATGTATC 57.555 33.333 0.00 0.00 33.18 2.24
727 729 8.598916 TGAAAAACAACTAGACCCTATGTATCA 58.401 33.333 0.00 0.00 0.00 2.15
728 730 9.099454 GAAAAACAACTAGACCCTATGTATCAG 57.901 37.037 0.00 0.00 0.00 2.90
729 731 6.732896 AACAACTAGACCCTATGTATCAGG 57.267 41.667 0.00 0.00 0.00 3.86
730 732 6.027025 ACAACTAGACCCTATGTATCAGGA 57.973 41.667 0.00 0.00 34.91 3.86
731 733 6.625267 ACAACTAGACCCTATGTATCAGGAT 58.375 40.000 0.00 0.00 34.91 3.24
732 734 7.076446 ACAACTAGACCCTATGTATCAGGATT 58.924 38.462 0.00 0.00 34.91 3.01
733 735 7.233757 ACAACTAGACCCTATGTATCAGGATTC 59.766 40.741 0.00 0.00 34.91 2.52
746 748 2.130193 CAGGATTCAGGATGGAGGGAA 58.870 52.381 0.00 0.00 36.16 3.97
952 976 1.135257 CCGCTCACACCAAAAACAACA 60.135 47.619 0.00 0.00 0.00 3.33
953 977 2.600731 CGCTCACACCAAAAACAACAA 58.399 42.857 0.00 0.00 0.00 2.83
954 978 2.344142 CGCTCACACCAAAAACAACAAC 59.656 45.455 0.00 0.00 0.00 3.32
957 981 4.502962 CTCACACCAAAAACAACAACCAT 58.497 39.130 0.00 0.00 0.00 3.55
1335 1359 2.908073 GCCCGTGTGCAAGTTCCTG 61.908 63.158 0.00 0.00 0.00 3.86
1459 1487 4.082125 CCCTGTTTCTTCCATACTTTGCT 58.918 43.478 0.00 0.00 0.00 3.91
1462 1490 5.106396 CCTGTTTCTTCCATACTTTGCTCAG 60.106 44.000 0.00 0.00 0.00 3.35
1516 1559 5.582665 CCCAGCATAACTCTCTCTTTAACAC 59.417 44.000 0.00 0.00 0.00 3.32
1517 1560 6.166279 CCAGCATAACTCTCTCTTTAACACA 58.834 40.000 0.00 0.00 0.00 3.72
1527 1570 7.336931 ACTCTCTCTTTAACACATCTCTCTCTC 59.663 40.741 0.00 0.00 0.00 3.20
1621 2026 2.052690 GCACGAGCTAGAGACCCCA 61.053 63.158 0.00 0.00 37.91 4.96
1640 2091 5.310857 ACCCCAAAGAGTTCATCTAGAAACT 59.689 40.000 9.16 9.16 37.23 2.66
1642 2093 5.645497 CCCAAAGAGTTCATCTAGAAACTGG 59.355 44.000 13.37 9.46 37.23 4.00
1679 2130 0.322975 ACGGCAGTCAGCTTCAGAAT 59.677 50.000 0.00 0.00 44.79 2.40
1755 2208 7.620880 TCTTGCAGTAATAATAGTCAACCACT 58.379 34.615 0.00 0.00 39.41 4.00
1801 2255 5.250774 AGCCCATTAACTAGAGGACTTTTCA 59.749 40.000 0.00 0.00 0.00 2.69
1883 3447 6.258947 GGTGATATAGCAACTCTTTTGTCTCC 59.741 42.308 0.00 0.00 0.00 3.71
1887 3451 2.872858 AGCAACTCTTTTGTCTCCGTTC 59.127 45.455 0.00 0.00 0.00 3.95
2244 3822 4.193334 CGTCATCTCCGAGGCGCA 62.193 66.667 10.83 0.00 0.00 6.09
2625 4210 4.446371 GAGTTCACCAAGTAGATCCATGG 58.554 47.826 4.97 4.97 38.91 3.66
2627 4212 1.138859 TCACCAAGTAGATCCATGGCG 59.861 52.381 6.96 0.00 36.37 5.69
2634 4219 1.792118 TAGATCCATGGCGACGTCCG 61.792 60.000 10.58 6.51 42.21 4.79
2644 4229 2.024871 GACGTCCGCCGATCTGAG 59.975 66.667 3.51 0.00 40.70 3.35
2645 4230 2.437895 ACGTCCGCCGATCTGAGA 60.438 61.111 0.00 0.00 40.70 3.27
2744 4352 5.114780 TGCTAGCTCTGAATCATTCTGAAC 58.885 41.667 17.23 4.33 37.22 3.18
2856 4464 5.831702 ATGACATGATTTCTCTCCTTTGC 57.168 39.130 0.00 0.00 0.00 3.68
2858 4466 6.053632 TGACATGATTTCTCTCCTTTGCTA 57.946 37.500 0.00 0.00 0.00 3.49
2903 4511 9.741647 GAAATGAAATGTTATTGATCTTCCTCC 57.258 33.333 0.00 0.00 0.00 4.30
3006 6309 1.115326 GTGGAGGCACCCAGCTTTTT 61.115 55.000 0.00 0.00 44.79 1.94
3007 6310 1.114722 TGGAGGCACCCAGCTTTTTG 61.115 55.000 0.00 0.00 44.79 2.44
3008 6311 1.115326 GGAGGCACCCAGCTTTTTGT 61.115 55.000 0.00 0.00 44.79 2.83
3012 6315 2.171003 GGCACCCAGCTTTTTGTAGAT 58.829 47.619 0.00 0.00 44.79 1.98
3054 6357 8.341892 AGGAAATGAATGAAAGAACTTCTACC 57.658 34.615 0.00 0.00 34.86 3.18
3059 6362 7.223260 TGAATGAAAGAACTTCTACCGAGTA 57.777 36.000 0.00 0.00 34.86 2.59
3061 6364 5.640189 TGAAAGAACTTCTACCGAGTAGG 57.360 43.478 10.08 0.00 39.45 3.18
3062 6365 5.319453 TGAAAGAACTTCTACCGAGTAGGA 58.681 41.667 0.00 2.55 37.98 2.94
3063 6366 5.182760 TGAAAGAACTTCTACCGAGTAGGAC 59.817 44.000 0.00 0.00 37.98 3.85
3067 6370 3.619419 ACTTCTACCGAGTAGGACTTCC 58.381 50.000 0.00 0.00 45.00 3.46
3068 6371 3.009916 ACTTCTACCGAGTAGGACTTCCA 59.990 47.826 0.00 0.00 45.00 3.53
3069 6372 2.996631 TCTACCGAGTAGGACTTCCAC 58.003 52.381 0.00 0.00 45.00 4.02
3071 6374 1.254954 ACCGAGTAGGACTTCCACAC 58.745 55.000 0.00 0.00 45.00 3.82
3072 6375 0.170561 CCGAGTAGGACTTCCACACG 59.829 60.000 0.00 4.76 45.00 4.49
3073 6376 1.162698 CGAGTAGGACTTCCACACGA 58.837 55.000 10.08 0.00 38.89 4.35
3074 6377 1.135746 CGAGTAGGACTTCCACACGAC 60.136 57.143 10.08 2.98 38.89 4.34
3075 6378 1.884579 GAGTAGGACTTCCACACGACA 59.115 52.381 0.00 0.00 38.89 4.35
3076 6379 2.295349 GAGTAGGACTTCCACACGACAA 59.705 50.000 0.00 0.00 38.89 3.18
3077 6380 2.897969 AGTAGGACTTCCACACGACAAT 59.102 45.455 0.00 0.00 38.89 2.71
3078 6381 2.930826 AGGACTTCCACACGACAATT 57.069 45.000 0.00 0.00 38.89 2.32
3079 6382 4.525487 AGTAGGACTTCCACACGACAATTA 59.475 41.667 0.00 0.00 38.89 1.40
3080 6383 4.553330 AGGACTTCCACACGACAATTAT 57.447 40.909 0.00 0.00 38.89 1.28
3081 6384 4.253685 AGGACTTCCACACGACAATTATG 58.746 43.478 0.00 0.00 38.89 1.90
3082 6385 4.020573 AGGACTTCCACACGACAATTATGA 60.021 41.667 0.00 0.00 38.89 2.15
3086 6389 4.379339 TCCACACGACAATTATGATCGA 57.621 40.909 5.54 0.00 39.16 3.59
3151 6454 1.741770 CTAGCCAGCGGTGGTGTTC 60.742 63.158 32.48 17.23 46.96 3.18
3171 7875 2.094894 TCTCGTTATCCGTCAAGTCGAC 59.905 50.000 7.70 7.70 41.62 4.20
3175 7879 2.913777 TATCCGTCAAGTCGACACTG 57.086 50.000 19.50 14.40 45.70 3.66
3196 7900 0.391661 TACTAGTCGTCGCTCGGGTT 60.392 55.000 0.00 0.00 40.32 4.11
3210 7914 1.302832 GGGTTGGGTCAGTCAGCTG 60.303 63.158 7.63 7.63 43.87 4.24
3227 7931 3.187022 CAGCTGAATGAAACATGTGACGA 59.813 43.478 8.42 0.00 0.00 4.20
3244 7948 4.563184 GTGACGAGTAAAGCGAATTCATCT 59.437 41.667 6.22 0.00 0.00 2.90
3258 7962 0.800683 TCATCTAACAACTCGCCGCG 60.801 55.000 6.39 6.39 0.00 6.46
