Multiple sequence alignment - TraesCS7B01G244800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G244800 chr7B 100.000 5725 0 0 1 5725 453154093 453148369 0.000000e+00 10573
1 TraesCS7B01G244800 chr7B 98.734 158 2 0 5568 5725 491171368 491171211 1.210000e-71 281
2 TraesCS7B01G244800 chr7B 79.426 209 28 7 385 591 121874523 121874718 3.600000e-27 134
3 TraesCS7B01G244800 chr7B 79.426 209 28 7 385 591 710460138 710460333 3.600000e-27 134
4 TraesCS7B01G244800 chr7D 94.062 5221 203 49 385 5576 436741005 436735863 0.000000e+00 7825
5 TraesCS7B01G244800 chr7A 93.831 4993 194 42 611 5576 486141998 486146903 0.000000e+00 7409
6 TraesCS7B01G244800 chr7A 81.643 207 24 7 385 591 540762213 540762405 5.940000e-35 159
7 TraesCS7B01G244800 chr7A 93.846 65 4 0 1214 1278 527945185 527945121 1.310000e-16 99
8 TraesCS7B01G244800 chr1D 81.220 410 73 3 3602 4009 165203033 165203440 1.540000e-85 327
9 TraesCS7B01G244800 chr1B 81.407 398 70 3 3614 4009 246769230 246768835 7.160000e-84 322
10 TraesCS7B01G244800 chr1B 95.808 167 5 2 5559 5725 139082012 139082176 9.460000e-68 268
11 TraesCS7B01G244800 chr2B 98.734 158 2 0 5568 5725 481659858 481660015 1.210000e-71 281
12 TraesCS7B01G244800 chrUn 98.726 157 2 0 5569 5725 220163436 220163592 4.370000e-71 279
13 TraesCS7B01G244800 chrUn 79.524 210 27 11 385 591 115033013 115033209 1.000000e-27 135
14 TraesCS7B01G244800 chr5A 98.137 161 2 1 5565 5725 639183794 639183635 4.370000e-71 279
15 TraesCS7B01G244800 chr5A 97.531 162 3 1 5565 5725 291132581 291132742 5.650000e-70 276
16 TraesCS7B01G244800 chr4A 98.726 157 2 0 5569 5725 692757208 692757052 4.370000e-71 279
17 TraesCS7B01G244800 chr6B 98.718 156 2 0 5570 5725 637877490 637877645 1.570000e-70 278
18 TraesCS7B01G244800 chr3A 98.113 159 3 0 5567 5725 22785803 22785645 1.570000e-70 278
19 TraesCS7B01G244800 chr3A 95.385 65 3 0 1214 1278 155431475 155431411 2.820000e-18 104
20 TraesCS7B01G244800 chr2A 89.744 117 9 3 385 499 72933432 72933317 4.620000e-31 147
21 TraesCS7B01G244800 chr6D 80.488 205 24 8 385 586 262431816 262432007 5.980000e-30 143
22 TraesCS7B01G244800 chr3D 79.524 210 29 6 385 592 286670606 286670409 2.780000e-28 137
23 TraesCS7B01G244800 chr3D 95.385 65 3 0 1214 1278 137487805 137487741 2.820000e-18 104
24 TraesCS7B01G244800 chr5D 86.325 117 13 2 385 499 136352130 136352015 2.170000e-24 124
25 TraesCS7B01G244800 chr3B 86.325 117 13 3 385 499 560875584 560875469 2.170000e-24 124
26 TraesCS7B01G244800 chr3B 95.385 65 3 0 1214 1278 200875403 200875339 2.820000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G244800 chr7B 453148369 453154093 5724 True 10573 10573 100.000 1 5725 1 chr7B.!!$R1 5724
1 TraesCS7B01G244800 chr7D 436735863 436741005 5142 True 7825 7825 94.062 385 5576 1 chr7D.!!$R1 5191
2 TraesCS7B01G244800 chr7A 486141998 486146903 4905 False 7409 7409 93.831 611 5576 1 chr7A.!!$F1 4965

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
351 352 0.035630 GCTCTTGATGACAGTGGCCT 60.036 55.0 3.32 0.00 0.0 5.19 F
362 363 0.037303 CAGTGGCCTGTTGGATGTCT 59.963 55.0 3.32 0.00 33.8 3.41 F
483 485 0.038166 TCCCCTGGCATCAAACACTC 59.962 55.0 0.00 0.00 0.0 3.51 F
1531 1539 0.170339 TCATGACTACGACGCCAGTG 59.830 55.0 7.38 0.00 0.0 3.66 F
2913 2939 2.604912 ATTCAGTCCTTTTGTCCCCC 57.395 50.0 0.00 0.00 0.0 5.40 F
4211 4239 0.541863 ATACTGGACGGCCTTTCAGG 59.458 55.0 21.08 4.21 38.8 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1362 1370 0.250252 TGCGCCAGAGATCAAACACA 60.250 50.000 4.18 0.0 0.00 3.72 R
2247 2271 2.026641 GTATGCATCATGCCCAAGTGT 58.973 47.619 7.30 0.0 44.23 3.55 R
2361 2385 4.156008 CCCTCAACACATAGGTTGTTTAGC 59.844 45.833 6.01 0.0 46.36 3.09 R
3077 3103 1.600636 GCCTACACACAGCCAGCAA 60.601 57.895 0.00 0.0 0.00 3.91 R
4580 4608 1.446907 GCTGGATTATGAGGCCATCG 58.553 55.000 5.01 0.0 34.31 3.84 R
5351 5395 0.469494 TGTGCCTCAGCTTGAAGTGA 59.531 50.000 0.00 0.0 40.80 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.540267 TTTAGGCCATGGGAAACACG 58.460 50.000 15.13 0.00 0.00 4.49
22 23 0.693622 TTAGGCCATGGGAAACACGA 59.306 50.000 15.13 0.00 0.00 4.35
23 24 0.035820 TAGGCCATGGGAAACACGAC 60.036 55.000 15.13 0.00 0.00 4.34
24 25 1.602323 GGCCATGGGAAACACGACA 60.602 57.895 15.13 0.00 0.00 4.35
25 26 0.965363 GGCCATGGGAAACACGACAT 60.965 55.000 15.13 0.00 0.00 3.06
26 27 0.171007 GCCATGGGAAACACGACATG 59.829 55.000 15.13 0.00 40.17 3.21
27 28 1.819928 CCATGGGAAACACGACATGA 58.180 50.000 2.85 0.00 42.39 3.07
28 29 2.158559 CCATGGGAAACACGACATGAA 58.841 47.619 2.85 0.00 42.39 2.57
29 30 2.162208 CCATGGGAAACACGACATGAAG 59.838 50.000 2.85 0.00 42.39 3.02
30 31 2.631160 TGGGAAACACGACATGAAGT 57.369 45.000 0.00 0.00 0.00 3.01
31 32 3.755112 TGGGAAACACGACATGAAGTA 57.245 42.857 0.00 0.00 0.00 2.24
32 33 4.074627 TGGGAAACACGACATGAAGTAA 57.925 40.909 0.00 0.00 0.00 2.24
33 34 3.810941 TGGGAAACACGACATGAAGTAAC 59.189 43.478 0.00 0.00 0.00 2.50
34 35 4.062991 GGGAAACACGACATGAAGTAACT 58.937 43.478 0.00 0.00 0.00 2.24
35 36 5.221481 TGGGAAACACGACATGAAGTAACTA 60.221 40.000 0.00 0.00 0.00 2.24
36 37 5.347907 GGGAAACACGACATGAAGTAACTAG 59.652 44.000 0.00 0.00 0.00 2.57
37 38 5.347907 GGAAACACGACATGAAGTAACTAGG 59.652 44.000 0.00 0.00 0.00 3.02
38 39 5.717078 AACACGACATGAAGTAACTAGGA 57.283 39.130 0.00 0.00 0.00 2.94
39 40 5.717078 ACACGACATGAAGTAACTAGGAA 57.283 39.130 0.00 0.00 0.00 3.36
40 41 6.282199 ACACGACATGAAGTAACTAGGAAT 57.718 37.500 0.00 0.00 0.00 3.01
41 42 6.100004 ACACGACATGAAGTAACTAGGAATG 58.900 40.000 0.00 0.00 0.00 2.67
42 43 5.005779 CACGACATGAAGTAACTAGGAATGC 59.994 44.000 0.00 0.00 0.00 3.56
43 44 4.508124 CGACATGAAGTAACTAGGAATGCC 59.492 45.833 0.00 0.00 0.00 4.40
44 45 5.428253 GACATGAAGTAACTAGGAATGCCA 58.572 41.667 0.00 0.00 36.29 4.92
45 46 5.431765 ACATGAAGTAACTAGGAATGCCAG 58.568 41.667 0.00 0.00 36.29 4.85
46 47 3.873910 TGAAGTAACTAGGAATGCCAGC 58.126 45.455 0.00 0.00 36.29 4.85
47 48 3.263170 TGAAGTAACTAGGAATGCCAGCA 59.737 43.478 0.00 0.00 36.29 4.41
48 49 4.261801 GAAGTAACTAGGAATGCCAGCAA 58.738 43.478 0.00 0.00 36.29 3.91
49 50 3.878778 AGTAACTAGGAATGCCAGCAAG 58.121 45.455 0.00 0.00 36.29 4.01
50 51 1.467920 AACTAGGAATGCCAGCAAGC 58.532 50.000 0.00 0.00 36.29 4.01
57 58 4.506039 TGCCAGCAAGCACAGAAT 57.494 50.000 0.00 0.00 38.00 2.40
58 59 2.736197 TGCCAGCAAGCACAGAATT 58.264 47.368 0.00 0.00 38.00 2.17
59 60 0.315886 TGCCAGCAAGCACAGAATTG 59.684 50.000 0.00 0.00 38.00 2.32
60 61 0.599558 GCCAGCAAGCACAGAATTGA 59.400 50.000 0.00 0.00 0.00 2.57
61 62 1.668047 GCCAGCAAGCACAGAATTGAC 60.668 52.381 0.00 0.00 0.00 3.18
62 63 1.400629 CCAGCAAGCACAGAATTGACG 60.401 52.381 0.00 0.00 0.00 4.35
63 64 1.532437 CAGCAAGCACAGAATTGACGA 59.468 47.619 0.00 0.00 0.00 4.20
64 65 1.802960 AGCAAGCACAGAATTGACGAG 59.197 47.619 0.00 0.00 0.00 4.18
65 66 1.135859 GCAAGCACAGAATTGACGAGG 60.136 52.381 0.00 0.00 0.00 4.63
66 67 1.466167 CAAGCACAGAATTGACGAGGG 59.534 52.381 0.00 0.00 0.00 4.30
67 68 0.687354 AGCACAGAATTGACGAGGGT 59.313 50.000 0.00 0.00 0.00 4.34
68 69 1.899814 AGCACAGAATTGACGAGGGTA 59.100 47.619 0.00 0.00 0.00 3.69
69 70 2.301870 AGCACAGAATTGACGAGGGTAA 59.698 45.455 0.00 0.00 0.00 2.85
70 71 2.673368 GCACAGAATTGACGAGGGTAAG 59.327 50.000 0.00 0.00 0.00 2.34
71 72 3.262420 CACAGAATTGACGAGGGTAAGG 58.738 50.000 0.00 0.00 0.00 2.69
72 73 2.904434 ACAGAATTGACGAGGGTAAGGT 59.096 45.455 0.00 0.00 0.00 3.50
73 74 3.262420 CAGAATTGACGAGGGTAAGGTG 58.738 50.000 0.00 0.00 0.00 4.00
74 75 2.007608 GAATTGACGAGGGTAAGGTGC 58.992 52.381 0.00 0.00 0.00 5.01
75 76 0.252197 ATTGACGAGGGTAAGGTGCC 59.748 55.000 0.00 0.00 0.00 5.01
76 77 1.833787 TTGACGAGGGTAAGGTGCCC 61.834 60.000 0.00 0.00 46.43 5.36
96 97 3.821748 CCCCCAAAGATAGGAAAGTAGC 58.178 50.000 0.00 0.00 0.00 3.58
97 98 3.467803 CCCCAAAGATAGGAAAGTAGCG 58.532 50.000 0.00 0.00 0.00 4.26
98 99 3.134081 CCCCAAAGATAGGAAAGTAGCGA 59.866 47.826 0.00 0.00 0.00 4.93
99 100 4.372656 CCCAAAGATAGGAAAGTAGCGAG 58.627 47.826 0.00 0.00 0.00 5.03
100 101 3.804873 CCAAAGATAGGAAAGTAGCGAGC 59.195 47.826 0.00 0.00 0.00 5.03
101 102 3.357166 AAGATAGGAAAGTAGCGAGCG 57.643 47.619 0.00 0.00 0.00 5.03
102 103 2.573369 AGATAGGAAAGTAGCGAGCGA 58.427 47.619 0.00 0.00 0.00 4.93
103 104 2.550606 AGATAGGAAAGTAGCGAGCGAG 59.449 50.000 0.00 0.00 0.00 5.03
104 105 0.381089 TAGGAAAGTAGCGAGCGAGC 59.619 55.000 0.00 0.00 37.41 5.03
105 106 1.878975 GGAAAGTAGCGAGCGAGCC 60.879 63.158 2.87 0.00 38.01 4.70
106 107 1.878975 GAAAGTAGCGAGCGAGCCC 60.879 63.158 2.87 0.00 38.01 5.19
107 108 3.701604 AAAGTAGCGAGCGAGCCCG 62.702 63.158 2.87 0.00 38.01 6.13
109 110 4.615834 GTAGCGAGCGAGCCCGAG 62.616 72.222 2.58 0.00 38.22 4.63
110 111 4.851179 TAGCGAGCGAGCCCGAGA 62.851 66.667 2.58 0.00 38.22 4.04
