Multiple sequence alignment - TraesCS7B01G241900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G241900 chr7B 100.000 5559 0 0 1 5559 449792428 449786870 0 10266
1 TraesCS7B01G241900 chr7D 93.146 5150 191 56 1 5081 432938150 432943206 0 7406
2 TraesCS7B01G241900 chr7A 95.138 3106 115 19 1904 4981 500128460 500125363 0 4867
3 TraesCS7B01G241900 chr7A 81.048 1546 122 87 248 1674 500130280 500128787 0 1074


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G241900 chr7B 449786870 449792428 5558 True 10266.0 10266 100.000 1 5559 1 chr7B.!!$R1 5558
1 TraesCS7B01G241900 chr7D 432938150 432943206 5056 False 7406.0 7406 93.146 1 5081 1 chr7D.!!$F1 5080
2 TraesCS7B01G241900 chr7A 500125363 500130280 4917 True 2970.5 4867 88.093 248 4981 2 chr7A.!!$R1 4733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
736 798 0.179029 CTCCCGTCTCTCTCCTCTCC 60.179 65.0 0.00 0.00 0.00 3.71 F
1783 1941 0.106167 TCTCAGTGGGGATCCTACGG 60.106 60.0 12.58 11.91 0.00 4.02 F
2068 2357 0.250901 GGAGGAGGAAGTTGCAAGCA 60.251 55.0 0.00 0.00 0.00 3.91 F
2791 3089 0.385390 CCAGTGTGACCAAAACTGCC 59.615 55.0 8.00 0.00 39.99 4.85 F
3817 4115 0.040958 CACTCAACTGGAAGCAACGC 60.041 55.0 0.00 0.00 37.60 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1800 1958 0.038744 TCCCGAACCGAACTAGTCCT 59.961 55.0 0.00 0.00 0.00 3.85 R
2885 3183 0.100503 AGTGCGTTGGAAGTGTTTGC 59.899 50.0 0.00 0.00 0.00 3.68 R
3814 4112 0.463295 CAATGCAGATCTCCAGGCGT 60.463 55.0 0.00 0.00 0.00 5.68 R
4531 4829 0.392193 CCTCGGCTTTGATCAGCTGT 60.392 55.0 14.67 0.42 45.25 4.40 R
5509 5833 0.032813 CCAAGTGAAGGCATCCCCAT 60.033 55.0 0.00 0.00 35.39 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 0.317020 GTGCTGGTCAAAACGAGTGC 60.317 55.000 0.00 0.00 34.03 4.40
134 135 3.189287 ACGATTCCACATGCTTTCTTCAC 59.811 43.478 0.00 0.00 0.00 3.18
167 168 1.918957 CAACCATTCTCCCTTCCTCCT 59.081 52.381 0.00 0.00 0.00 3.69
168 169 3.115390 CAACCATTCTCCCTTCCTCCTA 58.885 50.000 0.00 0.00 0.00 2.94
180 181 3.510360 CCTTCCTCCTACGAAGAGAAACA 59.490 47.826 0.00 0.00 39.29 2.83
265 267 1.815421 CACGATCGCTTCTTGGGGG 60.815 63.158 16.60 0.00 0.00 5.40
267 269 2.517166 GATCGCTTCTTGGGGGCC 60.517 66.667 0.00 0.00 0.00 5.80
268 270 4.489771 ATCGCTTCTTGGGGGCCG 62.490 66.667 0.00 0.00 0.00 6.13
287 289 4.318903 GGCCGAGATAGATACGATCATACG 60.319 50.000 0.00 0.00 39.31 3.06
300 302 5.369874 CGATCATACGACGACGCAGTTTG 62.370 52.174 7.30 1.18 43.96 2.93
332 350 1.334054 GCAGAGAAATGCGCAAACAG 58.666 50.000 17.11 1.86 36.28 3.16
356 374 0.882927 TTACCGTGCAAGCCACTGTC 60.883 55.000 0.00 0.00 40.45 3.51
371 389 2.032681 GTCTCCACACCACTGGCC 59.967 66.667 0.00 0.00 0.00 5.36
394 416 1.870383 TGCCGTTGCATCCGTAAAC 59.130 52.632 5.69 0.00 44.23 2.01
406 430 1.335496 TCCGTAAACTTTGCAAGTGCC 59.665 47.619 0.00 0.00 41.91 5.01
467 495 3.261643 ACGGTTAGGTTAGGTTAGGGTTG 59.738 47.826 0.00 0.00 0.00 3.77
470 498 2.445806 AGGTTAGGTTAGGGTTGGGT 57.554 50.000 0.00 0.00 0.00 4.51
556 597 4.940046 CAGACAGGAGAGTTTGTGCATAAT 59.060 41.667 0.00 0.00 0.00 1.28
560 601 7.831193 AGACAGGAGAGTTTGTGCATAATAATT 59.169 33.333 0.00 0.00 0.00 1.40
562 603 9.461312 ACAGGAGAGTTTGTGCATAATAATTAA 57.539 29.630 0.00 0.00 0.00 1.40
697 759 2.523285 AAGGTGGCAGCTCAGCTCA 61.523 57.895 20.86 0.00 43.67 4.26
736 798 0.179029 CTCCCGTCTCTCTCCTCTCC 60.179 65.000 0.00 0.00 0.00 3.71
737 799 1.152839 CCCGTCTCTCTCCTCTCCC 60.153 68.421 0.00 0.00 0.00 4.30
738 800 1.641552 CCCGTCTCTCTCCTCTCCCT 61.642 65.000 0.00 0.00 0.00 4.20
739 801 0.179029 CCGTCTCTCTCCTCTCCCTC 60.179 65.000 0.00 0.00 0.00 4.30
754 816 1.063567 TCCCTCTCTCTCCAAGCCTAC 60.064 57.143 0.00 0.00 0.00 3.18
793 856 1.902938 AGCTGAAAACTCCTCCAAGC 58.097 50.000 0.00 0.00 0.00 4.01
862 925 4.675029 GTCCGGACGGTGGTGGTG 62.675 72.222 20.85 0.00 36.47 4.17
870 933 3.646715 GGTGGTGGTGCTGGGCTA 61.647 66.667 0.00 0.00 0.00 3.93
871 934 2.359975 GTGGTGGTGCTGGGCTAC 60.360 66.667 0.00 0.00 0.00 3.58
1060 1125 3.564027 CGTTTCGCGGATCCAGCC 61.564 66.667 13.41 3.00 36.85 4.85
1062 1127 1.745489 GTTTCGCGGATCCAGCCTT 60.745 57.895 13.41 0.00 0.00 4.35
1068 1133 0.453390 GCGGATCCAGCCTTTTCTTG 59.547 55.000 13.41 0.00 0.00 3.02
1077 1142 3.118542 CAGCCTTTTCTTGCTTGTGTTC 58.881 45.455 0.00 0.00 35.12 3.18
1078 1143 3.026694 AGCCTTTTCTTGCTTGTGTTCT 58.973 40.909 0.00 0.00 32.94 3.01
1079 1144 3.448660 AGCCTTTTCTTGCTTGTGTTCTT 59.551 39.130 0.00 0.00 32.94 2.52
1080 1145 3.798878 GCCTTTTCTTGCTTGTGTTCTTC 59.201 43.478 0.00 0.00 0.00 2.87
1081 1146 4.677779 GCCTTTTCTTGCTTGTGTTCTTCA 60.678 41.667 0.00 0.00 0.00 3.02
1113 1178 1.860078 CTGTTCTTGTCGGCGTTCC 59.140 57.895 6.85 0.00 0.00 3.62
1114 1179 1.566018 CTGTTCTTGTCGGCGTTCCC 61.566 60.000 6.85 0.00 0.00 3.97
1119 1184 2.162338 CTTGTCGGCGTTCCCCAGTA 62.162 60.000 6.85 0.00 0.00 2.74
1142 1213 6.942532 ACTGTTGCTGTTTCTCATTTCTTA 57.057 33.333 0.00 0.00 0.00 2.10
1202 1290 9.974980 TTTATTGTTCATTTTTAGTCCAGGAAC 57.025 29.630 0.00 0.00 35.09 3.62
1205 1293 5.534654 TGTTCATTTTTAGTCCAGGAACCAG 59.465 40.000 0.00 0.00 33.95 4.00
1215 1303 6.139679 AGTCCAGGAACCAGAAATCAATAA 57.860 37.500 0.00 0.00 0.00 1.40
1234 1322 3.582714 AATAGTGCTGCTCTTTTTGCC 57.417 42.857 9.71 0.00 0.00 4.52
1251 1339 1.890174 CCCCGATTTGAAGTTGGCC 59.110 57.895 0.00 0.00 0.00 5.36
1261 1349 2.886913 TGAAGTTGGCCATGGAAATGA 58.113 42.857 18.40 0.00 0.00 2.57
1357 1465 9.775854 CAGAAACTCTGGATATTCACATATTCT 57.224 33.333 0.00 0.00 40.71 2.40
1453 1568 1.375908 CACGGTGGTCTGGTCCATG 60.376 63.158 0.00 0.00 39.81 3.66
1457 1572 1.380302 GTGGTCTGGTCCATGCCTT 59.620 57.895 11.70 0.00 39.81 4.35
1526 1641 1.985159 ACTTACTCCCAGTCATGGCAA 59.015 47.619 0.00 0.00 46.19 4.52
1556 1671 2.592993 GCACACCTCTAGGCCACCA 61.593 63.158 5.01 0.00 39.32 4.17
1627 1755 3.199442 TCCCACCAGGACTGATTTCTA 57.801 47.619 0.00 0.00 40.93 2.10
1628 1756 2.838202 TCCCACCAGGACTGATTTCTAC 59.162 50.000 0.00 0.00 40.93 2.59