3268 7972 1.226859 CTCGCCGCGGAATAACAGA 60.227 57.895 33.48 13.89 0.00 3.41
3305 8009 4.683766 TCTAGAAGGATAGAGATGGGGG 57.316 50.000 0.00 0.00 0.00 5.40
3310 8015 4.413851 AGAAGGATAGAGATGGGGGAAAAC 59.586 45.833 0.00 0.00 0.00 2.43
3311 8016 3.056832 AGGATAGAGATGGGGGAAAACC 58.943 50.000 0.00 0.00 39.11 3.27
3331 8036 2.253603 CCTATTTCAGCAAAGCAACGC 58.746 47.619 0.00 0.00 0.00 4.84
3364 8072 7.715265 TGAGATATTTTTGTAGGCGATTCTC 57.285 36.000 0.00 0.00 0.00 2.87
3475 8184 3.482436 AGCGTTAGATCTCCTAGTCAGG 58.518 50.000 0.00 0.00 44.17 3.86
3490 8199 3.305720 AGTCAGGGCATTTCCTATACGA 58.694 45.455 0.00 0.00 34.92 3.43
3520 8229 2.159747 GCGCCGGTTAAAGACAAGTAAG 60.160 50.000 1.90 0.00 0.00 2.34
3521 8230 2.414138 CGCCGGTTAAAGACAAGTAAGG 59.586 50.000 1.90 0.00 0.00 2.69
3522 8231 2.745821 GCCGGTTAAAGACAAGTAAGGG 59.254 50.000 1.90 0.00 0.00 3.95
3523 8232 2.745821 CCGGTTAAAGACAAGTAAGGGC 59.254 50.000 0.00 0.00 0.00 5.19
3524 8233 2.745821 CGGTTAAAGACAAGTAAGGGCC 59.254 50.000 0.00 0.00 0.00 5.80
3525 8234 3.558533 CGGTTAAAGACAAGTAAGGGCCT 60.559 47.826 0.00 0.00 0.00 5.19
3526 8235 4.008330 GGTTAAAGACAAGTAAGGGCCTC 58.992 47.826 6.46 0.00 0.00 4.70
3527 8236 4.263374 GGTTAAAGACAAGTAAGGGCCTCT 60.263 45.833 6.46 0.00 0.00 3.69
3528 8237 5.314529 GTTAAAGACAAGTAAGGGCCTCTT 58.685 41.667 6.46 3.63 39.40 2.85
3529 8238 4.455070 AAAGACAAGTAAGGGCCTCTTT 57.545 40.909 6.46 7.73 36.93 2.52
3530 8239 4.455070 AAGACAAGTAAGGGCCTCTTTT 57.545 40.909 6.46 0.00 36.93 2.27
3531 8240 3.756117 AGACAAGTAAGGGCCTCTTTTG 58.244 45.455 6.46 13.90 36.93 2.44
3532 8241 3.394606 AGACAAGTAAGGGCCTCTTTTGA 59.605 43.478 22.77 0.00 36.93 2.69
3533 8242 4.043435 AGACAAGTAAGGGCCTCTTTTGAT 59.957 41.667 22.77 12.46 36.93 2.57
3534 8243 4.740902 ACAAGTAAGGGCCTCTTTTGATT 58.259 39.130 22.77 3.53 36.93 2.57
3535 8244 4.767409 ACAAGTAAGGGCCTCTTTTGATTC 59.233 41.667 22.77 0.32 36.93 2.52
3536 8245 3.610911 AGTAAGGGCCTCTTTTGATTCG 58.389 45.455 6.46 0.00 36.93 3.34
3537 8246 1.177401 AAGGGCCTCTTTTGATTCGC 58.823 50.000 6.46 0.00 29.99 4.70
3538 8247 0.038166 AGGGCCTCTTTTGATTCGCA 59.962 50.000 0.00 0.00 0.00 5.10
3539 8248 0.453390 GGGCCTCTTTTGATTCGCAG 59.547 55.000 0.84 0.00 0.00 5.18
3540 8249 1.453155 GGCCTCTTTTGATTCGCAGA 58.547 50.000 0.00 0.00 0.00 4.26
3541 8250 1.812571 GGCCTCTTTTGATTCGCAGAA 59.187 47.619 0.00 0.00 45.90 3.02
3542 8251 2.424956 GGCCTCTTTTGATTCGCAGAAT 59.575 45.455 0.00 3.90 45.90 2.40
3543 8252 3.119352 GGCCTCTTTTGATTCGCAGAATT 60.119 43.478 0.00 0.00 45.90 2.17
3544 8253 4.488879 GCCTCTTTTGATTCGCAGAATTT 58.511 39.130 5.48 0.00 45.90 1.82
3545 8254 4.925646 GCCTCTTTTGATTCGCAGAATTTT 59.074 37.500 5.48 0.00 45.90 1.82
3546 8255 5.164022 GCCTCTTTTGATTCGCAGAATTTTG 60.164 40.000 5.48 0.00 45.90 2.44
3547 8256 6.151691 CCTCTTTTGATTCGCAGAATTTTGA 58.848 36.000 0.00 1.76 45.90 2.69
3548 8257 6.642131 CCTCTTTTGATTCGCAGAATTTTGAA 59.358 34.615 0.00 0.00 45.90 2.69
3549 8258 7.169645 CCTCTTTTGATTCGCAGAATTTTGAAA 59.830 33.333 0.00 0.00 45.90 2.69
3550 8259 8.417780 TCTTTTGATTCGCAGAATTTTGAAAA 57.582 26.923 0.00 0.00 45.90 2.29
3551 8260 8.327429 TCTTTTGATTCGCAGAATTTTGAAAAC 58.673 29.630 0.00 0.00 45.90 2.43
3552 8261 5.804449 TGATTCGCAGAATTTTGAAAACG 57.196 34.783 0.00 0.00 45.90 3.60
3553 8262 5.277825 TGATTCGCAGAATTTTGAAAACGT 58.722 33.333 0.00 0.00 45.90 3.99
3554 8263 6.431278 TGATTCGCAGAATTTTGAAAACGTA 58.569 32.000 0.00 0.00 45.90 3.57
3555 8264 6.577055 TGATTCGCAGAATTTTGAAAACGTAG 59.423 34.615 0.00 0.00 45.90 3.51
3556 8265 5.660629 TCGCAGAATTTTGAAAACGTAGA 57.339 34.783 0.00 0.00 0.00 2.59
3557 8266 6.050454 TCGCAGAATTTTGAAAACGTAGAA 57.950 33.333 0.00 0.00 0.00 2.10
3558 8267 6.487960 TCGCAGAATTTTGAAAACGTAGAAA 58.512 32.000 0.00 0.00 0.00 2.52
3559 8268 7.136119 TCGCAGAATTTTGAAAACGTAGAAAT 58.864 30.769 0.00 0.00 0.00 2.17
3560 8269 8.283992 TCGCAGAATTTTGAAAACGTAGAAATA 58.716 29.630 0.00 0.00 0.00 1.40
3561 8270 9.061610 CGCAGAATTTTGAAAACGTAGAAATAT 57.938 29.630 0.00 0.00 0.00 1.28
3587 8296 9.653287 TGAAAAGTATAGTATTGGAGTGTCAAG 57.347 33.333 0.00 0.00 0.00 3.02
3588 8297 9.654663 GAAAAGTATAGTATTGGAGTGTCAAGT 57.345 33.333 0.00 0.00 0.00 3.16
3589 8298 9.654663 AAAAGTATAGTATTGGAGTGTCAAGTC 57.345 33.333 0.00 0.00 0.00 3.01
3590 8299 7.349412 AGTATAGTATTGGAGTGTCAAGTCC 57.651 40.000 0.00 0.00 45.14 3.85
3596 8305 2.910688 GGAGTGTCAAGTCCACTTCA 57.089 50.000 0.00 0.00 44.40 3.02
3597 8306 3.194005 GGAGTGTCAAGTCCACTTCAA 57.806 47.619 0.00 0.00 44.40 2.69
3598 8307 3.744660 GGAGTGTCAAGTCCACTTCAAT 58.255 45.455 0.00 0.00 44.40 2.57
3599 8308 3.748568 GGAGTGTCAAGTCCACTTCAATC 59.251 47.826 0.00 0.00 44.40 2.67
3600 8309 3.744660 AGTGTCAAGTCCACTTCAATCC 58.255 45.455 0.00 0.00 40.14 3.01
3601 8310 3.392616 AGTGTCAAGTCCACTTCAATCCT 59.607 43.478 0.00 0.00 40.14 3.24
3602 8311 4.593206 AGTGTCAAGTCCACTTCAATCCTA 59.407 41.667 0.00 0.00 40.14 2.94
3603 8312 5.249393 AGTGTCAAGTCCACTTCAATCCTAT 59.751 40.000 0.00 0.00 40.14 2.57
3604 8313 6.440647 AGTGTCAAGTCCACTTCAATCCTATA 59.559 38.462 0.00 0.00 40.14 1.31
3605 8314 7.126421 AGTGTCAAGTCCACTTCAATCCTATAT 59.874 37.037 0.00 0.00 40.14 0.86
3606 8315 7.225538 GTGTCAAGTCCACTTCAATCCTATATG 59.774 40.741 0.00 0.00 33.11 1.78
3607 8316 7.125659 TGTCAAGTCCACTTCAATCCTATATGA 59.874 37.037 0.00 0.00 33.11 2.15
3608 8317 8.153550 GTCAAGTCCACTTCAATCCTATATGAT 58.846 37.037 0.00 0.00 33.11 2.45
3609 8318 8.717717 TCAAGTCCACTTCAATCCTATATGATT 58.282 33.333 0.00 0.00 32.89 2.57