122 123 2.829003 CCGAGAGCCTGCGGTCTA 60.829 66.667 0.00 0.00 46.79 2.59
123 124 2.409651 CGAGAGCCTGCGGTCTAC 59.590 66.667 0.00 0.00 46.79 2.59
124 125 2.809010 GAGAGCCTGCGGTCTACC 59.191 66.667 0.00 0.00 46.79 3.18
125 126 1.755008 GAGAGCCTGCGGTCTACCT 60.755 63.158 0.00 0.00 46.79 3.08
126 127 1.730451 GAGAGCCTGCGGTCTACCTC 61.730 65.000 0.00 0.00 46.79 3.85
127 128 3.127352 GAGCCTGCGGTCTACCTCG 62.127 68.421 0.00 0.00 33.54 4.63
128 129 3.450115 GCCTGCGGTCTACCTCGT 61.450 66.667 0.00 0.00 0.00 4.18
129 130 2.490217 CCTGCGGTCTACCTCGTG 59.510 66.667 0.00 0.00 0.00 4.35
130 131 2.490217 CTGCGGTCTACCTCGTGG 59.510 66.667 0.99 0.99 39.83 4.94
131 132 2.034532 TGCGGTCTACCTCGTGGA 59.965 61.111 11.17 0.00 37.04 4.02
132 133 1.379443 TGCGGTCTACCTCGTGGAT 60.379 57.895 11.17 0.00 37.04 3.41
133 134 1.065928 GCGGTCTACCTCGTGGATG 59.934 63.158 11.17 2.49 37.04 3.51
134 135 1.381928 GCGGTCTACCTCGTGGATGA 61.382 60.000 11.17 4.92 37.04 2.92
135 136 0.381089 CGGTCTACCTCGTGGATGAC 59.619 60.000 11.17 15.73 37.88 3.06
136 137 1.765230 GGTCTACCTCGTGGATGACT 58.235 55.000 22.25 2.39 38.28 3.41
137 138 1.405821 GGTCTACCTCGTGGATGACTG 59.594 57.143 22.25 5.36 38.28 3.51
138 139 1.405821 GTCTACCTCGTGGATGACTGG 59.594 57.143 11.17 0.00 36.75 4.00
139 140 0.103208 CTACCTCGTGGATGACTGGC 59.897 60.000 11.17 0.00 37.04 4.85
140 141 0.613572 TACCTCGTGGATGACTGGCA 60.614 55.000 11.17 0.00 37.04 4.92
141 142 1.296392 CCTCGTGGATGACTGGCAA 59.704 57.895 0.00 0.00 34.57 4.52
142 143 1.021390 CCTCGTGGATGACTGGCAAC 61.021 60.000 0.00 0.00 34.57 4.17
143 144 3.644700 CCTCGTGGATGACTGGCAACA 62.645 57.143 0.00 0.00 39.52 3.33
156 157 2.818130 GGCAACAACATTCCATGTGT 57.182 45.000 0.00 0.00 44.07 3.72
157 158 3.932545 GGCAACAACATTCCATGTGTA 57.067 42.857 0.00 0.00 44.07 2.90
158 159 4.250116 GGCAACAACATTCCATGTGTAA 57.750 40.909 0.00 0.00 44.07 2.41
159 160 4.819769 GGCAACAACATTCCATGTGTAAT 58.180 39.130 0.00 0.00 44.07 1.89
160 161 5.237048 GGCAACAACATTCCATGTGTAATT 58.763 37.500 0.00 0.00 44.07 1.40
161 162 5.700373 GGCAACAACATTCCATGTGTAATTT 59.300 36.000 0.00 0.00 44.07 1.82
162 163 6.204495 GGCAACAACATTCCATGTGTAATTTT 59.796 34.615 0.00 0.00 44.07 1.82
163 164 7.070798 GCAACAACATTCCATGTGTAATTTTG 58.929 34.615 8.72 8.72 44.07 2.44
164 165 7.254727 GCAACAACATTCCATGTGTAATTTTGT 60.255 33.333 9.58 9.58 44.07 2.83
165 166 7.712264 ACAACATTCCATGTGTAATTTTGTG 57.288 32.000 12.60 0.37 44.07 3.33
166 167 7.271511 ACAACATTCCATGTGTAATTTTGTGT 58.728 30.769 12.60 0.83 44.07 3.72
167 168 7.768120 ACAACATTCCATGTGTAATTTTGTGTT 59.232 29.630 12.60 0.00 44.07 3.32
168 169 9.254133 CAACATTCCATGTGTAATTTTGTGTTA 57.746 29.630 0.00 0.00 44.07 2.41
169 170 9.474920 AACATTCCATGTGTAATTTTGTGTTAG 57.525 29.630 0.00 0.00 44.07 2.34
170 171 8.087750 ACATTCCATGTGTAATTTTGTGTTAGG 58.912 33.333 0.00 0.00 43.01 2.69
171 172 6.582677 TCCATGTGTAATTTTGTGTTAGGG 57.417 37.500 0.00 0.00 0.00 3.53
172 173 6.307776 TCCATGTGTAATTTTGTGTTAGGGA 58.692 36.000 0.00 0.00 0.00 4.20
173 174 6.207810 TCCATGTGTAATTTTGTGTTAGGGAC 59.792 38.462 0.00 0.00 0.00 4.46
174 175 6.015856 CCATGTGTAATTTTGTGTTAGGGACA 60.016 38.462 0.00 0.00 35.42 4.02
175 176 6.627395 TGTGTAATTTTGTGTTAGGGACAG 57.373 37.500 0.00 0.00 39.39 3.51
176 177 5.533154 TGTGTAATTTTGTGTTAGGGACAGG 59.467 40.000 0.00 0.00 39.39 4.00
177 178 5.048294 GTGTAATTTTGTGTTAGGGACAGGG 60.048 44.000 0.00 0.00 39.39 4.45
178 179 2.668144 TTTTGTGTTAGGGACAGGGG 57.332 50.000 0.00 0.00 39.39 4.79
179 180 0.111639 TTTGTGTTAGGGACAGGGGC 59.888 55.000 0.00 0.00 39.39 5.80
180 181 1.063070 TTGTGTTAGGGACAGGGGCA 61.063 55.000 0.00 0.00 39.39 5.36
181 182 1.299976 GTGTTAGGGACAGGGGCAG 59.700 63.158 0.00 0.00 39.39 4.85
182 183 2.272471 GTTAGGGACAGGGGCAGC 59.728 66.667 0.00 0.00 0.00 5.25
183 184 3.015145 TTAGGGACAGGGGCAGCC 61.015 66.667 1.26 1.26 0.00 4.85
188 189 4.864334 GACAGGGGCAGCCCGATG 62.864 72.222 25.18 25.64 46.66 3.84
195 196 4.564116 GCAGCCCGATGCATGTGC 62.564 66.667 2.46 3.46 45.77 4.57
207 208 2.288961 GCATGTGCATGAAAAGGAGG 57.711 50.000 15.53 0.00 41.20 4.30
208 209 1.820519 GCATGTGCATGAAAAGGAGGA 59.179 47.619 15.53 0.00 41.20 3.71
209 210 2.429610 GCATGTGCATGAAAAGGAGGAT 59.570 45.455 15.53 0.00 41.20 3.24
210 211 3.633525 GCATGTGCATGAAAAGGAGGATA 59.366 43.478 15.53 0.00 41.20 2.59
211 212 4.498682 GCATGTGCATGAAAAGGAGGATAC 60.499 45.833 15.53 0.00 41.20 2.24
212 213 3.270027 TGTGCATGAAAAGGAGGATACG 58.730 45.455 0.00 0.00 46.39 3.06
213 214 2.614057 GTGCATGAAAAGGAGGATACGG 59.386 50.000 0.00 0.00 46.39 4.02
214 215 2.222027 GCATGAAAAGGAGGATACGGG 58.778 52.381 0.00 0.00 46.39 5.28
215 216 2.851195 CATGAAAAGGAGGATACGGGG 58.149 52.381 0.00 0.00 46.39 5.73
216 217 0.544697 TGAAAAGGAGGATACGGGGC 59.455 55.000 0.00 0.00 46.39 5.80
217 218 0.544697 GAAAAGGAGGATACGGGGCA 59.455 55.000 0.00 0.00 46.39 5.36
218 219 0.546598 AAAAGGAGGATACGGGGCAG 59.453 55.000 0.00 0.00 46.39 4.85
219 220 1.984288 AAAGGAGGATACGGGGCAGC 61.984 60.000 0.00 0.00 46.39 5.25
220 221 3.942439 GGAGGATACGGGGCAGCC 61.942 72.222 1.26 1.26 46.39 4.85
221 222 4.301027 GAGGATACGGGGCAGCCG 62.301 72.222 5.00 0.36 46.39 5.52
222 223 4.853142 AGGATACGGGGCAGCCGA 62.853 66.667 5.00 0.00 46.39 5.54
223 224 3.857038 GGATACGGGGCAGCCGAA 61.857 66.667 5.00 0.00 34.52 4.30
224 225 2.588034 GATACGGGGCAGCCGAAC 60.588 66.667 5.00 0.00 34.52 3.95
225 226 3.379865 GATACGGGGCAGCCGAACA 62.380 63.158 5.00 0.00 34.52 3.18
226 227 3.385749 ATACGGGGCAGCCGAACAG 62.386 63.158 5.00 0.00 34.52 3.16
229 230 3.365265 GGGGCAGCCGAACAGTTG 61.365 66.667 5.00 0.00 0.00 3.16
230 231 2.281484 GGGCAGCCGAACAGTTGA 60.281 61.111 5.00 0.00 0.00 3.18
231 232 2.328099 GGGCAGCCGAACAGTTGAG 61.328 63.158 5.00 0.00 0.00 3.02
232 233 2.558313 GCAGCCGAACAGTTGAGC 59.442 61.111 0.00 0.00 0.00 4.26
233 234 2.856032 CAGCCGAACAGTTGAGCG 59.144 61.111 0.00 0.00 0.00 5.03
234 235 1.664649 CAGCCGAACAGTTGAGCGA 60.665 57.895 0.00 0.00 0.00 4.93
235 236 1.016130 CAGCCGAACAGTTGAGCGAT 61.016 55.000 0.00 0.00 0.00 4.58
236 237 0.737715 AGCCGAACAGTTGAGCGATC 60.738 55.000 0.00 0.00 0.00 3.69
237 238 0.737715 GCCGAACAGTTGAGCGATCT 60.738 55.000 0.90 0.00 0.00 2.75
238 239 1.714794 CCGAACAGTTGAGCGATCTT 58.285 50.000 0.90 0.00 0.00 2.40
239 240 2.876091 CCGAACAGTTGAGCGATCTTA 58.124 47.619 0.90 0.00 0.00 2.10
240 241 2.854777 CCGAACAGTTGAGCGATCTTAG 59.145 50.000 0.90 0.00 0.00 2.18
241 242 3.427638 CCGAACAGTTGAGCGATCTTAGA 60.428 47.826 0.90 0.00 0.00 2.10
242 243 4.166523 CGAACAGTTGAGCGATCTTAGAA 58.833 43.478 0.90 0.00 0.00 2.10
243 244 4.264145 CGAACAGTTGAGCGATCTTAGAAG 59.736 45.833 0.90 0.00 0.00 2.85
244 245 3.516615 ACAGTTGAGCGATCTTAGAAGC 58.483 45.455 0.90 5.19 0.00 3.86
245 246 2.863137 CAGTTGAGCGATCTTAGAAGCC 59.137 50.000 0.90 3.22 0.00 4.35
246 247 2.497675 AGTTGAGCGATCTTAGAAGCCA 59.502 45.455 0.90 5.27 0.00 4.75
247 248 2.586258 TGAGCGATCTTAGAAGCCAC 57.414 50.000 0.90 5.57 0.00 5.01
248 249 1.137086 TGAGCGATCTTAGAAGCCACC 59.863 52.381 0.90 1.81 0.00 4.61
249 250 0.103208 AGCGATCTTAGAAGCCACCG 59.897 55.000 8.91 0.00 0.00 4.94
250 251 1.491505 GCGATCTTAGAAGCCACCGC 61.492 60.000 0.00 0.00 34.71 5.68
259 260 4.101448 AGCCACCGCTGGATCCAC 62.101 66.667 11.44 7.30 46.19 4.02
265 266 2.105128 CGCTGGATCCACGGAGAC 59.895 66.667 21.74 6.13 0.00 3.36
266 267 2.710902 CGCTGGATCCACGGAGACA 61.711 63.158 21.74 0.00 0.00 3.41
267 268 1.142748 GCTGGATCCACGGAGACAG 59.857 63.158 11.44 12.92 35.95 3.51
268 269 1.819229 CTGGATCCACGGAGACAGG 59.181 63.158 11.44 0.00 32.07 4.00
269 270 2.303549 CTGGATCCACGGAGACAGGC 62.304 65.000 11.44 0.00 32.07 4.85
270 271 2.359169 GGATCCACGGAGACAGGCA 61.359 63.158 6.95 0.00 0.00 4.75
271 272 1.153549 GATCCACGGAGACAGGCAC 60.154 63.158 0.00 0.00 0.00 5.01
272 273 2.579684 GATCCACGGAGACAGGCACC 62.580 65.000 0.00 0.00 0.00 5.01
273 274 3.625897 CCACGGAGACAGGCACCA 61.626 66.667 0.00 0.00 0.00 4.17
274 275 2.425592 CACGGAGACAGGCACCAA 59.574 61.111 0.00 0.00 0.00 3.67
275 276 1.961277 CACGGAGACAGGCACCAAC 60.961 63.158 0.00 0.00 0.00 3.77
276 277 2.738521 CGGAGACAGGCACCAACG 60.739 66.667 0.00 0.00 0.00 4.10
277 278 2.426023 GGAGACAGGCACCAACGT 59.574 61.111 0.00 0.00 0.00 3.99
278 279 1.669440 GGAGACAGGCACCAACGTA 59.331 57.895 0.00 0.00 0.00 3.57
279 280 0.669625 GGAGACAGGCACCAACGTAC 60.670 60.000 0.00 0.00 0.00 3.67
280 281 0.317479 GAGACAGGCACCAACGTACT 59.683 55.000 0.00 0.00 0.00 2.73
281 282 0.756903 AGACAGGCACCAACGTACTT 59.243 50.000 0.00 0.00 0.00 2.24
282 283 1.140252 AGACAGGCACCAACGTACTTT 59.860 47.619 0.00 0.00 0.00 2.66
283 284 1.944709 GACAGGCACCAACGTACTTTT 59.055 47.619 0.00 0.00 0.00 2.27
284 285 1.673920 ACAGGCACCAACGTACTTTTG 59.326 47.619 0.00 0.00 0.00 2.44
285 286 1.673920 CAGGCACCAACGTACTTTTGT 59.326 47.619 0.00 0.00 0.00 2.83