1629 1757 2.840651 CCCACCAGGACTGATTTCTACT 59.159 50.000 0.00 0.00 38.24 2.57
1630 1758 3.118592 CCCACCAGGACTGATTTCTACTC 60.119 52.174 0.00 0.00 38.24 2.59
1631 1759 3.118592 CCACCAGGACTGATTTCTACTCC 60.119 52.174 0.00 0.00 36.89 3.85
1632 1760 3.772025 CACCAGGACTGATTTCTACTCCT 59.228 47.826 0.00 0.00 0.00 3.69
1728 1879 1.918609 GTGAAGAACGCGTCCATAGTC 59.081 52.381 14.44 4.99 0.00 2.59
1757 1915 4.054671 CGGTTTGCCTTTTTATTGCTTCA 58.945 39.130 0.00 0.00 0.00 3.02
1778 1936 1.055040 CCTGATCTCAGTGGGGATCC 58.945 60.000 17.84 1.92 42.27 3.36
1779 1937 1.414245 CCTGATCTCAGTGGGGATCCT 60.414 57.143 12.58 0.00 42.27 3.24
1780 1938 2.158249 CCTGATCTCAGTGGGGATCCTA 60.158 54.545 12.58 0.00 42.27 2.94
1781 1939 2.896685 CTGATCTCAGTGGGGATCCTAC 59.103 54.545 12.58 11.36 39.09 3.18
1782 1940 1.889829 GATCTCAGTGGGGATCCTACG 59.110 57.143 12.58 8.10 34.09 3.51
1783 1941 0.106167 TCTCAGTGGGGATCCTACGG 60.106 60.000 12.58 11.91 0.00 4.02
1784 1942 0.397254 CTCAGTGGGGATCCTACGGT 60.397 60.000 12.58 0.00 0.00 4.83
1785 1943 0.396695 TCAGTGGGGATCCTACGGTC 60.397 60.000 12.58 0.00 0.00 4.79
1786 1944 0.397254 CAGTGGGGATCCTACGGTCT 60.397 60.000 12.58 3.12 0.00 3.85
1787 1945 0.397254 AGTGGGGATCCTACGGTCTG 60.397 60.000 12.58 0.00 0.00 3.51
1788 1946 0.396695 GTGGGGATCCTACGGTCTGA 60.397 60.000 12.58 0.00 0.00 3.27
1789 1947 0.561184 TGGGGATCCTACGGTCTGAT 59.439 55.000 12.58 0.00 0.00 2.90
1790 1948 1.258676 GGGGATCCTACGGTCTGATC 58.741 60.000 12.58 9.96 35.30 2.92
1792 1950 1.258676 GGATCCTACGGTCTGATCCC 58.741 60.000 20.29 8.83 45.79 3.85
1793 1951 1.480683 GGATCCTACGGTCTGATCCCA 60.481 57.143 20.29 0.00 45.79 4.37
1794 1952 2.530701 GATCCTACGGTCTGATCCCAT 58.469 52.381 8.04 0.00 30.89 4.00
1795 1953 1.704641 TCCTACGGTCTGATCCCATG 58.295 55.000 0.00 0.00 0.00 3.66
1796 1954 0.681733 CCTACGGTCTGATCCCATGG 59.318 60.000 4.14 4.14 0.00 3.66
1797 1955 0.681733 CTACGGTCTGATCCCATGGG 59.318 60.000 26.30 26.30 0.00 4.00
1798 1956 1.407656 TACGGTCTGATCCCATGGGC 61.408 60.000 27.41 13.89 34.68 5.36
1799 1957 2.517919 GGTCTGATCCCATGGGCC 59.482 66.667 27.41 19.73 34.68 5.80
1800 1958 2.386100 GGTCTGATCCCATGGGCCA 61.386 63.158 27.41 23.06 34.68 5.36
1801 1959 1.150081 GTCTGATCCCATGGGCCAG 59.850 63.158 31.35 31.35 37.17 4.85
1802 1960 2.080536 TCTGATCCCATGGGCCAGG 61.081 63.158 33.77 22.21 36.79 4.45
1803 1961 2.044280 TGATCCCATGGGCCAGGA 59.956 61.111 27.41 18.62 34.68 3.86
1837 2119 1.000283 GGATGCGAGTCCATACCTCTG 60.000 57.143 2.01 0.00 38.20 3.35
1841 2123 1.927895 CGAGTCCATACCTCTGTTGC 58.072 55.000 0.00 0.00 0.00 4.17
1872 2154 7.839680 TCTGTATATCTGATGTTCTTGCCTA 57.160 36.000 0.00 0.00 0.00 3.93
1873 2155 8.250143 TCTGTATATCTGATGTTCTTGCCTAA 57.750 34.615 0.00 0.00 0.00 2.69
1874 2156 8.874156 TCTGTATATCTGATGTTCTTGCCTAAT 58.126 33.333 0.00 0.00 0.00 1.73
1875 2157 9.499479 CTGTATATCTGATGTTCTTGCCTAATT 57.501 33.333 0.00 0.00 0.00 1.40
1876 2158 9.276590 TGTATATCTGATGTTCTTGCCTAATTG 57.723 33.333 0.00 0.00 0.00 2.32
1877 2159 4.970662 TCTGATGTTCTTGCCTAATTGC 57.029 40.909 0.00 0.00 0.00 3.56
1878 2160 3.696051 TCTGATGTTCTTGCCTAATTGCC 59.304 43.478 0.00 0.00 0.00 4.52
1879 2161 3.698040 CTGATGTTCTTGCCTAATTGCCT 59.302 43.478 0.00 0.00 0.00 4.75
1887 2169 6.247229 TCTTGCCTAATTGCCTTACTATCA 57.753 37.500 0.00 0.00 0.00 2.15
1895 2177 9.355215 CCTAATTGCCTTACTATCAGTTATACG 57.645 37.037 0.00 0.00 0.00 3.06
1896 2178 9.355215 CTAATTGCCTTACTATCAGTTATACGG 57.645 37.037 0.00 0.00 0.00 4.02
1897 2179 6.964807 TTGCCTTACTATCAGTTATACGGA 57.035 37.500 0.00 0.00 0.00 4.69
1898 2180 6.570672 TGCCTTACTATCAGTTATACGGAG 57.429 41.667 0.00 0.00 0.00 4.63
1924 2206 2.034124 ACATGCCAGTGTTCTTGCTTT 58.966 42.857 0.00 0.00 34.08 3.51
1932 2214 6.040391 TGCCAGTGTTCTTGCTTTACTAATTT 59.960 34.615 0.00 0.00 34.08 1.82
2015 2304 4.099881 ACATGACCTCAAACATTTTGCACT 59.900 37.500 0.00 0.00 0.00 4.40
2016 2305 4.305989 TGACCTCAAACATTTTGCACTC 57.694 40.909 0.00 0.00 0.00 3.51
2067 2356 0.962855 GGGAGGAGGAAGTTGCAAGC 60.963 60.000 0.00 0.00 0.00 4.01
2068 2357 0.250901 GGAGGAGGAAGTTGCAAGCA 60.251 55.000 0.00 0.00 0.00 3.91
2139 2437 0.881118 GATTTCAAGCCTGCCGACAA 59.119 50.000 0.00 0.00 0.00 3.18
2221 2519 3.399181 GGGGCATCTCCGGTGACA 61.399 66.667 8.68 0.00 34.94 3.58
2227 2525 0.603065 CATCTCCGGTGACAGTGTCA 59.397 55.000 22.06 22.06 40.50 3.58
2288 2586 1.595929 TCCTCGTTTGACAACCCGC 60.596 57.895 2.36 0.00 0.00 6.13
2382 2680 5.179555 GGCATTTTGTTCGTCTCTACTTCTT 59.820 40.000 0.00 0.00 0.00 2.52
2428 2726 1.071471 CTCCACCGCCAAGTTCACT 59.929 57.895 0.00 0.00 0.00 3.41
2479 2777 0.539438 ATTTCCAGCAGCCGGACAAA 60.539 50.000 5.05 0.00 30.29 2.83
2482 2780 1.898574 CCAGCAGCCGGACAAAACT 60.899 57.895 5.05 0.00 0.00 2.66
2611 2909 5.146298 TCTGTTCCAGATGATCTCATAGCT 58.854 41.667 0.00 0.00 35.39 3.32
2791 3089 0.385390 CCAGTGTGACCAAAACTGCC 59.615 55.000 8.00 0.00 39.99 4.85
2815 3113 5.948162 CCAATATGGCAAGCCTATCAAGTAT 59.052 40.000 12.96 0.00 36.94 2.12
2885 3183 0.745845 AGCTACAGAATTGGCGGCTG 60.746 55.000 11.43 1.46 35.81 4.85
2893 3191 1.747325 AATTGGCGGCTGCAAACACT 61.747 50.000 21.31 0.00 45.35 3.55
3196 3494 2.236766 GATGGGATTCTGAATGGCCTG 58.763 52.381 7.78 0.00 0.00 4.85
3264 3562 5.593010 TGGGAATAACGGTTCAAACAAAAG 58.407 37.500 0.00 0.00 0.00 2.27
3373 3671 2.710971 CGACGACAAGCAGCACTCG 61.711 63.158 0.00 0.00 0.00 4.18
3484 3782 5.089970 TGAATGGAAGCTATGGATATCGG 57.910 43.478 0.00 0.00 0.00 4.18
3814 4112 1.202806 CCCTCACTCAACTGGAAGCAA 60.203 52.381 0.00 0.00 37.60 3.91
3817 4115 0.040958 CACTCAACTGGAAGCAACGC 60.041 55.000 0.00 0.00 37.60 4.84
3865 4163 3.901844 GGGGGCTACACTATCTTCATACA 59.098 47.826 0.00 0.00 0.00 2.29
3874 4172 4.742167 CACTATCTTCATACAGGTTCTGCG 59.258 45.833 0.00 0.00 34.37 5.18
3925 4223 4.278919 TCTGCAAACATCTTGCTTGATGAA 59.721 37.500 20.61 5.56 44.71 2.57