3612 8321 8.317679 AGTCCACTTCAATCCTATATGATTAGC 58.682 37.037 3.28 0.00 33.27 3.09
3613 8322 8.097038 GTCCACTTCAATCCTATATGATTAGCA 58.903 37.037 3.28 0.00 33.27 3.49
3614 8323 8.659527 TCCACTTCAATCCTATATGATTAGCAA 58.340 33.333 3.28 0.00 33.27 3.91
3615 8324 8.944029 CCACTTCAATCCTATATGATTAGCAAG 58.056 37.037 3.28 8.12 33.27 4.01
3616 8325 8.944029 CACTTCAATCCTATATGATTAGCAAGG 58.056 37.037 3.28 0.00 33.27 3.61
3617 8326 8.884323 ACTTCAATCCTATATGATTAGCAAGGA 58.116 33.333 3.28 0.00 37.52 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.629656 CCTTGCAACCCCTTCGCAG 61.630 63.158 0.00 0.00 36.91 5.18
1 2 2.597217 CCTTGCAACCCCTTCGCA 60.597 61.111 0.00 0.00 0.00 5.10
2 3 2.142357 GAACCTTGCAACCCCTTCGC 62.142 60.000 0.00 0.00 0.00 4.70
3 4 0.821711 TGAACCTTGCAACCCCTTCG 60.822 55.000 0.00 0.00 0.00 3.79
4 5 1.341209 CTTGAACCTTGCAACCCCTTC 59.659 52.381 0.00 0.00 0.00 3.46
5 6 1.063266 TCTTGAACCTTGCAACCCCTT 60.063 47.619 0.00 0.00 0.00 3.95
6 7 0.555769 TCTTGAACCTTGCAACCCCT 59.444 50.000 0.00 0.00 0.00 4.79
7 8 0.673985 GTCTTGAACCTTGCAACCCC 59.326 55.000 0.00 0.00 0.00 4.95
8 9 1.609072 GAGTCTTGAACCTTGCAACCC 59.391 52.381 0.00 0.00 0.00 4.11
9 10 2.576615 AGAGTCTTGAACCTTGCAACC 58.423 47.619 0.00 0.00 0.00 3.77
10 11 4.639135 AAAGAGTCTTGAACCTTGCAAC 57.361 40.909 6.06 0.00 0.00 4.17
11 12 4.462483 ACAAAAGAGTCTTGAACCTTGCAA 59.538 37.500 6.06 0.00 0.00 4.08
12 13 4.016444 ACAAAAGAGTCTTGAACCTTGCA 58.984 39.130 6.06 0.00 0.00 4.08
13 14 4.096382 TCACAAAAGAGTCTTGAACCTTGC 59.904 41.667 6.06 0.00 0.00 4.01
14 15 5.731686 GCTCACAAAAGAGTCTTGAACCTTG 60.732 44.000 6.06 9.21 37.94 3.61
15 16 4.336713 GCTCACAAAAGAGTCTTGAACCTT 59.663 41.667 6.06 0.00 37.94 3.50
16 17 3.879892 GCTCACAAAAGAGTCTTGAACCT 59.120 43.478 6.06 0.00 37.94 3.50
17 18 3.003793 GGCTCACAAAAGAGTCTTGAACC 59.996 47.826 6.06 1.20 37.28 3.62
18 19 3.003793 GGGCTCACAAAAGAGTCTTGAAC 59.996 47.826 6.06 0.00 40.09 3.18
19 20 3.214328 GGGCTCACAAAAGAGTCTTGAA 58.786 45.455 6.06 0.00 40.09 2.69
20 21 2.806745 CGGGCTCACAAAAGAGTCTTGA 60.807 50.000 6.06 0.00 40.09 3.02
21 22 1.532868 CGGGCTCACAAAAGAGTCTTG 59.467 52.381 6.06 0.00 40.09 3.02
22 23 1.543429 CCGGGCTCACAAAAGAGTCTT 60.543 52.381 0.00 0.00 40.09 3.01
23 24 0.035458 CCGGGCTCACAAAAGAGTCT 59.965 55.000 0.00 0.00 40.09 3.24
24 25 0.034896 TCCGGGCTCACAAAAGAGTC 59.965 55.000 0.00 0.00 39.50 3.36
25 26 0.035458 CTCCGGGCTCACAAAAGAGT 59.965 55.000 0.00 0.00 37.94 3.24
26 27 0.035458 ACTCCGGGCTCACAAAAGAG 59.965 55.000 0.00 0.00 38.68 2.85
27 28 0.034896 GACTCCGGGCTCACAAAAGA 59.965 55.000 0.00 0.00 0.00 2.52
28 29 1.291877 CGACTCCGGGCTCACAAAAG 61.292 60.000 0.00 0.00 0.00 2.27
29 30 1.301401 CGACTCCGGGCTCACAAAA 60.301 57.895 0.00 0.00 0.00 2.44
30 31 2.342279 CGACTCCGGGCTCACAAA 59.658 61.111 0.00 0.00 0.00 2.83
40 41 4.570663 GGATGTCGCCCGACTCCG 62.571 72.222 19.88 0.00 44.80 4.63
41 42 4.222847 GGGATGTCGCCCGACTCC 62.223 72.222 19.88 20.44 44.80 3.85
50 51 2.166459 AGTGCGATATATGGGGATGTCG 59.834 50.000 0.00 0.00 41.70 4.35
51 52 3.430929 GGAGTGCGATATATGGGGATGTC 60.431 52.174 0.00 0.00 0.00 3.06
52 53 2.501723 GGAGTGCGATATATGGGGATGT 59.498 50.000 0.00 0.00 0.00 3.06
53 54 2.481969 CGGAGTGCGATATATGGGGATG 60.482 54.545 0.00 0.00 0.00 3.51
54 55 1.757118 CGGAGTGCGATATATGGGGAT 59.243 52.381 0.00 0.00 0.00 3.85
55 56 1.182667 CGGAGTGCGATATATGGGGA 58.817 55.000 0.00 0.00 0.00 4.81
56 57 1.182667 TCGGAGTGCGATATATGGGG 58.817 55.000 1.26 0.00 0.00 4.96
57 58 3.119137 TGATTCGGAGTGCGATATATGGG 60.119 47.826 7.82 0.00 0.00 4.00
58 59 4.110036 TGATTCGGAGTGCGATATATGG 57.890 45.455 7.82 0.00 0.00 2.74
59 60 6.299604 GTTTTGATTCGGAGTGCGATATATG 58.700 40.000 7.82 0.00 0.00 1.78
60 61 5.408604 GGTTTTGATTCGGAGTGCGATATAT 59.591 40.000 7.82 0.00 0.00 0.86
61 62 4.748102 GGTTTTGATTCGGAGTGCGATATA 59.252 41.667 7.82 0.00 0.00 0.86
62 63 3.560068 GGTTTTGATTCGGAGTGCGATAT 59.440 43.478 7.82 4.53 0.00 1.63
63 64 2.933906 GGTTTTGATTCGGAGTGCGATA 59.066 45.455 7.82 0.00 0.00 2.92
64 65 1.737793 GGTTTTGATTCGGAGTGCGAT 59.262 47.619 7.82 0.00 0.00 4.58
65 66 1.153353 GGTTTTGATTCGGAGTGCGA 58.847 50.000 1.26 1.26 0.00 5.10
66 67 1.128692 GAGGTTTTGATTCGGAGTGCG 59.871 52.381 0.00 0.00 0.00 5.34
67 68 2.416893 GAGAGGTTTTGATTCGGAGTGC 59.583 50.000 0.00 0.00 0.00 4.40
68 69 2.668457 CGAGAGGTTTTGATTCGGAGTG 59.332 50.000 0.00 0.00 0.00 3.51
69 70 2.960819 CGAGAGGTTTTGATTCGGAGT 58.039 47.619 0.00 0.00 0.00 3.85
84 85 2.176055 CGTCACGACCACCGAGAG 59.824 66.667 0.00 0.00 38.48 3.20
85 86 4.034258 GCGTCACGACCACCGAGA 62.034 66.667 0.00 0.00 41.76 4.04
86 87 3.553437 AAGCGTCACGACCACCGAG 62.553 63.158 0.00 0.00 41.76 4.63
87 88 3.598715 AAGCGTCACGACCACCGA 61.599 61.111 0.00 0.00 41.76 4.69
88 89 3.403057 CAAGCGTCACGACCACCG 61.403 66.667 0.00 0.00 45.44 4.94
89 90 3.712881 GCAAGCGTCACGACCACC 61.713 66.667 0.00 0.00 0.00 4.61
90 91 2.758770 TAGGCAAGCGTCACGACCAC 62.759 60.000 0.00 0.00 0.00 4.16
91 92 2.566570 TAGGCAAGCGTCACGACCA 61.567 57.895 0.00 0.00 0.00 4.02
92 93 2.092882 GTAGGCAAGCGTCACGACC 61.093 63.158 0.00 0.00 0.00 4.79
93 94 1.071567 GAGTAGGCAAGCGTCACGAC 61.072 60.000 0.00 0.00 0.00 4.34
94 95 1.211969 GAGTAGGCAAGCGTCACGA 59.788 57.895 0.00 0.00 0.00 4.35
95 96 1.080772 TGAGTAGGCAAGCGTCACG 60.081 57.895 0.00 0.00 0.00 4.35
96 97 0.038159 AGTGAGTAGGCAAGCGTCAC 60.038 55.000 7.13 7.13 38.24 3.67
97 98 0.243907 GAGTGAGTAGGCAAGCGTCA 59.756 55.000 0.00 0.00 0.00 4.35