286 287 1.673920 AGGCACCAACGTACTTTTGTG 59.326 47.619 10.83 10.83 0.00 3.33
287 288 1.268845 GGCACCAACGTACTTTTGTGG 60.269 52.381 15.31 3.34 0.00 4.17
288 289 1.402613 GCACCAACGTACTTTTGTGGT 59.597 47.619 15.31 0.00 0.00 4.16
289 290 2.613133 GCACCAACGTACTTTTGTGGTA 59.387 45.455 15.31 0.00 0.00 3.25
290 291 3.065095 GCACCAACGTACTTTTGTGGTAA 59.935 43.478 15.31 0.00 0.00 2.85
291 292 4.261280 GCACCAACGTACTTTTGTGGTAAT 60.261 41.667 15.31 0.00 0.00 1.89
292 293 5.733937 GCACCAACGTACTTTTGTGGTAATT 60.734 40.000 15.31 0.00 0.00 1.40
293 294 5.683743 CACCAACGTACTTTTGTGGTAATTG 59.316 40.000 5.55 0.00 0.00 2.32
294 295 5.589452 ACCAACGTACTTTTGTGGTAATTGA 59.411 36.000 4.03 0.00 0.00 2.57
295 296 6.263617 ACCAACGTACTTTTGTGGTAATTGAT 59.736 34.615 4.03 0.00 0.00 2.57
296 297 6.580791 CCAACGTACTTTTGTGGTAATTGATG 59.419 38.462 0.00 0.00 0.00 3.07
297 298 6.249035 ACGTACTTTTGTGGTAATTGATGG 57.751 37.500 0.00 0.00 0.00 3.51
298 299 5.766174 ACGTACTTTTGTGGTAATTGATGGT 59.234 36.000 0.00 0.00 0.00 3.55
299 300 6.072893 ACGTACTTTTGTGGTAATTGATGGTC 60.073 38.462 0.00 0.00 0.00 4.02
300 301 6.072948 CGTACTTTTGTGGTAATTGATGGTCA 60.073 38.462 0.00 0.00 0.00 4.02
301 302 6.331369 ACTTTTGTGGTAATTGATGGTCAG 57.669 37.500 0.00 0.00 0.00 3.51
302 303 6.068010 ACTTTTGTGGTAATTGATGGTCAGA 58.932 36.000 0.00 0.00 0.00 3.27
303 304 5.957842 TTTGTGGTAATTGATGGTCAGAC 57.042 39.130 0.00 0.00 0.00 3.51
304 305 3.595173 TGTGGTAATTGATGGTCAGACG 58.405 45.455 0.00 0.00 0.00 4.18
305 306 3.007506 TGTGGTAATTGATGGTCAGACGT 59.992 43.478 0.00 0.00 0.00 4.34
306 307 3.370978 GTGGTAATTGATGGTCAGACGTG 59.629 47.826 0.00 0.00 0.00 4.49
307 308 3.259625 TGGTAATTGATGGTCAGACGTGA 59.740 43.478 0.00 0.00 0.00 4.35
308 309 3.865745 GGTAATTGATGGTCAGACGTGAG 59.134 47.826 0.00 0.00 31.53 3.51
309 310 3.961480 AATTGATGGTCAGACGTGAGA 57.039 42.857 0.00 0.00 31.53 3.27
310 311 3.961480 ATTGATGGTCAGACGTGAGAA 57.039 42.857 0.00 0.00 31.53 2.87
311 312 3.744238 TTGATGGTCAGACGTGAGAAA 57.256 42.857 0.00 0.00 31.53 2.52
312 313 3.961480 TGATGGTCAGACGTGAGAAAT 57.039 42.857 0.00 0.00 31.53 2.17
313 314 3.849911 TGATGGTCAGACGTGAGAAATC 58.150 45.455 0.00 0.00 31.53 2.17
314 315 2.743636 TGGTCAGACGTGAGAAATCC 57.256 50.000 0.00 0.00 31.53 3.01
315 316 1.067846 TGGTCAGACGTGAGAAATCCG 60.068 52.381 0.00 0.00 31.53 4.18
316 317 1.201647 GGTCAGACGTGAGAAATCCGA 59.798 52.381 0.00 0.00 31.53 4.55
317 318 2.520979 GTCAGACGTGAGAAATCCGAG 58.479 52.381 0.00 0.00 31.53 4.63
318 319 2.161808 GTCAGACGTGAGAAATCCGAGA 59.838 50.000 0.00 0.00 31.53 4.04
319 320 2.817844 TCAGACGTGAGAAATCCGAGAA 59.182 45.455 0.00 0.00 0.00 2.87
320 321 3.119814 TCAGACGTGAGAAATCCGAGAAG 60.120 47.826 0.00 0.00 0.00 2.85
321 322 2.164624 AGACGTGAGAAATCCGAGAAGG 59.835 50.000 0.00 0.00 42.97 3.46
332 333 3.808466 TCCGAGAAGGATGTGAGAATG 57.192 47.619 0.00 0.00 45.98 2.67
333 334 2.159043 TCCGAGAAGGATGTGAGAATGC 60.159 50.000 0.00 0.00 45.98 3.56
334 335 2.158986 CCGAGAAGGATGTGAGAATGCT 60.159 50.000 0.00 0.00 45.00 3.79
335 336 3.122297 CGAGAAGGATGTGAGAATGCTC 58.878 50.000 0.00 0.00 41.67 4.26
336 337 3.181477 CGAGAAGGATGTGAGAATGCTCT 60.181 47.826 1.43 0.00 41.84 4.09
337 338 4.680172 CGAGAAGGATGTGAGAATGCTCTT 60.680 45.833 1.43 0.00 41.84 2.85
338 339 4.515361 AGAAGGATGTGAGAATGCTCTTG 58.485 43.478 1.43 0.00 41.84 3.02
339 340 4.224594 AGAAGGATGTGAGAATGCTCTTGA 59.775 41.667 1.43 0.00 41.84 3.02
340 341 4.774660 AGGATGTGAGAATGCTCTTGAT 57.225 40.909 1.43 0.00 41.84 2.57
341 342 4.452825 AGGATGTGAGAATGCTCTTGATG 58.547 43.478 1.43 0.00 41.84 3.07
342 343 4.163649 AGGATGTGAGAATGCTCTTGATGA 59.836 41.667 1.43 0.00 41.84 2.92
343 344 4.272991 GGATGTGAGAATGCTCTTGATGAC 59.727 45.833 1.43 0.00 41.84 3.06
344 345 4.276058 TGTGAGAATGCTCTTGATGACA 57.724 40.909 1.43 0.00 41.84 3.58
345 346 4.251268 TGTGAGAATGCTCTTGATGACAG 58.749 43.478 1.43 0.00 41.84 3.51
346 347 4.252073 GTGAGAATGCTCTTGATGACAGT 58.748 43.478 1.43 0.00 41.84 3.55
347 348 4.093115 GTGAGAATGCTCTTGATGACAGTG 59.907 45.833 1.43 0.00 41.84 3.66
348 349 3.607741 AGAATGCTCTTGATGACAGTGG 58.392 45.455 0.00 0.00 0.00 4.00
349 350 1.747709 ATGCTCTTGATGACAGTGGC 58.252 50.000 0.00 0.00 0.00 5.01
350 351 0.321919 TGCTCTTGATGACAGTGGCC 60.322 55.000 0.00 0.00 0.00 5.36
351 352 0.035630 GCTCTTGATGACAGTGGCCT 60.036 55.000 3.32 0.00 0.00 5.19
352 353 1.735386 CTCTTGATGACAGTGGCCTG 58.265 55.000 3.32 0.00 44.68 4.85
360 361 4.828409 CAGTGGCCTGTTGGATGT 57.172 55.556 3.32 0.00 33.80 3.06
361 362 2.559785 CAGTGGCCTGTTGGATGTC 58.440 57.895 3.32 0.00 33.80 3.06
362 363 0.037303 CAGTGGCCTGTTGGATGTCT 59.963 55.000 3.32 0.00 33.80 3.41
363 364 0.326264 AGTGGCCTGTTGGATGTCTC 59.674 55.000 3.32 0.00 34.57 3.36
364 365 0.678048 GTGGCCTGTTGGATGTCTCC 60.678 60.000 3.32 0.00 42.45 3.71
365 366 0.842030 TGGCCTGTTGGATGTCTCCT 60.842 55.000 3.32 0.00 42.59 3.69
366 367 0.107459 GGCCTGTTGGATGTCTCCTC 60.107 60.000 0.00 0.00 42.59 3.71
367 368 0.908198 GCCTGTTGGATGTCTCCTCT 59.092 55.000 0.00 0.00 42.59 3.69
368 369 1.406614 GCCTGTTGGATGTCTCCTCTG 60.407 57.143 0.00 0.00 42.59 3.35
369 370 2.182827 CCTGTTGGATGTCTCCTCTGA 58.817 52.381 0.00 0.00 42.59 3.27
370 371 2.093764 CCTGTTGGATGTCTCCTCTGAC 60.094 54.545 0.00 0.00 42.59 3.51
378 379 2.250924 TGTCTCCTCTGACAATGAGCA 58.749 47.619 0.00 0.00 43.08 4.26
379 380 2.634453 TGTCTCCTCTGACAATGAGCAA 59.366 45.455 0.00 0.00 43.08 3.91
380 381 3.071457 TGTCTCCTCTGACAATGAGCAAA 59.929 43.478 0.00 0.00 43.08 3.68
381 382 3.683822 GTCTCCTCTGACAATGAGCAAAG 59.316 47.826 0.00 0.00 36.97 2.77
382 383 3.326006 TCTCCTCTGACAATGAGCAAAGT 59.674 43.478 0.00 0.00 0.00 2.66
383 384 4.528206 TCTCCTCTGACAATGAGCAAAGTA 59.472 41.667 0.00 0.00 0.00 2.24
436 437 8.463930 TTTCACAGAAAAATCTAACATCCACT 57.536 30.769 0.00 0.00 0.00 4.00
437 438 8.463930 TTCACAGAAAAATCTAACATCCACTT 57.536 30.769 0.00 0.00 0.00 3.16
438 439 8.099364 TCACAGAAAAATCTAACATCCACTTC 57.901 34.615 0.00 0.00 0.00 3.01
440 441 8.352201 CACAGAAAAATCTAACATCCACTTCAA 58.648 33.333 0.00 0.00 0.00 2.69
441 442 9.082313 ACAGAAAAATCTAACATCCACTTCAAT 57.918 29.630 0.00 0.00 0.00 2.57
442 443 9.565213 CAGAAAAATCTAACATCCACTTCAATC 57.435 33.333 0.00 0.00 0.00 2.67
443 444 9.525826 AGAAAAATCTAACATCCACTTCAATCT 57.474 29.630 0.00 0.00 0.00 2.40
444 445 9.780413 GAAAAATCTAACATCCACTTCAATCTC 57.220 33.333 0.00 0.00 0.00 2.75
468 469 8.725405 TCTTTTTACAATTTCTTTGTTTCCCC 57.275 30.769 0.00 0.00 46.51 4.81
483 485 0.038166 TCCCCTGGCATCAAACACTC 59.962 55.000 0.00 0.00 0.00 3.51
493 495 5.039333 GGCATCAAACACTCATTGCTAATC 58.961 41.667 0.00 0.00 0.00 1.75
503 505 9.935241 AACACTCATTGCTAATCCTATATACTG 57.065 33.333 0.00 0.00 0.00 2.74
504 506 9.094578 ACACTCATTGCTAATCCTATATACTGT 57.905 33.333 0.00 0.00 0.00 3.55
541 543 6.759272 TGGACATACCACTCTAATTCTATGC 58.241 40.000 0.00 0.00 44.64 3.14
587 589 1.941325 ATCCGGCGAATCAAAGAGAC 58.059 50.000 9.30 0.00 0.00 3.36
599 601 5.923733 ATCAAAGAGACCCTGTACAGTAG 57.076 43.478 21.18 14.30 0.00 2.57
600 602 4.737578 TCAAAGAGACCCTGTACAGTAGT 58.262 43.478 21.18 17.31 0.00 2.73
601 603 5.884322 TCAAAGAGACCCTGTACAGTAGTA 58.116 41.667 21.18 0.00 0.00 1.82
603 605 6.377429 TCAAAGAGACCCTGTACAGTAGTATG 59.623 42.308 21.18 9.67 31.84 2.39
605 607 4.079672 AGAGACCCTGTACAGTAGTATGCT 60.080 45.833 21.18 11.25 31.84 3.79
606 608 5.132312 AGAGACCCTGTACAGTAGTATGCTA 59.868 44.000 21.18 0.00 31.84 3.49
607 609 5.131784 AGACCCTGTACAGTAGTATGCTAC 58.868 45.833 21.18 12.62 45.96 3.58
608 610 4.213513 ACCCTGTACAGTAGTATGCTACC 58.786 47.826 21.18 3.15 46.60 3.18
614 620 6.060136 TGTACAGTAGTATGCTACCCTACAG 58.940 44.000 16.35 4.12 46.60 2.74
621 627 5.871834 AGTATGCTACCCTACAGACTCTAG 58.128 45.833 0.00 0.00 33.23 2.43
623 629 4.425180 TGCTACCCTACAGACTCTAGAG 57.575 50.000 18.49 18.49 0.00 2.43
729 737 3.515901 TGCCATTTTTATGTACCCAACCC 59.484 43.478 0.00 0.00 0.00 4.11
750 758 0.974010 CCCTGCCCTAGACGTTACCA 60.974 60.000 0.00 0.00 0.00 3.25
836 844 0.704664 ACCAGGAGGAACCAAATCCC 59.295 55.000 0.00 0.00 40.59 3.85
900 908 2.099431 CAAGAGCTCGGCTGCAGTC 61.099 63.158 16.64 12.92 39.88 3.51
1315 1323 3.573967 TGCCCTTGGATTGTCTCTTTTTC 59.426 43.478 0.00 0.00 0.00 2.29
1316 1324 3.829026 GCCCTTGGATTGTCTCTTTTTCT 59.171 43.478 0.00 0.00 0.00 2.52
1317 1325 4.082517 GCCCTTGGATTGTCTCTTTTTCTC 60.083 45.833 0.00 0.00 0.00 2.87
1355 1363 0.326927 TGGTCCGGTCCTTGGAATTC 59.673 55.000 18.85 0.00 37.23 2.17
1362 1370 3.124921 CCTTGGAATTCGCGCGGT 61.125 61.111 31.69 16.72 0.00 5.68
1375 1383 1.291877 GCGCGGTGTGTTTGATCTCT 61.292 55.000 8.83 0.00 0.00 3.10
1377 1385 0.798776 GCGGTGTGTTTGATCTCTGG 59.201 55.000 0.00 0.00 0.00 3.86
1440 1448 1.069049 GGCTGCAACCTCATGTTTTGT 59.931 47.619 0.50 0.00 34.00 2.83
1455 1463 9.546428 CTCATGTTTTGTGGATGTCATATACTA 57.454 33.333 0.00 0.00 0.00 1.82
