Multiple sequence alignment - TraesCS7B01G242300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G242300 | chr7B | 100.000 | 7792 | 0 | 0 | 1 | 7792 | 450562850 | 450570641 | 0.000000e+00 | 14390 |
1 | TraesCS7B01G242300 | chr7B | 98.876 | 89 | 0 | 1 | 1 | 89 | 744290700 | 744290787 | 2.910000e-34 | 158 |
2 | TraesCS7B01G242300 | chr7B | 97.727 | 88 | 1 | 1 | 3 | 90 | 8922486 | 8922572 | 4.870000e-32 | 150 |
3 | TraesCS7B01G242300 | chr7D | 96.322 | 4405 | 124 | 19 | 2169 | 6552 | 431934954 | 431930567 | 0.000000e+00 | 7203 |
4 | TraesCS7B01G242300 | chr7D | 93.524 | 2023 | 70 | 27 | 107 | 2089 | 431936954 | 431934953 | 0.000000e+00 | 2953 |
5 | TraesCS7B01G242300 | chr7D | 92.645 | 1210 | 66 | 12 | 6563 | 7756 | 431930527 | 431929325 | 0.000000e+00 | 1720 |
6 | TraesCS7B01G242300 | chr7A | 96.406 | 3005 | 73 | 17 | 3233 | 6216 | 501058988 | 501061978 | 0.000000e+00 | 4918 |
7 | TraesCS7B01G242300 | chr7A | 93.054 | 2030 | 89 | 29 | 83 | 2089 | 501056010 | 501058010 | 0.000000e+00 | 2920 |
8 | TraesCS7B01G242300 | chr7A | 96.757 | 740 | 24 | 0 | 2169 | 2908 | 501058009 | 501058748 | 0.000000e+00 | 1234 |
9 | TraesCS7B01G242300 | chr7A | 90.256 | 780 | 45 | 12 | 6560 | 7336 | 501062097 | 501062848 | 0.000000e+00 | 990 |
10 | TraesCS7B01G242300 | chr7A | 89.928 | 139 | 11 | 1 | 4797 | 4935 | 686805271 | 686805136 | 8.040000e-40 | 176 |
11 | TraesCS7B01G242300 | chr7A | 98.936 | 94 | 1 | 0 | 6470 | 6563 | 501061972 | 501062065 | 1.340000e-37 | 169 |
12 | TraesCS7B01G242300 | chr7A | 95.918 | 98 | 2 | 1 | 2079 | 2174 | 129877032 | 129876935 | 2.910000e-34 | 158 |
13 | TraesCS7B01G242300 | chr7A | 91.566 | 83 | 6 | 1 | 2983 | 3065 | 501058745 | 501058826 | 6.390000e-21 | 113 |
14 | TraesCS7B01G242300 | chr1D | 91.506 | 777 | 48 | 8 | 4161 | 4935 | 468887229 | 468887989 | 0.000000e+00 | 1053 |
15 | TraesCS7B01G242300 | chr1D | 90.886 | 779 | 50 | 9 | 4161 | 4935 | 49519585 | 49520346 | 0.000000e+00 | 1026 |
16 | TraesCS7B01G242300 | chr4D | 91.014 | 779 | 49 | 11 | 4161 | 4935 | 500521908 | 500521147 | 0.000000e+00 | 1031 |
17 | TraesCS7B01G242300 | chr1B | 88.757 | 507 | 32 | 10 | 4440 | 4935 | 46149830 | 46150322 | 1.450000e-166 | 597 |
18 | TraesCS7B01G242300 | chr1B | 94.419 | 215 | 12 | 0 | 4161 | 4375 | 46139499 | 46139713 | 1.620000e-86 | 331 |
19 | TraesCS7B01G242300 | chr1B | 100.000 | 84 | 0 | 0 | 1 | 84 | 334446153 | 334446236 | 1.050000e-33 | 156 |
20 | TraesCS7B01G242300 | chr5D | 89.826 | 344 | 24 | 5 | 4272 | 4613 | 445653645 | 445653979 | 1.550000e-116 | 431 |
21 | TraesCS7B01G242300 | chr5D | 89.535 | 344 | 25 | 5 | 4272 | 4613 | 445651784 | 445652118 | 7.230000e-115 | 425 |
22 | TraesCS7B01G242300 | chr5A | 100.000 | 85 | 0 | 0 | 1 | 85 | 541842052 | 541842136 | 2.910000e-34 | 158 |
23 | TraesCS7B01G242300 | chr6A | 100.000 | 84 | 0 | 0 | 1 | 84 | 457402410 | 457402327 | 1.050000e-33 | 156 |
24 | TraesCS7B01G242300 | chr6A | 97.701 | 87 | 2 | 0 | 1 | 87 | 600701765 | 600701851 | 4.870000e-32 | 150 |
25 | TraesCS7B01G242300 | chr5B | 100.000 | 84 | 0 | 0 | 1 | 84 | 543932643 | 543932726 | 1.050000e-33 | 156 |
26 | TraesCS7B01G242300 | chr5B | 93.204 | 103 | 3 | 3 | 2073 | 2172 | 711237867 | 711237968 | 1.750000e-31 | 148 |
27 | TraesCS7B01G242300 | chrUn | 96.774 | 93 | 1 | 1 | 2085 | 2175 | 23900850 | 23900942 | 3.770000e-33 | 154 |
28 | TraesCS7B01G242300 | chr2B | 96.774 | 93 | 1 | 1 | 2085 | 2175 | 799161052 | 799161144 | 3.770000e-33 | 154 |
29 | TraesCS7B01G242300 | chr2B | 96.774 | 93 | 1 | 1 | 2085 | 2175 | 799214208 | 799214300 | 3.770000e-33 | 154 |
30 | TraesCS7B01G242300 | chr2B | 88.793 | 116 | 8 | 3 | 2088 | 2201 | 798196761 | 798196649 | 3.790000e-28 | 137 |
31 | TraesCS7B01G242300 | chr4B | 98.824 | 85 | 1 | 0 | 1 | 85 | 216815011 | 216815095 | 1.350000e-32 | 152 |
32 | TraesCS7B01G242300 | chr3B | 90.000 | 120 | 7 | 4 | 2081 | 2195 | 427633827 | 427633708 | 4.870000e-32 | 150 |
33 | TraesCS7B01G242300 | chr3A | 95.699 | 93 | 2 | 1 | 2081 | 2171 | 629669318 | 629669410 | 1.750000e-31 | 148 |
34 | TraesCS7B01G242300 | chr3A | 97.647 | 85 | 2 | 0 | 1 | 85 | 581268702 | 581268786 | 6.300000e-31 | 147 |
35 | TraesCS7B01G242300 | chr2D | 90.909 | 110 | 3 | 6 | 2085 | 2191 | 422331552 | 422331657 | 2.930000e-29 | 141 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7B01G242300 | chr7B | 450562850 | 450570641 | 7791 | False | 14390.000000 | 14390 | 100.000000 | 1 | 7792 | 1 | chr7B.!!$F2 | 7791 |
1 | TraesCS7B01G242300 | chr7D | 431929325 | 431936954 | 7629 | True | 3958.666667 | 7203 | 94.163667 | 107 | 7756 | 3 | chr7D.!!$R1 | 7649 |
2 | TraesCS7B01G242300 | chr7A | 501056010 | 501062848 | 6838 | False | 1724.000000 | 4918 | 94.495833 | 83 | 7336 | 6 | chr7A.!!$F1 | 7253 |
3 | TraesCS7B01G242300 | chr1D | 468887229 | 468887989 | 760 | False | 1053.000000 | 1053 | 91.506000 | 4161 | 4935 | 1 | chr1D.!!$F2 | 774 |
4 | TraesCS7B01G242300 | chr1D | 49519585 | 49520346 | 761 | False | 1026.000000 | 1026 | 90.886000 | 4161 | 4935 | 1 | chr1D.!!$F1 | 774 |
5 | TraesCS7B01G242300 | chr4D | 500521147 | 500521908 | 761 | True | 1031.000000 | 1031 | 91.014000 | 4161 | 4935 | 1 | chr4D.!!$R1 | 774 |
6 | TraesCS7B01G242300 | chr5D | 445651784 | 445653979 | 2195 | False | 428.000000 | 431 | 89.680500 | 4272 | 4613 | 2 | chr5D.!!$F1 | 341 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
663 | 671 | 0.178891 | TCAGCTCTTCCTCCACCCTT | 60.179 | 55.0 | 0.00 | 0.00 | 0.00 | 3.95 | F |
667 | 675 | 0.322906 | CTCTTCCTCCACCCTTTGCC | 60.323 | 60.0 | 0.00 | 0.00 | 0.00 | 4.52 | F |
2101 | 2165 | 0.324091 | TCAACTACTCCCTCCGTCCC | 60.324 | 60.0 | 0.00 | 0.00 | 0.00 | 4.46 | F |
2103 | 2167 | 0.338814 | AACTACTCCCTCCGTCCCAT | 59.661 | 55.0 | 0.00 | 0.00 | 0.00 | 4.00 | F |
3752 | 3922 | 0.172803 | GGTGTGTAGGCGACCAGTAG | 59.827 | 60.0 | 0.00 | 0.00 | 0.00 | 2.57 | F |
3835 | 4005 | 1.067295 | AGGCCATGAGTCACTTTCCA | 58.933 | 50.0 | 5.01 | 0.00 | 0.00 | 3.53 | F |
3972 | 4150 | 1.821216 | TCCTTTCAGATGGAAACGCC | 58.179 | 50.0 | 0.00 | 0.00 | 40.51 | 5.68 | F |
5353 | 5539 | 0.530744 | ATTCCGTTAGCGAGCACTCA | 59.469 | 50.0 | 0.00 | 0.00 | 41.33 | 3.41 | F |