98 99 0.798771 CGAGTGAGTAGGCAAGCGTC 60.799 60.000 0.00 0.00 0.00 5.19
99 100 1.213013 CGAGTGAGTAGGCAAGCGT 59.787 57.895 0.00 0.00 0.00 5.07
100 101 1.073216 CACGAGTGAGTAGGCAAGCG 61.073 60.000 0.00 0.00 0.00 4.68
101 102 1.355066 GCACGAGTGAGTAGGCAAGC 61.355 60.000 7.50 0.00 0.00 4.01
102 103 0.737715 GGCACGAGTGAGTAGGCAAG 60.738 60.000 7.50 0.00 0.00 4.01
103 104 1.292223 GGCACGAGTGAGTAGGCAA 59.708 57.895 7.50 0.00 0.00 4.52
104 105 2.970639 GGCACGAGTGAGTAGGCA 59.029 61.111 7.50 0.00 0.00 4.75
124 125 4.910585 CCAGGTACCCATCCGCGC 62.911 72.222 8.74 0.00 0.00 6.86
125 126 4.910585 GCCAGGTACCCATCCGCG 62.911 72.222 8.74 0.00 0.00 6.46
126 127 3.757248 CTGCCAGGTACCCATCCGC 62.757 68.421 8.74 3.81 0.00 5.54
127 128 2.032860 CTCTGCCAGGTACCCATCCG 62.033 65.000 8.74 0.00 0.00 4.18
128 129 0.691078 TCTCTGCCAGGTACCCATCC 60.691 60.000 8.74 0.00 0.00 3.51
129 130 1.204146 TTCTCTGCCAGGTACCCATC 58.796 55.000 8.74 0.00 0.00 3.51
130 131 1.771255 GATTCTCTGCCAGGTACCCAT 59.229 52.381 8.74 0.00 0.00 4.00
131 132 1.204146 GATTCTCTGCCAGGTACCCA 58.796 55.000 8.74 0.00 0.00 4.51
132 133 1.204146 TGATTCTCTGCCAGGTACCC 58.796 55.000 8.74 0.00 0.00 3.69
133 134 2.703007 AGATGATTCTCTGCCAGGTACC 59.297 50.000 2.73 2.73 0.00 3.34
134 135 3.244044 GGAGATGATTCTCTGCCAGGTAC 60.244 52.174 3.26 0.00 46.46 3.34
135 136 2.968574 GGAGATGATTCTCTGCCAGGTA 59.031 50.000 3.26 0.00 46.46 3.08
136 137 1.767681 GGAGATGATTCTCTGCCAGGT 59.232 52.381 3.26 0.00 46.46 4.00
137 138 1.767088 TGGAGATGATTCTCTGCCAGG 59.233 52.381 3.26 0.00 46.46 4.45
138 139 2.807472 GCTGGAGATGATTCTCTGCCAG 60.807 54.545 0.00 0.00 46.46 4.85
139 140 1.140452 GCTGGAGATGATTCTCTGCCA 59.860 52.381 3.26 0.00 46.46 4.92
140 141 1.417145 AGCTGGAGATGATTCTCTGCC 59.583 52.381 13.52 0.00 46.46 4.85
141 142 2.102757 TGAGCTGGAGATGATTCTCTGC 59.897 50.000 0.00 7.79 46.46 4.26
142 143 3.493002 GGTGAGCTGGAGATGATTCTCTG 60.493 52.174 0.00 0.00 46.46 3.35
143 144 2.699846 GGTGAGCTGGAGATGATTCTCT 59.300 50.000 0.00 0.00 46.46 3.10
144 145 2.545532 CGGTGAGCTGGAGATGATTCTC 60.546 54.545 0.00 0.00 46.52 2.87
145 146 1.411977 CGGTGAGCTGGAGATGATTCT 59.588 52.381 0.00 0.00 33.88 2.40
146 147 1.863267 CGGTGAGCTGGAGATGATTC 58.137 55.000 0.00 0.00 0.00 2.52
147 148 0.179062 GCGGTGAGCTGGAGATGATT 60.179 55.000 0.00 0.00 44.04 2.57
148 149 1.445095 GCGGTGAGCTGGAGATGAT 59.555 57.895 0.00 0.00 44.04 2.45
149 150 2.895680 GCGGTGAGCTGGAGATGA 59.104 61.111 0.00 0.00 44.04 2.92
159 160 1.986378 CGTCTTTAACAGAGCGGTGAG 59.014 52.381 0.00 0.00 29.34 3.51
160 161 1.610038 TCGTCTTTAACAGAGCGGTGA 59.390 47.619 0.00 0.00 29.34 4.02
161 162 1.719780 GTCGTCTTTAACAGAGCGGTG 59.280 52.381 0.00 0.00 29.34 4.94
162 163 1.338973 TGTCGTCTTTAACAGAGCGGT 59.661 47.619 0.00 0.00 29.34 5.68
163 164 2.060326 TGTCGTCTTTAACAGAGCGG 57.940 50.000 0.00 0.00 29.34 5.52
164 165 3.673338 TCATTGTCGTCTTTAACAGAGCG 59.327 43.478 0.00 0.00 29.34 5.03
165 166 4.434857 GCTCATTGTCGTCTTTAACAGAGC 60.435 45.833 0.00 0.00 36.89 4.09
166 167 4.686091 TGCTCATTGTCGTCTTTAACAGAG 59.314 41.667 0.00 0.00 29.34 3.35
167 168 4.627058 TGCTCATTGTCGTCTTTAACAGA 58.373 39.130 0.00 0.00 0.00 3.41
168 169 4.990543 TGCTCATTGTCGTCTTTAACAG 57.009 40.909 0.00 0.00 0.00 3.16
169 170 4.572795 TGTTGCTCATTGTCGTCTTTAACA 59.427 37.500 0.00 0.00 0.00 2.41
170 171 5.090652 TGTTGCTCATTGTCGTCTTTAAC 57.909 39.130 0.00 0.00 0.00 2.01
171 172 5.940192 ATGTTGCTCATTGTCGTCTTTAA 57.060 34.783 0.00 0.00 32.08 1.52
172 173 6.092122 CCTTATGTTGCTCATTGTCGTCTTTA 59.908 38.462 0.89 0.00 37.91 1.85
173 174 5.106555 CCTTATGTTGCTCATTGTCGTCTTT 60.107 40.000 0.89 0.00 37.91 2.52
174 175 4.393062 CCTTATGTTGCTCATTGTCGTCTT 59.607 41.667 0.89 0.00 37.91 3.01
175 176 3.935203 CCTTATGTTGCTCATTGTCGTCT 59.065 43.478 0.89 0.00 37.91 4.18
176 177 3.684788 ACCTTATGTTGCTCATTGTCGTC 59.315 43.478 0.89 0.00 37.91 4.20
177 178 3.436704 CACCTTATGTTGCTCATTGTCGT 59.563 43.478 0.89 0.00 37.91 4.34
178 179 3.181507 CCACCTTATGTTGCTCATTGTCG 60.182 47.826 0.89 0.00 37.91 4.35
179 180 3.428045 GCCACCTTATGTTGCTCATTGTC 60.428 47.826 0.89 0.00 37.91 3.18
180 181 2.493278 GCCACCTTATGTTGCTCATTGT 59.507 45.455 0.89 0.00 37.91 2.71
181 182 2.756760 AGCCACCTTATGTTGCTCATTG 59.243 45.455 0.89 0.00 41.89 2.82
182 183 3.091633 AGCCACCTTATGTTGCTCATT 57.908 42.857 0.89 0.00 41.89 2.57
183 184 2.814805 AGCCACCTTATGTTGCTCAT 57.185 45.000 0.00 0.00 41.89 2.90
184 185 3.054434 ACATAGCCACCTTATGTTGCTCA 60.054 43.478 0.00 0.00 41.89 4.26
185 186 3.545703 ACATAGCCACCTTATGTTGCTC 58.454 45.455 0.00 0.00 41.89 4.26
186 187 3.652057 ACATAGCCACCTTATGTTGCT 57.348 42.857 0.00 0.00 46.78 3.91
189 190 4.917385 TGACAACATAGCCACCTTATGTT 58.083 39.130 5.13 5.13 42.94 2.71
190 191 4.568072 TGACAACATAGCCACCTTATGT 57.432 40.909 0.00 0.00 36.12 2.29
191 192 6.791887 CTATGACAACATAGCCACCTTATG 57.208 41.667 0.00 0.00 45.85 1.90
202 203 2.102420 CAGTCGGCCCTATGACAACATA 59.898 50.000 10.62 0.00 37.58 2.29
203 204 1.134401 CAGTCGGCCCTATGACAACAT 60.134 52.381 10.62 0.00 37.58 2.71
204 205 0.249120 CAGTCGGCCCTATGACAACA 59.751 55.000 10.62 0.00 37.58 3.33
205 206 0.462047 CCAGTCGGCCCTATGACAAC 60.462 60.000 10.62 0.00 37.58 3.32
206 207 1.904771 CCAGTCGGCCCTATGACAA 59.095 57.895 10.62 0.00 37.58 3.18
207 208 3.628989 CCAGTCGGCCCTATGACA 58.371 61.111 10.62 0.00 37.58 3.58
219 220 1.446272 GCACGACAGTAGGCCAGTC 60.446 63.158 5.01 6.55 0.00 3.51
220 221 2.159819 CTGCACGACAGTAGGCCAGT 62.160 60.000 5.01 0.00 41.86 4.00
221 222 1.446792 CTGCACGACAGTAGGCCAG 60.447 63.158 5.01 0.00 41.86 4.85