1481 1489 8.766000 TTATACTTCATTGTTTGCGTTCTAGA 57.234 30.769 0.00 0.00 0.00 2.43
1485 1493 4.123506 TCATTGTTTGCGTTCTAGACACA 58.876 39.130 0.00 0.00 0.00 3.72
1521 1529 6.521133 CGCAAGAACTGAAATTTCATGACTAC 59.479 38.462 20.76 13.25 43.02 2.73
1527 1535 3.369756 TGAAATTTCATGACTACGACGCC 59.630 43.478 16.91 0.00 31.01 5.68
1531 1539 0.170339 TCATGACTACGACGCCAGTG 59.830 55.000 7.38 0.00 0.00 3.66
1624 1633 2.667473 AGAAACGGTGTTATCGGGAG 57.333 50.000 0.00 0.00 0.00 4.30
1637 1647 6.108015 TGTTATCGGGAGTTAACATACCAAC 58.892 40.000 8.61 7.83 45.15 3.77
2031 2049 3.207044 ACTCCACCCACCTCTTAATCT 57.793 47.619 0.00 0.00 0.00 2.40
2039 2057 5.986135 CACCCACCTCTTAATCTAATCTTCG 59.014 44.000 0.00 0.00 0.00 3.79
2051 2069 7.527084 AATCTAATCTTCGACACAGTTTAGC 57.473 36.000 7.92 0.00 0.00 3.09
2075 2093 7.438459 AGCGAAACAACTATAGCTTTATCGATT 59.562 33.333 1.71 0.00 0.00 3.34
2167 2189 6.470557 ACCGATCATTTTCAAAAGCAATTG 57.529 33.333 0.00 0.00 0.00 2.32
2340 2364 6.474819 TTGGTGAATGAGTAAACACATACG 57.525 37.500 0.00 0.00 35.33 3.06
2465 2489 4.757149 GGTCAAGTATCACAGAAGTTGCTT 59.243 41.667 0.00 0.00 0.00 3.91
2537 2563 5.045286 ACCAATTCTTTCATCAGGACTAGCT 60.045 40.000 0.00 0.00 0.00 3.32
2787 2813 7.450323 TCCCAAGGTTACCTCATTTTTCTTTAG 59.550 37.037 3.62 0.00 30.89 1.85
2909 2935 9.528018 TGAAATTTTGTATTCAGTCCTTTTGTC 57.472 29.630 0.00 0.00 32.14 3.18
2910 2936 8.887036 AAATTTTGTATTCAGTCCTTTTGTCC 57.113 30.769 0.00 0.00 0.00 4.02
2911 2937 6.399639 TTTTGTATTCAGTCCTTTTGTCCC 57.600 37.500 0.00 0.00 0.00 4.46
2912 2938 4.028993 TGTATTCAGTCCTTTTGTCCCC 57.971 45.455 0.00 0.00 0.00 4.81
2913 2939 2.604912 ATTCAGTCCTTTTGTCCCCC 57.395 50.000 0.00 0.00 0.00 5.40
2957 2983 5.414454 TGCTTATGTGTCTTTCCCATGTAAC 59.586 40.000 0.00 0.00 0.00 2.50
2969 2995 5.816955 TCCCATGTAACGGAATCATATGA 57.183 39.130 8.10 8.10 0.00 2.15
3077 3103 7.108847 GCTAATGCACCCTGAATAGATATTCT 58.891 38.462 12.51 0.00 39.79 2.40
3213 3239 9.594936 TTTAGAAGGGATTTCTTTTCCAATGTA 57.405 29.630 0.00 0.00 43.68 2.29
3290 3316 3.410631 TTGTTGTGGCGAGAAGGAATA 57.589 42.857 0.00 0.00 0.00 1.75
3492 3518 7.121315 AGCTTATGTACCTTCCATTCTGTTTTC 59.879 37.037 0.00 0.00 0.00 2.29
3627 3654 2.706339 TTTTGCAGTGCCAAAATGGT 57.294 40.000 13.72 0.00 40.46 3.55
3903 3930 4.217118 CCTTTCCTTGTTTCACATCTGAGG 59.783 45.833 0.00 0.00 0.00 3.86
4138 4165 2.672961 TCTTGCTGTACCTTGATCGG 57.327 50.000 0.00 0.00 0.00 4.18
4203 4231 2.797074 GTCCTAGAATACTGGACGGC 57.203 55.000 0.00 0.00 40.44 5.68
4211 4239 0.541863 ATACTGGACGGCCTTTCAGG 59.458 55.000 21.08 4.21 38.80 3.86
4281 4309 5.184096 GCTAGCTACTTGATACATCTGCCTA 59.816 44.000 7.70 0.00 0.00 3.93
4319 4347 8.810652 TTTCTGTTCATTTACCTTAAACATGC 57.189 30.769 0.00 0.00 0.00 4.06
4580 4608 1.009675 CAAAGTGCGTGACAGCCAC 60.010 57.895 0.00 0.00 42.30 5.01
4951 4982 1.190833 CCTCTGCCTGGTCTGTGTCT 61.191 60.000 0.00 0.00 0.00 3.41
5060 5092 3.777106 TCAACTGAGGAACTGCTTGAT 57.223 42.857 0.00 0.00 41.55 2.57
5070 5102 6.939730 TGAGGAACTGCTTGATACATTTGTTA 59.060 34.615 0.00 0.00 41.55 2.41
5074 5106 7.485913 GGAACTGCTTGATACATTTGTTACATG 59.514 37.037 0.00 0.00 0.00 3.21
5080 5112 6.435430 TGATACATTTGTTACATGCACCTC 57.565 37.500 0.00 0.00 0.00 3.85
5085 5117 5.767665 ACATTTGTTACATGCACCTCAACTA 59.232 36.000 0.00 0.00 0.00 2.24
5120 5152 7.807977 AGATTCTATGATTTATTGGTGCGTT 57.192 32.000 0.00 0.00 0.00 4.84
5148 5180 1.877576 GCCTAAGCCAACCACAAGCC 61.878 60.000 0.00 0.00 0.00 4.35
5188 5227 8.557450 AGTCAATATACTGGATAAGGTTTTGGT 58.443 33.333 0.00 0.00 0.00 3.67
5189 5228 8.837389 GTCAATATACTGGATAAGGTTTTGGTC 58.163 37.037 0.00 0.00 0.00 4.02
5195 5234 3.010138 TGGATAAGGTTTTGGTCTCCCAG 59.990 47.826 0.00 0.00 43.15 4.45
5200 5239 1.686587 GGTTTTGGTCTCCCAGGTTTG 59.313 52.381 0.00 0.00 43.15 2.93
5283 5327 4.082665 TCATTCAAGCAATGCCCAAAAA 57.917 36.364 0.00 0.00 41.72 1.94
5312 5356 9.956640 TGGCCATGAACAATTTTATTTTCTTAT 57.043 25.926 0.00 0.00 0.00 1.73
5328 5372 5.356882 TTCTTATCTGCGTGACCAAAAAG 57.643 39.130 0.00 0.00 0.00 2.27
5332 5376 2.844946 TCTGCGTGACCAAAAAGATGA 58.155 42.857 0.00 0.00 0.00 2.92
5335 5379 4.631377 TCTGCGTGACCAAAAAGATGATAG 59.369 41.667 0.00 0.00 0.00 2.08
5391 5435 5.010012 CACATTGCCTCAAGTTAGGAAAAGT 59.990 40.000 0.00 0.00 37.73 2.66
5444 5490 3.039011 ACCCGATAATGGCTACACTCTT 58.961 45.455 0.00 0.00 0.00 2.85
5461 5507 3.259374 ACTCTTCATTTGCTCTTCTCGGA 59.741 43.478 0.00 0.00 0.00 4.55
5463 5509 5.127845 ACTCTTCATTTGCTCTTCTCGGATA 59.872 40.000 0.00 0.00 0.00 2.59
5467 5513 3.422417 TTTGCTCTTCTCGGATACTCG 57.578 47.619 0.00 0.00 0.00 4.18
5468 5514 0.663688 TGCTCTTCTCGGATACTCGC 59.336 55.000 0.00 0.00 0.00 5.03
5469 5515 0.039888 GCTCTTCTCGGATACTCGCC 60.040 60.000 0.00 0.00 0.00 5.54
5470 5516 0.594110 CTCTTCTCGGATACTCGCCC 59.406 60.000 0.00 0.00 0.00 6.13
5471 5517 0.106868 TCTTCTCGGATACTCGCCCA 60.107 55.000 0.00 0.00 0.00 5.36
5472 5518 0.744874 CTTCTCGGATACTCGCCCAA 59.255 55.000 0.00 0.00 0.00 4.12
5473 5519 1.341531 CTTCTCGGATACTCGCCCAAT 59.658 52.381 0.00 0.00 0.00 3.16
5474 5520 0.673985 TCTCGGATACTCGCCCAATG 59.326 55.000 0.00 0.00 0.00 2.82
5485 5531 2.444696 CCCAATGAGCCAACCCCA 59.555 61.111 0.00 0.00 0.00 4.96
5516 5562 3.587933 TTGGCGCGCGGTTTTTCT 61.588 55.556 33.06 0.00 0.00 2.52
5533 5579 6.309494 GGTTTTTCTATATTTGCGGTTGGAAC 59.691 38.462 0.00 0.00 0.00 3.62
5539 5585 5.659440 ATATTTGCGGTTGGAACTTGATT 57.341 34.783 0.00 0.00 0.00 2.57
5543 5589 6.576662 TTTGCGGTTGGAACTTGATTATTA 57.423 33.333 0.00 0.00 0.00 0.98
5558 5604 3.469008 TTATTACGAGGGATGCACCTG 57.531 47.619 0.00 0.00 42.10 4.00
5581 5627 4.689612 CCTAAAGCTATTAGGCTGGTCA 57.310 45.455 16.66 0.00 42.24 4.02
5582 5628 5.234466 CCTAAAGCTATTAGGCTGGTCAT 57.766 43.478 16.66 0.00 42.24 3.06
5583 5629 6.360370 CCTAAAGCTATTAGGCTGGTCATA 57.640 41.667 16.66 0.00 42.24 2.15
5584 5630 6.402222 CCTAAAGCTATTAGGCTGGTCATAG 58.598 44.000 16.66 0.00 42.24 2.23
5585 5631 5.896073 AAAGCTATTAGGCTGGTCATAGT 57.104 39.130 0.00 0.00 42.24 2.12
5586 5632 4.881019 AGCTATTAGGCTGGTCATAGTG 57.119 45.455 0.00 0.00 41.43 2.74
5587 5633 3.580458 AGCTATTAGGCTGGTCATAGTGG 59.420 47.826 0.00 0.00 41.43 4.00
5588 5634 3.307059 GCTATTAGGCTGGTCATAGTGGG 60.307 52.174 0.00 0.00 0.00 4.61
5589 5635 1.507140 TTAGGCTGGTCATAGTGGGG 58.493 55.000 0.00 0.00 0.00 4.96
5590 5636 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
5591 5637 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
5592 5638 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
5593 5639 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
5594 5640 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
5595 5641 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
5596 5642 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
5597 5643 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
5598 5644 4.950361 TGGTCATAGTGGGGAGTAACTTA 58.050 43.478 0.00 0.00 0.00 2.24
5599 5645 4.960469 TGGTCATAGTGGGGAGTAACTTAG 59.040 45.833 0.00 0.00 0.00 2.18
5600 5646 5.206587 GGTCATAGTGGGGAGTAACTTAGA 58.793 45.833 0.00 0.00 0.00 2.10
5601 5647 5.068855 GGTCATAGTGGGGAGTAACTTAGAC 59.931 48.000 0.00 0.00 32.58 2.59
5602 5648 5.892686 GTCATAGTGGGGAGTAACTTAGACT 59.107 44.000 0.00 0.00 31.58 3.24
5603 5649 7.059156 GTCATAGTGGGGAGTAACTTAGACTA 58.941 42.308 0.00 0.00 31.58 2.59
5604 5650 7.229106 GTCATAGTGGGGAGTAACTTAGACTAG 59.771 44.444 0.00 0.00 31.58 2.57
5605 5651 5.533333 AGTGGGGAGTAACTTAGACTAGT 57.467 43.478 0.00 0.00 0.00 2.57
5606 5652 6.649041 AGTGGGGAGTAACTTAGACTAGTA 57.351 41.667 0.00 0.00 0.00 1.82
5607 5653 7.037342 AGTGGGGAGTAACTTAGACTAGTAA 57.963 40.000 0.00 0.00 0.00 2.24
5608 5654 7.650660 AGTGGGGAGTAACTTAGACTAGTAAT 58.349 38.462 0.00 0.00 0.00 1.89
5609 5655 8.785859 AGTGGGGAGTAACTTAGACTAGTAATA 58.214 37.037 0.00 0.00 0.00 0.98
5610 5656 9.585369 GTGGGGAGTAACTTAGACTAGTAATAT 57.415 37.037 0.00 0.00 0.00 1.28
5642 5688 9.964354 TGTTACTAGTCTATGTTACTACCTTCA 57.036 33.333 0.00 0.00 0.00 3.02
5648 5694 8.466617 AGTCTATGTTACTACCTTCATAGTGG 57.533 38.462 0.00 0.00 40.01 4.00
5649 5695 7.506261 AGTCTATGTTACTACCTTCATAGTGGG 59.494 40.741 0.00 0.00 40.01 4.61
5650 5696 7.287235 GTCTATGTTACTACCTTCATAGTGGGT 59.713 40.741 0.00 0.00 40.01 4.51
5651 5697 8.505246 TCTATGTTACTACCTTCATAGTGGGTA 58.495 37.037 0.00 0.00 40.01 3.69
5656 5702 5.517322 CTACCTTCATAGTGGGTAGTGTC 57.483 47.826 9.46 0.00 44.30 3.67
5657 5703 3.786553 ACCTTCATAGTGGGTAGTGTCA 58.213 45.455 0.00 0.00 0.00 3.58
5658 5704 4.362677 ACCTTCATAGTGGGTAGTGTCAT 58.637 43.478 0.00 0.00 0.00 3.06
5659 5705 5.525484 ACCTTCATAGTGGGTAGTGTCATA 58.475 41.667 0.00 0.00 0.00 2.15
5660 5706 5.598830 ACCTTCATAGTGGGTAGTGTCATAG 59.401 44.000 0.00 0.00 0.00 2.23