6456 | 6657 | 1.011451 | GGTGAGCTCTTGTCGAGTGC | 61.011 | 60.0 | 16.19 | 6.08 | 43.51 | 4.40 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2153 | 2217 | 0.861155 | ATCTACTCCCTCCGTCCCAT | 59.139 | 55.000 | 0.00 | 0.0 | 0.00 | 4.00 | R |
2155 | 2219 | 1.272037 | CCTATCTACTCCCTCCGTCCC | 60.272 | 61.905 | 0.00 | 0.0 | 0.00 | 4.46 | R |
3730 | 3900 | 0.034896 | CTGGTCGCCTACACACCTTT | 59.965 | 55.000 | 0.00 | 0.0 | 0.00 | 3.11 | R |
4002 | 4180 | 2.301346 | GATTCCGGTTCAGGCATCAAT | 58.699 | 47.619 | 0.00 | 0.0 | 34.68 | 2.57 | R |
4767 | 4953 | 2.289002 | AGAAGAAGCAACTTGTGAAGCG | 59.711 | 45.455 | 0.34 | 0.0 | 0.00 | 4.68 | R |
5131 | 5317 | 3.313526 | GCACGAAAGAGGCATCAATGTAT | 59.686 | 43.478 | 0.00 | 0.0 | 35.60 | 2.29 | R |
5445 | 5643 | 3.697166 | AGGTGCCAGGTTTGGTTATAAG | 58.303 | 45.455 | 0.00 | 0.0 | 46.80 | 1.73 | R |
6614 | 6860 | 0.250234 | CTTCTGTCATCCCGGCTGAA | 59.750 | 55.000 | 6.53 | 3.0 | 0.00 | 3.02 | R |
7577 | 7828 | 0.031585 | TGCAGGACGCGTATATGGTC | 59.968 | 55.000 | 13.97 | 0.0 | 46.97 | 4.02 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
56 | 57 | 8.801715 | TTAGTACAAAGTTAGTACGAAGTTGG | 57.198 | 34.615 | 9.24 | 8.92 | 44.92 | 3.77 |
57 | 58 | 6.218746 | AGTACAAAGTTAGTACGAAGTTGGG | 58.781 | 40.000 | 13.37 | 9.80 | 44.92 | 4.12 |
58 | 59 | 5.027293 | ACAAAGTTAGTACGAAGTTGGGT | 57.973 | 39.130 | 13.37 | 10.29 | 37.78 | 4.51 |
59 | 60 | 5.052481 | ACAAAGTTAGTACGAAGTTGGGTC | 58.948 | 41.667 | 13.37 | 0.00 | 37.78 | 4.46 |
61 | 62 | 5.479124 | AAGTTAGTACGAAGTTGGGTCAT | 57.521 | 39.130 | 7.86 | 0.00 | 37.78 | 3.06 |
62 | 63 | 5.069501 | AGTTAGTACGAAGTTGGGTCATC | 57.930 | 43.478 | 0.00 | 0.00 | 37.78 | 2.92 |
63 | 64 | 4.771054 | AGTTAGTACGAAGTTGGGTCATCT | 59.229 | 41.667 | 0.00 | 0.00 | 37.78 | 2.90 |
64 | 65 | 5.948162 | AGTTAGTACGAAGTTGGGTCATCTA | 59.052 | 40.000 | 0.00 | 0.00 | 37.78 | 1.98 |
66 | 67 | 5.934402 | AGTACGAAGTTGGGTCATCTATT | 57.066 | 39.130 | 0.00 | 0.00 | 37.78 | 1.73 |
68 | 69 | 6.708285 | AGTACGAAGTTGGGTCATCTATTTT | 58.292 | 36.000 | 0.00 | 0.00 | 37.78 | 1.82 |
69 | 70 | 5.880054 | ACGAAGTTGGGTCATCTATTTTG | 57.120 | 39.130 | 0.00 | 0.00 | 37.78 | 2.44 |
70 | 71 | 4.700213 | ACGAAGTTGGGTCATCTATTTTGG | 59.300 | 41.667 | 0.00 | 0.00 | 37.78 | 3.28 |
71 | 72 | 4.941263 | CGAAGTTGGGTCATCTATTTTGGA | 59.059 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
72 | 73 | 5.414454 | CGAAGTTGGGTCATCTATTTTGGAA | 59.586 | 40.000 | 0.00 | 0.00 | 0.00 | 3.53 |
73 | 74 | 6.590234 | AAGTTGGGTCATCTATTTTGGAAC | 57.410 | 37.500 | 0.00 | 0.00 | 0.00 | 3.62 |
74 | 75 | 4.700213 | AGTTGGGTCATCTATTTTGGAACG | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
75 | 76 | 3.616219 | TGGGTCATCTATTTTGGAACGG | 58.384 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
76 | 77 | 3.264706 | TGGGTCATCTATTTTGGAACGGA | 59.735 | 43.478 | 0.00 | 0.00 | 0.00 | 4.69 |
78 | 79 | 3.877508 | GGTCATCTATTTTGGAACGGAGG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
79 | 80 | 3.877508 | GTCATCTATTTTGGAACGGAGGG | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
80 | 81 | 3.778075 | TCATCTATTTTGGAACGGAGGGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
92 | 93 | 1.108132 | CGGAGGGAGTAGGTAGGTGC | 61.108 | 65.000 | 0.00 | 0.00 | 0.00 | 5.01 |
96 | 97 | 1.076485 | GGAGTAGGTAGGTGCGGGA | 60.076 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
312 | 319 | 5.864474 | GCCAAGATCCATATACTACAACGAG | 59.136 | 44.000 | 0.00 | 0.00 | 0.00 | 4.18 |
367 | 374 | 7.898309 | GGCAATATCAAAACTAAGCGTATATCG | 59.102 | 37.037 | 0.00 | 0.00 | 43.12 | 2.92 |
368 | 375 | 7.898309 | GCAATATCAAAACTAAGCGTATATCGG | 59.102 | 37.037 | 0.00 | 0.00 | 40.26 | 4.18 |
471 | 478 | 9.935682 | ATAAATTTACAGCTGACAATTCATACG | 57.064 | 29.630 | 23.35 | 0.00 | 0.00 | 3.06 |
532 | 540 | 4.510571 | ACCCGCTGGTATAGTAAAAACAG | 58.489 | 43.478 | 0.00 | 0.00 | 45.45 | 3.16 |
632 | 640 | 0.322008 | CAAACAGACCTCCTCCTGCC | 60.322 | 60.000 | 0.00 | 0.00 | 33.90 | 4.85 |
660 | 668 | 0.179936 | CCATCAGCTCTTCCTCCACC | 59.820 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
663 | 671 | 0.178891 | TCAGCTCTTCCTCCACCCTT | 60.179 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
664 | 672 | 0.695347 | CAGCTCTTCCTCCACCCTTT | 59.305 | 55.000 | 0.00 | 0.00 | 0.00 | 3.11 |
665 | 673 | 0.695347 | AGCTCTTCCTCCACCCTTTG | 59.305 | 55.000 | 0.00 | 0.00 | 0.00 | 2.77 |
667 | 675 | 0.322906 | CTCTTCCTCCACCCTTTGCC | 60.323 | 60.000 | 0.00 | 0.00 | 0.00 | 4.52 |
1216 | 1241 | 3.730061 | GCATGAAGAACTTGGCTCGATTG | 60.730 | 47.826 | 0.00 | 0.00 | 0.00 | 2.67 |
1322 | 1361 | 8.990163 | TGAGGTTAGAGAAATTTTGGTAGTTT | 57.010 | 30.769 | 0.00 | 0.00 | 0.00 | 2.66 |
1385 | 1424 | 4.141801 | TGGCCTGTAGTATATTGGACACAC | 60.142 | 45.833 | 3.32 | 0.00 | 30.61 | 3.82 |
1458 | 1497 | 9.051679 | AGGGTTTGAATTTAAGTACAAAAATGC | 57.948 | 29.630 | 0.00 | 0.00 | 34.76 | 3.56 |
1459 | 1498 | 9.051679 | GGGTTTGAATTTAAGTACAAAAATGCT | 57.948 | 29.630 | 10.58 | 0.00 | 34.76 | 3.79 |
1581 | 1635 | 2.479566 | AGAAGCGCTGATGGAAAGAA | 57.520 | 45.000 | 12.58 | 0.00 | 0.00 | 2.52 |
1621 | 1676 | 5.872963 | TGTTATAGTAGAGCCATCTCCGTA | 58.127 | 41.667 | 0.00 | 0.00 | 40.22 | 4.02 |
1765 | 1821 | 9.226345 | GCACAATACTGCATCTATAAAAAGTTC | 57.774 | 33.333 | 0.00 | 0.00 | 37.11 | 3.01 |
1809 | 1865 | 5.712152 | ACTTGTATTTTCCAGAAAGCCAG | 57.288 | 39.130 | 0.00 | 0.00 | 0.00 | 4.85 |
1814 | 1870 | 2.452600 | TTTCCAGAAAGCCAGTGGTT | 57.547 | 45.000 | 11.74 | 0.44 | 32.73 | 3.67 |
1877 | 1933 | 3.969981 | GCAATTGCAAAAATTCACACTGC | 59.030 | 39.130 | 25.36 | 0.00 | 41.59 | 4.40 |
1914 | 1973 | 8.034058 | AGTTTTCTAGCACATGAGTATTTGTC | 57.966 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
2004 | 2064 | 7.414222 | ACATTCTATTGTCATGCAAGGAAAT | 57.586 | 32.000 | 16.42 | 0.00 | 40.86 | 2.17 |
2006 | 2066 | 8.970020 | ACATTCTATTGTCATGCAAGGAAATTA | 58.030 | 29.630 | 16.42 | 0.00 | 40.86 | 1.40 |
2007 | 2067 | 9.459640 | CATTCTATTGTCATGCAAGGAAATTAG | 57.540 | 33.333 | 16.42 | 0.00 | 40.86 | 1.73 |
2008 | 2068 | 7.031226 | TCTATTGTCATGCAAGGAAATTAGC | 57.969 | 36.000 | 0.00 | 0.00 | 40.86 | 3.09 |