4021 4319 1.545651 GCAGTGAAGGGTAGCTTTGGT 60.546 52.381 0.00 0.00 0.00 3.67
4192 4490 2.015456 TGAAGTGGCAGAAGAGAGGA 57.985 50.000 0.00 0.00 0.00 3.71
4426 4724 4.336581 CTGTCGTCGCAGGTTCAA 57.663 55.556 8.30 0.00 33.11 2.69
4531 4829 1.623311 TCGATGAGCAGGGTTTTCTCA 59.377 47.619 0.00 0.00 40.62 3.27
4575 4873 1.297598 GAAAACGCGCCGGATGATG 60.298 57.895 5.05 0.00 0.00 3.07
4719 5018 3.117888 TGGATTTCTGATGGCCTTACCTC 60.118 47.826 3.32 0.00 40.22 3.85
4731 5038 1.279271 CCTTACCTCACCCACTTCTGG 59.721 57.143 0.00 0.00 37.29 3.86
4746 5053 0.916086 TCTGGGGGCACACGATTTAT 59.084 50.000 0.00 0.00 0.00 1.40
4836 5156 2.764010 TCAGGCTAAACGCTGGATTCTA 59.236 45.455 0.00 0.00 39.13 2.10
4886 5206 6.762187 TGGCATTAACAAAATTATCATGCTGG 59.238 34.615 0.00 0.00 36.59 4.85
4889 5209 7.925483 GCATTAACAAAATTATCATGCTGGGTA 59.075 33.333 0.00 0.00 34.10 3.69
4919 5239 1.001378 GTGTGCAATCTTCCGCTGTTT 60.001 47.619 0.00 0.00 0.00 2.83
4992 5315 0.460987 CGAGAGGAGTTGCCCACATC 60.461 60.000 0.00 0.00 37.37 3.06
5067 5391 1.502231 AGTTTGCACTCACGTAGCAG 58.498 50.000 0.00 0.00 39.72 4.24
5072 5396 0.867753 GCACTCACGTAGCAGGATCG 60.868 60.000 0.00 0.00 0.00 3.69
5074 5398 1.313091 ACTCACGTAGCAGGATCGCA 61.313 55.000 0.00 0.00 0.00 5.10
5087 5411 2.333581 TCGCACGCGAGAGAAACA 59.666 55.556 15.93 0.00 44.01 2.83
5088 5412 1.729484 TCGCACGCGAGAGAAACAG 60.729 57.895 15.93 0.00 44.01 3.16
5089 5413 2.472049 GCACGCGAGAGAAACAGC 59.528 61.111 15.93 0.00 0.00 4.40
5090 5414 2.024319 GCACGCGAGAGAAACAGCT 61.024 57.895 15.93 0.00 0.00 4.24
5091 5415 1.777819 CACGCGAGAGAAACAGCTG 59.222 57.895 15.93 13.48 0.00 4.24
5092 5416 2.024319 ACGCGAGAGAAACAGCTGC 61.024 57.895 15.93 0.00 0.00 5.25
5093 5417 1.735920 CGCGAGAGAAACAGCTGCT 60.736 57.895 15.27 2.18 0.00 4.24
5094 5418 1.786582 GCGAGAGAAACAGCTGCTG 59.213 57.895 27.02 27.02 37.52 4.41
5095 5419 1.786582 CGAGAGAAACAGCTGCTGC 59.213 57.895 28.39 13.16 34.37 5.25
5096 5420 1.633852 CGAGAGAAACAGCTGCTGCC 61.634 60.000 28.39 17.50 40.80 4.85
5097 5421 1.633852 GAGAGAAACAGCTGCTGCCG 61.634 60.000 28.39 6.75 40.80 5.69
5098 5422 3.319926 GAGAAACAGCTGCTGCCGC 62.320 63.158 28.39 17.12 40.80 6.53
5099 5423 4.410743 GAAACAGCTGCTGCCGCC 62.411 66.667 28.39 12.10 40.80 6.13
5112 5436 3.861797 CCGCCGCCTAGGGTTCAT 61.862 66.667 11.72 0.00 41.48 2.57
5113 5437 2.280186 CGCCGCCTAGGGTTCATC 60.280 66.667 11.72 0.00 41.48 2.92
5114 5438 2.111251 GCCGCCTAGGGTTCATCC 59.889 66.667 11.72 0.00 41.48 3.51
5123 5447 4.666105 GGTTCATCCCAAGCCTCC 57.334 61.111 0.00 0.00 0.00 4.30
5124 5448 1.691219 GGTTCATCCCAAGCCTCCA 59.309 57.895 0.00 0.00 0.00 3.86
5125 5449 0.259938 GGTTCATCCCAAGCCTCCAT 59.740 55.000 0.00 0.00 0.00 3.41
5126 5450 1.685148 GTTCATCCCAAGCCTCCATC 58.315 55.000 0.00 0.00 0.00 3.51
5127 5451 1.213926 GTTCATCCCAAGCCTCCATCT 59.786 52.381 0.00 0.00 0.00 2.90
5128 5452 1.135094 TCATCCCAAGCCTCCATCTC 58.865 55.000 0.00 0.00 0.00 2.75
5129 5453 0.110104 CATCCCAAGCCTCCATCTCC 59.890 60.000 0.00 0.00 0.00 3.71
5130 5454 1.414061 ATCCCAAGCCTCCATCTCCG 61.414 60.000 0.00 0.00 0.00 4.63
5131 5455 2.203126 CCAAGCCTCCATCTCCGC 60.203 66.667 0.00 0.00 0.00 5.54
5132 5456 2.203126 CAAGCCTCCATCTCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
5133 5457 3.483869 AAGCCTCCATCTCCGCCC 61.484 66.667 0.00 0.00 0.00 6.13
5150 5474 3.965888 CCCCCTCTCTTTTGTCTGG 57.034 57.895 0.00 0.00 0.00 3.86
5151 5475 0.322906 CCCCCTCTCTTTTGTCTGGC 60.323 60.000 0.00 0.00 0.00 4.85
5152 5476 0.674895 CCCCTCTCTTTTGTCTGGCG 60.675 60.000 0.00 0.00 0.00 5.69
5153 5477 0.674895 CCCTCTCTTTTGTCTGGCGG 60.675 60.000 0.00 0.00 0.00 6.13
5154 5478 1.301677 CCTCTCTTTTGTCTGGCGGC 61.302 60.000 0.00 0.00 0.00 6.53
5155 5479 0.321122 CTCTCTTTTGTCTGGCGGCT 60.321 55.000 11.43 0.00 0.00 5.52
5156 5480 0.973632 TCTCTTTTGTCTGGCGGCTA 59.026 50.000 11.43 0.00 0.00 3.93
5157 5481 1.079503 CTCTTTTGTCTGGCGGCTAC 58.920 55.000 11.43 9.32 0.00 3.58
5158 5482 0.669318 TCTTTTGTCTGGCGGCTACG 60.669 55.000 11.43 0.00 44.63 3.51
5159 5483 0.949105 CTTTTGTCTGGCGGCTACGT 60.949 55.000 11.43 0.00 43.45 3.57
5160 5484 0.947180 TTTTGTCTGGCGGCTACGTC 60.947 55.000 11.43 0.00 46.87 4.34
5173 5497 1.669604 CTACGTCAGCAGCTAGAGGA 58.330 55.000 16.53 0.00 0.00 3.71
5174 5498 1.601903 CTACGTCAGCAGCTAGAGGAG 59.398 57.143 16.53 5.20 0.00 3.69
5175 5499 0.322997 ACGTCAGCAGCTAGAGGAGT 60.323 55.000 16.53 6.63 0.00 3.85
5176 5500 1.065345 ACGTCAGCAGCTAGAGGAGTA 60.065 52.381 16.53 0.00 0.00 2.59
5177 5501 1.601903 CGTCAGCAGCTAGAGGAGTAG 59.398 57.143 0.00 0.00 0.00 2.57
5178 5502 1.953686 GTCAGCAGCTAGAGGAGTAGG 59.046 57.143 0.00 0.00 0.00 3.18
5179 5503 1.133637 TCAGCAGCTAGAGGAGTAGGG 60.134 57.143 0.00 0.00 0.00 3.53
5180 5504 0.187361 AGCAGCTAGAGGAGTAGGGG 59.813 60.000 0.00 0.00 0.00 4.79
5181 5505 1.468506 GCAGCTAGAGGAGTAGGGGC 61.469 65.000 0.00 0.00 0.00 5.80
5182 5506 0.830023 CAGCTAGAGGAGTAGGGGCC 60.830 65.000 0.00 0.00 0.00 5.80
5183 5507 1.904378 GCTAGAGGAGTAGGGGCCG 60.904 68.421 0.00 0.00 0.00 6.13
5184 5508 1.228613 CTAGAGGAGTAGGGGCCGG 60.229 68.421 0.00 0.00 0.00 6.13
5185 5509 3.447933 TAGAGGAGTAGGGGCCGGC 62.448 68.421 21.18 21.18 0.00 6.13
5195 5519 4.717313 GGGCCGGCCTCTTCGTTT 62.717 66.667 42.70 0.00 36.10 3.60
5196 5520 2.671963 GGCCGGCCTCTTCGTTTT 60.672 61.111 38.76 0.00 0.00 2.43
5197 5521 2.265904 GGCCGGCCTCTTCGTTTTT 61.266 57.895 38.76 0.00 0.00 1.94
5230 5554 1.021202 TTTTCAGTGGCAAGGTGACG 58.979 50.000 0.00 0.00 0.00 4.35
5231 5555 0.179234 TTTCAGTGGCAAGGTGACGA 59.821 50.000 0.00 0.00 0.00 4.20
5232 5556 0.531974 TTCAGTGGCAAGGTGACGAC 60.532 55.000 0.00 0.00 0.00 4.34
5233 5557 2.029073 AGTGGCAAGGTGACGACG 59.971 61.111 0.00 0.00 0.00 5.12
5234 5558 2.028484 GTGGCAAGGTGACGACGA 59.972 61.111 0.00 0.00 0.00 4.20
5235 5559 2.028484 TGGCAAGGTGACGACGAC 59.972 61.111 0.00 0.00 0.00 4.34
5236 5560 3.103911 GGCAAGGTGACGACGACG 61.104 66.667 5.58 5.58 45.75 5.12