222 223 2.656646 CTGCACGACAGTAGGCCA 59.343 61.111 5.01 0.00 41.86 5.36
269 270 0.716108 GAGATGAGTTTGCCGTGACG 59.284 55.000 0.00 0.00 0.00 4.35
270 271 1.795768 TGAGATGAGTTTGCCGTGAC 58.204 50.000 0.00 0.00 0.00 3.67
271 272 2.234661 AGATGAGATGAGTTTGCCGTGA 59.765 45.455 0.00 0.00 0.00 4.35
272 273 2.350804 CAGATGAGATGAGTTTGCCGTG 59.649 50.000 0.00 0.00 0.00 4.94
273 274 2.234661 TCAGATGAGATGAGTTTGCCGT 59.765 45.455 0.00 0.00 0.00 5.68
274 275 2.897436 TCAGATGAGATGAGTTTGCCG 58.103 47.619 0.00 0.00 0.00 5.69
275 276 4.025061 CGATTCAGATGAGATGAGTTTGCC 60.025 45.833 0.00 0.00 0.00 4.52
276 277 4.807834 TCGATTCAGATGAGATGAGTTTGC 59.192 41.667 0.00 0.00 0.00 3.68
277 278 6.924612 AGATCGATTCAGATGAGATGAGTTTG 59.075 38.462 0.00 0.00 0.00 2.93
278 279 7.053316 AGATCGATTCAGATGAGATGAGTTT 57.947 36.000 0.00 0.00 0.00 2.66
279 280 6.653526 AGATCGATTCAGATGAGATGAGTT 57.346 37.500 0.00 0.00 0.00 3.01
280 281 6.150976 GGTAGATCGATTCAGATGAGATGAGT 59.849 42.308 0.00 0.00 0.00 3.41
281 282 6.150809 TGGTAGATCGATTCAGATGAGATGAG 59.849 42.308 0.00 0.00 0.00 2.90
282 283 6.006449 TGGTAGATCGATTCAGATGAGATGA 58.994 40.000 0.00 0.00 0.00 2.92
283 284 6.264841 TGGTAGATCGATTCAGATGAGATG 57.735 41.667 0.00 0.00 0.00 2.90
284 285 6.569418 CGTTGGTAGATCGATTCAGATGAGAT 60.569 42.308 0.00 0.00 0.00 2.75
285 286 5.278022 CGTTGGTAGATCGATTCAGATGAGA 60.278 44.000 0.00 0.00 0.00 3.27
286 287 4.914504 CGTTGGTAGATCGATTCAGATGAG 59.085 45.833 0.00 0.00 0.00 2.90
287 288 4.338400 ACGTTGGTAGATCGATTCAGATGA 59.662 41.667 0.00 0.00 0.00 2.92
288 289 4.442403 CACGTTGGTAGATCGATTCAGATG 59.558 45.833 0.00 0.00 0.00 2.90
289 290 4.098044 ACACGTTGGTAGATCGATTCAGAT 59.902 41.667 0.00 0.00 0.00 2.90
290 291 3.442625 ACACGTTGGTAGATCGATTCAGA 59.557 43.478 0.00 0.00 0.00 3.27
291 292 3.547868 CACACGTTGGTAGATCGATTCAG 59.452 47.826 0.00 0.00 0.00 3.02
292 293 3.507786 CACACGTTGGTAGATCGATTCA 58.492 45.455 0.00 0.00 0.00 2.57
293 294 2.281762 GCACACGTTGGTAGATCGATTC 59.718 50.000 0.00 0.00 0.00 2.52
294 295 2.268298 GCACACGTTGGTAGATCGATT 58.732 47.619 0.00 0.00 0.00 3.34
295 296 1.470979 GGCACACGTTGGTAGATCGAT 60.471 52.381 0.00 0.00 0.00 3.59
296 297 0.108992 GGCACACGTTGGTAGATCGA 60.109 55.000 0.00 0.00 0.00 3.59
297 298 1.082117 GGGCACACGTTGGTAGATCG 61.082 60.000 0.00 0.00 0.00 3.69
298 299 0.249398 AGGGCACACGTTGGTAGATC 59.751 55.000 0.00 0.00 0.00 2.75
299 300 0.249398 GAGGGCACACGTTGGTAGAT 59.751 55.000 0.00 0.00 0.00 1.98
300 301 1.116536 TGAGGGCACACGTTGGTAGA 61.117 55.000 0.00 0.00 0.00 2.59
301 302 0.949105 GTGAGGGCACACGTTGGTAG 60.949 60.000 0.00 0.00 44.51 3.18
302 303 1.070105 GTGAGGGCACACGTTGGTA 59.930 57.895 0.00 0.00 44.51 3.25
303 304 2.203153 GTGAGGGCACACGTTGGT 60.203 61.111 0.00 0.00 44.51 3.67
319 320 2.545526 CTGTCAATGCTTTCACACGAGT 59.454 45.455 0.00 0.00 0.00 4.18
320 321 2.096069 CCTGTCAATGCTTTCACACGAG 60.096 50.000 0.00 0.00 0.00 4.18
321 322 1.872952 CCTGTCAATGCTTTCACACGA 59.127 47.619 0.00 0.00 0.00 4.35
322 323 1.872952 TCCTGTCAATGCTTTCACACG 59.127 47.619 0.00 0.00 0.00 4.49
323 324 3.755378 AGATCCTGTCAATGCTTTCACAC 59.245 43.478 0.00 0.00 0.00 3.82
324 325 3.754850 CAGATCCTGTCAATGCTTTCACA 59.245 43.478 0.00 0.00 0.00 3.58
325 326 3.427233 GCAGATCCTGTCAATGCTTTCAC 60.427 47.826 0.00 0.00 33.43 3.18
326 327 2.751259 GCAGATCCTGTCAATGCTTTCA 59.249 45.455 0.00 0.00 33.43 2.69
327 328 2.751259 TGCAGATCCTGTCAATGCTTTC 59.249 45.455 3.00 0.00 37.76 2.62
328 329 2.490903 GTGCAGATCCTGTCAATGCTTT 59.509 45.455 0.00 0.00 37.76 3.51
329 330 2.089980 GTGCAGATCCTGTCAATGCTT 58.910 47.619 0.00 0.00 37.76 3.91
330 331 1.747709 GTGCAGATCCTGTCAATGCT 58.252 50.000 0.00 0.00 37.76 3.79
331 332 0.376152 CGTGCAGATCCTGTCAATGC 59.624 55.000 0.00 0.00 37.40 3.56
332 333 1.012086 CCGTGCAGATCCTGTCAATG 58.988 55.000 0.00 0.00 33.43 2.82
333 334 0.904649 TCCGTGCAGATCCTGTCAAT 59.095 50.000 0.00 0.00 33.43 2.57
334 335 0.247460 CTCCGTGCAGATCCTGTCAA 59.753 55.000 0.00 0.00 33.43 3.18
335 336 1.893062 CTCCGTGCAGATCCTGTCA 59.107 57.895 0.00 0.00 33.43 3.58
336 337 1.520342 GCTCCGTGCAGATCCTGTC 60.520 63.158 0.00 0.00 42.31 3.51
337 338 2.581354 GCTCCGTGCAGATCCTGT 59.419 61.111 0.00 0.00 42.31 4.00
338 339 2.584418 CGCTCCGTGCAGATCCTG 60.584 66.667 0.00 0.00 43.06 3.86
339 340 2.755876 TCGCTCCGTGCAGATCCT 60.756 61.111 0.00 0.00 43.06 3.24
340 341 2.583593 GTCGCTCCGTGCAGATCC 60.584 66.667 0.00 0.00 43.06 3.36
341 342 2.951745 CGTCGCTCCGTGCAGATC 60.952 66.667 0.00 0.00 43.06 2.75
342 343 3.685214 GACGTCGCTCCGTGCAGAT 62.685 63.158 0.00 0.00 41.98 2.90
343 344 4.400109 GACGTCGCTCCGTGCAGA 62.400 66.667 0.00 0.00 41.98 4.26
346 347 4.831307 ATCGACGTCGCTCCGTGC 62.831 66.667 32.19 0.00 41.98 5.34
347 348 2.648102 GATCGACGTCGCTCCGTG 60.648 66.667 32.19 5.51 41.98 4.94
348 349 3.873883 GGATCGACGTCGCTCCGT 61.874 66.667 36.18 18.94 43.40 4.69
351 352 3.392595 AACCGGATCGACGTCGCTC 62.393 63.158 32.19 30.17 39.60 5.03
352 353 3.392595 GAACCGGATCGACGTCGCT 62.393 63.158 32.19 24.22 39.60 4.93
353 354 2.948134 GAACCGGATCGACGTCGC 60.948 66.667 32.19 19.22 39.60 5.19
354 355 2.277756 GGAACCGGATCGACGTCG 60.278 66.667 31.30 31.30 41.45 5.12
355 356 2.103736 GGGAACCGGATCGACGTC 59.896 66.667 9.46 5.18 40.86 4.34
367 368 1.216990 AGATGGACCATGAGGGGAAC 58.783 55.000 12.99 0.00 42.91 3.62
368 369 1.846439 GAAGATGGACCATGAGGGGAA 59.154 52.381 12.99 0.00 42.91 3.97
369 370 1.274358 TGAAGATGGACCATGAGGGGA 60.274 52.381 12.99 0.00 42.91 4.81