5661 5707 5.011125 CCTTCATAGTGGGTAGTGTCATAGG 59.989 48.000 0.00 0.00 0.00 2.57
5662 5708 5.138758 TCATAGTGGGTAGTGTCATAGGT 57.861 43.478 0.00 0.00 0.00 3.08
5663 5709 4.893524 TCATAGTGGGTAGTGTCATAGGTG 59.106 45.833 0.00 0.00 0.00 4.00
5664 5710 3.185880 AGTGGGTAGTGTCATAGGTGT 57.814 47.619 0.00 0.00 0.00 4.16
5665 5711 2.832129 AGTGGGTAGTGTCATAGGTGTG 59.168 50.000 0.00 0.00 0.00 3.82
5666 5712 2.093658 GTGGGTAGTGTCATAGGTGTGG 60.094 54.545 0.00 0.00 0.00 4.17
5667 5713 2.185387 GGGTAGTGTCATAGGTGTGGT 58.815 52.381 0.00 0.00 0.00 4.16
5668 5714 3.245694 TGGGTAGTGTCATAGGTGTGGTA 60.246 47.826 0.00 0.00 0.00 3.25
5669 5715 3.770933 GGGTAGTGTCATAGGTGTGGTAA 59.229 47.826 0.00 0.00 0.00 2.85
5670 5716 4.223477 GGGTAGTGTCATAGGTGTGGTAAA 59.777 45.833 0.00 0.00 0.00 2.01
5671 5717 5.280113 GGGTAGTGTCATAGGTGTGGTAAAA 60.280 44.000 0.00 0.00 0.00 1.52
5672 5718 6.412214 GGTAGTGTCATAGGTGTGGTAAAAT 58.588 40.000 0.00 0.00 0.00 1.82
5673 5719 7.364939 GGGTAGTGTCATAGGTGTGGTAAAATA 60.365 40.741 0.00 0.00 0.00 1.40
5674 5720 7.709613 GGTAGTGTCATAGGTGTGGTAAAATAG 59.290 40.741 0.00 0.00 0.00 1.73
5675 5721 7.253905 AGTGTCATAGGTGTGGTAAAATAGT 57.746 36.000 0.00 0.00 0.00 2.12
5676 5722 7.686434 AGTGTCATAGGTGTGGTAAAATAGTT 58.314 34.615 0.00 0.00 0.00 2.24
5677 5723 7.606456 AGTGTCATAGGTGTGGTAAAATAGTTG 59.394 37.037 0.00 0.00 0.00 3.16
5678 5724 6.373216 TGTCATAGGTGTGGTAAAATAGTTGC 59.627 38.462 0.00 0.00 0.00 4.17
5679 5725 5.883673 TCATAGGTGTGGTAAAATAGTTGCC 59.116 40.000 0.00 0.00 0.00 4.52
5680 5726 4.382386 AGGTGTGGTAAAATAGTTGCCT 57.618 40.909 0.00 0.00 0.00 4.75
5681 5727 4.736473 AGGTGTGGTAAAATAGTTGCCTT 58.264 39.130 0.00 0.00 0.00 4.35
5682 5728 4.765339 AGGTGTGGTAAAATAGTTGCCTTC 59.235 41.667 0.00 0.00 0.00 3.46
5683 5729 4.521256 GGTGTGGTAAAATAGTTGCCTTCA 59.479 41.667 0.00 0.00 0.00 3.02
5684 5730 5.185056 GGTGTGGTAAAATAGTTGCCTTCAT 59.815 40.000 0.00 0.00 0.00 2.57
5685 5731 6.295067 GGTGTGGTAAAATAGTTGCCTTCATT 60.295 38.462 0.00 0.00 0.00 2.57
5686 5732 7.151976 GTGTGGTAAAATAGTTGCCTTCATTT 58.848 34.615 0.00 0.00 0.00 2.32
5687 5733 8.301002 GTGTGGTAAAATAGTTGCCTTCATTTA 58.699 33.333 0.00 0.00 0.00 1.40
5688 5734 9.030452 TGTGGTAAAATAGTTGCCTTCATTTAT 57.970 29.630 0.00 0.00 0.00 1.40
5689 5735 9.869757 GTGGTAAAATAGTTGCCTTCATTTATT 57.130 29.630 0.00 0.00 0.00 1.40
5699 5745 9.515226 AGTTGCCTTCATTTATTACTTTGTAGA 57.485 29.630 0.00 0.00 0.00 2.59
5700 5746 9.556030 GTTGCCTTCATTTATTACTTTGTAGAC 57.444 33.333 0.00 0.00 0.00 2.59
5701 5747 9.515226 TTGCCTTCATTTATTACTTTGTAGACT 57.485 29.630 0.00 0.00 0.00 3.24
5702 5748 9.162764 TGCCTTCATTTATTACTTTGTAGACTC 57.837 33.333 0.00 0.00 0.00 3.36
5703 5749 9.162764 GCCTTCATTTATTACTTTGTAGACTCA 57.837 33.333 0.00 0.00 0.00 3.41
5714 5760 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
5715 5761 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
5716 5762 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
5717 5763 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
5718 5764 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
5719 5765 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
5720 5766 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
5721 5767 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
5722 5768 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
5723 5769 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
5724 5770 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.889829 CGTGTTTCCCATGGCCTAAAA 59.110 47.619 6.09 0.99 0.00 1.52
2 3 1.074084 TCGTGTTTCCCATGGCCTAAA 59.926 47.619 6.09 3.60 0.00 1.85
4 5 0.035820 GTCGTGTTTCCCATGGCCTA 60.036 55.000 6.09 0.00 0.00 3.93
6 7 0.965363 ATGTCGTGTTTCCCATGGCC 60.965 55.000 6.09 0.00 33.54 5.36
7 8 0.171007 CATGTCGTGTTTCCCATGGC 59.829 55.000 6.09 0.00 35.15 4.40
9 10 2.813754 ACTTCATGTCGTGTTTCCCATG 59.186 45.455 0.00 0.00 36.80 3.66
11 12 2.631160 ACTTCATGTCGTGTTTCCCA 57.369 45.000 0.00 0.00 0.00 4.37
12 13 4.062991 AGTTACTTCATGTCGTGTTTCCC 58.937 43.478 0.00 0.00 0.00 3.97
13 14 5.347907 CCTAGTTACTTCATGTCGTGTTTCC 59.652 44.000 0.00 0.00 0.00 3.13
17 18 5.717078 TTCCTAGTTACTTCATGTCGTGT 57.283 39.130 0.00 0.00 0.00 4.49
19 20 5.109903 GCATTCCTAGTTACTTCATGTCGT 58.890 41.667 0.00 0.00 0.00 4.34
20 21 4.508124 GGCATTCCTAGTTACTTCATGTCG 59.492 45.833 0.00 0.00 0.00 4.35
21 22 5.428253 TGGCATTCCTAGTTACTTCATGTC 58.572 41.667 0.00 0.00 0.00 3.06
22 23 5.431765 CTGGCATTCCTAGTTACTTCATGT 58.568 41.667 0.00 0.00 0.00 3.21
23 24 4.274459 GCTGGCATTCCTAGTTACTTCATG 59.726 45.833 0.00 0.00 0.00 3.07
24 25 4.080356 TGCTGGCATTCCTAGTTACTTCAT 60.080 41.667 0.00 0.00 0.00 2.57
25 26 3.263170 TGCTGGCATTCCTAGTTACTTCA 59.737 43.478 0.00 0.00 0.00 3.02
26 27 3.873910 TGCTGGCATTCCTAGTTACTTC 58.126 45.455 0.00 0.00 0.00 3.01
27 28 4.265073 CTTGCTGGCATTCCTAGTTACTT 58.735 43.478 0.00 0.00 0.00 2.24
28 29 3.878778 CTTGCTGGCATTCCTAGTTACT 58.121 45.455 0.00 0.00 0.00 2.24
29 30 2.356069 GCTTGCTGGCATTCCTAGTTAC 59.644 50.000 0.00 0.00 0.00 2.50
30 31 2.026356 TGCTTGCTGGCATTCCTAGTTA 60.026 45.455 0.00 0.00 37.29 2.24
31 32 1.272092 TGCTTGCTGGCATTCCTAGTT 60.272 47.619 0.00 0.00 37.29 2.24
32 33 0.329261 TGCTTGCTGGCATTCCTAGT 59.671 50.000 0.00 0.00 37.29 2.57
33 34 0.737219 GTGCTTGCTGGCATTCCTAG 59.263 55.000 7.36 0.00 44.34 3.02
34 35 0.038021 TGTGCTTGCTGGCATTCCTA 59.962 50.000 7.36 0.00 44.34 2.94
35 36 1.228644 TGTGCTTGCTGGCATTCCT 60.229 52.632 7.36 0.00 44.34 3.36
36 37 1.214589 CTGTGCTTGCTGGCATTCC 59.785 57.895 7.36 0.00 44.34 3.01
37 38 0.599558 TTCTGTGCTTGCTGGCATTC 59.400 50.000 7.36 0.00 44.34 2.67
38 39 1.263356 ATTCTGTGCTTGCTGGCATT 58.737 45.000 7.36 0.00 44.34 3.56
39 40 1.067142 CAATTCTGTGCTTGCTGGCAT 60.067 47.619 7.36 0.00 44.34 4.40
40 41 0.315886 CAATTCTGTGCTTGCTGGCA 59.684 50.000 0.33 0.33 40.15 4.92
41 42 0.599558 TCAATTCTGTGCTTGCTGGC 59.400 50.000 0.00 0.00 0.00 4.85
42 43 1.400629 CGTCAATTCTGTGCTTGCTGG 60.401 52.381 0.00 0.00 0.00 4.85
43 44 1.532437 TCGTCAATTCTGTGCTTGCTG 59.468 47.619 0.00 0.00 0.00 4.41
44 45 1.802960 CTCGTCAATTCTGTGCTTGCT 59.197 47.619 0.00 0.00 0.00 3.91
45 46 1.135859 CCTCGTCAATTCTGTGCTTGC 60.136 52.381 0.00 0.00 0.00 4.01
46 47 1.466167 CCCTCGTCAATTCTGTGCTTG 59.534 52.381 0.00 0.00 0.00 4.01
47 48 1.072331 ACCCTCGTCAATTCTGTGCTT 59.928 47.619 0.00 0.00 0.00 3.91
48 49 0.687354 ACCCTCGTCAATTCTGTGCT 59.313 50.000 0.00 0.00 0.00 4.40
49 50 2.380084 TACCCTCGTCAATTCTGTGC 57.620 50.000 0.00 0.00 0.00 4.57
50 51 3.262420 CCTTACCCTCGTCAATTCTGTG 58.738 50.000 0.00 0.00 0.00 3.66
51 52 2.904434 ACCTTACCCTCGTCAATTCTGT 59.096 45.455 0.00 0.00 0.00 3.41
52 53 3.262420 CACCTTACCCTCGTCAATTCTG 58.738 50.000 0.00 0.00 0.00 3.02
53 54 2.354805 GCACCTTACCCTCGTCAATTCT 60.355 50.000 0.00 0.00 0.00 2.40
54 55 2.007608 GCACCTTACCCTCGTCAATTC 58.992 52.381 0.00 0.00 0.00 2.17
55 56 1.339727 GGCACCTTACCCTCGTCAATT 60.340 52.381 0.00 0.00 0.00 2.32
56 57 0.252197 GGCACCTTACCCTCGTCAAT 59.748 55.000 0.00 0.00 0.00 2.57
57 58 1.675219 GGCACCTTACCCTCGTCAA 59.325 57.895 0.00 0.00 0.00 3.18
58 59 3.384348 GGCACCTTACCCTCGTCA 58.616 61.111 0.00 0.00 0.00 4.35
75 76 3.744530 CGCTACTTTCCTATCTTTGGGGG 60.745 52.174 0.00 0.00 0.00 5.40
76 77 3.134081 TCGCTACTTTCCTATCTTTGGGG 59.866 47.826 0.00 0.00 0.00 4.96
77 78 4.372656 CTCGCTACTTTCCTATCTTTGGG 58.627 47.826 0.00 0.00 0.00 4.12
78 79 3.804873 GCTCGCTACTTTCCTATCTTTGG 59.195 47.826 0.00 0.00 0.00 3.28
79 80 3.487574 CGCTCGCTACTTTCCTATCTTTG 59.512 47.826 0.00 0.00 0.00 2.77
80 81 3.380637 TCGCTCGCTACTTTCCTATCTTT 59.619 43.478 0.00 0.00 0.00 2.52
81 82 2.950309 TCGCTCGCTACTTTCCTATCTT 59.050 45.455 0.00 0.00 0.00 2.40
82 83 2.550606 CTCGCTCGCTACTTTCCTATCT 59.449 50.000 0.00 0.00 0.00 1.98
83 84 2.918968 GCTCGCTCGCTACTTTCCTATC 60.919 54.545 0.00 0.00 0.00 2.08
84 85 1.001158 GCTCGCTCGCTACTTTCCTAT 60.001 52.381 0.00 0.00 0.00 2.57
85 86 0.381089 GCTCGCTCGCTACTTTCCTA 59.619 55.000 0.00 0.00 0.00 2.94
86 87 1.139947 GCTCGCTCGCTACTTTCCT 59.860 57.895 0.00 0.00 0.00 3.36
87 88 1.878975 GGCTCGCTCGCTACTTTCC 60.879 63.158 0.00 0.00 0.00 3.13
88 89 1.878975 GGGCTCGCTCGCTACTTTC 60.879 63.158 0.00 0.00 0.00 2.62
89 90 2.184579 GGGCTCGCTCGCTACTTT 59.815 61.111 0.00 0.00 0.00 2.66
90 91 4.194720 CGGGCTCGCTCGCTACTT 62.195 66.667 0.00 0.00 31.37 2.24
92 93 4.615834 CTCGGGCTCGCTCGCTAC 62.616 72.222 0.00 0.00 40.19 3.58
93 94 4.851179 TCTCGGGCTCGCTCGCTA 62.851 66.667 0.00 0.00 40.19 4.26
113 114 1.384989 ATCCACGAGGTAGACCGCAG 61.385 60.000 0.00 0.00 42.08 5.18
114 115 1.379443 ATCCACGAGGTAGACCGCA 60.379 57.895 0.00 0.00 42.08 5.69
115 116 1.065928 CATCCACGAGGTAGACCGC 59.934 63.158 0.00 0.00 42.08 5.68
116 117 0.381089 GTCATCCACGAGGTAGACCG 59.619 60.000 12.66 0.00 42.08 4.79