5237 5561 2.050714 GCAAGGTGACGACGACGA 60.051 61.111 15.32 0.00 42.66 4.20
5238 5562 1.443872 GCAAGGTGACGACGACGAT 60.444 57.895 15.32 0.00 42.66 3.73
5239 5563 1.674611 GCAAGGTGACGACGACGATG 61.675 60.000 15.32 4.32 42.66 3.84
5240 5564 0.386858 CAAGGTGACGACGACGATGT 60.387 55.000 15.32 0.00 42.66 3.06
5241 5565 0.313043 AAGGTGACGACGACGATGTT 59.687 50.000 15.32 0.00 42.66 2.71
5242 5566 1.159285 AGGTGACGACGACGATGTTA 58.841 50.000 15.32 0.00 42.66 2.41
5243 5567 1.135859 AGGTGACGACGACGATGTTAC 60.136 52.381 15.32 6.24 42.66 2.50
5244 5568 1.400113 GGTGACGACGACGATGTTACA 60.400 52.381 15.32 0.00 42.66 2.41
5245 5569 2.309693 GTGACGACGACGATGTTACAA 58.690 47.619 15.32 0.00 42.66 2.41
5246 5570 2.912967 GTGACGACGACGATGTTACAAT 59.087 45.455 15.32 0.00 42.66 2.71
5247 5571 4.090729 GTGACGACGACGATGTTACAATA 58.909 43.478 15.32 0.00 42.66 1.90
5248 5572 4.554586 GTGACGACGACGATGTTACAATAA 59.445 41.667 15.32 0.00 42.66 1.40
5249 5573 4.789629 TGACGACGACGATGTTACAATAAG 59.210 41.667 15.32 0.00 42.66 1.73
5250 5574 4.100529 ACGACGACGATGTTACAATAAGG 58.899 43.478 15.32 0.00 42.66 2.69
5251 5575 4.100529 CGACGACGATGTTACAATAAGGT 58.899 43.478 0.00 0.00 42.66 3.50
5252 5576 4.203764 CGACGACGATGTTACAATAAGGTC 59.796 45.833 0.00 0.00 42.66 3.85
5253 5577 5.320549 ACGACGATGTTACAATAAGGTCT 57.679 39.130 0.00 0.00 0.00 3.85
5254 5578 5.717119 ACGACGATGTTACAATAAGGTCTT 58.283 37.500 0.00 0.00 0.00 3.01
5255 5579 6.161381 ACGACGATGTTACAATAAGGTCTTT 58.839 36.000 0.00 0.00 0.00 2.52
5256 5580 6.647895 ACGACGATGTTACAATAAGGTCTTTT 59.352 34.615 0.00 0.00 0.00 2.27
5257 5581 7.172019 ACGACGATGTTACAATAAGGTCTTTTT 59.828 33.333 0.00 0.00 0.00 1.94
5258 5582 7.477422 CGACGATGTTACAATAAGGTCTTTTTG 59.523 37.037 10.75 10.75 37.47 2.44
5259 5583 7.590279 ACGATGTTACAATAAGGTCTTTTTGG 58.410 34.615 14.86 2.63 36.34 3.28
5260 5584 7.229907 ACGATGTTACAATAAGGTCTTTTTGGT 59.770 33.333 14.86 6.56 36.34 3.67
5261 5585 7.749126 CGATGTTACAATAAGGTCTTTTTGGTC 59.251 37.037 14.86 7.82 36.34 4.02
5262 5586 8.706322 ATGTTACAATAAGGTCTTTTTGGTCT 57.294 30.769 14.86 1.85 36.34 3.85
5263 5587 9.802039 ATGTTACAATAAGGTCTTTTTGGTCTA 57.198 29.630 14.86 3.75 36.34 2.59
5264 5588 9.802039 TGTTACAATAAGGTCTTTTTGGTCTAT 57.198 29.630 14.86 1.33 36.34 1.98
5267 5591 8.934023 ACAATAAGGTCTTTTTGGTCTATTCA 57.066 30.769 14.86 0.00 36.34 2.57
5268 5592 9.533831 ACAATAAGGTCTTTTTGGTCTATTCAT 57.466 29.630 14.86 0.00 36.34 2.57
5275 5599 8.979574 GGTCTTTTTGGTCTATTCATATCTACG 58.020 37.037 0.00 0.00 0.00 3.51
5276 5600 8.979574 GTCTTTTTGGTCTATTCATATCTACGG 58.020 37.037 0.00 0.00 0.00 4.02
5277 5601 8.701895 TCTTTTTGGTCTATTCATATCTACGGT 58.298 33.333 0.00 0.00 0.00 4.83
5278 5602 9.326413 CTTTTTGGTCTATTCATATCTACGGTT 57.674 33.333 0.00 0.00 0.00 4.44
5279 5603 8.657074 TTTTGGTCTATTCATATCTACGGTTG 57.343 34.615 0.00 0.00 0.00 3.77
5280 5604 6.971726 TGGTCTATTCATATCTACGGTTGT 57.028 37.500 0.00 0.00 0.00 3.32
5281 5605 6.978338 TGGTCTATTCATATCTACGGTTGTC 58.022 40.000 0.00 0.00 0.00 3.18
5282 5606 6.548251 TGGTCTATTCATATCTACGGTTGTCA 59.452 38.462 0.00 0.00 0.00 3.58
5283 5607 7.068962 TGGTCTATTCATATCTACGGTTGTCAA 59.931 37.037 0.00 0.00 0.00 3.18
5284 5608 8.088981 GGTCTATTCATATCTACGGTTGTCAAT 58.911 37.037 0.00 0.00 0.00 2.57
5285 5609 8.916654 GTCTATTCATATCTACGGTTGTCAATG 58.083 37.037 0.00 0.00 0.00 2.82
5286 5610 8.088365 TCTATTCATATCTACGGTTGTCAATGG 58.912 37.037 0.00 0.00 0.00 3.16
5287 5611 5.862678 TCATATCTACGGTTGTCAATGGA 57.137 39.130 0.00 0.00 0.00 3.41
5288 5612 5.842907 TCATATCTACGGTTGTCAATGGAG 58.157 41.667 0.00 0.00 0.00 3.86
5289 5613 3.543680 ATCTACGGTTGTCAATGGAGG 57.456 47.619 0.00 0.00 0.00 4.30
5290 5614 1.553248 TCTACGGTTGTCAATGGAGGG 59.447 52.381 0.00 0.00 0.00 4.30
5291 5615 0.035820 TACGGTTGTCAATGGAGGGC 60.036 55.000 0.00 0.00 0.00 5.19
5292 5616 2.046285 CGGTTGTCAATGGAGGGCC 61.046 63.158 0.00 0.00 0.00 5.80
5293 5617 1.384191 GGTTGTCAATGGAGGGCCT 59.616 57.895 5.25 5.25 34.31 5.19
5294 5618 0.623723 GGTTGTCAATGGAGGGCCTA 59.376 55.000 5.73 0.00 34.31 3.93
5295 5619 1.215423 GGTTGTCAATGGAGGGCCTAT 59.785 52.381 5.73 0.00 34.31 2.57
5296 5620 2.301346 GTTGTCAATGGAGGGCCTATG 58.699 52.381 5.73 3.70 34.31 2.23
5297 5621 1.595311 TGTCAATGGAGGGCCTATGT 58.405 50.000 5.73 0.00 34.31 2.29
5298 5622 1.922447 TGTCAATGGAGGGCCTATGTT 59.078 47.619 5.73 0.00 34.31 2.71
5299 5623 2.311542 TGTCAATGGAGGGCCTATGTTT 59.688 45.455 5.73 0.00 34.31 2.83
5300 5624 2.689983 GTCAATGGAGGGCCTATGTTTG 59.310 50.000 5.73 8.79 34.31 2.93
5301 5625 2.580322 TCAATGGAGGGCCTATGTTTGA 59.420 45.455 5.73 11.11 34.31 2.69
5302 5626 3.011144 TCAATGGAGGGCCTATGTTTGAA 59.989 43.478 5.73 0.00 34.31 2.69
5303 5627 2.806945 TGGAGGGCCTATGTTTGAAG 57.193 50.000 5.73 0.00 34.31 3.02
5304 5628 1.284785 TGGAGGGCCTATGTTTGAAGG 59.715 52.381 5.73 0.00 35.86 3.46
5305 5629 1.410224 GGAGGGCCTATGTTTGAAGGG 60.410 57.143 5.73 0.00 33.17 3.95
5309 5633 0.457443 GCCTATGTTTGAAGGGCTGC 59.543 55.000 0.00 0.00 39.68 5.25
5310 5634 1.106285 CCTATGTTTGAAGGGCTGCC 58.894 55.000 11.05 11.05 0.00 4.85
5311 5635 1.106285 CTATGTTTGAAGGGCTGCCC 58.894 55.000 30.57 30.57 45.90 5.36
5322 5646 3.550431 GCTGCCCCTCCTCGCATA 61.550 66.667 0.00 0.00 33.78 3.14
5323 5647 2.888447 GCTGCCCCTCCTCGCATAT 61.888 63.158 0.00 0.00 33.78 1.78
5324 5648 1.757306 CTGCCCCTCCTCGCATATT 59.243 57.895 0.00 0.00 33.78 1.28
5325 5649 0.109342 CTGCCCCTCCTCGCATATTT 59.891 55.000 0.00 0.00 33.78 1.40
5326 5650 0.179020 TGCCCCTCCTCGCATATTTG 60.179 55.000 0.00 0.00 0.00 2.32
5327 5651 0.179018 GCCCCTCCTCGCATATTTGT 60.179 55.000 0.00 0.00 0.00 2.83
5328 5652 1.071699 GCCCCTCCTCGCATATTTGTA 59.928 52.381 0.00 0.00 0.00 2.41
5329 5653 2.872038 GCCCCTCCTCGCATATTTGTAG 60.872 54.545 0.00 0.00 0.00 2.74
5330 5654 2.289694 CCCCTCCTCGCATATTTGTAGG 60.290 54.545 0.00 0.00 32.43 3.18