2087 | 2151 | 7.980099 | CGTCCTGTACCTTTTAAGATATCAACT | 59.020 | 37.037 | 5.32 | 0.00 | 0.00 | 3.16 |
2093 | 2157 | 9.761504 | GTACCTTTTAAGATATCAACTACTCCC | 57.238 | 37.037 | 5.32 | 0.00 | 0.00 | 4.30 |
2094 | 2158 | 8.625467 | ACCTTTTAAGATATCAACTACTCCCT | 57.375 | 34.615 | 5.32 | 0.00 | 0.00 | 4.20 |
2095 | 2159 | 8.706521 | ACCTTTTAAGATATCAACTACTCCCTC | 58.293 | 37.037 | 5.32 | 0.00 | 0.00 | 4.30 |
2096 | 2160 | 8.151596 | CCTTTTAAGATATCAACTACTCCCTCC | 58.848 | 40.741 | 5.32 | 0.00 | 0.00 | 4.30 |
2097 | 2161 | 6.896021 | TTAAGATATCAACTACTCCCTCCG | 57.104 | 41.667 | 5.32 | 0.00 | 0.00 | 4.63 |
2098 | 2162 | 4.456662 | AGATATCAACTACTCCCTCCGT | 57.543 | 45.455 | 5.32 | 0.00 | 0.00 | 4.69 |
2099 | 2163 | 4.400120 | AGATATCAACTACTCCCTCCGTC | 58.600 | 47.826 | 5.32 | 0.00 | 0.00 | 4.79 |
2100 | 2164 | 1.777941 | ATCAACTACTCCCTCCGTCC | 58.222 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
2101 | 2165 | 0.324091 | TCAACTACTCCCTCCGTCCC | 60.324 | 60.000 | 0.00 | 0.00 | 0.00 | 4.46 |
2102 | 2166 | 0.613853 | CAACTACTCCCTCCGTCCCA | 60.614 | 60.000 | 0.00 | 0.00 | 0.00 | 4.37 |
2103 | 2167 | 0.338814 | AACTACTCCCTCCGTCCCAT | 59.661 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2104 | 2168 | 1.229131 | ACTACTCCCTCCGTCCCATA | 58.771 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2105 | 2169 | 1.572415 | ACTACTCCCTCCGTCCCATAA | 59.428 | 52.381 | 0.00 | 0.00 | 0.00 | 1.90 |
2106 | 2170 | 2.179424 | ACTACTCCCTCCGTCCCATAAT | 59.821 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2107 | 2171 | 1.424638 | ACTCCCTCCGTCCCATAATG | 58.575 | 55.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2108 | 2172 | 1.344087 | ACTCCCTCCGTCCCATAATGT | 60.344 | 52.381 | 0.00 | 0.00 | 0.00 | 2.71 |
2109 | 2173 | 2.090943 | ACTCCCTCCGTCCCATAATGTA | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2110 | 2174 | 2.969950 | CTCCCTCCGTCCCATAATGTAA | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2111 | 2175 | 2.969950 | TCCCTCCGTCCCATAATGTAAG | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
2112 | 2176 | 2.969950 | CCCTCCGTCCCATAATGTAAGA | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2113 | 2177 | 3.244112 | CCCTCCGTCCCATAATGTAAGAC | 60.244 | 52.174 | 0.00 | 0.00 | 0.00 | 3.01 |
2115 | 2179 | 3.025978 | TCCGTCCCATAATGTAAGACGT | 58.974 | 45.455 | 9.63 | 0.00 | 46.62 | 4.34 |
2116 | 2180 | 3.448301 | TCCGTCCCATAATGTAAGACGTT | 59.552 | 43.478 | 9.63 | 0.00 | 46.62 | 3.99 |
2117 | 2181 | 4.081531 | TCCGTCCCATAATGTAAGACGTTT | 60.082 | 41.667 | 9.63 | 0.00 | 46.62 | 3.60 |
2118 | 2182 | 4.632688 | CCGTCCCATAATGTAAGACGTTTT | 59.367 | 41.667 | 9.63 | 0.00 | 46.62 | 2.43 |
2119 | 2183 | 5.122711 | CCGTCCCATAATGTAAGACGTTTTT | 59.877 | 40.000 | 9.63 | 0.00 | 46.62 | 1.94 |
2162 | 2226 | 3.720949 | CGTCTTACATTATGGGACGGA | 57.279 | 47.619 | 20.50 | 2.30 | 43.69 | 4.69 |
2163 | 2227 | 3.639538 | CGTCTTACATTATGGGACGGAG | 58.360 | 50.000 | 20.50 | 2.74 | 43.69 | 4.63 |
2164 | 2228 | 3.552273 | CGTCTTACATTATGGGACGGAGG | 60.552 | 52.174 | 20.50 | 5.87 | 43.69 | 4.30 |
2165 | 2229 | 2.969950 | TCTTACATTATGGGACGGAGGG | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2166 | 2230 | 2.779429 | TACATTATGGGACGGAGGGA | 57.221 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2167 | 2231 | 1.424638 | ACATTATGGGACGGAGGGAG | 58.575 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2216 | 2280 | 6.116126 | ACAGTAACATAGCTTCCTCCATTTC | 58.884 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2309 | 2373 | 4.340950 | TCCTTTTGGTCCAAAGTGATGTTC | 59.659 | 41.667 | 16.47 | 0.00 | 41.38 | 3.18 |
2383 | 2447 | 9.573133 | AGTAAGATCAGTTTGTTTTGAAAACAG | 57.427 | 29.630 | 20.98 | 11.46 | 39.49 | 3.16 |
2397 | 2461 | 6.928979 | TTGAAAACAGATTCGTAGGTTCAA | 57.071 | 33.333 | 0.00 | 0.00 | 32.83 | 2.69 |
2617 | 2681 | 4.833478 | ATAGAAGGTGCAATCACTGACT | 57.167 | 40.909 | 0.00 | 0.00 | 42.72 | 3.41 |
2671 | 2735 | 1.672881 | GCAGCAGGACTTTATTGCGAT | 59.327 | 47.619 | 0.00 | 0.00 | 42.47 | 4.58 |
2779 | 2843 | 5.476945 | TCCAAAGGCTTTTCAACCTAAGATC | 59.523 | 40.000 | 10.36 | 0.00 | 34.31 | 2.75 |
2795 | 2859 | 5.865552 | CCTAAGATCGAAAACGTTCCAAGTA | 59.134 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2809 | 2873 | 4.778534 | TCCAAGTACTCTTAGTGTTCGG | 57.221 | 45.455 | 0.00 | 0.00 | 32.07 | 4.30 |
2837 | 2901 | 7.404980 | AGGTACATTCTTTCCCCTTGTAGAATA | 59.595 | 37.037 | 0.00 | 0.00 | 35.70 | 1.75 |
2927 | 2991 | 4.712476 | AGAAACATCAGTTCTGCACTTCT | 58.288 | 39.130 | 0.00 | 0.00 | 36.84 | 2.85 |
2931 | 2995 | 3.324846 | ACATCAGTTCTGCACTTCTACCA | 59.675 | 43.478 | 0.00 | 0.00 | 30.92 | 3.25 |
2954 | 3018 | 7.148306 | ACCATCGTTTTTATGATGTTCCTACAC | 60.148 | 37.037 | 0.00 | 0.00 | 40.25 | 2.90 |
2993 | 3058 | 7.041644 | TGTGTTACAACTTACAAGGTATGCTTC | 60.042 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
3016 | 3081 | 1.308998 | ACACGCCTATTAAGCATGCC | 58.691 | 50.000 | 15.66 | 0.00 | 0.00 | 4.40 |
3049 | 3114 | 7.848128 | TGTAAGTTCGAAGGAATCCTAGAATT | 58.152 | 34.615 | 18.51 | 13.65 | 34.63 | 2.17 |
3102 | 3167 | 8.148999 | ACTTAAAGAACCTATTCAAGAACGAGT | 58.851 | 33.333 | 0.00 | 0.00 | 37.29 | 4.18 |
3103 | 3168 | 9.635520 | CTTAAAGAACCTATTCAAGAACGAGTA | 57.364 | 33.333 | 0.00 | 0.00 | 37.29 | 2.59 |
3105 | 3170 | 7.886405 | AAGAACCTATTCAAGAACGAGTAAC | 57.114 | 36.000 | 0.00 | 0.00 | 37.29 | 2.50 |
3106 | 3171 | 6.989659 | AGAACCTATTCAAGAACGAGTAACA | 58.010 | 36.000 | 0.00 | 0.00 | 37.29 | 2.41 |
3107 | 3172 | 7.612677 | AGAACCTATTCAAGAACGAGTAACAT | 58.387 | 34.615 | 0.00 | 0.00 | 37.29 | 2.71 |
3108 | 3173 | 7.545965 | AGAACCTATTCAAGAACGAGTAACATG | 59.454 | 37.037 | 0.00 | 0.00 | 37.29 | 3.21 |
3109 | 3174 | 6.931838 | ACCTATTCAAGAACGAGTAACATGA | 58.068 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3110 | 3175 | 7.036220 | ACCTATTCAAGAACGAGTAACATGAG | 58.964 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
3111 | 3176 | 7.093902 | ACCTATTCAAGAACGAGTAACATGAGA | 60.094 | 37.037 | 0.00 | 0.00 | 0.00 | 3.27 |
3112 | 3177 | 7.923344 | CCTATTCAAGAACGAGTAACATGAGAT | 59.077 | 37.037 | 0.00 | 0.00 | 0.00 | 2.75 |
3113 | 3178 | 9.307121 | CTATTCAAGAACGAGTAACATGAGATT | 57.693 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