370 371 1.216064 TGAAGATGGACCATGAGGGG 58.784 55.000 12.99 0.00 42.91 4.79
371 372 3.220110 CATTGAAGATGGACCATGAGGG 58.780 50.000 12.99 0.00 44.81 4.30
372 373 3.117776 TCCATTGAAGATGGACCATGAGG 60.118 47.826 12.99 3.18 42.81 3.86
373 374 4.160642 TCCATTGAAGATGGACCATGAG 57.839 45.455 12.99 0.00 42.81 2.90
381 382 7.718314 TCACTTGATAAGATCCATTGAAGATGG 59.282 37.037 0.00 0.00 40.48 3.51
382 383 8.557864 GTCACTTGATAAGATCCATTGAAGATG 58.442 37.037 0.00 0.00 0.00 2.90
383 384 7.718753 GGTCACTTGATAAGATCCATTGAAGAT 59.281 37.037 0.00 0.00 0.00 2.40
384 385 7.050377 GGTCACTTGATAAGATCCATTGAAGA 58.950 38.462 0.00 0.00 0.00 2.87
385 386 6.261826 GGGTCACTTGATAAGATCCATTGAAG 59.738 42.308 0.00 0.00 0.00 3.02
386 387 6.122277 GGGTCACTTGATAAGATCCATTGAA 58.878 40.000 0.00 0.00 0.00 2.69
387 388 5.191522 TGGGTCACTTGATAAGATCCATTGA 59.808 40.000 0.00 0.00 0.00 2.57
388 389 5.297776 GTGGGTCACTTGATAAGATCCATTG 59.702 44.000 0.00 0.00 0.00 2.82
389 390 5.440610 GTGGGTCACTTGATAAGATCCATT 58.559 41.667 0.00 0.00 0.00 3.16
390 391 4.141390 GGTGGGTCACTTGATAAGATCCAT 60.141 45.833 0.00 0.00 34.40 3.41
391 392 3.199946 GGTGGGTCACTTGATAAGATCCA 59.800 47.826 0.00 0.00 34.40 3.41
392 393 3.433740 GGGTGGGTCACTTGATAAGATCC 60.434 52.174 0.00 0.00 34.40 3.36
393 394 3.199946 TGGGTGGGTCACTTGATAAGATC 59.800 47.826 0.00 0.00 34.40 2.75
394 395 3.054361 GTGGGTGGGTCACTTGATAAGAT 60.054 47.826 0.00 0.00 34.40 2.40
395 396 2.304761 GTGGGTGGGTCACTTGATAAGA 59.695 50.000 0.00 0.00 34.40 2.10
396 397 2.618045 GGTGGGTGGGTCACTTGATAAG 60.618 54.545 0.00 0.00 35.61 1.73
397 398 1.353022 GGTGGGTGGGTCACTTGATAA 59.647 52.381 0.00 0.00 35.61 1.75
398 399 0.988832 GGTGGGTGGGTCACTTGATA 59.011 55.000 0.00 0.00 35.61 2.15
399 400 1.065410 TGGTGGGTGGGTCACTTGAT 61.065 55.000 0.00 0.00 35.61 2.57
400 401 1.282653 TTGGTGGGTGGGTCACTTGA 61.283 55.000 0.00 0.00 35.61 3.02
401 402 0.178964 ATTGGTGGGTGGGTCACTTG 60.179 55.000 0.00 0.00 35.61 3.16
402 403 1.451449 TATTGGTGGGTGGGTCACTT 58.549 50.000 0.00 0.00 35.61 3.16
403 404 1.681229 ATATTGGTGGGTGGGTCACT 58.319 50.000 0.00 0.00 35.61 3.41
404 405 2.495669 CAAATATTGGTGGGTGGGTCAC 59.504 50.000 0.00 0.00 34.61 3.67
405 406 2.110899 ACAAATATTGGTGGGTGGGTCA 59.889 45.455 0.00 0.00 34.12 4.02
406 407 2.815158 ACAAATATTGGTGGGTGGGTC 58.185 47.619 0.00 0.00 34.12 4.46
407 408 2.903135 CAACAAATATTGGTGGGTGGGT 59.097 45.455 0.00 0.00 44.55 4.51
408 409 3.608316 CAACAAATATTGGTGGGTGGG 57.392 47.619 0.00 0.00 44.55 4.61
426 427 9.677567 GCTTCAAGTAGAAACATAAACATTCAA 57.322 29.630 0.00 0.00 35.40 2.69
427 428 8.015087 CGCTTCAAGTAGAAACATAAACATTCA 58.985 33.333 0.00 0.00 35.40 2.57
428 429 8.015658 ACGCTTCAAGTAGAAACATAAACATTC 58.984 33.333 0.00 0.00 35.40 2.67
429 430 7.871853 ACGCTTCAAGTAGAAACATAAACATT 58.128 30.769 0.00 0.00 35.40 2.71
430 431 7.435068 ACGCTTCAAGTAGAAACATAAACAT 57.565 32.000 0.00 0.00 35.40 2.71
431 432 6.854496 ACGCTTCAAGTAGAAACATAAACA 57.146 33.333 0.00 0.00 35.40 2.83
432 433 9.654417 TTTTACGCTTCAAGTAGAAACATAAAC 57.346 29.630 0.00 0.00 35.40 2.01
458 459 9.420118 TGTTGATAAATAGGGTCTGCATTATTT 57.580 29.630 0.00 0.00 32.32 1.40
459 460 8.995027 TGTTGATAAATAGGGTCTGCATTATT 57.005 30.769 0.00 0.00 0.00 1.40
460 461 8.995027 TTGTTGATAAATAGGGTCTGCATTAT 57.005 30.769 0.00 0.00 0.00 1.28
461 462 8.995027 ATTGTTGATAAATAGGGTCTGCATTA 57.005 30.769 0.00 0.00 0.00 1.90
462 463 7.902920 ATTGTTGATAAATAGGGTCTGCATT 57.097 32.000 0.00 0.00 0.00 3.56
463 464 8.220559 ACTATTGTTGATAAATAGGGTCTGCAT 58.779 33.333 7.79 0.00 40.45 3.96
464 465 7.573710 ACTATTGTTGATAAATAGGGTCTGCA 58.426 34.615 7.79 0.00 40.45 4.41
465 466 9.555727 TTACTATTGTTGATAAATAGGGTCTGC 57.444 33.333 7.79 0.00 40.45 4.26
478 479 8.204836 GGGAGTACTCATGTTACTATTGTTGAT 58.795 37.037 23.91 0.00 0.00 2.57
479 480 7.399191 AGGGAGTACTCATGTTACTATTGTTGA 59.601 37.037 23.91 0.00 0.00 3.18
480 481 7.556844 AGGGAGTACTCATGTTACTATTGTTG 58.443 38.462 23.91 0.00 0.00 3.33
481 482 7.147707 GGAGGGAGTACTCATGTTACTATTGTT 60.148 40.741 23.91 0.00 39.27 2.83
482 483 6.324254 GGAGGGAGTACTCATGTTACTATTGT 59.676 42.308 23.91 0.00 39.27 2.71
483 484 6.323996 TGGAGGGAGTACTCATGTTACTATTG 59.676 42.308 23.91 0.00 39.27 1.90
484 485 6.441222 TGGAGGGAGTACTCATGTTACTATT 58.559 40.000 23.91 0.00 39.27 1.73
485 486 6.027025 TGGAGGGAGTACTCATGTTACTAT 57.973 41.667 23.91 0.00 39.27 2.12
486 487 5.461516 TGGAGGGAGTACTCATGTTACTA 57.538 43.478 23.91 4.80 39.27 1.82
487 488 4.332683 TGGAGGGAGTACTCATGTTACT 57.667 45.455 23.91 11.24 39.27 2.24
488 489 4.896482 AGATGGAGGGAGTACTCATGTTAC 59.104 45.833 23.91 9.38 39.27 2.50
489 490 5.144159 AGATGGAGGGAGTACTCATGTTA 57.856 43.478 23.91 7.88 39.27 2.41
490 491 4.000928 AGATGGAGGGAGTACTCATGTT 57.999 45.455 23.91 6.32 39.27 2.71
491 492 3.697190 AGATGGAGGGAGTACTCATGT 57.303 47.619 23.91 7.83 39.27 3.21
492 493 6.678568 ATTTAGATGGAGGGAGTACTCATG 57.321 41.667 23.91 0.00 39.27 3.07
493 494 7.958583 ACATATTTAGATGGAGGGAGTACTCAT 59.041 37.037 23.91 12.09 39.27 2.90
494 495 7.306013 ACATATTTAGATGGAGGGAGTACTCA 58.694 38.462 23.91 4.40 39.27 3.41
495 496 7.784470 ACATATTTAGATGGAGGGAGTACTC 57.216 40.000 14.87 14.87 36.76 2.59
496 497 9.315363 CTTACATATTTAGATGGAGGGAGTACT 57.685 37.037 0.00 0.00 0.00 2.73
497 498 9.091220 ACTTACATATTTAGATGGAGGGAGTAC 57.909 37.037 0.00 0.00 0.00 2.73
498 499 9.310449 GACTTACATATTTAGATGGAGGGAGTA 57.690 37.037 0.00 0.00 0.00 2.59
499 500 7.235812 GGACTTACATATTTAGATGGAGGGAGT 59.764 40.741 0.00 0.00 0.00 3.85