117 118 1.405821 CAGTCATCCACGAGGTAGACC 59.594 57.143 17.40 0.00 39.16 3.85
118 119 1.405821 CCAGTCATCCACGAGGTAGAC 59.594 57.143 14.76 14.76 38.87 2.59
119 120 1.763968 CCAGTCATCCACGAGGTAGA 58.236 55.000 0.00 0.00 35.89 2.59
120 121 0.103208 GCCAGTCATCCACGAGGTAG 59.897 60.000 0.00 0.00 35.89 3.18
121 122 0.613572 TGCCAGTCATCCACGAGGTA 60.614 55.000 0.00 0.00 35.89 3.08
122 123 1.480212 TTGCCAGTCATCCACGAGGT 61.480 55.000 0.00 0.00 35.89 3.85
123 124 1.021390 GTTGCCAGTCATCCACGAGG 61.021 60.000 0.00 0.00 0.00 4.63
124 125 0.320683 TGTTGCCAGTCATCCACGAG 60.321 55.000 0.00 0.00 0.00 4.18
125 126 0.107643 TTGTTGCCAGTCATCCACGA 59.892 50.000 0.00 0.00 0.00 4.35
126 127 0.238289 GTTGTTGCCAGTCATCCACG 59.762 55.000 0.00 0.00 0.00 4.94
127 128 1.317613 TGTTGTTGCCAGTCATCCAC 58.682 50.000 0.00 0.00 0.00 4.02
128 129 2.291209 ATGTTGTTGCCAGTCATCCA 57.709 45.000 0.00 0.00 0.00 3.41
129 130 2.094545 GGAATGTTGTTGCCAGTCATCC 60.095 50.000 0.00 0.00 0.00 3.51
130 131 2.557924 TGGAATGTTGTTGCCAGTCATC 59.442 45.455 0.00 0.00 0.00 2.92
131 132 2.596346 TGGAATGTTGTTGCCAGTCAT 58.404 42.857 0.00 0.00 0.00 3.06
132 133 2.064434 TGGAATGTTGTTGCCAGTCA 57.936 45.000 0.00 0.00 0.00 3.41
133 134 2.950433 CATGGAATGTTGTTGCCAGTC 58.050 47.619 0.00 0.00 40.20 3.51
146 147 7.453126 TCCCTAACACAAAATTACACATGGAAT 59.547 33.333 0.00 0.00 0.00 3.01
147 148 6.778069 TCCCTAACACAAAATTACACATGGAA 59.222 34.615 0.00 0.00 0.00 3.53
148 149 6.207810 GTCCCTAACACAAAATTACACATGGA 59.792 38.462 0.00 0.00 0.00 3.41
149 150 6.015856 TGTCCCTAACACAAAATTACACATGG 60.016 38.462 0.00 0.00 31.20 3.66
150 151 6.976088 TGTCCCTAACACAAAATTACACATG 58.024 36.000 0.00 0.00 31.20 3.21
151 152 6.208599 CCTGTCCCTAACACAAAATTACACAT 59.791 38.462 0.00 0.00 33.24 3.21
152 153 5.533154 CCTGTCCCTAACACAAAATTACACA 59.467 40.000 0.00 0.00 33.24 3.72
153 154 5.048294 CCCTGTCCCTAACACAAAATTACAC 60.048 44.000 0.00 0.00 33.24 2.90
154 155 5.074115 CCCTGTCCCTAACACAAAATTACA 58.926 41.667 0.00 0.00 33.24 2.41
155 156 4.461431 CCCCTGTCCCTAACACAAAATTAC 59.539 45.833 0.00 0.00 33.24 1.89
156 157 4.668636 CCCCTGTCCCTAACACAAAATTA 58.331 43.478 0.00 0.00 33.24 1.40
157 158 3.506398 CCCCTGTCCCTAACACAAAATT 58.494 45.455 0.00 0.00 33.24 1.82
158 159 2.821625 GCCCCTGTCCCTAACACAAAAT 60.822 50.000 0.00 0.00 33.24 1.82
159 160 1.479757 GCCCCTGTCCCTAACACAAAA 60.480 52.381 0.00 0.00 33.24 2.44
160 161 0.111639 GCCCCTGTCCCTAACACAAA 59.888 55.000 0.00 0.00 33.24 2.83
161 162 1.063070 TGCCCCTGTCCCTAACACAA 61.063 55.000 0.00 0.00 33.24 3.33
162 163 1.462432 TGCCCCTGTCCCTAACACA 60.462 57.895 0.00 0.00 33.24 3.72
163 164 1.299976 CTGCCCCTGTCCCTAACAC 59.700 63.158 0.00 0.00 33.24 3.32
164 165 2.602676 GCTGCCCCTGTCCCTAACA 61.603 63.158 0.00 0.00 36.18 2.41
165 166 2.272471 GCTGCCCCTGTCCCTAAC 59.728 66.667 0.00 0.00 0.00 2.34
166 167 3.015145 GGCTGCCCCTGTCCCTAA 61.015 66.667 7.66 0.00 0.00 2.69
177 178 3.896133 CACATGCATCGGGCTGCC 61.896 66.667 11.05 11.05 45.15 4.85
178 179 4.564116 GCACATGCATCGGGCTGC 62.564 66.667 13.90 5.42 45.15 5.25
188 189 1.820519 TCCTCCTTTTCATGCACATGC 59.179 47.619 5.73 0.00 38.65 4.06
189 190 4.260907 CGTATCCTCCTTTTCATGCACATG 60.261 45.833 4.18 4.18 40.09 3.21
190 191 3.879295 CGTATCCTCCTTTTCATGCACAT 59.121 43.478 0.00 0.00 0.00 3.21
191 192 3.270027 CGTATCCTCCTTTTCATGCACA 58.730 45.455 0.00 0.00 0.00 4.57
192 193 2.614057 CCGTATCCTCCTTTTCATGCAC 59.386 50.000 0.00 0.00 0.00 4.57
193 194 2.421388 CCCGTATCCTCCTTTTCATGCA 60.421 50.000 0.00 0.00 0.00 3.96
194 195 2.222027 CCCGTATCCTCCTTTTCATGC 58.778 52.381 0.00 0.00 0.00 4.06
195 196 2.851195 CCCCGTATCCTCCTTTTCATG 58.149 52.381 0.00 0.00 0.00 3.07
196 197 1.143073 GCCCCGTATCCTCCTTTTCAT 59.857 52.381 0.00 0.00 0.00 2.57
197 198 0.544697 GCCCCGTATCCTCCTTTTCA 59.455 55.000 0.00 0.00 0.00 2.69
198 199 0.544697 TGCCCCGTATCCTCCTTTTC 59.455 55.000 0.00 0.00 0.00 2.29
199 200 0.546598 CTGCCCCGTATCCTCCTTTT 59.453 55.000 0.00 0.00 0.00 2.27
200 201 1.984288 GCTGCCCCGTATCCTCCTTT 61.984 60.000 0.00 0.00 0.00 3.11
201 202 2.444256 GCTGCCCCGTATCCTCCTT 61.444 63.158 0.00 0.00 0.00 3.36
202 203 2.844839 GCTGCCCCGTATCCTCCT 60.845 66.667 0.00 0.00 0.00 3.69
203 204 3.942439 GGCTGCCCCGTATCCTCC 61.942 72.222 7.66 0.00 0.00 4.30
212 213 3.365265 CAACTGTTCGGCTGCCCC 61.365 66.667 14.12 1.68 0.00 5.80
213 214 2.281484 TCAACTGTTCGGCTGCCC 60.281 61.111 14.12 0.00 0.00 5.36
214 215 2.970974 GCTCAACTGTTCGGCTGCC 61.971 63.158 9.11 9.11 0.00 4.85
215 216 2.558313 GCTCAACTGTTCGGCTGC 59.442 61.111 0.00 0.00 0.00 5.25
216 217 1.016130 ATCGCTCAACTGTTCGGCTG 61.016 55.000 10.90 0.00 0.00 4.85
217 218 0.737715 GATCGCTCAACTGTTCGGCT 60.738 55.000 10.90 0.00 0.00 5.52
218 219 0.737715 AGATCGCTCAACTGTTCGGC 60.738 55.000 0.00 0.00 0.00 5.54
219 220 1.714794 AAGATCGCTCAACTGTTCGG 58.285 50.000 0.00 0.00 0.00 4.30
220 221 3.759418 TCTAAGATCGCTCAACTGTTCG 58.241 45.455 0.00 0.00 0.00 3.95
221 222 4.032331 GCTTCTAAGATCGCTCAACTGTTC 59.968 45.833 0.00 0.00 0.00 3.18
222 223 3.929610 GCTTCTAAGATCGCTCAACTGTT 59.070 43.478 0.00 0.00 0.00 3.16
223 224 3.516615 GCTTCTAAGATCGCTCAACTGT 58.483 45.455 0.00 0.00 0.00 3.55
224 225 2.863137 GGCTTCTAAGATCGCTCAACTG 59.137 50.000 0.00 0.00 0.00 3.16
225 226 2.497675 TGGCTTCTAAGATCGCTCAACT 59.502 45.455 0.00 0.00 0.00 3.16
226 227 2.605366 GTGGCTTCTAAGATCGCTCAAC 59.395 50.000 0.00 0.00 0.00 3.18
227 228 2.418746 GGTGGCTTCTAAGATCGCTCAA 60.419 50.000 0.00 0.00 0.00 3.02
228 229 1.137086 GGTGGCTTCTAAGATCGCTCA 59.863 52.381 0.00 0.00 0.00 4.26
229 230 1.859383 GGTGGCTTCTAAGATCGCTC 58.141 55.000 0.00 0.00 0.00 5.03
230 231 0.103208 CGGTGGCTTCTAAGATCGCT 59.897 55.000 0.00 0.00 0.00 4.93
231 232 1.491505 GCGGTGGCTTCTAAGATCGC 61.492 60.000 0.00 0.00 35.83 4.58
232 233 2.594541 GCGGTGGCTTCTAAGATCG 58.405 57.895 0.00 0.00 35.83 3.69
244 245 4.838152 CCGTGGATCCAGCGGTGG 62.838 72.222 31.32 27.73 46.63 4.61
245 246 3.723235 CTCCGTGGATCCAGCGGTG 62.723 68.421 34.62 31.08 39.64 4.94
246 247 3.461773 CTCCGTGGATCCAGCGGT 61.462 66.667 34.62 0.00 39.64 5.68
247 248 3.147595 TCTCCGTGGATCCAGCGG 61.148 66.667 32.72 32.72 39.84 5.52
248 249 2.105128 GTCTCCGTGGATCCAGCG 59.895 66.667 16.81 20.35 0.00 5.18
249 250 1.142748 CTGTCTCCGTGGATCCAGC 59.857 63.158 16.81 9.43 0.00 4.85
250 251 1.819229 CCTGTCTCCGTGGATCCAG 59.181 63.158 16.81 9.42 0.00 3.86
251 252 2.359169 GCCTGTCTCCGTGGATCCA 61.359 63.158 11.44 11.44 0.00 3.41
252 253 2.359169 TGCCTGTCTCCGTGGATCC 61.359 63.158 4.20 4.20 0.00 3.36
253 254 1.153549 GTGCCTGTCTCCGTGGATC 60.154 63.158 0.00 0.00 0.00 3.36
254 255 2.660064 GGTGCCTGTCTCCGTGGAT 61.660 63.158 0.00 0.00 0.00 3.41
255 256 3.311110 GGTGCCTGTCTCCGTGGA 61.311 66.667 0.00 0.00 0.00 4.02
256 257 3.177194 TTGGTGCCTGTCTCCGTGG 62.177 63.158 0.00 0.00 0.00 4.94
257 258 1.961277 GTTGGTGCCTGTCTCCGTG 60.961 63.158 0.00 0.00 0.00 4.94
258 259 2.426023 GTTGGTGCCTGTCTCCGT 59.574 61.111 0.00 0.00 0.00 4.69
259 260 2.149803 TACGTTGGTGCCTGTCTCCG 62.150 60.000 0.00 0.00 0.00 4.63
260 261 0.669625 GTACGTTGGTGCCTGTCTCC 60.670 60.000 0.00 0.00 0.00 3.71
261 262 0.317479 AGTACGTTGGTGCCTGTCTC 59.683 55.000 0.00 0.00 0.00 3.36
262 263 0.756903 AAGTACGTTGGTGCCTGTCT 59.243 50.000 0.00 0.00 0.00 3.41
263 264 1.589803 AAAGTACGTTGGTGCCTGTC 58.410 50.000 0.00 0.00 0.00 3.51
264 265 1.673920 CAAAAGTACGTTGGTGCCTGT 59.326 47.619 0.00 0.00 0.00 4.00
265 266 1.673920 ACAAAAGTACGTTGGTGCCTG 59.326 47.619 14.42 3.06 0.00 4.85
266 267 1.673920 CACAAAAGTACGTTGGTGCCT 59.326 47.619 14.86 0.00 0.00 4.75
267 268 1.268845 CCACAAAAGTACGTTGGTGCC 60.269 52.381 20.04 0.00 0.00 5.01
268 269 1.402613 ACCACAAAAGTACGTTGGTGC 59.597 47.619 20.04 0.00 0.00 5.01
269 270 4.879104 TTACCACAAAAGTACGTTGGTG 57.121 40.909 18.89 18.89 0.00 4.17
270 271 5.589452 TCAATTACCACAAAAGTACGTTGGT 59.411 36.000 10.45 10.45 0.00 3.67
271 272 6.062434 TCAATTACCACAAAAGTACGTTGG 57.938 37.500 14.42 5.92 0.00 3.77
272 273 6.580791 CCATCAATTACCACAAAAGTACGTTG 59.419 38.462 0.00 9.89 0.00 4.10
273 274 6.263617 ACCATCAATTACCACAAAAGTACGTT 59.736 34.615 0.00 0.00 0.00 3.99
274 275 5.766174 ACCATCAATTACCACAAAAGTACGT 59.234 36.000 0.00 0.00 0.00 3.57
275 276 6.072948 TGACCATCAATTACCACAAAAGTACG 60.073 38.462 0.00 0.00 0.00 3.67
276 277 7.174253 TCTGACCATCAATTACCACAAAAGTAC 59.826 37.037 0.00 0.00 0.00 2.73
277 278 7.174253 GTCTGACCATCAATTACCACAAAAGTA 59.826 37.037 0.00 0.00 0.00 2.24
278 279 6.016276 GTCTGACCATCAATTACCACAAAAGT 60.016 38.462 0.00 0.00 0.00 2.66
279 280 6.381801 GTCTGACCATCAATTACCACAAAAG 58.618 40.000 0.00 0.00 0.00 2.27
280 281 5.049060 CGTCTGACCATCAATTACCACAAAA 60.049 40.000 1.55 0.00 0.00 2.44
281 282 4.454161 CGTCTGACCATCAATTACCACAAA 59.546 41.667 1.55 0.00 0.00 2.83
282 283 4.000325 CGTCTGACCATCAATTACCACAA 59.000 43.478 1.55 0.00 0.00 3.33