3153 | 3218 | 7.585210 | CGAACATGAGCATATTTGTATGAACTG | 59.415 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
3203 | 3268 | 7.016694 | TTGATCAACAAAGCACATTGCATGAT | 61.017 | 34.615 | 3.38 | 13.58 | 40.21 | 2.45 |
3405 | 3575 | 6.560253 | ACTATTAACCAAGTGCAGAAACTG | 57.440 | 37.500 | 0.00 | 0.00 | 34.12 | 3.16 |
3650 | 3820 | 0.536460 | TGAAAACCGGCTCCACTTCC | 60.536 | 55.000 | 0.00 | 0.00 | 0.00 | 3.46 |
3679 | 3849 | 4.681421 | CACATCTGTGCCAGACGT | 57.319 | 55.556 | 7.00 | 3.01 | 43.63 | 4.34 |
3692 | 3862 | 4.092968 | GTGCCAGACGTTTTATTCCTAGTG | 59.907 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
3730 | 3900 | 0.179020 | GATGATCATTCCCGTGCCCA | 60.179 | 55.000 | 10.14 | 0.00 | 0.00 | 5.36 |
3752 | 3922 | 0.172803 | GGTGTGTAGGCGACCAGTAG | 59.827 | 60.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3835 | 4005 | 1.067295 | AGGCCATGAGTCACTTTCCA | 58.933 | 50.000 | 5.01 | 0.00 | 0.00 | 3.53 |
3892 | 4070 | 6.303839 | TGGGGCATTATACTCTACCAATTTC | 58.696 | 40.000 | 0.00 | 0.00 | 0.00 | 2.17 |
3906 | 4084 | 5.310720 | ACCAATTTCTTCATTACCGAAGC | 57.689 | 39.130 | 0.00 | 0.00 | 41.84 | 3.86 |
3931 | 4109 | 5.163622 | CCAACATTATCAGTTCCGCTTCATT | 60.164 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3933 | 4111 | 4.336433 | ACATTATCAGTTCCGCTTCATTGG | 59.664 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
3966 | 4144 | 4.305539 | TGATTGCTTCCTTTCAGATGGA | 57.694 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
3972 | 4150 | 1.821216 | TCCTTTCAGATGGAAACGCC | 58.179 | 50.000 | 0.00 | 0.00 | 40.51 | 5.68 |
4549 | 4729 | 5.825151 | AGAGGTAATTTCAAGATTAGCTGGC | 59.175 | 40.000 | 12.43 | 2.25 | 45.37 | 4.85 |
4645 | 4825 | 6.486993 | GGTAGTATCCTTTTATTTCTGCCTGG | 59.513 | 42.308 | 0.00 | 0.00 | 0.00 | 4.45 |
4767 | 4953 | 3.007614 | TGTTCTAGGCTAACCACTTGGAC | 59.992 | 47.826 | 1.14 | 0.00 | 39.06 | 4.02 |
4873 | 5059 | 3.874392 | ATGCTGGACTGGTTAATTTGC | 57.126 | 42.857 | 0.00 | 0.00 | 0.00 | 3.68 |
5131 | 5317 | 6.347644 | CGAAAGAACAGATGTCAATGCAGTTA | 60.348 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
5167 | 5353 | 7.639039 | CCTCTTTCGTGCATTGCTTATTAATA | 58.361 | 34.615 | 10.49 | 0.00 | 0.00 | 0.98 |
5353 | 5539 | 0.530744 | ATTCCGTTAGCGAGCACTCA | 59.469 | 50.000 | 0.00 | 0.00 | 41.33 | 3.41 |
5373 | 5559 | 7.182761 | CACTCAAATTAGGCGAACTATTCAAG | 58.817 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
5408 | 5594 | 9.797556 | GTGAAAAGATAAAACTACCTTTGTGTT | 57.202 | 29.630 | 0.00 | 0.00 | 0.00 | 3.32 |
5435 | 5621 | 6.540914 | AGGAACAGAACATCTTTTCGTTTGTA | 59.459 | 34.615 | 1.46 | 0.00 | 34.81 | 2.41 |
5583 | 5781 | 8.749026 | AGAACTTCTGAGATATCATTTGCATT | 57.251 | 30.769 | 5.32 | 0.00 | 0.00 | 3.56 |
5655 | 5853 | 8.846943 | TGTAGAAGAATAACTTTGCTTCATCA | 57.153 | 30.769 | 0.00 | 0.00 | 39.27 | 3.07 |
5696 | 5894 | 5.888412 | ACGATCACTTTGTTGCAAATTTC | 57.112 | 34.783 | 0.00 | 0.00 | 0.00 | 2.17 |
5701 | 5899 | 6.419980 | TCACTTTGTTGCAAATTTCAAAGG | 57.580 | 33.333 | 29.07 | 21.83 | 45.97 | 3.11 |
5769 | 5970 | 7.933577 | TGTCGATCCAGATTTATTTTGAGCTAT | 59.066 | 33.333 | 0.00 | 0.00 | 0.00 | 2.97 |
6043 | 6244 | 5.122869 | CACCGCATTTGGATCAGATTATAGG | 59.877 | 44.000 | 0.00 | 0.00 | 0.00 | 2.57 |
6065 | 6266 | 5.482878 | AGGACTTCATTTCCATCAGCATTTT | 59.517 | 36.000 | 0.00 | 0.00 | 35.33 | 1.82 |
6223 | 6424 | 6.037940 | CCTTCCATATTGATGACTTGACACTG | 59.962 | 42.308 | 0.00 | 0.00 | 34.73 | 3.66 |
6238 | 6439 | 6.040729 | ACTTGACACTGATCTGAGATATCCAG | 59.959 | 42.308 | 6.60 | 12.51 | 0.00 | 3.86 |
6256 | 6457 | 2.812011 | CCAGCTTGTTACAGTTGGGTAC | 59.188 | 50.000 | 8.81 | 0.00 | 40.59 | 3.34 |
6263 | 6464 | 4.207955 | TGTTACAGTTGGGTACATTGCAA | 58.792 | 39.130 | 0.00 | 0.00 | 0.00 | 4.08 |
6310 | 6511 | 4.821260 | ACTTGGTTTTCAAATTGGCCATTC | 59.179 | 37.500 | 6.09 | 0.00 | 34.56 | 2.67 |
6315 | 6516 | 7.056635 | TGGTTTTCAAATTGGCCATTCTAAAA | 58.943 | 30.769 | 6.09 | 7.80 | 0.00 | 1.52 |
6395 | 6596 | 7.054855 | GATGAAATCAGAACTACACACAGTC | 57.945 | 40.000 | 0.00 | 0.00 | 44.70 | 3.51 |
6397 | 6598 | 6.216569 | TGAAATCAGAACTACACACAGTCTC | 58.783 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
6442 | 6643 | 1.269958 | TCATGACTCCAGGTGGTGAG | 58.730 | 55.000 | 5.09 | 0.00 | 36.34 | 3.51 |
6456 | 6657 | 1.011451 | GGTGAGCTCTTGTCGAGTGC | 61.011 | 60.000 | 16.19 | 6.08 | 43.51 | 4.40 |
6552 | 6753 | 1.133790 | GCATGATGTTTCAGCCCAGAC | 59.866 | 52.381 | 0.00 | 0.00 | 34.73 | 3.51 |
6580 | 6816 | 8.367156 | AGATACACTGTAAACCCTAACGTTTTA | 58.633 | 33.333 | 5.91 | 0.00 | 37.20 | 1.52 |
6614 | 6860 | 4.949238 | TCACATGTACTTGCAGCCAATAAT | 59.051 | 37.500 | 8.58 | 0.00 | 0.00 | 1.28 |
6644 | 6890 | 2.636647 | TGACAGAAGCCAACACATCA | 57.363 | 45.000 | 0.00 | 0.00 | 0.00 | 3.07 |
6714 | 6960 | 4.717313 | GCCCCGGTGTGAGTTCCC | 62.717 | 72.222 | 0.00 | 0.00 | 0.00 | 3.97 |
6785 | 7031 | 0.969894 | CGAGAACAAGTGACCCCTCT | 59.030 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
6832 | 7079 | 0.440371 | GTCAGCGTGACTGCTAAAGC | 59.560 | 55.000 | 9.86 | 0.00 | 45.23 | 3.51 |
6981 | 7229 | 7.862675 | AGGTGTAAAAGTAGGCAAAGATAGAT | 58.137 | 34.615 | 0.00 | 0.00 | 0.00 | 1.98 |
7084 | 7332 | 0.257328 | TTTGGAGTTGGTGGTGAGCA | 59.743 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
7087 | 7335 | 1.961277 | GAGTTGGTGGTGAGCACGG | 60.961 | 63.158 | 8.82 | 0.00 | 0.00 | 4.94 |
7170 | 7418 | 7.396339 | TGTTCTTATACCTGTTTCTCTGCTAGA | 59.604 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
7254 | 7502 | 8.893727 | AGCTGTTTCGCAAATTAAGTTATCTAT | 58.106 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
7341 | 7591 | 1.080366 | TCGGCGTGAACGTTAGCAT | 60.080 | 52.632 | 19.70 | 0.00 | 42.22 | 3.79 |
7380 | 7630 | 1.597854 | CTCCAAGCCTCGCACAACA | 60.598 | 57.895 | 0.00 | 0.00 | 0.00 | 3.33 |
7418 | 7668 | 2.097825 | GGCAACATGAGAGCCTGAATT | 58.902 | 47.619 | 16.71 | 0.00 | 44.92 | 2.17 |
7425 | 7675 | 1.134699 | TGAGAGCCTGAATTACGCTGG | 60.135 | 52.381 | 0.00 | 0.00 | 31.61 | 4.85 |
7429 | 7679 | 1.663695 | GCCTGAATTACGCTGGCTTA | 58.336 | 50.000 | 0.00 | 0.00 | 44.20 | 3.09 |
7445 | 7695 | 2.738314 | GGCTTAGCACAAAAATTGCCTG | 59.262 | 45.455 | 6.53 | 0.00 | 41.18 | 4.85 |