5331 5655 2.368875 CCCTCCTCGCATATTTGTAGGT 59.631 50.000 6.59 0.00 32.78 3.08
5332 5656 3.393800 CCTCCTCGCATATTTGTAGGTG 58.606 50.000 6.59 4.97 32.78 4.00
5333 5657 2.802816 CTCCTCGCATATTTGTAGGTGC 59.197 50.000 6.59 0.00 32.78 5.01
5334 5658 2.169561 TCCTCGCATATTTGTAGGTGCA 59.830 45.455 0.00 0.00 37.44 4.57
5335 5659 2.942376 CCTCGCATATTTGTAGGTGCAA 59.058 45.455 0.00 0.00 37.44 4.08
5336 5660 3.002656 CCTCGCATATTTGTAGGTGCAAG 59.997 47.826 0.00 0.00 37.44 4.01
5337 5661 2.942376 TCGCATATTTGTAGGTGCAAGG 59.058 45.455 0.00 0.00 37.44 3.61
5338 5662 2.033299 CGCATATTTGTAGGTGCAAGGG 59.967 50.000 0.00 0.00 37.44 3.95
5339 5663 3.287222 GCATATTTGTAGGTGCAAGGGA 58.713 45.455 0.00 0.00 37.52 4.20
5340 5664 3.066760 GCATATTTGTAGGTGCAAGGGAC 59.933 47.826 0.00 0.00 37.52 4.46
5341 5665 2.969821 ATTTGTAGGTGCAAGGGACA 57.030 45.000 0.00 0.00 0.00 4.02
5342 5666 2.969821 TTTGTAGGTGCAAGGGACAT 57.030 45.000 0.00 0.00 0.00 3.06
5343 5667 2.198827 TTGTAGGTGCAAGGGACATG 57.801 50.000 0.00 0.00 0.00 3.21
5344 5668 0.327924 TGTAGGTGCAAGGGACATGG 59.672 55.000 0.00 0.00 0.00 3.66
5345 5669 1.032114 GTAGGTGCAAGGGACATGGC 61.032 60.000 0.00 0.00 0.00 4.40
5346 5670 1.207488 TAGGTGCAAGGGACATGGCT 61.207 55.000 0.00 0.00 0.00 4.75
5347 5671 1.207488 AGGTGCAAGGGACATGGCTA 61.207 55.000 0.00 0.00 0.00 3.93
5348 5672 0.749454 GGTGCAAGGGACATGGCTAG 60.749 60.000 0.00 0.00 0.00 3.42
5349 5673 1.077501 TGCAAGGGACATGGCTAGC 60.078 57.895 6.04 6.04 0.00 3.42
5350 5674 1.225704 GCAAGGGACATGGCTAGCT 59.774 57.895 15.72 0.00 0.00 3.32
5351 5675 0.394899 GCAAGGGACATGGCTAGCTT 60.395 55.000 15.72 0.00 0.00 3.74
5352 5676 1.957113 GCAAGGGACATGGCTAGCTTT 60.957 52.381 15.72 0.00 0.00 3.51
5353 5677 1.747355 CAAGGGACATGGCTAGCTTTG 59.253 52.381 15.72 14.46 0.00 2.77
5354 5678 1.289160 AGGGACATGGCTAGCTTTGA 58.711 50.000 15.72 0.00 0.00 2.69
5355 5679 1.849039 AGGGACATGGCTAGCTTTGAT 59.151 47.619 15.72 3.90 0.00 2.57
5356 5680 1.952296 GGGACATGGCTAGCTTTGATG 59.048 52.381 15.72 13.50 0.00 3.07
5357 5681 2.421952 GGGACATGGCTAGCTTTGATGA 60.422 50.000 15.72 0.00 0.00 2.92
5358 5682 2.877168 GGACATGGCTAGCTTTGATGAG 59.123 50.000 15.72 0.00 0.00 2.90
5359 5683 3.432749 GGACATGGCTAGCTTTGATGAGA 60.433 47.826 15.72 0.00 0.00 3.27
5360 5684 3.539604 ACATGGCTAGCTTTGATGAGAC 58.460 45.455 15.72 0.00 0.00 3.36
5361 5685 2.299993 TGGCTAGCTTTGATGAGACG 57.700 50.000 15.72 0.00 0.00 4.18
5362 5686 1.824852 TGGCTAGCTTTGATGAGACGA 59.175 47.619 15.72 0.00 0.00 4.20
5363 5687 2.432146 TGGCTAGCTTTGATGAGACGAT 59.568 45.455 15.72 0.00 0.00 3.73
5364 5688 3.056304 GGCTAGCTTTGATGAGACGATC 58.944 50.000 15.72 0.00 0.00 3.69
5365 5689 3.056304 GCTAGCTTTGATGAGACGATCC 58.944 50.000 7.70 0.00 0.00 3.36
5366 5690 3.243704 GCTAGCTTTGATGAGACGATCCT 60.244 47.826 7.70 0.00 0.00 3.24
5367 5691 3.451141 AGCTTTGATGAGACGATCCTC 57.549 47.619 0.00 0.00 0.00 3.71
5368 5692 2.102252 AGCTTTGATGAGACGATCCTCC 59.898 50.000 0.00 0.00 32.32 4.30
5369 5693 2.102252 GCTTTGATGAGACGATCCTCCT 59.898 50.000 0.00 0.00 32.32 3.69
5370 5694 3.319405 GCTTTGATGAGACGATCCTCCTA 59.681 47.826 0.00 0.00 32.32 2.94
5371 5695 4.794655 GCTTTGATGAGACGATCCTCCTAC 60.795 50.000 0.00 0.00 32.32 3.18
5372 5696 3.866703 TGATGAGACGATCCTCCTACT 57.133 47.619 0.00 0.00 32.32 2.57
5373 5697 4.171878 TGATGAGACGATCCTCCTACTT 57.828 45.455 0.00 0.00 32.32 2.24
5374 5698 3.885901 TGATGAGACGATCCTCCTACTTG 59.114 47.826 0.00 0.00 32.32 3.16
5375 5699 2.656002 TGAGACGATCCTCCTACTTGG 58.344 52.381 0.00 0.00 32.32 3.61
5376 5700 1.957877 GAGACGATCCTCCTACTTGGG 59.042 57.143 0.00 0.00 36.20 4.12
5377 5701 0.389757 GACGATCCTCCTACTTGGGC 59.610 60.000 0.00 0.00 36.20 5.36
5378 5702 1.049289 ACGATCCTCCTACTTGGGCC 61.049 60.000 0.00 0.00 36.20 5.80
5379 5703 1.749033 GATCCTCCTACTTGGGCCG 59.251 63.158 0.00 0.00 36.20 6.13
5380 5704 2.384653 GATCCTCCTACTTGGGCCGC 62.385 65.000 0.00 0.00 36.20 6.53
5381 5705 4.176752 CCTCCTACTTGGGCCGCC 62.177 72.222 0.00 0.00 36.20 6.13
5382 5706 3.083997 CTCCTACTTGGGCCGCCT 61.084 66.667 9.86 0.00 36.20 5.52
5383 5707 3.391665 CTCCTACTTGGGCCGCCTG 62.392 68.421 9.86 2.79 36.20 4.85
5385 5709 4.408821 CTACTTGGGCCGCCTGCA 62.409 66.667 9.86 0.00 43.89 4.41
5386 5710 4.715523 TACTTGGGCCGCCTGCAC 62.716 66.667 9.86 0.00 46.61 4.57
5409 5733 3.256960 GGTGCACCCCCTCCAGAA 61.257 66.667 26.31 0.00 0.00 3.02
5410 5734 2.840753 GGTGCACCCCCTCCAGAAA 61.841 63.158 26.31 0.00 0.00 2.52
5411 5735 1.152830 GTGCACCCCCTCCAGAAAA 59.847 57.895 5.22 0.00 0.00 2.29
5412 5736 1.152830 TGCACCCCCTCCAGAAAAC 59.847 57.895 0.00 0.00 0.00 2.43
5413 5737 1.606601 GCACCCCCTCCAGAAAACC 60.607 63.158 0.00 0.00 0.00 3.27
5414 5738 1.076727 CACCCCCTCCAGAAAACCC 59.923 63.158 0.00 0.00 0.00 4.11
5415 5739 2.355115 CCCCCTCCAGAAAACCCG 59.645 66.667 0.00 0.00 0.00 5.28
5416 5740 2.228480 CCCCCTCCAGAAAACCCGA 61.228 63.158 0.00 0.00 0.00 5.14
5417 5741 1.299976 CCCCTCCAGAAAACCCGAG 59.700 63.158 0.00 0.00 0.00 4.63
5418 5742 1.377333 CCCTCCAGAAAACCCGAGC 60.377 63.158 0.00 0.00 0.00 5.03
5419 5743 1.377333 CCTCCAGAAAACCCGAGCC 60.377 63.158 0.00 0.00 0.00 4.70
5420 5744 1.679898 CTCCAGAAAACCCGAGCCT 59.320 57.895 0.00 0.00 0.00 4.58
5421 5745 0.391793 CTCCAGAAAACCCGAGCCTC 60.392 60.000 0.00 0.00 0.00 4.70
5422 5746 1.377333 CCAGAAAACCCGAGCCTCC 60.377 63.158 0.00 0.00 0.00 4.30
5423 5747 1.377333 CAGAAAACCCGAGCCTCCC 60.377 63.158 0.00 0.00 0.00 4.30
5424 5748 2.045242 GAAAACCCGAGCCTCCCC 60.045 66.667 0.00 0.00 0.00 4.81
5425 5749 3.640257 GAAAACCCGAGCCTCCCCC 62.640 68.421 0.00 0.00 0.00 5.40
5426 5750 4.677151 AAACCCGAGCCTCCCCCT 62.677 66.667 0.00 0.00 0.00 4.79
5427 5751 4.677151 AACCCGAGCCTCCCCCTT 62.677 66.667 0.00 0.00 0.00 3.95
5432 5756 3.403558 GAGCCTCCCCCTTCGCTT 61.404 66.667 0.00 0.00 0.00 4.68
5433 5757 3.689002 GAGCCTCCCCCTTCGCTTG 62.689 68.421 0.00 0.00 0.00 4.01
5435 5759 4.803908 CCTCCCCCTTCGCTTGCC 62.804 72.222 0.00 0.00 0.00 4.52