500 501 7.456269 AGGACTTACATATTTAGATGGAGGGAG 59.544 40.741 0.00 0.00 0.00 4.30
501 502 7.313731 AGGACTTACATATTTAGATGGAGGGA 58.686 38.462 0.00 0.00 0.00 4.20
502 503 7.560796 AGGACTTACATATTTAGATGGAGGG 57.439 40.000 0.00 0.00 0.00 4.30
531 532 8.991026 CATGGTCAAAAGCAATCTTGAAAAATA 58.009 29.630 0.00 0.00 36.29 1.40
539 540 3.007182 CACCCATGGTCAAAAGCAATCTT 59.993 43.478 11.73 0.00 36.29 2.40
551 552 1.286248 ACTCTAACCCACCCATGGTC 58.714 55.000 11.73 0.00 45.66 4.02
556 557 7.202149 CCATATATTGTTACTCTAACCCACCCA 60.202 40.741 0.00 0.00 37.88 4.51
557 558 7.166167 CCATATATTGTTACTCTAACCCACCC 58.834 42.308 0.00 0.00 37.88 4.61
558 559 6.653740 GCCATATATTGTTACTCTAACCCACC 59.346 42.308 0.00 0.00 37.88 4.61
559 560 7.221450 TGCCATATATTGTTACTCTAACCCAC 58.779 38.462 0.00 0.00 37.88 4.61
560 561 7.381789 TGCCATATATTGTTACTCTAACCCA 57.618 36.000 0.00 0.00 37.88 4.51
570 571 8.296000 GTGTAACATGCATGCCATATATTGTTA 58.704 33.333 26.53 11.82 36.32 2.41
672 674 7.099266 TGCATTTGACCATTGGTAAGATTAG 57.901 36.000 8.70 0.00 35.25 1.73
679 681 3.505386 AGGTTGCATTTGACCATTGGTA 58.495 40.909 8.70 0.00 38.42 3.25
681 683 3.068560 CAAGGTTGCATTTGACCATTGG 58.931 45.455 7.99 0.00 38.42 3.16
687 689 5.793026 TGTTTTTCAAGGTTGCATTTGAC 57.207 34.783 7.95 0.00 33.36 3.18
693 695 5.393678 GGTCTAGTTGTTTTTCAAGGTTGCA 60.394 40.000 0.00 0.00 36.66 4.08
694 696 5.041287 GGTCTAGTTGTTTTTCAAGGTTGC 58.959 41.667 0.00 0.00 36.66 4.17
711 713 6.379703 CCTGAATCCTGATACATAGGGTCTAG 59.620 46.154 0.00 0.00 35.96 2.43
726 728 1.811778 TCCCTCCATCCTGAATCCTG 58.188 55.000 0.00 0.00 0.00 3.86
727 729 2.594536 TTCCCTCCATCCTGAATCCT 57.405 50.000 0.00 0.00 0.00 3.24
728 730 2.444766 ACATTCCCTCCATCCTGAATCC 59.555 50.000 0.00 0.00 0.00 3.01
729 731 3.872459 ACATTCCCTCCATCCTGAATC 57.128 47.619 0.00 0.00 0.00 2.52
730 732 4.728860 AGTTACATTCCCTCCATCCTGAAT 59.271 41.667 0.00 0.00 0.00 2.57
731 733 4.111577 AGTTACATTCCCTCCATCCTGAA 58.888 43.478 0.00 0.00 0.00 3.02
732 734 3.736094 AGTTACATTCCCTCCATCCTGA 58.264 45.455 0.00 0.00 0.00 3.86
733 735 4.510167 AAGTTACATTCCCTCCATCCTG 57.490 45.455 0.00 0.00 0.00 3.86
746 748 1.202830 TGGCACACCCGAAAGTTACAT 60.203 47.619 0.00 0.00 35.87 2.29
952 976 1.202580 GCCGAGCTACTGATGATGGTT 60.203 52.381 0.00 0.00 0.00 3.67
953 977 0.390860 GCCGAGCTACTGATGATGGT 59.609 55.000 0.00 0.00 0.00 3.55
954 978 0.678395 AGCCGAGCTACTGATGATGG 59.322 55.000 0.00 0.00 36.99 3.51
957 981 1.448119 CGGAGCCGAGCTACTGATGA 61.448 60.000 2.00 0.00 39.88 2.92
1335 1359 4.078516 CCGTCCTCGTTGGGGGTC 62.079 72.222 0.00 0.00 36.20 4.46
1540 1583 4.319839 GCTGGAGCTCAGTTTGTTAAAGAC 60.320 45.833 17.19 0.00 45.08 3.01
1587 1992 4.482386 CTCGTGCTAACTTTAGTACTGCA 58.518 43.478 5.39 1.24 42.07 4.41
1617 2022 5.645497 CAGTTTCTAGATGAACTCTTTGGGG 59.355 44.000 6.82 0.00 35.28 4.96
1621 2026 6.498651 TCTCCCAGTTTCTAGATGAACTCTTT 59.501 38.462 6.82 0.00 35.28 2.52
1679 2130 0.884704 GTTCGGTTCTGCTTGGCTGA 60.885 55.000 0.00 0.00 34.87 4.26
1755 2208 4.462133 TGTGAACCCAAAATTCGTCCTTA 58.538 39.130 0.00 0.00 0.00 2.69
1887 3451 5.846203 ACAACTCATTTCCACATCTTTTGG 58.154 37.500 0.00 0.00 35.18 3.28
2627 4212 1.989966 TTCTCAGATCGGCGGACGTC 61.990 60.000 7.13 7.13 44.69 4.34
2634 4219 4.320608 AGAAGAAGATTCTCAGATCGGC 57.679 45.455 0.00 0.00 36.28 5.54
2644 4229 3.194062 CCAGCGAGGAAGAAGAAGATTC 58.806 50.000 0.00 0.00 41.22 2.52
2645 4230 2.679349 GCCAGCGAGGAAGAAGAAGATT 60.679 50.000 2.12 0.00 41.22 2.40
2744 4352 1.534163 TCGACGACACAACCAGTAGAG 59.466 52.381 0.00 0.00 0.00 2.43
2798 4406 6.128007 GCAACCTTTAAGAGCAGCACTATTAA 60.128 38.462 0.00 3.32 39.65 1.40
2799 4407 5.354234 GCAACCTTTAAGAGCAGCACTATTA 59.646 40.000 0.00 0.00 30.83 0.98
2800 4408 4.156739 GCAACCTTTAAGAGCAGCACTATT 59.843 41.667 0.00 0.00 33.46 1.73
2801 4409 3.691609 GCAACCTTTAAGAGCAGCACTAT 59.308 43.478 0.00 0.00 0.00 2.12
2802 4410 3.074412 GCAACCTTTAAGAGCAGCACTA 58.926 45.455 0.00 0.00 0.00 2.74
2803 4411 1.882623 GCAACCTTTAAGAGCAGCACT 59.117 47.619 0.00 0.00 0.00 4.40
2880 4488 7.056635 ACGGAGGAAGATCAATAACATTTCAT 58.943 34.615 0.00 0.00 0.00 2.57
2885 4493 7.361457 TCTTACGGAGGAAGATCAATAACAT 57.639 36.000 0.00 0.00 0.00 2.71
2903 4511 1.201921 GCAAGCACGGACATTCTTACG 60.202 52.381 0.00 0.00 0.00 3.18
3006 6309 6.988580 CCTTCTCTGTAATGATTGCATCTACA 59.011 38.462 0.00 0.00 32.35 2.74
3007 6310 7.212976 TCCTTCTCTGTAATGATTGCATCTAC 58.787 38.462 0.00 0.00 32.35 2.59
3008 6311 7.365497 TCCTTCTCTGTAATGATTGCATCTA 57.635 36.000 0.00 0.00 32.35 1.98
3012 6315 6.885918 TCATTTCCTTCTCTGTAATGATTGCA 59.114 34.615 0.00 0.00 32.10 4.08
3022 6325 7.723172 AGTTCTTTCATTCATTTCCTTCTCTGT 59.277 33.333 0.00 0.00 0.00 3.41
3054 6357 1.135746 GTCGTGTGGAAGTCCTACTCG 60.136 57.143 13.43 13.43 36.43 4.18
3059 6362 2.930826 AATTGTCGTGTGGAAGTCCT 57.069 45.000 0.00 0.00 36.82 3.85
3061 6364 5.276395 CGATCATAATTGTCGTGTGGAAGTC 60.276 44.000 0.00 0.00 0.00 3.01
3062 6365 4.566759 CGATCATAATTGTCGTGTGGAAGT 59.433 41.667 0.00 0.00 0.00 3.01
3063 6366 4.803613 TCGATCATAATTGTCGTGTGGAAG 59.196 41.667 0.00 0.00 36.77 3.46
3067 6370 5.399596 CCTACTCGATCATAATTGTCGTGTG 59.600 44.000 15.62 9.57 40.73 3.82
3068 6371 5.298527 TCCTACTCGATCATAATTGTCGTGT 59.701 40.000 12.85 12.85 42.41 4.49
3069 6372 5.758924 TCCTACTCGATCATAATTGTCGTG 58.241 41.667 0.00 0.00 36.77 4.35
3071 6374 6.360947 CACTTCCTACTCGATCATAATTGTCG 59.639 42.308 0.00 0.00 36.75 4.35
3072 6375 6.642950 CCACTTCCTACTCGATCATAATTGTC 59.357 42.308 0.00 0.00 0.00 3.18