7475 | 7725 | 3.057245 | TGCACATCCTATACTCGAGATGC | 60.057 | 47.826 | 21.68 | 13.33 | 39.79 | 3.91 |
7484 | 7734 | 4.640789 | ATACTCGAGATGCGTTTTCTCT | 57.359 | 40.909 | 21.68 | 0.00 | 41.80 | 3.10 |
7489 | 7739 | 2.923655 | CGAGATGCGTTTTCTCTGCTTA | 59.076 | 45.455 | 8.90 | 0.00 | 37.96 | 3.09 |
7490 | 7740 | 3.367932 | CGAGATGCGTTTTCTCTGCTTAA | 59.632 | 43.478 | 8.90 | 0.00 | 37.96 | 1.85 |
7491 | 7741 | 4.491602 | CGAGATGCGTTTTCTCTGCTTAAG | 60.492 | 45.833 | 0.00 | 0.00 | 37.96 | 1.85 |
7586 | 7837 | 9.762933 | ATTTGGTGCAAAAATATGACCATATAC | 57.237 | 29.630 | 6.80 | 0.00 | 36.90 | 1.47 |
7587 | 7838 | 6.964908 | TGGTGCAAAAATATGACCATATACG | 58.035 | 36.000 | 3.22 | 0.00 | 33.86 | 3.06 |
7624 | 7875 | 3.110358 | GCCAAGTTGTTACGGTTTGAAC | 58.890 | 45.455 | 1.45 | 0.00 | 0.00 | 3.18 |
7662 | 7913 | 3.383620 | TTCATGCTGCACCGAATTTTT | 57.616 | 38.095 | 3.57 | 0.00 | 0.00 | 1.94 |
7713 | 7965 | 7.254137 | GGTTGTATTTTTGCACCAAATTTTGT | 58.746 | 30.769 | 8.26 | 0.00 | 33.19 | 2.83 |
7726 | 7978 | 8.647226 | GCACCAAATTTTGTATGAATAGTTGTC | 58.353 | 33.333 | 8.26 | 0.00 | 0.00 | 3.18 |
7745 | 7997 | 4.383173 | TGTCATAGCAGCATGATGTTAGG | 58.617 | 43.478 | 13.32 | 12.84 | 39.69 | 2.69 |
7760 | 8012 | 5.906113 | ATGTTAGGCATCTCGAGTATAGG | 57.094 | 43.478 | 13.13 | 0.00 | 30.67 | 2.57 |
7761 | 8013 | 4.079970 | TGTTAGGCATCTCGAGTATAGGG | 58.920 | 47.826 | 13.13 | 0.00 | 0.00 | 3.53 |
7762 | 8014 | 1.551452 | AGGCATCTCGAGTATAGGGC | 58.449 | 55.000 | 13.13 | 7.53 | 0.00 | 5.19 |
7763 | 8015 | 0.171455 | GGCATCTCGAGTATAGGGCG | 59.829 | 60.000 | 13.13 | 0.00 | 0.00 | 6.13 |
7764 | 8016 | 1.166129 | GCATCTCGAGTATAGGGCGA | 58.834 | 55.000 | 13.13 | 0.00 | 0.00 | 5.54 |
7769 | 8021 | 1.880271 | TCGAGTATAGGGCGAGAGTG | 58.120 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
7770 | 8022 | 0.875728 | CGAGTATAGGGCGAGAGTGG | 59.124 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
7771 | 8023 | 1.542767 | CGAGTATAGGGCGAGAGTGGA | 60.543 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
7772 | 8024 | 1.881324 | GAGTATAGGGCGAGAGTGGAC | 59.119 | 57.143 | 0.00 | 0.00 | 0.00 | 4.02 |
7773 | 8025 | 1.495574 | AGTATAGGGCGAGAGTGGACT | 59.504 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
7774 | 8026 | 1.881324 | GTATAGGGCGAGAGTGGACTC | 59.119 | 57.143 | 0.00 | 0.00 | 43.17 | 3.36 |
7783 | 8035 | 1.304217 | GAGTGGACTCGGGTGGAGA | 60.304 | 63.158 | 0.00 | 0.00 | 46.23 | 3.71 |
7784 | 8036 | 0.898789 | GAGTGGACTCGGGTGGAGAA | 60.899 | 60.000 | 0.00 | 0.00 | 46.23 | 2.87 |
7785 | 8037 | 0.252284 | AGTGGACTCGGGTGGAGAAT | 60.252 | 55.000 | 0.00 | 0.00 | 46.23 | 2.40 |
7786 | 8038 | 1.006758 | AGTGGACTCGGGTGGAGAATA | 59.993 | 52.381 | 0.00 | 0.00 | 46.23 | 1.75 |
7787 | 8039 | 2.040178 | GTGGACTCGGGTGGAGAATAT | 58.960 | 52.381 | 0.00 | 0.00 | 46.23 | 1.28 |
7788 | 8040 | 2.036089 | GTGGACTCGGGTGGAGAATATC | 59.964 | 54.545 | 0.00 | 0.00 | 46.23 | 1.63 |
7789 | 8041 | 2.091278 | TGGACTCGGGTGGAGAATATCT | 60.091 | 50.000 | 0.00 | 0.00 | 46.23 | 1.98 |
7790 | 8042 | 2.297597 | GGACTCGGGTGGAGAATATCTG | 59.702 | 54.545 | 0.00 | 0.00 | 46.23 | 2.90 |
7791 | 8043 | 1.689273 | ACTCGGGTGGAGAATATCTGC | 59.311 | 52.381 | 0.00 | 0.00 | 46.23 | 4.26 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
31 | 32 | 7.867403 | CCCAACTTCGTACTAACTTTGTACTAA | 59.133 | 37.037 | 10.52 | 6.27 | 38.39 | 2.24 |
32 | 33 | 7.014230 | ACCCAACTTCGTACTAACTTTGTACTA | 59.986 | 37.037 | 10.52 | 0.00 | 38.39 | 1.82 |
33 | 34 | 6.183360 | ACCCAACTTCGTACTAACTTTGTACT | 60.183 | 38.462 | 10.52 | 0.00 | 38.39 | 2.73 |
34 | 35 | 5.985530 | ACCCAACTTCGTACTAACTTTGTAC | 59.014 | 40.000 | 4.07 | 4.07 | 37.50 | 2.90 |
36 | 37 | 5.027293 | ACCCAACTTCGTACTAACTTTGT | 57.973 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
37 | 38 | 5.051816 | TGACCCAACTTCGTACTAACTTTG | 58.948 | 41.667 | 0.00 | 0.00 | 0.00 | 2.77 |
38 | 39 | 5.280654 | TGACCCAACTTCGTACTAACTTT | 57.719 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
40 | 41 | 4.771054 | AGATGACCCAACTTCGTACTAACT | 59.229 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
41 | 42 | 5.069501 | AGATGACCCAACTTCGTACTAAC | 57.930 | 43.478 | 0.00 | 0.00 | 0.00 | 2.34 |
42 | 43 | 7.414222 | AATAGATGACCCAACTTCGTACTAA | 57.586 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
43 | 44 | 7.414222 | AAATAGATGACCCAACTTCGTACTA | 57.586 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
44 | 45 | 5.934402 | AATAGATGACCCAACTTCGTACT | 57.066 | 39.130 | 0.00 | 0.00 | 0.00 | 2.73 |
45 | 46 | 6.183360 | CCAAAATAGATGACCCAACTTCGTAC | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 3.67 |
47 | 48 | 4.700213 | CCAAAATAGATGACCCAACTTCGT | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
49 | 50 | 6.621613 | GTTCCAAAATAGATGACCCAACTTC | 58.378 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
50 | 51 | 5.183140 | CGTTCCAAAATAGATGACCCAACTT | 59.817 | 40.000 | 0.00 | 0.00 | 0.00 | 2.66 |
51 | 52 | 4.700213 | CGTTCCAAAATAGATGACCCAACT | 59.300 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
52 | 53 | 4.142469 | CCGTTCCAAAATAGATGACCCAAC | 60.142 | 45.833 | 0.00 | 0.00 | 0.00 | 3.77 |
54 | 55 | 3.264706 | TCCGTTCCAAAATAGATGACCCA | 59.735 | 43.478 | 0.00 | 0.00 | 0.00 | 4.51 |
55 | 56 | 3.877508 | CTCCGTTCCAAAATAGATGACCC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.46 |
56 | 57 | 3.877508 | CCTCCGTTCCAAAATAGATGACC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
57 | 58 | 3.877508 | CCCTCCGTTCCAAAATAGATGAC | 59.122 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
58 | 59 | 3.778075 | TCCCTCCGTTCCAAAATAGATGA | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
59 | 60 | 4.130118 | CTCCCTCCGTTCCAAAATAGATG | 58.870 | 47.826 | 0.00 | 0.00 | 0.00 | 2.90 |
61 | 62 | 3.178865 | ACTCCCTCCGTTCCAAAATAGA | 58.821 | 45.455 | 0.00 | 0.00 | 0.00 | 1.98 |
62 | 63 | 3.629142 | ACTCCCTCCGTTCCAAAATAG | 57.371 | 47.619 | 0.00 | 0.00 | 0.00 | 1.73 |
63 | 64 | 3.453353 | CCTACTCCCTCCGTTCCAAAATA | 59.547 | 47.826 | 0.00 | 0.00 | 0.00 | 1.40 |
64 | 65 | 2.238898 | CCTACTCCCTCCGTTCCAAAAT | 59.761 | 50.000 | 0.00 | 0.00 | 0.00 | 1.82 |