5436 5760 4.803908 CTCCCCCTTCGCTTGCCC 62.804 72.222 0.00 0.00 0.00 5.36
5439 5763 3.407967 CCCCTTCGCTTGCCCCTA 61.408 66.667 0.00 0.00 0.00 3.53
5440 5764 2.674754 CCCTTCGCTTGCCCCTAA 59.325 61.111 0.00 0.00 0.00 2.69
5441 5765 1.001393 CCCTTCGCTTGCCCCTAAA 60.001 57.895 0.00 0.00 0.00 1.85
5442 5766 1.032114 CCCTTCGCTTGCCCCTAAAG 61.032 60.000 0.00 0.00 0.00 1.85
5443 5767 1.032114 CCTTCGCTTGCCCCTAAAGG 61.032 60.000 0.00 0.00 0.00 3.11
5455 5779 0.256177 CCTAAAGGGAAGTGGGGAGC 59.744 60.000 0.00 0.00 37.23 4.70
5456 5780 0.107654 CTAAAGGGAAGTGGGGAGCG 60.108 60.000 0.00 0.00 0.00 5.03
5457 5781 2.193087 TAAAGGGAAGTGGGGAGCGC 62.193 60.000 0.00 0.00 0.00 5.92
5468 5792 3.373565 GGAGCGCCCCACTTTTGG 61.374 66.667 1.65 0.00 43.50 3.28
5469 5793 4.056125 GAGCGCCCCACTTTTGGC 62.056 66.667 2.29 0.00 42.35 4.52
5472 5796 3.989787 CGCCCCACTTTTGGCCAC 61.990 66.667 3.88 0.00 45.07 5.01
5473 5797 3.625897 GCCCCACTTTTGGCCACC 61.626 66.667 3.88 0.00 42.35 4.61
5474 5798 2.201210 CCCCACTTTTGGCCACCT 59.799 61.111 3.88 0.00 42.35 4.00
5475 5799 1.459348 CCCCACTTTTGGCCACCTT 60.459 57.895 3.88 0.00 42.35 3.50
5476 5800 1.747774 CCCACTTTTGGCCACCTTG 59.252 57.895 3.88 0.00 42.35 3.61
5477 5801 1.747774 CCACTTTTGGCCACCTTGG 59.252 57.895 3.88 6.16 41.55 3.61
5486 5810 3.379880 CCACCTTGGCCAATGTGG 58.620 61.111 40.92 40.92 45.74 4.17
5487 5811 4.517663 CACCTTGGCCAATGTGGA 57.482 55.556 34.07 9.04 40.96 4.02
5488 5812 2.980541 CACCTTGGCCAATGTGGAT 58.019 52.632 34.07 15.49 40.96 3.41
5489 5813 0.533491 CACCTTGGCCAATGTGGATG 59.467 55.000 34.07 21.05 40.96 3.51
5490 5814 1.259840 ACCTTGGCCAATGTGGATGC 61.260 55.000 23.67 0.00 40.96 3.91
5491 5815 1.518774 CTTGGCCAATGTGGATGCC 59.481 57.895 20.85 0.00 40.96 4.40
5492 5816 1.963464 CTTGGCCAATGTGGATGCCC 61.963 60.000 20.85 0.00 40.96 5.36
5493 5817 3.156556 GGCCAATGTGGATGCCCC 61.157 66.667 0.00 0.00 40.96 5.80
5494 5818 3.156556 GCCAATGTGGATGCCCCC 61.157 66.667 0.00 0.00 40.96 5.40
5495 5819 2.363760 CCAATGTGGATGCCCCCA 59.636 61.111 0.00 0.00 40.96 4.96
5506 5830 4.822628 GCCCCCACTTGGCCTAGC 62.823 72.222 14.60 0.00 43.33 3.42
5507 5831 3.017581 CCCCCACTTGGCCTAGCT 61.018 66.667 14.60 0.00 0.00 3.32
5508 5832 1.692749 CCCCCACTTGGCCTAGCTA 60.693 63.158 14.60 0.00 0.00 3.32
5509 5833 1.279025 CCCCCACTTGGCCTAGCTAA 61.279 60.000 14.60 0.00 0.00 3.09
5510 5834 0.846693 CCCCACTTGGCCTAGCTAAT 59.153 55.000 14.60 0.00 0.00 1.73
5511 5835 1.477558 CCCCACTTGGCCTAGCTAATG 60.478 57.143 14.60 4.90 0.00 1.90
5512 5836 1.477558 CCCACTTGGCCTAGCTAATGG 60.478 57.143 14.60 13.50 32.37 3.16
5513 5837 1.477558 CCACTTGGCCTAGCTAATGGG 60.478 57.143 14.60 3.06 30.64 4.00
5514 5838 0.846693 ACTTGGCCTAGCTAATGGGG 59.153 55.000 14.60 0.00 0.00 4.96
5515 5839 1.140312 CTTGGCCTAGCTAATGGGGA 58.860 55.000 3.32 0.00 0.00 4.81
5516 5840 1.707427 CTTGGCCTAGCTAATGGGGAT 59.293 52.381 3.32 0.00 0.00 3.85
5517 5841 1.067295 TGGCCTAGCTAATGGGGATG 58.933 55.000 3.32 0.00 0.00 3.51
5518 5842 0.322906 GGCCTAGCTAATGGGGATGC 60.323 60.000 0.00 0.00 0.00 3.91
5519 5843 0.322906 GCCTAGCTAATGGGGATGCC 60.323 60.000 0.00 0.00 0.00 4.40
5520 5844 1.366319 CCTAGCTAATGGGGATGCCT 58.634 55.000 2.19 0.00 0.00 4.75
5521 5845 1.707427 CCTAGCTAATGGGGATGCCTT 59.293 52.381 2.19 0.00 0.00 4.35
5522 5846 2.290577 CCTAGCTAATGGGGATGCCTTC 60.291 54.545 2.19 0.00 0.00 3.46
5523 5847 1.225373 AGCTAATGGGGATGCCTTCA 58.775 50.000 2.19 0.00 0.00 3.02
5524 5848 1.133668 AGCTAATGGGGATGCCTTCAC 60.134 52.381 2.19 0.00 0.00 3.18
5525 5849 1.133668 GCTAATGGGGATGCCTTCACT 60.134 52.381 2.19 0.00 0.00 3.41
5526 5850 2.687914 GCTAATGGGGATGCCTTCACTT 60.688 50.000 2.19 0.00 0.00 3.16
5527 5851 1.856629 AATGGGGATGCCTTCACTTG 58.143 50.000 2.19 0.00 0.00 3.16
5528 5852 0.032813 ATGGGGATGCCTTCACTTGG 60.033 55.000 2.19 0.00 0.00 3.61
5529 5853 1.380380 GGGGATGCCTTCACTTGGG 60.380 63.158 2.19 0.00 0.00 4.12
5534 5858 4.645809 GCCTTCACTTGGGCCTAG 57.354 61.111 13.66 13.66 42.30 3.02
5535 5859 1.750780 GCCTTCACTTGGGCCTAGC 60.751 63.158 15.16 0.00 42.30 3.42
5546 5870 2.922234 GCCTAGCCAATGGAGCCT 59.078 61.111 2.05 0.00 0.00 4.58
5547 5871 1.228094 GCCTAGCCAATGGAGCCTC 60.228 63.158 2.05 0.00 0.00 4.70
5548 5872 1.704007 GCCTAGCCAATGGAGCCTCT 61.704 60.000 2.05 0.00 0.00 3.69
5549 5873 0.396060 CCTAGCCAATGGAGCCTCTC 59.604 60.000 2.05 0.00 0.00 3.20
5550 5874 1.126488 CTAGCCAATGGAGCCTCTCA 58.874 55.000 2.05 0.00 31.08 3.27
5551 5875 1.070445 CTAGCCAATGGAGCCTCTCAG 59.930 57.143 2.05 0.00 31.08 3.35
5552 5876 0.619832 AGCCAATGGAGCCTCTCAGA 60.620 55.000 2.05 0.00 31.08 3.27
5553 5877 0.254178 GCCAATGGAGCCTCTCAGAA 59.746 55.000 2.05 0.00 31.08 3.02
5554 5878 2.016096 GCCAATGGAGCCTCTCAGAAC 61.016 57.143 2.05 0.00 31.08 3.01
5555 5879 1.558756 CCAATGGAGCCTCTCAGAACT 59.441 52.381 0.00 0.00 31.08 3.01
5556 5880 2.026449 CCAATGGAGCCTCTCAGAACTT 60.026 50.000 0.00 0.00 31.08 2.66
5557 5881 3.560882 CCAATGGAGCCTCTCAGAACTTT 60.561 47.826 0.00 0.00 31.08 2.66
5558 5882 4.077822 CAATGGAGCCTCTCAGAACTTTT 58.922 43.478 0.00 0.00 31.08 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 2.849880 ATCGGCATTTTTCATGGACG 57.150 45.000 0.00 0.00 0.00 4.79
167 168 5.472137 CCTTGGGAAATTGTTTCTCTTCGTA 59.528 40.000 4.18 0.00 40.83 3.43
168 169 4.278419 CCTTGGGAAATTGTTTCTCTTCGT 59.722 41.667 4.18 0.00 40.83 3.85
180 181 5.161886 TCTTCCATTTTCCCTTGGGAAATT 58.838 37.500 28.24 22.80 37.20 1.82
265 267 4.507021 TCGTATGATCGTATCTATCTCGGC 59.493 45.833 0.00 0.00 0.00 5.54
267 269 5.454877 TCGTCGTATGATCGTATCTATCTCG 59.545 44.000 0.00 0.00 0.00 4.04
268 270 6.558252 CGTCGTCGTATGATCGTATCTATCTC 60.558 46.154 0.00 0.00 0.00 2.75
269 271 5.229678 CGTCGTCGTATGATCGTATCTATCT 59.770 44.000 0.00 0.00 0.00 1.98
287 289 1.853319 CCTCACAAACTGCGTCGTC 59.147 57.895 0.00 0.00 0.00 4.20
300 302 1.748122 CTCTGCCCACATGCCTCAC 60.748 63.158 0.00 0.00 0.00 3.51