3073 6376 6.323996 TCCACTTCCTACTCGATCATAATTGT 59.676 38.462 0.00 0.00 0.00 2.71
3074 6377 6.749139 TCCACTTCCTACTCGATCATAATTG 58.251 40.000 0.00 0.00 0.00 2.32
3075 6378 6.978674 TCCACTTCCTACTCGATCATAATT 57.021 37.500 0.00 0.00 0.00 1.40
3076 6379 6.721668 TGATCCACTTCCTACTCGATCATAAT 59.278 38.462 0.00 0.00 33.12 1.28
3077 6380 6.068670 TGATCCACTTCCTACTCGATCATAA 58.931 40.000 0.00 0.00 33.12 1.90
3078 6381 5.631119 TGATCCACTTCCTACTCGATCATA 58.369 41.667 0.00 0.00 33.12 2.15
3079 6382 4.474394 TGATCCACTTCCTACTCGATCAT 58.526 43.478 0.00 0.00 33.12 2.45
3080 6383 3.898482 TGATCCACTTCCTACTCGATCA 58.102 45.455 0.00 0.00 35.08 2.92
3081 6384 4.279671 ACATGATCCACTTCCTACTCGATC 59.720 45.833 0.00 0.00 0.00 3.69
3082 6385 4.219115 ACATGATCCACTTCCTACTCGAT 58.781 43.478 0.00 0.00 0.00 3.59
3086 6389 3.452627 GGTGACATGATCCACTTCCTACT 59.547 47.826 0.00 0.00 33.99 2.57
3171 7875 1.062294 GAGCGACGACTAGTACCAGTG 59.938 57.143 0.00 0.00 0.00 3.66
3175 7879 1.640604 CCGAGCGACGACTAGTACC 59.359 63.158 0.00 0.00 45.77 3.34
3185 7889 3.934391 CTGACCCAACCCGAGCGAC 62.934 68.421 0.00 0.00 0.00 5.19
3210 7914 5.790495 GCTTTACTCGTCACATGTTTCATTC 59.210 40.000 0.00 0.00 0.00 2.67
3221 7925 4.563184 AGATGAATTCGCTTTACTCGTCAC 59.437 41.667 0.04 0.00 0.00 3.67
3227 7931 7.201444 CGAGTTGTTAGATGAATTCGCTTTACT 60.201 37.037 6.03 5.42 0.00 2.24
3244 7948 0.173029 TATTCCGCGGCGAGTTGTTA 59.827 50.000 25.92 0.00 0.00 2.41
3258 7962 4.756502 AGCCGTTCTAGTTCTGTTATTCC 58.243 43.478 0.00 0.00 0.00 3.01
3268 7972 1.747709 TAGAGCGAGCCGTTCTAGTT 58.252 50.000 14.03 0.00 44.78 2.24
3304 8008 4.245660 GCTTTGCTGAAATAGGGTTTTCC 58.754 43.478 0.00 0.00 35.23 3.13
3305 8009 4.881920 TGCTTTGCTGAAATAGGGTTTTC 58.118 39.130 0.00 0.00 36.38 2.29
3310 8015 2.867429 CGTTGCTTTGCTGAAATAGGG 58.133 47.619 0.00 0.00 0.00 3.53
3311 8016 2.253603 GCGTTGCTTTGCTGAAATAGG 58.746 47.619 0.00 0.00 0.00 2.57
3448 8157 0.387494 GGAGATCTAACGCTAGCCGC 60.387 60.000 9.66 0.00 41.76 6.53
3475 8184 3.470645 AGGTGTCGTATAGGAAATGCC 57.529 47.619 0.00 0.00 0.00 4.40
3490 8199 0.035176 TTAACCGGCGCTAAAGGTGT 59.965 50.000 7.64 6.18 38.44 4.16
3520 8229 0.453390 CTGCGAATCAAAAGAGGCCC 59.547 55.000 0.00 0.00 0.00 5.80
3521 8230 1.453155 TCTGCGAATCAAAAGAGGCC 58.547 50.000 0.00 0.00 0.00 5.19
3522 8231 3.772060 ATTCTGCGAATCAAAAGAGGC 57.228 42.857 0.00 0.00 0.00 4.70
3523 8232 6.151691 TCAAAATTCTGCGAATCAAAAGAGG 58.848 36.000 4.63 0.00 0.00 3.69
3524 8233 7.627585 TTCAAAATTCTGCGAATCAAAAGAG 57.372 32.000 4.63 0.00 0.00 2.85
3525 8234 8.327429 GTTTTCAAAATTCTGCGAATCAAAAGA 58.673 29.630 4.63 0.00 0.00 2.52
3526 8235 7.316336 CGTTTTCAAAATTCTGCGAATCAAAAG 59.684 33.333 4.63 1.01 0.00 2.27
3527 8236 7.116186 CGTTTTCAAAATTCTGCGAATCAAAA 58.884 30.769 4.63 5.75 0.00 2.44
3528 8237 6.254589 ACGTTTTCAAAATTCTGCGAATCAAA 59.745 30.769 4.63 1.35 0.00 2.69
3529 8238 5.746245 ACGTTTTCAAAATTCTGCGAATCAA 59.254 32.000 4.63 0.00 0.00 2.57
3530 8239 5.277825 ACGTTTTCAAAATTCTGCGAATCA 58.722 33.333 4.63 0.00 0.00 2.57
3531 8240 5.806089 ACGTTTTCAAAATTCTGCGAATC 57.194 34.783 4.63 0.00 0.00 2.52
3532 8241 6.664515 TCTACGTTTTCAAAATTCTGCGAAT 58.335 32.000 0.00 0.00 0.00 3.34
3533 8242 6.050454 TCTACGTTTTCAAAATTCTGCGAA 57.950 33.333 0.00 0.00 0.00 4.70
3534 8243 5.660629 TCTACGTTTTCAAAATTCTGCGA 57.339 34.783 0.00 0.00 0.00 5.10
3535 8244 6.726035 TTTCTACGTTTTCAAAATTCTGCG 57.274 33.333 0.00 0.00 0.00 5.18
3561 8270 9.653287 CTTGACACTCCAATACTATACTTTTCA 57.347 33.333 0.00 0.00 0.00 2.69
3562 8271 9.654663 ACTTGACACTCCAATACTATACTTTTC 57.345 33.333 0.00 0.00 0.00 2.29
3563 8272 9.654663 GACTTGACACTCCAATACTATACTTTT 57.345 33.333 0.00 0.00 0.00 2.27
3564 8273 8.258708 GGACTTGACACTCCAATACTATACTTT 58.741 37.037 0.00 0.00 0.00 2.66
3565 8274 7.399191 TGGACTTGACACTCCAATACTATACTT 59.601 37.037 0.00 0.00 33.39 2.24
3566 8275 6.895756 TGGACTTGACACTCCAATACTATACT 59.104 38.462 0.00 0.00 33.39 2.12
3567 8276 6.979238 GTGGACTTGACACTCCAATACTATAC 59.021 42.308 3.06 0.00 38.33 1.47
3568 8277 6.895756 AGTGGACTTGACACTCCAATACTATA 59.104 38.462 3.06 0.00 45.50 1.31
3569 8278 5.721960 AGTGGACTTGACACTCCAATACTAT 59.278 40.000 3.06 0.00 45.50 2.12
3570 8279 5.084519 AGTGGACTTGACACTCCAATACTA 58.915 41.667 3.06 0.00 45.50 1.82
3571 8280 3.904339 AGTGGACTTGACACTCCAATACT 59.096 43.478 3.06 0.00 45.50 2.12
3572 8281 4.273148 AGTGGACTTGACACTCCAATAC 57.727 45.455 3.06 0.00 45.50 1.89
3574 8283 5.691167 ATTGAAGTGGACTTGACACTCCAAT 60.691 40.000 4.53 4.53 44.94 3.16
3580 8289 3.744660 AGGATTGAAGTGGACTTGACAC 58.255 45.455 0.00 0.00 36.11 3.67
3581 8290 5.762179 ATAGGATTGAAGTGGACTTGACA 57.238 39.130 0.00 0.00 36.11 3.58
3582 8291 7.500992 TCATATAGGATTGAAGTGGACTTGAC 58.499 38.462 0.00 0.00 36.11 3.18
3583 8292 7.675161 TCATATAGGATTGAAGTGGACTTGA 57.325 36.000 0.00 0.00 36.11 3.02
3584 8293 8.915057 AATCATATAGGATTGAAGTGGACTTG 57.085 34.615 11.65 0.00 36.20 3.16
3586 8295 8.317679 GCTAATCATATAGGATTGAAGTGGACT 58.682 37.037 20.12 0.00 37.98 3.85
3587 8296 8.097038 TGCTAATCATATAGGATTGAAGTGGAC 58.903 37.037 20.12 2.03 37.98 4.02
3588 8297 8.206126 TGCTAATCATATAGGATTGAAGTGGA 57.794 34.615 20.12 6.12 37.98 4.02
3589 8298 8.853077 TTGCTAATCATATAGGATTGAAGTGG 57.147 34.615 20.12 0.00 37.98 4.00
3590 8299 8.944029 CCTTGCTAATCATATAGGATTGAAGTG 58.056 37.037 20.12 9.14 37.98 3.16
3591 8300 8.884323 TCCTTGCTAATCATATAGGATTGAAGT 58.116 33.333 20.12 0.00 37.98 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.