66 | 67 | 1.272807 | CCTACTCCCTCCGTTCCAAA | 58.727 | 55.000 | 0.00 | 0.00 | 0.00 | 3.28 |
68 | 69 | 1.002069 | TACCTACTCCCTCCGTTCCA | 58.998 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
69 | 70 | 1.689984 | CTACCTACTCCCTCCGTTCC | 58.310 | 60.000 | 0.00 | 0.00 | 0.00 | 3.62 |
70 | 71 | 1.064091 | ACCTACCTACTCCCTCCGTTC | 60.064 | 57.143 | 0.00 | 0.00 | 0.00 | 3.95 |
71 | 72 | 1.006020 | ACCTACCTACTCCCTCCGTT | 58.994 | 55.000 | 0.00 | 0.00 | 0.00 | 4.44 |
72 | 73 | 0.258194 | CACCTACCTACTCCCTCCGT | 59.742 | 60.000 | 0.00 | 0.00 | 0.00 | 4.69 |
73 | 74 | 1.108132 | GCACCTACCTACTCCCTCCG | 61.108 | 65.000 | 0.00 | 0.00 | 0.00 | 4.63 |
74 | 75 | 1.108132 | CGCACCTACCTACTCCCTCC | 61.108 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
75 | 76 | 1.108132 | CCGCACCTACCTACTCCCTC | 61.108 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
76 | 77 | 1.076192 | CCGCACCTACCTACTCCCT | 60.076 | 63.158 | 0.00 | 0.00 | 0.00 | 4.20 |
78 | 79 | 0.685458 | TTCCCGCACCTACCTACTCC | 60.685 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
79 | 80 | 1.188863 | TTTCCCGCACCTACCTACTC | 58.811 | 55.000 | 0.00 | 0.00 | 0.00 | 2.59 |
80 | 81 | 1.648116 | TTTTCCCGCACCTACCTACT | 58.352 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
101 | 102 | 5.538849 | TGCCATTATGCATCATTGTTCAT | 57.461 | 34.783 | 0.19 | 0.00 | 36.04 | 2.57 |
102 | 103 | 5.340439 | TTGCCATTATGCATCATTGTTCA | 57.660 | 34.783 | 0.19 | 0.00 | 41.70 | 3.18 |
138 | 140 | 4.927422 | TCCCAGAAACGAACAACAAATTC | 58.073 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
269 | 275 | 2.301009 | GGCCATTGATTTCCCATCCATC | 59.699 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
312 | 319 | 6.769608 | ATTTTCCGCTGAAACTTTCAAATC | 57.230 | 33.333 | 2.45 | 0.00 | 40.12 | 2.17 |
532 | 540 | 2.599848 | CGTGCCGATGCTGCTTATTTAC | 60.600 | 50.000 | 0.00 | 0.00 | 38.71 | 2.01 |
632 | 640 | 2.749044 | AGCTGATGGGCAACGCAG | 60.749 | 61.111 | 0.00 | 0.00 | 35.02 | 5.18 |
667 | 675 | 4.179599 | GGGAGGAGGAGGAGGGGG | 62.180 | 77.778 | 0.00 | 0.00 | 0.00 | 5.40 |
1012 | 1025 | 3.289834 | CTGGGCGTTGTGCTGCTT | 61.290 | 61.111 | 0.00 | 0.00 | 45.43 | 3.91 |
1086 | 1108 | 2.725312 | GGCCGAGTGCATCAGAGGA | 61.725 | 63.158 | 0.00 | 0.00 | 43.89 | 3.71 |
1087 | 1109 | 2.202987 | GGCCGAGTGCATCAGAGG | 60.203 | 66.667 | 0.00 | 0.00 | 43.89 | 3.69 |
1088 | 1110 | 1.521010 | CTGGCCGAGTGCATCAGAG | 60.521 | 63.158 | 0.00 | 0.00 | 43.89 | 3.35 |
1089 | 1111 | 2.580815 | CTGGCCGAGTGCATCAGA | 59.419 | 61.111 | 0.00 | 0.00 | 43.89 | 3.27 |
1090 | 1112 | 2.513204 | CCTGGCCGAGTGCATCAG | 60.513 | 66.667 | 0.00 | 0.00 | 43.89 | 2.90 |
1114 | 1139 | 3.707793 | CTTACATAGGCGTGAAGGAGAC | 58.292 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1216 | 1241 | 6.077197 | GGCAAAATAAAATTCAAAACGCCTC | 58.923 | 36.000 | 0.00 | 0.00 | 0.00 | 4.70 |
1267 | 1294 | 2.119495 | TCCTTCCTGGCTCCATAAGAC | 58.881 | 52.381 | 10.85 | 0.00 | 35.26 | 3.01 |
1268 | 1295 | 2.568546 | TCCTTCCTGGCTCCATAAGA | 57.431 | 50.000 | 10.85 | 0.00 | 35.26 | 2.10 |
1322 | 1361 | 5.937540 | ACGTCCACAAACATATCAAATCTCA | 59.062 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1336 | 1375 | 2.299013 | AGACTAGCATCACGTCCACAAA | 59.701 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
1385 | 1424 | 2.417924 | CCACAGCCTTGTCACTAGCTAG | 60.418 | 54.545 | 19.44 | 19.44 | 34.62 | 3.42 |
1458 | 1497 | 7.041721 | TCAATGCATACCACTTCAAGTAGTAG | 58.958 | 38.462 | 0.00 | 0.00 | 26.59 | 2.57 |
1459 | 1498 | 6.941857 | TCAATGCATACCACTTCAAGTAGTA | 58.058 | 36.000 | 0.00 | 0.00 | 27.62 | 1.82 |
1460 | 1499 | 5.804639 | TCAATGCATACCACTTCAAGTAGT | 58.195 | 37.500 | 0.00 | 0.00 | 0.00 | 2.73 |
1621 | 1676 | 8.670521 | ATTTTGTTTCCCTTAAGAATGGAGAT | 57.329 | 30.769 | 3.36 | 0.00 | 0.00 | 2.75 |
1650 | 1705 | 7.604927 | TGGTTCTACAAGTACCAATAACATCAC | 59.395 | 37.037 | 3.24 | 0.00 | 41.75 | 3.06 |
1798 | 1854 | 1.691196 | TTCAACCACTGGCTTTCTGG | 58.309 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1809 | 1865 | 7.227910 | TGGAGTAACACTCTTAATTTCAACCAC | 59.772 | 37.037 | 6.30 | 0.00 | 44.46 | 4.16 |
1814 | 1870 | 6.833041 | TGGTGGAGTAACACTCTTAATTTCA | 58.167 | 36.000 | 6.30 | 0.00 | 44.46 | 2.69 |
1868 | 1924 | 2.638480 | ACAGCTTTAGGCAGTGTGAA | 57.362 | 45.000 | 0.00 | 0.00 | 44.79 | 3.18 |
1877 | 1933 | 4.997395 | TGCTAGAAAACTCACAGCTTTAGG | 59.003 | 41.667 | 0.00 | 0.00 | 33.38 | 2.69 |
1893 | 1949 | 9.151471 | GTAAAGACAAATACTCATGTGCTAGAA | 57.849 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
2004 | 2064 | 8.815141 | TTAGTTAATCACTAACACAACGCTAA | 57.185 | 30.769 | 0.00 | 0.00 | 42.19 | 3.09 |
2006 | 2066 | 7.440255 | AGTTTAGTTAATCACTAACACAACGCT | 59.560 | 33.333 | 0.00 | 0.00 | 45.97 | 5.07 |
2007 | 2067 | 7.529519 | CAGTTTAGTTAATCACTAACACAACGC | 59.470 | 37.037 | 0.00 | 0.00 | 45.97 | 4.84 |
2008 | 2068 | 8.545420 | ACAGTTTAGTTAATCACTAACACAACG | 58.455 | 33.333 | 0.00 | 0.00 | 45.97 | 4.10 |
2087 | 2151 | 2.090943 | ACATTATGGGACGGAGGGAGTA | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2088 | 2152 | 1.344087 | ACATTATGGGACGGAGGGAGT | 60.344 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
2089 | 2153 | 1.424638 | ACATTATGGGACGGAGGGAG | 58.575 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2090 | 2154 | 2.779429 | TACATTATGGGACGGAGGGA | 57.221 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
2091 | 2155 | 2.969950 | TCTTACATTATGGGACGGAGGG | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2092 | 2156 | 3.552273 | CGTCTTACATTATGGGACGGAGG | 60.552 | 52.174 | 20.50 | 5.87 | 43.69 | 4.30 |
2093 | 2157 | 3.639538 | CGTCTTACATTATGGGACGGAG | 58.360 | 50.000 | 20.50 | 2.74 | 43.69 | 4.63 |
2094 | 2158 | 3.720949 | CGTCTTACATTATGGGACGGA | 57.279 | 47.619 | 20.50 | 2.30 | 43.69 | 4.69 |
2137 | 2201 | 5.122711 | CCGTCCCATAATGTAAGACGTTTTT | 59.877 | 40.000 | 9.63 | 0.00 | 46.62 | 1.94 |
2138 | 2202 | 4.632688 | CCGTCCCATAATGTAAGACGTTTT | 59.367 | 41.667 | 9.63 | 0.00 | 46.62 | 2.43 |
2139 | 2203 | 4.081531 | TCCGTCCCATAATGTAAGACGTTT | 60.082 | 41.667 | 9.63 | 0.00 | 46.62 | 3.60 |
2140 | 2204 | 3.448301 | TCCGTCCCATAATGTAAGACGTT | 59.552 | 43.478 | 9.63 | 0.00 | 46.62 | 3.99 |