283 284 3.007506 ACGTCTGACCATCAATTACCACA 59.992 43.478 1.55 0.00 0.00 4.17
284 285 3.370978 CACGTCTGACCATCAATTACCAC 59.629 47.826 1.55 0.00 0.00 4.16
285 286 3.259625 TCACGTCTGACCATCAATTACCA 59.740 43.478 1.55 0.00 0.00 3.25
286 287 3.857052 TCACGTCTGACCATCAATTACC 58.143 45.455 1.55 0.00 0.00 2.85
287 288 4.744570 TCTCACGTCTGACCATCAATTAC 58.255 43.478 1.55 0.00 0.00 1.89
288 289 5.400066 TTCTCACGTCTGACCATCAATTA 57.600 39.130 1.55 0.00 0.00 1.40
289 290 3.961480 TCTCACGTCTGACCATCAATT 57.039 42.857 1.55 0.00 0.00 2.32
290 291 3.961480 TTCTCACGTCTGACCATCAAT 57.039 42.857 1.55 0.00 0.00 2.57
291 292 3.744238 TTTCTCACGTCTGACCATCAA 57.256 42.857 1.55 0.00 0.00 2.57
292 293 3.368427 GGATTTCTCACGTCTGACCATCA 60.368 47.826 1.55 0.00 0.00 3.07
293 294 3.190874 GGATTTCTCACGTCTGACCATC 58.809 50.000 1.55 0.00 0.00 3.51
294 295 2.417379 CGGATTTCTCACGTCTGACCAT 60.417 50.000 1.55 0.00 0.00 3.55
295 296 1.067846 CGGATTTCTCACGTCTGACCA 60.068 52.381 1.55 0.00 0.00 4.02
296 297 1.201647 TCGGATTTCTCACGTCTGACC 59.798 52.381 1.55 0.00 0.00 4.02
297 298 2.161808 TCTCGGATTTCTCACGTCTGAC 59.838 50.000 0.00 0.00 0.00 3.51
298 299 2.433436 TCTCGGATTTCTCACGTCTGA 58.567 47.619 0.00 0.00 0.00 3.27
299 300 2.921634 TCTCGGATTTCTCACGTCTG 57.078 50.000 0.00 0.00 0.00 3.51
300 301 2.164624 CCTTCTCGGATTTCTCACGTCT 59.835 50.000 0.00 0.00 33.16 4.18
301 302 2.163815 TCCTTCTCGGATTTCTCACGTC 59.836 50.000 0.00 0.00 36.69 4.34
302 303 2.168496 TCCTTCTCGGATTTCTCACGT 58.832 47.619 0.00 0.00 36.69 4.49
303 304 2.941453 TCCTTCTCGGATTTCTCACG 57.059 50.000 0.00 0.00 36.69 4.35
310 311 8.847363 GAGCATTCTCACATCCTTCTCGGATT 62.847 46.154 0.00 0.00 43.15 3.01
311 312 7.471413 GAGCATTCTCACATCCTTCTCGGAT 62.471 48.000 0.00 0.00 44.80 4.18
312 313 6.238035 GAGCATTCTCACATCCTTCTCGGA 62.238 50.000 0.00 0.00 41.70 4.55
313 314 2.158986 AGCATTCTCACATCCTTCTCGG 60.159 50.000 0.00 0.00 0.00 4.63
314 315 3.122297 GAGCATTCTCACATCCTTCTCG 58.878 50.000 0.00 0.00 39.16 4.04
315 316 4.405116 AGAGCATTCTCACATCCTTCTC 57.595 45.455 0.00 0.00 41.81 2.87
316 317 4.224594 TCAAGAGCATTCTCACATCCTTCT 59.775 41.667 0.00 0.00 41.81 2.85
317 318 4.511527 TCAAGAGCATTCTCACATCCTTC 58.488 43.478 0.00 0.00 41.81 3.46
318 319 4.564782 TCAAGAGCATTCTCACATCCTT 57.435 40.909 0.00 0.00 41.81 3.36
319 320 4.163649 TCATCAAGAGCATTCTCACATCCT 59.836 41.667 0.00 0.00 41.81 3.24
320 321 4.272991 GTCATCAAGAGCATTCTCACATCC 59.727 45.833 0.00 0.00 41.81 3.51
321 322 4.874396 TGTCATCAAGAGCATTCTCACATC 59.126 41.667 0.00 0.00 41.81 3.06
322 323 4.840271 TGTCATCAAGAGCATTCTCACAT 58.160 39.130 0.00 0.00 41.81 3.21
323 324 4.251268 CTGTCATCAAGAGCATTCTCACA 58.749 43.478 0.00 0.00 41.81 3.58
324 325 4.093115 CACTGTCATCAAGAGCATTCTCAC 59.907 45.833 0.00 0.00 41.81 3.51
325 326 4.251268 CACTGTCATCAAGAGCATTCTCA 58.749 43.478 0.00 0.00 41.81 3.27
326 327 3.622163 CCACTGTCATCAAGAGCATTCTC 59.378 47.826 0.00 0.00 39.65 2.87
327 328 3.607741 CCACTGTCATCAAGAGCATTCT 58.392 45.455 0.00 0.00 34.29 2.40
328 329 2.097142 GCCACTGTCATCAAGAGCATTC 59.903 50.000 0.00 0.00 0.00 2.67
329 330 2.089980 GCCACTGTCATCAAGAGCATT 58.910 47.619 0.00 0.00 0.00 3.56
330 331 1.681166 GGCCACTGTCATCAAGAGCAT 60.681 52.381 0.00 0.00 0.00 3.79
331 332 0.321919 GGCCACTGTCATCAAGAGCA 60.322 55.000 0.00 0.00 0.00 4.26
332 333 0.035630 AGGCCACTGTCATCAAGAGC 60.036 55.000 5.01 0.00 0.00 4.09
333 334 1.735386 CAGGCCACTGTCATCAAGAG 58.265 55.000 5.01 0.00 39.92 2.85
334 335 3.942351 CAGGCCACTGTCATCAAGA 57.058 52.632 5.01 0.00 39.92 3.02
344 345 0.326264 GAGACATCCAACAGGCCACT 59.674 55.000 5.01 0.00 0.00 4.00
345 346 0.678048 GGAGACATCCAACAGGCCAC 60.678 60.000 5.01 0.00 45.87 5.01
346 347 1.685224 GGAGACATCCAACAGGCCA 59.315 57.895 5.01 0.00 45.87 5.36
347 348 4.645809 GGAGACATCCAACAGGCC 57.354 61.111 0.00 0.00 45.87 5.19
355 356 3.740764 GCTCATTGTCAGAGGAGACATCC 60.741 52.174 0.00 0.00 46.90 3.51
356 357 3.118847 TGCTCATTGTCAGAGGAGACATC 60.119 47.826 0.00 0.00 46.90 3.06
357 358 2.836372 TGCTCATTGTCAGAGGAGACAT 59.164 45.455 0.00 0.00 46.90 3.06
358 359 2.250924 TGCTCATTGTCAGAGGAGACA 58.749 47.619 0.00 0.00 46.12 3.41
359 360 3.325293 TTGCTCATTGTCAGAGGAGAC 57.675 47.619 0.00 0.00 34.87 3.36
360 361 3.326006 ACTTTGCTCATTGTCAGAGGAGA 59.674 43.478 0.00 0.00 34.87 3.71
361 362 3.672808 ACTTTGCTCATTGTCAGAGGAG 58.327 45.455 0.00 0.00 34.87 3.69
362 363 3.777106 ACTTTGCTCATTGTCAGAGGA 57.223 42.857 0.00 0.00 33.72 3.71
363 364 6.506500 AAATACTTTGCTCATTGTCAGAGG 57.493 37.500 0.00 0.00 33.72 3.69
364 365 7.587629 TGAAAATACTTTGCTCATTGTCAGAG 58.412 34.615 0.00 0.00 36.21 3.35
365 366 7.509141 TGAAAATACTTTGCTCATTGTCAGA 57.491 32.000 0.00 0.00 0.00 3.27
416 417 9.565213 GATTGAAGTGGATGTTAGATTTTTCTG 57.435 33.333 0.00 0.00 0.00 3.02
419 420 9.525826 AGAGATTGAAGTGGATGTTAGATTTTT 57.474 29.630 0.00 0.00 0.00 1.94
423 424 9.525826 AAAAAGAGATTGAAGTGGATGTTAGAT 57.474 29.630 0.00 0.00 0.00 1.98
426 427 9.567776 TGTAAAAAGAGATTGAAGTGGATGTTA 57.432 29.630 0.00 0.00 0.00 2.41
428 429 8.463930 TTGTAAAAAGAGATTGAAGTGGATGT 57.536 30.769 0.00 0.00 0.00 3.06
429 430 9.918630 AATTGTAAAAAGAGATTGAAGTGGATG 57.081 29.630 0.00 0.00 0.00 3.51
431 432 9.965824 GAAATTGTAAAAAGAGATTGAAGTGGA 57.034 29.630 0.00 0.00 0.00 4.02
451 452 3.181456 TGCCAGGGGAAACAAAGAAATTG 60.181 43.478 0.00 0.00 44.95 2.32
465 466 0.251297 TGAGTGTTTGATGCCAGGGG 60.251 55.000 0.00 0.00 0.00 4.79
466 467 1.843368 ATGAGTGTTTGATGCCAGGG 58.157 50.000 0.00 0.00 0.00 4.45
468 469 2.230508 AGCAATGAGTGTTTGATGCCAG 59.769 45.455 0.00 0.00 34.44 4.85
517 519 6.554982 AGCATAGAATTAGAGTGGTATGTCCA 59.445 38.462 0.00 0.00 45.01 4.02
520 522 9.686683 AAAAAGCATAGAATTAGAGTGGTATGT 57.313 29.630 0.00 0.00 0.00 2.29
564 566 4.331717 GTCTCTTTGATTCGCCGGATTTTA 59.668 41.667 5.05 0.00 0.00 1.52
572 574 1.339151 ACAGGGTCTCTTTGATTCGCC 60.339 52.381 0.00 0.00 0.00 5.54
574 576 4.177026 CTGTACAGGGTCTCTTTGATTCG 58.823 47.826 15.49 0.00 0.00 3.34
587 589 3.573110 GGGTAGCATACTACTGTACAGGG 59.427 52.174 26.12 19.41 46.77 4.45
599 601 5.867330 TCTAGAGTCTGTAGGGTAGCATAC 58.133 45.833 9.69 9.69 42.04 2.39
600 602 5.845065 TCTCTAGAGTCTGTAGGGTAGCATA 59.155 44.000 19.21 0.00 0.00 3.14
601 603 4.661240 TCTCTAGAGTCTGTAGGGTAGCAT 59.339 45.833 19.21 0.00 0.00 3.79
603 605 4.693042 TCTCTAGAGTCTGTAGGGTAGC 57.307 50.000 19.21 0.00 0.00 3.58
605 607 6.012683 ACAGTTTCTCTAGAGTCTGTAGGGTA 60.013 42.308 28.18 6.37 35.84 3.69
606 608 5.222171 ACAGTTTCTCTAGAGTCTGTAGGGT 60.222 44.000 28.18 14.69 35.84 4.34
607 609 5.258051 ACAGTTTCTCTAGAGTCTGTAGGG 58.742 45.833 28.18 14.25 35.84 3.53
608 610 6.177610 AGACAGTTTCTCTAGAGTCTGTAGG 58.822 44.000 28.74 15.73 36.75 3.18
623 629 3.131396 TCAAAAGAGCGGAGACAGTTTC 58.869 45.455 0.00 0.00 0.00 2.78
679 687 1.808531 GCAGGATGGTGCAGTTTGCA 61.809 55.000 0.00 0.00 44.80 4.08
680 688 1.080298 GCAGGATGGTGCAGTTTGC 60.080 57.895 0.00 0.00 43.41 3.68
729 737 2.420568 TAACGTCTAGGGCAGGGCG 61.421 63.158 0.00 0.00 0.00 6.13
750 758 1.338107 CGCCCTTTTTCCCCTTCTTT 58.662 50.000 0.00 0.00 0.00 2.52
881 889 2.263852 CTGCAGCCGAGCTCTTGA 59.736 61.111 12.85 0.00 36.40 3.02
1355 1363 2.202171 GATCAAACACACCGCGCG 60.202 61.111 25.67 25.67 0.00 6.86
1362 1370 0.250252 TGCGCCAGAGATCAAACACA 60.250 50.000 4.18 0.00 0.00 3.72
1455 1463 9.378551 TCTAGAACGCAAACAATGAAGTATAAT 57.621 29.630 0.00 0.00 0.00 1.28
1456 1464 8.653338 GTCTAGAACGCAAACAATGAAGTATAA 58.347 33.333 0.00 0.00 0.00 0.98
1457 1465 7.815549 TGTCTAGAACGCAAACAATGAAGTATA 59.184 33.333 0.00 0.00 0.00 1.47
1458 1466 6.649141 TGTCTAGAACGCAAACAATGAAGTAT 59.351 34.615 0.00 0.00 0.00 2.12
1459 1467 5.986741 TGTCTAGAACGCAAACAATGAAGTA 59.013 36.000 0.00 0.00 0.00 2.24
1460 1468 4.814234 TGTCTAGAACGCAAACAATGAAGT 59.186 37.500 0.00 0.00 0.00 3.01
1461 1469 5.140177 GTGTCTAGAACGCAAACAATGAAG 58.860 41.667 0.00 0.00 38.31 3.02
1462 1470 4.572795 TGTGTCTAGAACGCAAACAATGAA 59.427 37.500 0.00 0.00 45.16 2.57
1481 1489 2.942376 TCTTGCGTGACTTGAATTGTGT 59.058 40.909 0.00 0.00 0.00 3.72
1485 1493 3.876914 TCAGTTCTTGCGTGACTTGAATT 59.123 39.130 0.00 0.00 0.00 2.17
1527 1535 5.305139 TCAAGATTGATTGTGATGCACTG 57.695 39.130 0.00 0.00 31.75 3.66
1531 1539 7.228108 TCTCCTTATCAAGATTGATTGTGATGC 59.772 37.037 12.96 0.00 45.13 3.91
1624 1633 3.689649 CCTCCTGCAGTTGGTATGTTAAC 59.310 47.826 13.81 0.00 0.00 2.01
1637 1647 4.706476 TCACATTTAAAATCCCTCCTGCAG 59.294 41.667 6.78 6.78 0.00 4.41
1834 1851 3.806949 ACAGTTCAAATGCCCTAAGGA 57.193 42.857 0.00 0.00 33.47 3.36
2031 2049 5.050644 TCGCTAAACTGTGTCGAAGATTA 57.949 39.130 0.00 0.00 40.67 1.75
2039 2057 4.531659 AGTTGTTTCGCTAAACTGTGTC 57.468 40.909 14.18 2.21 44.44 3.67
2051 2069 8.752254 TCAATCGATAAAGCTATAGTTGTTTCG 58.248 33.333 11.61 11.61 0.00 3.46