301 303 1.491274 TTCTCTGCCCACATGCCTCA 61.491 55.000 0.00 0.00 0.00 3.86
332 350 2.176792 GCTTGCACGGTAAGCTGC 59.823 61.111 15.66 3.43 45.34 5.25
356 374 3.941188 ACGGCCAGTGGTGTGGAG 61.941 66.667 11.74 0.00 40.44 3.86
429 453 1.062880 ACCGTGTTATTATTTGGCGCG 59.937 47.619 0.00 0.00 0.00 6.86
482 522 1.391933 GGCCGAATTTGGGGGATCAC 61.392 60.000 13.87 0.00 0.00 3.06
564 605 9.768662 TGTTTAGTTTAAGTAGGACTGGTTTAG 57.231 33.333 0.00 0.00 0.00 1.85
565 606 9.768662 CTGTTTAGTTTAAGTAGGACTGGTTTA 57.231 33.333 0.00 0.00 0.00 2.01
566 607 8.488668 TCTGTTTAGTTTAAGTAGGACTGGTTT 58.511 33.333 0.00 0.00 0.00 3.27
697 759 2.177529 TTAAGAGGAGGGCGAGGGGT 62.178 60.000 0.00 0.00 0.00 4.95
736 798 1.408969 GGTAGGCTTGGAGAGAGAGG 58.591 60.000 0.00 0.00 0.00 3.69
737 799 1.028905 CGGTAGGCTTGGAGAGAGAG 58.971 60.000 0.00 0.00 0.00 3.20
738 800 0.331954 ACGGTAGGCTTGGAGAGAGA 59.668 55.000 0.00 0.00 0.00 3.10
739 801 1.187087 AACGGTAGGCTTGGAGAGAG 58.813 55.000 0.00 0.00 0.00 3.20
754 816 0.890090 TTACGGGGCAAGGAAAACGG 60.890 55.000 0.00 0.00 0.00 4.44
860 923 3.689002 GAGCCCAGTAGCCCAGCAC 62.689 68.421 0.00 0.00 0.00 4.40
862 925 3.086600 AGAGCCCAGTAGCCCAGC 61.087 66.667 0.00 0.00 0.00 4.85
863 926 2.906458 CAGAGCCCAGTAGCCCAG 59.094 66.667 0.00 0.00 0.00 4.45
1060 1125 7.276218 TGAAATGAAGAACACAAGCAAGAAAAG 59.724 33.333 0.00 0.00 0.00 2.27
1062 1127 6.531240 GTGAAATGAAGAACACAAGCAAGAAA 59.469 34.615 0.00 0.00 34.05 2.52
1068 1133 4.209452 TCGTGAAATGAAGAACACAAGC 57.791 40.909 0.00 0.00 33.56 4.01
1113 1178 2.808543 GAGAAACAGCAACAGTACTGGG 59.191 50.000 26.12 18.21 38.25 4.45
1114 1179 3.466836 TGAGAAACAGCAACAGTACTGG 58.533 45.455 26.12 10.99 38.25 4.00
1119 1184 5.841957 AAGAAATGAGAAACAGCAACAGT 57.158 34.783 0.00 0.00 0.00 3.55
1202 1290 6.485984 AGAGCAGCACTATTATTGATTTCTGG 59.514 38.462 0.00 0.00 0.00 3.86
1205 1293 9.578439 AAAAAGAGCAGCACTATTATTGATTTC 57.422 29.630 0.00 0.00 0.00 2.17
1215 1303 1.821136 GGGCAAAAAGAGCAGCACTAT 59.179 47.619 0.00 0.00 0.00 2.12
1234 1322 1.135024 CATGGCCAACTTCAAATCGGG 60.135 52.381 10.96 0.00 0.00 5.14
1251 1339 4.002982 TCGAGGTTGAAGTCATTTCCATG 58.997 43.478 0.00 0.00 34.77 3.66
1261 1349 4.471904 TGCATTCTATCGAGGTTGAAGT 57.528 40.909 0.00 0.00 0.00 3.01
1297 1403 7.715266 ATCTTCCTTTTTACCTACTACGACT 57.285 36.000 0.00 0.00 0.00 4.18
1453 1568 1.448717 GCGAGAGTTGGGAGAAGGC 60.449 63.158 0.00 0.00 0.00 4.35
1457 1572 3.760035 GGCGCGAGAGTTGGGAGA 61.760 66.667 12.10 0.00 0.00 3.71
1503 1618 1.407437 CCATGACTGGGAGTAAGTGCC 60.407 57.143 0.00 0.00 39.04 5.01
1556 1671 2.022527 AGAAAGGGGAGTAGAGCTGGAT 60.023 50.000 0.00 0.00 0.00 3.41
1629 1757 2.292719 GGGGACTCCTTACCAAGTAGGA 60.293 54.545 0.00 0.00 41.22 2.94
1630 1758 2.117051 GGGGACTCCTTACCAAGTAGG 58.883 57.143 0.00 0.00 45.67 3.18
1631 1759 2.766828 CTGGGGACTCCTTACCAAGTAG 59.233 54.545 0.00 0.00 36.20 2.57
1632 1760 2.829023 CTGGGGACTCCTTACCAAGTA 58.171 52.381 0.00 0.00 36.20 2.24
1645 1773 2.484287 TAGCCAAGCAAGCTGGGGAC 62.484 60.000 16.93 1.53 41.71 4.46
1728 1879 3.385193 AAAAAGGCAAACCGAATCCTG 57.615 42.857 0.00 0.00 42.76 3.86
1778 1936 0.681733 CCCATGGGATCAGACCGTAG 59.318 60.000 28.27 0.00 37.50 3.51
1779 1937 1.407656 GCCCATGGGATCAGACCGTA 61.408 60.000 36.00 0.00 37.50 4.02
1780 1938 2.746375 GCCCATGGGATCAGACCGT 61.746 63.158 36.00 0.00 37.50 4.83
1781 1939 2.111878 GCCCATGGGATCAGACCG 59.888 66.667 36.00 4.56 37.50 4.79
1782 1940 2.349100 CTGGCCCATGGGATCAGACC 62.349 65.000 33.65 25.22 39.04 3.85
1783 1941 1.150081 CTGGCCCATGGGATCAGAC 59.850 63.158 33.65 18.61 39.04 3.51
1784 1942 2.080536 CCTGGCCCATGGGATCAGA 61.081 63.158 36.37 17.45 39.04 3.27
1785 1943 2.080536 TCCTGGCCCATGGGATCAG 61.081 63.158 36.00 33.32 37.62 2.90
1786 1944 2.044280 TCCTGGCCCATGGGATCA 59.956 61.111 36.00 27.32 37.50 2.92
1787 1945 0.768221 TAGTCCTGGCCCATGGGATC 60.768 60.000 36.00 24.30 37.50 3.36
1788 1946 0.769776 CTAGTCCTGGCCCATGGGAT 60.770 60.000 36.00 12.12 37.50 3.85
1789 1947 1.384502 CTAGTCCTGGCCCATGGGA 60.385 63.158 36.00 14.02 37.50 4.37
1790 1948 1.281925 AACTAGTCCTGGCCCATGGG 61.282 60.000 27.87 27.87 38.57 4.00
1791 1949 0.181350 GAACTAGTCCTGGCCCATGG 59.819 60.000 4.14 4.14 0.00 3.66
1792 1950 0.179073 CGAACTAGTCCTGGCCCATG 60.179 60.000 0.00 0.00 0.00 3.66
1793 1951 1.338136 CCGAACTAGTCCTGGCCCAT 61.338 60.000 0.00 0.00 0.00 4.00
1794 1952 1.987855 CCGAACTAGTCCTGGCCCA 60.988 63.158 0.00 0.00 0.00 5.36
1795 1953 1.551019 AACCGAACTAGTCCTGGCCC 61.551 60.000 0.00 0.00 0.00 5.80
1796 1954 0.108281 GAACCGAACTAGTCCTGGCC 60.108 60.000 0.00 0.00 0.00 5.36
1797 1955 0.458025 CGAACCGAACTAGTCCTGGC 60.458 60.000 0.00 0.00 0.00 4.85
1798 1956 0.172803 CCGAACCGAACTAGTCCTGG 59.827 60.000 0.00 0.79 0.00 4.45
1799 1957 0.172803 CCCGAACCGAACTAGTCCTG 59.827 60.000 0.00 0.00 0.00 3.86
1800 1958 0.038744 TCCCGAACCGAACTAGTCCT 59.961 55.000 0.00 0.00 0.00 3.85
1801 1959 1.109609 ATCCCGAACCGAACTAGTCC 58.890 55.000 0.00 0.00 0.00 3.85
1802 1960 1.801765 GCATCCCGAACCGAACTAGTC 60.802 57.143 0.00 0.00 0.00 2.59
1803 1961 0.175073 GCATCCCGAACCGAACTAGT 59.825 55.000 0.00 0.00 0.00 2.57
1837 2119 5.111989 TCAGATATACAGAACAGCAGCAAC 58.888 41.667 0.00 0.00 0.00 4.17
1841 2123 7.208777 AGAACATCAGATATACAGAACAGCAG 58.791 38.462 0.00 0.00 0.00 4.24
1872 2154 7.959175 TCCGTATAACTGATAGTAAGGCAATT 58.041 34.615 0.00 0.00 0.00 2.32
1873 2155 7.232941 ACTCCGTATAACTGATAGTAAGGCAAT 59.767 37.037 0.00 0.00 0.00 3.56
1874 2156 6.548622 ACTCCGTATAACTGATAGTAAGGCAA 59.451 38.462 0.00 0.00 0.00 4.52
1875 2157 6.066690 ACTCCGTATAACTGATAGTAAGGCA 58.933 40.000 0.00 0.00 0.00 4.75
1876 2158 6.572167 ACTCCGTATAACTGATAGTAAGGC 57.428 41.667 0.00 0.00 0.00 4.35
1877 2159 7.737395 CGTACTCCGTATAACTGATAGTAAGG 58.263 42.308 0.00 0.00 0.00 2.69
1895 2177 1.203994 ACACTGGCATGTACGTACTCC 59.796 52.381 25.12 21.41 0.00 3.85