2141 | 2205 | 3.025978 | TCCGTCCCATAATGTAAGACGT | 58.974 | 45.455 | 9.63 | 0.00 | 46.62 | 4.34 |
2143 | 2207 | 3.244112 | CCCTCCGTCCCATAATGTAAGAC | 60.244 | 52.174 | 0.00 | 0.00 | 0.00 | 3.01 |
2144 | 2208 | 2.969950 | CCCTCCGTCCCATAATGTAAGA | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2145 | 2209 | 2.969950 | TCCCTCCGTCCCATAATGTAAG | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 2.34 |
2146 | 2210 | 2.969950 | CTCCCTCCGTCCCATAATGTAA | 59.030 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
2147 | 2211 | 2.090943 | ACTCCCTCCGTCCCATAATGTA | 60.091 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
2148 | 2212 | 1.344087 | ACTCCCTCCGTCCCATAATGT | 60.344 | 52.381 | 0.00 | 0.00 | 0.00 | 2.71 |
2149 | 2213 | 1.424638 | ACTCCCTCCGTCCCATAATG | 58.575 | 55.000 | 0.00 | 0.00 | 0.00 | 1.90 |
2150 | 2214 | 2.449730 | TCTACTCCCTCCGTCCCATAAT | 59.550 | 50.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2151 | 2215 | 1.854939 | TCTACTCCCTCCGTCCCATAA | 59.145 | 52.381 | 0.00 | 0.00 | 0.00 | 1.90 |
2152 | 2216 | 1.526315 | TCTACTCCCTCCGTCCCATA | 58.474 | 55.000 | 0.00 | 0.00 | 0.00 | 2.74 |
2153 | 2217 | 0.861155 | ATCTACTCCCTCCGTCCCAT | 59.139 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2154 | 2218 | 1.424302 | CTATCTACTCCCTCCGTCCCA | 59.576 | 57.143 | 0.00 | 0.00 | 0.00 | 4.37 |
2155 | 2219 | 1.272037 | CCTATCTACTCCCTCCGTCCC | 60.272 | 61.905 | 0.00 | 0.00 | 0.00 | 4.46 |
2156 | 2220 | 1.704070 | TCCTATCTACTCCCTCCGTCC | 59.296 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
2157 | 2221 | 3.505480 | TTCCTATCTACTCCCTCCGTC | 57.495 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
2158 | 2222 | 5.312708 | TCTTATTCCTATCTACTCCCTCCGT | 59.687 | 44.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2159 | 2223 | 5.817784 | TCTTATTCCTATCTACTCCCTCCG | 58.182 | 45.833 | 0.00 | 0.00 | 0.00 | 4.63 |
2160 | 2224 | 7.415086 | TCATCTTATTCCTATCTACTCCCTCC | 58.585 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
2161 | 2225 | 9.131791 | GATCATCTTATTCCTATCTACTCCCTC | 57.868 | 40.741 | 0.00 | 0.00 | 0.00 | 4.30 |
2162 | 2226 | 8.628281 | TGATCATCTTATTCCTATCTACTCCCT | 58.372 | 37.037 | 0.00 | 0.00 | 0.00 | 4.20 |
2163 | 2227 | 8.830915 | TGATCATCTTATTCCTATCTACTCCC | 57.169 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
2204 | 2268 | 2.310052 | AGGACAAGGGAAATGGAGGAAG | 59.690 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
2216 | 2280 | 4.778213 | TCTCCATTAATGAGGACAAGGG | 57.222 | 45.455 | 17.23 | 0.00 | 0.00 | 3.95 |
2309 | 2373 | 6.197096 | GCTTCATATTTTTGCCAATGACTACG | 59.803 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
2383 | 2447 | 5.122396 | AGCATGAAAGTTGAACCTACGAATC | 59.878 | 40.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2397 | 2461 | 7.442062 | CCCAAAATAAAACAAGAGCATGAAAGT | 59.558 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
2671 | 2735 | 4.056740 | CACATTGTTTACAATTGCAGCCA | 58.943 | 39.130 | 5.05 | 0.00 | 43.48 | 4.75 |
2779 | 2843 | 5.689068 | ACTAAGAGTACTTGGAACGTTTTCG | 59.311 | 40.000 | 0.46 | 0.00 | 41.77 | 3.46 |
2795 | 2859 | 4.147321 | TGTACCTTCCGAACACTAAGAGT | 58.853 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
2809 | 2873 | 4.663334 | ACAAGGGGAAAGAATGTACCTTC | 58.337 | 43.478 | 2.91 | 2.91 | 36.25 | 3.46 |
2837 | 2901 | 9.448438 | TCTACTGTTGTATGATGCATTTAAACT | 57.552 | 29.630 | 0.00 | 0.00 | 0.00 | 2.66 |
2888 | 2952 | 9.681692 | TGATGTTTCTTATGTGTCAAAATTCAG | 57.318 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
2927 | 2991 | 8.041919 | TGTAGGAACATCATAAAAACGATGGTA | 58.958 | 33.333 | 0.00 | 0.00 | 39.65 | 3.25 |
2931 | 2995 | 6.814644 | TCGTGTAGGAACATCATAAAAACGAT | 59.185 | 34.615 | 0.00 | 0.00 | 38.08 | 3.73 |
2968 | 3033 | 6.796705 | AGCATACCTTGTAAGTTGTAACAC | 57.203 | 37.500 | 0.00 | 0.00 | 0.00 | 3.32 |
2985 | 3050 | 2.295253 | AGGCGTGTACAGAAGCATAC | 57.705 | 50.000 | 16.50 | 3.48 | 0.00 | 2.39 |
2993 | 3058 | 3.059597 | GCATGCTTAATAGGCGTGTACAG | 60.060 | 47.826 | 16.21 | 0.00 | 45.32 | 2.74 |
3016 | 3081 | 2.921754 | CCTTCGAACTTACAGCCTTACG | 59.078 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3049 | 3114 | 0.994247 | ATGGACTGTCCTTGGCATCA | 59.006 | 50.000 | 26.03 | 5.09 | 37.46 | 3.07 |
3178 | 3243 | 4.056092 | TGCAATGTGCTTTGTTGATCAA | 57.944 | 36.364 | 3.38 | 3.38 | 45.31 | 2.57 |
3186 | 3251 | 7.297229 | TCAAATAATCATGCAATGTGCTTTG | 57.703 | 32.000 | 0.00 | 0.00 | 46.80 | 2.77 |
3638 | 3808 | 1.078848 | CAAGGAGGAAGTGGAGCCG | 60.079 | 63.158 | 0.00 | 0.00 | 0.00 | 5.52 |
3650 | 3820 | 2.030540 | CACAGATGTGCCAAACAAGGAG | 60.031 | 50.000 | 0.00 | 0.00 | 43.61 | 3.69 |
3679 | 3849 | 3.060736 | TGCGTGGCACTAGGAATAAAA | 57.939 | 42.857 | 16.72 | 0.00 | 31.71 | 1.52 |
3692 | 3862 | 2.830285 | AAACAGACCGTTGCGTGGC | 61.830 | 57.895 | 0.00 | 0.00 | 38.07 | 5.01 |
3730 | 3900 | 0.034896 | CTGGTCGCCTACACACCTTT | 59.965 | 55.000 | 0.00 | 0.00 | 0.00 | 3.11 |
3752 | 3922 | 3.248266 | GACTGTTGCAATGAAATCTGCC | 58.752 | 45.455 | 0.59 | 0.00 | 37.79 | 4.85 |
3892 | 4070 | 2.432444 | TGTTGGGCTTCGGTAATGAAG | 58.568 | 47.619 | 0.00 | 0.00 | 46.47 | 3.02 |
3906 | 4084 | 2.643551 | AGCGGAACTGATAATGTTGGG | 58.356 | 47.619 | 0.00 | 0.00 | 0.00 | 4.12 |
4002 | 4180 | 2.301346 | GATTCCGGTTCAGGCATCAAT | 58.699 | 47.619 | 0.00 | 0.00 | 34.68 | 2.57 |
4025 | 4203 | 2.789409 | ACTAGATGGGCAGGACAAAC | 57.211 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
4549 | 4729 | 2.564771 | TGAAGTTGCAGAACCAGTCAG | 58.435 | 47.619 | 0.00 | 0.00 | 31.81 | 3.51 |
4645 | 4825 | 3.132111 | ACCCAACTGGATTTTGACACAAC | 59.868 | 43.478 | 0.00 | 0.00 | 37.39 | 3.32 |
4767 | 4953 | 2.289002 | AGAAGAAGCAACTTGTGAAGCG | 59.711 | 45.455 | 0.34 | 0.00 | 0.00 | 4.68 |
5046 | 5232 | 3.463944 | GCTATAGAGCGGGCAGTAAAAA | 58.536 | 45.455 | 3.21 | 0.00 | 39.39 | 1.94 |
5131 | 5317 | 3.313526 | GCACGAAAGAGGCATCAATGTAT | 59.686 | 43.478 | 0.00 | 0.00 | 35.60 | 2.29 |
5167 | 5353 | 7.255139 | GCGGAGACCTATAAAAGTGCATATTTT | 60.255 | 37.037 | 14.60 | 14.60 | 34.40 | 1.82 |
5353 | 5539 | 9.614792 | AGAATACTTGAATAGTTCGCCTAATTT | 57.385 | 29.630 | 0.00 | 0.00 | 38.33 | 1.82 |