2075 2093 7.392953 TGAATAATGTGGTTAGCAAGAACATCA 59.607 33.333 0.00 0.00 31.29 3.07
2124 2146 7.302350 TCGGTTACACACATTCTATTTGATG 57.698 36.000 0.00 0.00 0.00 3.07
2167 2189 3.128589 TCAGTCACCAAGCAACAAGAAAC 59.871 43.478 0.00 0.00 0.00 2.78
2247 2271 2.026641 GTATGCATCATGCCCAAGTGT 58.973 47.619 7.30 0.00 44.23 3.55
2282 2306 4.997395 ACTGATGAACACCTGACATGTTAC 59.003 41.667 0.00 0.00 40.36 2.50
2350 2374 9.953565 ACATAGGTTGTTTAGCTATACTCAAAA 57.046 29.630 14.32 0.00 43.84 2.44
2361 2385 4.156008 CCCTCAACACATAGGTTGTTTAGC 59.844 45.833 6.01 0.00 46.36 3.09
2465 2489 7.839705 AGATTAGGTCTCATGGTTCAGTAGTTA 59.160 37.037 0.00 0.00 28.45 2.24
2623 2649 7.448469 GGGCCTACACAATTAATTATCAGTCAT 59.552 37.037 0.84 0.00 0.00 3.06
2787 2813 8.706521 GGGAAGACTATTAATATATCCTCCACC 58.293 40.741 17.98 9.48 0.00 4.61
2921 2947 7.807977 AGACACATAAGCATACCCATAAAAG 57.192 36.000 0.00 0.00 0.00 2.27
2957 2983 9.797556 ATAAATCATGCATTTCATATGATTCCG 57.202 29.630 6.17 0.00 45.68 4.30
3077 3103 1.600636 GCCTACACACAGCCAGCAA 60.601 57.895 0.00 0.00 0.00 3.91
3121 3147 4.940046 CCTATTGAACTGTGCATCTTGTCT 59.060 41.667 0.00 0.00 0.00 3.41
3263 3289 4.693566 CCTTCTCGCCACAACAATTTACTA 59.306 41.667 0.00 0.00 0.00 1.82
3272 3298 2.695359 TGTATTCCTTCTCGCCACAAC 58.305 47.619 0.00 0.00 0.00 3.32
3612 3639 2.417243 GGTATGACCATTTTGGCACTGC 60.417 50.000 0.00 0.00 42.67 4.40
3627 3654 3.585289 TGCAGGTAGAACAAAGGGTATGA 59.415 43.478 0.00 0.00 0.00 2.15
4138 4165 7.951347 ATTATAATGAAGGATGATGGAAGCC 57.049 36.000 0.00 0.00 0.00 4.35
4166 4194 8.217131 TCTAGGACCAACAAAAGTTTCTTTAC 57.783 34.615 0.00 0.00 0.00 2.01
4281 4309 5.596836 TGAACAGAAAAAGAAACAGGCAT 57.403 34.783 0.00 0.00 0.00 4.40
4580 4608 1.446907 GCTGGATTATGAGGCCATCG 58.553 55.000 5.01 0.00 34.31 3.84
4951 4982 6.942005 ACATGACAGACATTTAGGAATCACAA 59.058 34.615 0.00 0.00 37.07 3.33
5060 5092 5.767665 AGTTGAGGTGCATGTAACAAATGTA 59.232 36.000 0.45 0.00 0.00 2.29
5070 5102 7.759489 TCTTTTAAATAGTTGAGGTGCATGT 57.241 32.000 0.00 0.00 0.00 3.21
5074 5106 9.914131 AATCTTTCTTTTAAATAGTTGAGGTGC 57.086 29.630 0.00 0.00 0.00 5.01
5120 5152 1.960689 GTTGGCTTAGGCTCAAACCAA 59.039 47.619 7.43 7.00 38.73 3.67
5164 5198 8.778059 AGACCAAAACCTTATCCAGTATATTGA 58.222 33.333 0.00 0.00 0.00 2.57
5230 5269 5.651387 TTTCCGCATGTTCAATCCAATTA 57.349 34.783 0.00 0.00 0.00 1.40
5242 5286 6.579666 ATGATTGCTAATATTTCCGCATGT 57.420 33.333 0.00 0.00 31.77 3.21
5283 5327 9.299465 AGAAAATAAAATTGTTCATGGCCAATT 57.701 25.926 10.96 14.11 41.69 2.32
5284 5328 8.866970 AGAAAATAAAATTGTTCATGGCCAAT 57.133 26.923 10.96 0.00 32.83 3.16
5295 5339 9.341899 GTCACGCAGATAAGAAAATAAAATTGT 57.658 29.630 0.00 0.00 0.00 2.71
5303 5347 5.957842 TTTGGTCACGCAGATAAGAAAAT 57.042 34.783 0.00 0.00 0.00 1.82
5312 5356 2.844946 TCATCTTTTTGGTCACGCAGA 58.155 42.857 0.00 0.00 0.00 4.26
5335 5379 7.596995 GCTTGAAGTGAGTATGTATAGATGGTC 59.403 40.741 0.00 0.00 0.00 4.02
5351 5395 0.469494 TGTGCCTCAGCTTGAAGTGA 59.531 50.000 0.00 0.00 40.80 3.41
5425 5471 4.322080 TGAAGAGTGTAGCCATTATCGG 57.678 45.455 0.00 0.00 0.00 4.18
5444 5490 4.498177 CGAGTATCCGAGAAGAGCAAATGA 60.498 45.833 0.00 0.00 0.00 2.57
5461 5507 0.546122 TTGGCTCATTGGGCGAGTAT 59.454 50.000 1.68 0.00 32.83 2.12
5463 5509 1.675641 GTTGGCTCATTGGGCGAGT 60.676 57.895 1.68 0.00 32.83 4.18
5467 5513 3.076916 GGGGTTGGCTCATTGGGC 61.077 66.667 0.00 0.00 0.00 5.36
5468 5514 1.984026 GTGGGGTTGGCTCATTGGG 60.984 63.158 0.00 0.00 0.00 4.12
5469 5515 0.542702 AAGTGGGGTTGGCTCATTGG 60.543 55.000 0.00 0.00 0.00 3.16
5470 5516 1.001181 CAAAGTGGGGTTGGCTCATTG 59.999 52.381 0.00 0.00 0.00 2.82
5471 5517 1.341080 CAAAGTGGGGTTGGCTCATT 58.659 50.000 0.00 0.00 0.00 2.57
5472 5518 1.187567 GCAAAGTGGGGTTGGCTCAT 61.188 55.000 0.00 0.00 0.00 2.90
5473 5519 1.832167 GCAAAGTGGGGTTGGCTCA 60.832 57.895 0.00 0.00 0.00 4.26
5474 5520 2.574018 GGCAAAGTGGGGTTGGCTC 61.574 63.158 3.70 0.00 45.42 4.70
5507 5553 4.796312 CCAACCGCAAATATAGAAAAACCG 59.204 41.667 0.00 0.00 0.00 4.44
5516 5562 6.767524 AATCAAGTTCCAACCGCAAATATA 57.232 33.333 0.00 0.00 0.00 0.86
5533 5579 4.452455 GGTGCATCCCTCGTAATAATCAAG 59.548 45.833 0.00 0.00 0.00 3.02
5539 5585 1.691976 CCAGGTGCATCCCTCGTAATA 59.308 52.381 0.00 0.00 36.75 0.98
5543 5589 4.101448 GCCAGGTGCATCCCTCGT 62.101 66.667 0.00 0.00 40.77 4.18
5576 5622 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
5577 5623 5.068855 GTCTAAGTTACTCCCCACTATGACC 59.931 48.000 0.00 0.00 0.00 4.02
5578 5624 5.892686 AGTCTAAGTTACTCCCCACTATGAC 59.107 44.000 0.00 0.00 0.00 3.06
5579 5625 6.088541 AGTCTAAGTTACTCCCCACTATGA 57.911 41.667 0.00 0.00 0.00 2.15
5580 5626 7.061688 ACTAGTCTAAGTTACTCCCCACTATG 58.938 42.308 0.00 0.00 0.00 2.23
5581 5627 7.223472 ACTAGTCTAAGTTACTCCCCACTAT 57.777 40.000 0.00 0.00 0.00 2.12
5582 5628 6.649041 ACTAGTCTAAGTTACTCCCCACTA 57.351 41.667 0.00 0.00 0.00 2.74
5583 5629 5.533333 ACTAGTCTAAGTTACTCCCCACT 57.467 43.478 0.00 0.00 0.00 4.00
5584 5630 7.894753 ATTACTAGTCTAAGTTACTCCCCAC 57.105 40.000 0.00 0.00 0.00 4.61
5616 5662 9.964354 TGAAGGTAGTAACATAGACTAGTAACA 57.036 33.333 0.00 0.00 30.08 2.41
5622 5668 9.570468 CCACTATGAAGGTAGTAACATAGACTA 57.430 37.037 16.37 0.00 42.41 2.59
5623 5669 7.506261 CCCACTATGAAGGTAGTAACATAGACT 59.494 40.741 16.37 0.00 42.41 3.24
5624 5670 7.287235 ACCCACTATGAAGGTAGTAACATAGAC 59.713 40.741 16.37 0.00 42.41 2.59
5625 5671 7.359849 ACCCACTATGAAGGTAGTAACATAGA 58.640 38.462 16.37 0.00 42.41 1.98
5626 5672 7.598759 ACCCACTATGAAGGTAGTAACATAG 57.401 40.000 0.00 0.00 44.14 2.23
5627 5673 8.701908 CTACCCACTATGAAGGTAGTAACATA 57.298 38.462 7.19 0.00 45.39 2.29
5628 5674 7.598759 CTACCCACTATGAAGGTAGTAACAT 57.401 40.000 7.19 0.00 45.39 2.71
5635 5681 4.938028 TGACACTACCCACTATGAAGGTA 58.062 43.478 0.00 0.00 35.02 3.08
5636 5682 3.786553 TGACACTACCCACTATGAAGGT 58.213 45.455 0.00 0.00 37.69 3.50
5637 5683 5.011125 CCTATGACACTACCCACTATGAAGG 59.989 48.000 0.00 0.00 0.00 3.46
5638 5684 5.598830 ACCTATGACACTACCCACTATGAAG 59.401 44.000 0.00 0.00 0.00 3.02
5639 5685 5.362717 CACCTATGACACTACCCACTATGAA 59.637 44.000 0.00 0.00 0.00 2.57
5640 5686 4.893524 CACCTATGACACTACCCACTATGA 59.106 45.833 0.00 0.00 0.00 2.15
5641 5687 4.649674 ACACCTATGACACTACCCACTATG 59.350 45.833 0.00 0.00 0.00 2.23
5642 5688 4.649674 CACACCTATGACACTACCCACTAT 59.350 45.833 0.00 0.00 0.00 2.12
5643 5689 4.021229 CACACCTATGACACTACCCACTA 58.979 47.826 0.00 0.00 0.00 2.74
5644 5690 2.832129 CACACCTATGACACTACCCACT 59.168 50.000 0.00 0.00 0.00 4.00
5645 5691 2.093658 CCACACCTATGACACTACCCAC 60.094 54.545 0.00 0.00 0.00 4.61
5646 5692 2.184533 CCACACCTATGACACTACCCA 58.815 52.381 0.00 0.00 0.00 4.51
5647 5693 2.185387 ACCACACCTATGACACTACCC 58.815 52.381 0.00 0.00 0.00 3.69
5648 5694 5.410355 TTTACCACACCTATGACACTACC 57.590 43.478 0.00 0.00 0.00 3.18
5649 5695 8.255905 ACTATTTTACCACACCTATGACACTAC 58.744 37.037 0.00 0.00 0.00 2.73
5650 5696 8.370266 ACTATTTTACCACACCTATGACACTA 57.630 34.615 0.00 0.00 0.00 2.74
5651 5697 7.253905 ACTATTTTACCACACCTATGACACT 57.746 36.000 0.00 0.00 0.00 3.55
5652 5698 7.625606 GCAACTATTTTACCACACCTATGACAC 60.626 40.741 0.00 0.00 0.00 3.67
5653 5699 6.373216 GCAACTATTTTACCACACCTATGACA 59.627 38.462 0.00 0.00 0.00 3.58
5654 5700 6.183360 GGCAACTATTTTACCACACCTATGAC 60.183 42.308 0.00 0.00 0.00 3.06
5655 5701 5.883673 GGCAACTATTTTACCACACCTATGA 59.116 40.000 0.00 0.00 0.00 2.15
5656 5702 6.131544 GGCAACTATTTTACCACACCTATG 57.868 41.667 0.00 0.00 0.00 2.23
5674 5720 9.556030 GTCTACAAAGTAATAAATGAAGGCAAC 57.444 33.333 0.00 0.00 0.00 4.17
5675 5721 9.515226 AGTCTACAAAGTAATAAATGAAGGCAA 57.485 29.630 0.00 0.00 0.00 4.52
5676 5722 9.162764 GAGTCTACAAAGTAATAAATGAAGGCA 57.837 33.333 0.00 0.00 0.00 4.75
5677 5723 9.162764 TGAGTCTACAAAGTAATAAATGAAGGC 57.837 33.333 0.00 0.00 0.00 4.35
5688 5734 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
5689 5735 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
5690 5736 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
5691 5737 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
5692 5738 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
5693 5739 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
5694 5740 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
5695 5741 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
5696 5742 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
5697 5743 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
5698 5744 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
5699 5745 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
5700 5746 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
5701 5747 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
5702 5748 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.