5408 | 5594 | 4.703897 | ACGAAAAGATGTTCTGTTCCTGA | 58.296 | 39.130 | 0.00 | 0.00 | 37.42 | 3.86 |
5435 | 5621 | 9.942850 | CCAGGTTTGGTTATAAGAAAAATCAAT | 57.057 | 29.630 | 0.00 | 0.00 | 39.79 | 2.57 |
5445 | 5643 | 3.697166 | AGGTGCCAGGTTTGGTTATAAG | 58.303 | 45.455 | 0.00 | 0.00 | 46.80 | 1.73 |
5463 | 5661 | 8.927675 | TGTCCAATTAACATGTTAGTTTAGGT | 57.072 | 30.769 | 20.18 | 0.84 | 33.07 | 3.08 |
5583 | 5781 | 4.141344 | ACCAGAAAACAGGTAGCCAAACTA | 60.141 | 41.667 | 0.00 | 0.00 | 36.07 | 2.24 |
5617 | 5815 | 6.630444 | ATTCTTCTACATGCAGGCATTTAG | 57.370 | 37.500 | 17.27 | 17.27 | 37.79 | 1.85 |
5681 | 5879 | 9.437045 | GTTATTCCTTTGAAATTTGCAACAAAG | 57.563 | 29.630 | 23.43 | 23.43 | 44.65 | 2.77 |
5769 | 5970 | 6.207221 | ATTGTCTGCAAATGTGAATGACACTA | 59.793 | 34.615 | 5.80 | 0.00 | 42.61 | 2.74 |
5791 | 5992 | 7.708051 | TCTCTACTTCCATCTCGACTTTATTG | 58.292 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
6043 | 6244 | 8.192774 | TCATAAAATGCTGATGGAAATGAAGTC | 58.807 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
6065 | 6266 | 2.961741 | GCTCTGGAGTGTCCTGATCATA | 59.038 | 50.000 | 0.00 | 0.00 | 42.46 | 2.15 |
6223 | 6424 | 6.753180 | TGTAACAAGCTGGATATCTCAGATC | 58.247 | 40.000 | 19.48 | 7.59 | 34.36 | 2.75 |
6238 | 6439 | 4.794169 | CAATGTACCCAACTGTAACAAGC | 58.206 | 43.478 | 0.00 | 0.00 | 0.00 | 4.01 |
6256 | 6457 | 5.750067 | GCATAGGGTGAATTTACTTGCAATG | 59.250 | 40.000 | 0.00 | 0.00 | 0.00 | 2.82 |
6263 | 6464 | 6.884280 | GCAATAGCATAGGGTGAATTTACT | 57.116 | 37.500 | 0.00 | 0.00 | 41.58 | 2.24 |
6393 | 6594 | 5.683743 | GCTCACTATCAACTGTTATCGAGAC | 59.316 | 44.000 | 0.00 | 0.00 | 0.00 | 3.36 |
6394 | 6595 | 5.357032 | TGCTCACTATCAACTGTTATCGAGA | 59.643 | 40.000 | 0.00 | 0.00 | 0.00 | 4.04 |
6395 | 6596 | 5.582550 | TGCTCACTATCAACTGTTATCGAG | 58.417 | 41.667 | 0.00 | 0.00 | 0.00 | 4.04 |
6397 | 6598 | 5.582550 | TCTGCTCACTATCAACTGTTATCG | 58.417 | 41.667 | 0.00 | 0.00 | 0.00 | 2.92 |
6456 | 6657 | 5.107837 | CGACTAGTATTATTCTTTGCGCCTG | 60.108 | 44.000 | 4.18 | 0.00 | 0.00 | 4.85 |
6552 | 6753 | 8.219875 | AAACGTTAGGGTTTACAGTGTATCTGG | 61.220 | 40.741 | 0.00 | 0.00 | 39.16 | 3.86 |
6580 | 6816 | 4.292186 | AGTACATGTGAGGCAACAGAAT | 57.708 | 40.909 | 9.11 | 0.00 | 41.41 | 2.40 |
6614 | 6860 | 0.250234 | CTTCTGTCATCCCGGCTGAA | 59.750 | 55.000 | 6.53 | 3.00 | 0.00 | 3.02 |
6644 | 6890 | 2.203640 | TCCATAGCGGGCTCGGAT | 60.204 | 61.111 | 8.71 | 0.00 | 36.79 | 4.18 |
6668 | 6914 | 1.945819 | GCTCCATGGTTTCTTCGAGCA | 60.946 | 52.381 | 12.58 | 0.00 | 41.80 | 4.26 |
6754 | 7000 | 1.227292 | GTTCTCGGATTCTCGGGGC | 60.227 | 63.158 | 0.00 | 0.00 | 0.00 | 5.80 |
6785 | 7031 | 5.532406 | GGCCTTCTAATCAACAATCTATGCA | 59.468 | 40.000 | 0.00 | 0.00 | 0.00 | 3.96 |
6826 | 7073 | 3.335579 | GTGGGTGAACCTACTGCTTTAG | 58.664 | 50.000 | 8.62 | 0.00 | 43.32 | 1.85 |
6832 | 7079 | 2.536761 | TTTCGTGGGTGAACCTACTG | 57.463 | 50.000 | 13.34 | 7.67 | 44.32 | 2.74 |
6981 | 7229 | 2.727123 | ACACAATCACAAGGGACACA | 57.273 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
7052 | 7300 | 5.065090 | ACCAACTCCAAACGTTACAAGTAAC | 59.935 | 40.000 | 0.00 | 12.00 | 41.37 | 2.50 |
7053 | 7301 | 5.064962 | CACCAACTCCAAACGTTACAAGTAA | 59.935 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
7216 | 7464 | 3.001736 | GCGAAACAGCTTCATCATCTACC | 59.998 | 47.826 | 0.00 | 0.00 | 33.17 | 3.18 |
7287 | 7536 | 7.010183 | GCAACAGTAATCGAACAGAAGCTTATA | 59.990 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
7341 | 7591 | 2.093341 | GGCTACCGGGTCTATTTTGACA | 60.093 | 50.000 | 6.32 | 0.00 | 38.61 | 3.58 |
7380 | 7630 | 2.432874 | TGCCAGTATACATGTTAGGCGT | 59.567 | 45.455 | 2.30 | 0.00 | 43.35 | 5.68 |
7425 | 7675 | 3.392882 | ACAGGCAATTTTTGTGCTAAGC | 58.607 | 40.909 | 0.00 | 0.00 | 41.88 | 3.09 |
7429 | 7679 | 3.205338 | GGAAACAGGCAATTTTTGTGCT | 58.795 | 40.909 | 0.00 | 0.00 | 41.88 | 4.40 |
7445 | 7695 | 4.770795 | AGTATAGGATGTGCAGTGGAAAC | 58.229 | 43.478 | 0.00 | 0.00 | 0.00 | 2.78 |
7475 | 7725 | 5.692204 | TGTCTCTTCTTAAGCAGAGAAAACG | 59.308 | 40.000 | 28.93 | 8.11 | 43.88 | 3.60 |
7512 | 7762 | 5.472148 | TGATGTTCATGCATGGTTCTTTTC | 58.528 | 37.500 | 25.97 | 13.82 | 0.00 | 2.29 |
7577 | 7828 | 0.031585 | TGCAGGACGCGTATATGGTC | 59.968 | 55.000 | 13.97 | 0.00 | 46.97 | 4.02 |
7603 | 7854 | 3.110358 | GTTCAAACCGTAACAACTTGGC | 58.890 | 45.455 | 0.00 | 0.00 | 0.00 | 4.52 |
7624 | 7875 | 6.868864 | AGCATGAAATAAGTACTAGTATGCCG | 59.131 | 38.462 | 14.72 | 0.15 | 39.21 | 5.69 |
7679 | 7931 | 3.492756 | GCAAAAATACAACCGTGCATGTT | 59.507 | 39.130 | 4.96 | 1.81 | 32.29 | 2.71 |
7685 | 7937 | 3.085443 | TGGTGCAAAAATACAACCGTG | 57.915 | 42.857 | 0.00 | 0.00 | 0.00 | 4.94 |
7713 | 7965 | 7.444299 | TCATGCTGCTATGACAACTATTCATA | 58.556 | 34.615 | 0.00 | 0.00 | 35.31 | 2.15 |
7726 | 7978 | 3.143728 | TGCCTAACATCATGCTGCTATG | 58.856 | 45.455 | 0.00 | 5.03 | 0.00 | 2.23 |
7745 | 7997 | 1.166129 | TCGCCCTATACTCGAGATGC | 58.834 | 55.000 | 21.68 | 10.47 | 0.00 | 3.91 |
7756 | 8008 | 3.119225 | GAGTCCACTCTCGCCCTAT | 57.881 | 57.895 | 0.00 | 0.00 | 39.81 | 2.57 |
7757 | 8009 | 4.659986 | GAGTCCACTCTCGCCCTA | 57.340 | 61.111 | 0.00 | 0.00 | 39.81 | 3.53 |
7763 | 8015 | 1.304217 | TCCACCCGAGTCCACTCTC | 60.304 | 63.158 | 5.21 | 0.00 | 40.75 | 3.20 |
7764 | 8016 | 1.304547 | CTCCACCCGAGTCCACTCT | 60.305 | 63.158 | 5.21 | 0.00 | 40.75 | 3.24 |
7765 | 8017 | 0.898789 | TTCTCCACCCGAGTCCACTC | 60.899 | 60.000 | 0.00 | 0.00 | 39.84 | 3.51 |
7766 | 8018 | 0.252284 | ATTCTCCACCCGAGTCCACT | 60.252 | 55.000 | 0.00 | 0.00 | 39.84 | 4.00 |
7767 | 8019 | 1.481871 | TATTCTCCACCCGAGTCCAC | 58.518 | 55.000 | 0.00 | 0.00 | 39.84 | 4.02 |
7768 | 8020 | 2.091278 | AGATATTCTCCACCCGAGTCCA | 60.091 | 50.000 | 0.00 | 0.00 | 39.84 | 4.02 |
7769 | 8021 | 2.297597 | CAGATATTCTCCACCCGAGTCC | 59.702 | 54.545 | 0.00 | 0.00 | 39.84 | 3.85 |
7770 | 8022 | 2.288518 | GCAGATATTCTCCACCCGAGTC | 60.289 | 54.545 | 0.00 | 0.00 | 39.84 | 3.36 |
7771 | 8023 | 1.689273 | GCAGATATTCTCCACCCGAGT | 59.311 | 52.381 | 0.00 | 0.00 | 39.84 | 4.18 |
7772 | 8024 | 2.447244 | GCAGATATTCTCCACCCGAG | 57.553 | 55.000 | 0.00 | 0.00 | 40.30 | 4.63 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.