1896 2178 2.649331 ACACTGGCATGTACGTACTC 57.351 50.000 25.12 14.22 0.00 2.59
1897 2179 2.561419 AGAACACTGGCATGTACGTACT 59.439 45.455 25.12 9.27 30.75 2.73
1898 2180 2.955614 AGAACACTGGCATGTACGTAC 58.044 47.619 18.90 18.90 30.75 3.67
1899 2181 3.322369 CAAGAACACTGGCATGTACGTA 58.678 45.455 0.00 0.00 30.75 3.57
1900 2182 2.143122 CAAGAACACTGGCATGTACGT 58.857 47.619 0.00 0.00 30.75 3.57
1901 2183 1.135972 GCAAGAACACTGGCATGTACG 60.136 52.381 0.00 0.00 31.46 3.67
1902 2184 2.154462 AGCAAGAACACTGGCATGTAC 58.846 47.619 0.00 0.00 33.38 2.90
2023 2312 4.598022 TCATAATGTTGGCCTGAATGACA 58.402 39.130 3.32 0.00 0.00 3.58
2024 2313 5.508489 CCATCATAATGTTGGCCTGAATGAC 60.508 44.000 3.32 0.00 31.29 3.06
2025 2314 4.585581 CCATCATAATGTTGGCCTGAATGA 59.414 41.667 3.32 5.33 31.29 2.57
2026 2315 4.262292 CCCATCATAATGTTGGCCTGAATG 60.262 45.833 3.32 0.00 36.22 2.67
2027 2316 3.899360 CCCATCATAATGTTGGCCTGAAT 59.101 43.478 3.32 0.00 36.22 2.57
2028 2317 3.298619 CCCATCATAATGTTGGCCTGAA 58.701 45.455 3.32 0.00 36.22 3.02
2067 2356 1.081892 CAAGATCGCCAAGGTCACTG 58.918 55.000 0.00 0.00 30.60 3.66
2068 2357 0.687354 ACAAGATCGCCAAGGTCACT 59.313 50.000 0.00 0.00 30.60 3.41
2139 2437 1.056660 CCCACAGTCAACCAGGTAGT 58.943 55.000 0.00 0.00 0.00 2.73
2221 2519 4.785376 AGAATATCTTGGGAGGTTGACACT 59.215 41.667 0.00 0.00 0.00 3.55
2288 2586 1.745489 GGGCGGTCTGGTAAAGCAG 60.745 63.158 2.75 2.75 0.00 4.24
2382 2680 3.491766 AACTCTGGTAGATGAAGGGGA 57.508 47.619 0.00 0.00 0.00 4.81
2428 2726 0.602638 GCACATCTTGGGTCGACACA 60.603 55.000 18.52 18.52 0.00 3.72
2479 2777 2.896801 CTTGAACAGCGGCGCAGTT 61.897 57.895 36.82 36.82 40.75 3.16
2482 2780 3.969710 TATTCCTTGAACAGCGGCGCA 62.970 52.381 35.02 10.19 0.00 6.09
2611 2909 4.460263 GGTTGACCATATTGGCTACATCA 58.540 43.478 0.00 0.00 42.67 3.07
2718 3016 2.447244 CCTCGAGAGGGTATCATTGC 57.553 55.000 15.71 0.00 44.87 3.56
2791 3089 4.147321 ACTTGATAGGCTTGCCATATTGG 58.853 43.478 14.54 2.80 41.55 3.16
2815 3113 2.193087 GAGTTGCCCCGCCTTTCCTA 62.193 60.000 0.00 0.00 0.00 2.94
2885 3183 0.100503 AGTGCGTTGGAAGTGTTTGC 59.899 50.000 0.00 0.00 0.00 3.68
2893 3191 3.129462 TCATGTTGAAAAGTGCGTTGGAA 59.871 39.130 0.00 0.00 0.00 3.53
3196 3494 4.070716 CACTGCCCATCTTCATAATCTCC 58.929 47.826 0.00 0.00 0.00 3.71
3373 3671 2.238395 AGAGAAAGGCATCCAGGTCTTC 59.762 50.000 0.00 0.00 29.90 2.87
3484 3782 1.340889 TGGAGCACATTGAAGGCAAAC 59.659 47.619 0.00 0.00 37.59 2.93
3814 4112 0.463295 CAATGCAGATCTCCAGGCGT 60.463 55.000 0.00 0.00 0.00 5.68
3817 4115 1.814634 GCTCCAATGCAGATCTCCAGG 60.815 57.143 0.00 0.00 0.00 4.45
3865 4163 0.618458 TAATGGCCTTCGCAGAACCT 59.382 50.000 3.32 0.00 45.90 3.50
3874 4172 1.134220 TCACGGTGGATAATGGCCTTC 60.134 52.381 8.50 0.00 0.00 3.46
3925 4223 1.541588 GCGACTTTGGCAAGGAGATTT 59.458 47.619 16.87 0.00 33.82 2.17
3967 4265 3.457625 CTGATCCAGCTCAGGCCCG 62.458 68.421 0.00 0.00 39.20 6.13
4192 4490 1.515020 GACGATCTGGTGCAGCTCT 59.485 57.895 18.08 1.08 0.00 4.09
4426 4724 1.000521 CTCCATGGCACCCACATGT 60.001 57.895 6.96 0.00 43.15 3.21
4531 4829 0.392193 CCTCGGCTTTGATCAGCTGT 60.392 55.000 14.67 0.42 45.25 4.40
4575 4873 1.064389 ACCTCTACCGGTACCCTACAC 60.064 57.143 11.16 0.00 34.94 2.90
4731 5038 2.325583 TCTGATAAATCGTGTGCCCC 57.674 50.000 0.00 0.00 0.00 5.80
4836 5156 2.298729 GAGAAGAGAGTGCACCAGTTCT 59.701 50.000 14.63 16.03 0.00 3.01
4886 5206 1.243342 TGCACACATTGGCTGCTACC 61.243 55.000 0.00 0.00 0.00 3.18
4889 5209 0.245539 GATTGCACACATTGGCTGCT 59.754 50.000 0.00 0.00 0.00 4.24
4919 5239 7.042456 GCTTCATATCTTGAGAATTTGTCGCTA 60.042 37.037 0.00 0.00 35.27 4.26
4925 5245 8.899427 TCCTAGCTTCATATCTTGAGAATTTG 57.101 34.615 0.00 0.00 35.27 2.32
5022 5345 0.257328 TCTGCAAACCAGTGGGAACA 59.743 50.000 15.21 5.23 42.38 3.18
5023 5346 0.668535 GTCTGCAAACCAGTGGGAAC 59.331 55.000 15.21 0.20 42.38 3.62
5024 5347 0.467290 GGTCTGCAAACCAGTGGGAA 60.467 55.000 15.21 0.00 42.38 3.97
5025 5348 1.150536 GGTCTGCAAACCAGTGGGA 59.849 57.895 15.21 0.00 42.38 4.37
5072 5396 2.024319 AGCTGTTTCTCTCGCGTGC 61.024 57.895 5.77 0.00 0.00 5.34
5074 5398 2.024319 GCAGCTGTTTCTCTCGCGT 61.024 57.895 16.64 0.00 0.00 6.01
5095 5419 3.809374 GATGAACCCTAGGCGGCGG 62.809 68.421 9.78 0.77 0.00 6.13
5096 5420 2.280186 GATGAACCCTAGGCGGCG 60.280 66.667 2.05 0.51 0.00 6.46
5097 5421 2.111251 GGATGAACCCTAGGCGGC 59.889 66.667 2.05 0.00 0.00 6.53
5106 5430 0.259938 ATGGAGGCTTGGGATGAACC 59.740 55.000 0.00 0.00 38.08 3.62
5107 5431 1.213926 AGATGGAGGCTTGGGATGAAC 59.786 52.381 0.00 0.00 0.00 3.18
5108 5432 1.492176 GAGATGGAGGCTTGGGATGAA 59.508 52.381 0.00 0.00 0.00 2.57
5109 5433 1.135094 GAGATGGAGGCTTGGGATGA 58.865 55.000 0.00 0.00 0.00 2.92
5110 5434 0.110104 GGAGATGGAGGCTTGGGATG 59.890 60.000 0.00 0.00 0.00 3.51
5111 5435 1.414061 CGGAGATGGAGGCTTGGGAT 61.414 60.000 0.00 0.00 0.00 3.85
5112 5436 2.066393 CGGAGATGGAGGCTTGGGA 61.066 63.158 0.00 0.00 0.00 4.37
5113 5437 2.507944 CGGAGATGGAGGCTTGGG 59.492 66.667 0.00 0.00 0.00 4.12
5114 5438 2.203126 GCGGAGATGGAGGCTTGG 60.203 66.667 0.00 0.00 0.00 3.61
5115 5439 2.203126 GGCGGAGATGGAGGCTTG 60.203 66.667 0.00 0.00 0.00 4.01
5116 5440 3.483869 GGGCGGAGATGGAGGCTT 61.484 66.667 0.00 0.00 0.00 4.35
5132 5456 0.322906 GCCAGACAAAAGAGAGGGGG 60.323 60.000 0.00 0.00 0.00 5.40
5133 5457 0.674895 CGCCAGACAAAAGAGAGGGG 60.675 60.000 0.00 0.00 0.00 4.79
5134 5458 0.674895 CCGCCAGACAAAAGAGAGGG 60.675 60.000 0.00 0.00 0.00 4.30
5135 5459 1.301677 GCCGCCAGACAAAAGAGAGG 61.302 60.000 0.00 0.00 0.00 3.69
5136 5460 0.321122 AGCCGCCAGACAAAAGAGAG 60.321 55.000 0.00 0.00 0.00 3.20
5137 5461 0.973632 TAGCCGCCAGACAAAAGAGA 59.026 50.000 0.00 0.00 0.00 3.10
5138 5462 1.079503 GTAGCCGCCAGACAAAAGAG 58.920 55.000 0.00 0.00 0.00 2.85
5139 5463 0.669318 CGTAGCCGCCAGACAAAAGA 60.669 55.000 0.00 0.00 0.00 2.52
5140 5464 0.949105 ACGTAGCCGCCAGACAAAAG 60.949 55.000 0.00 0.00 37.70 2.27
5141 5465 0.947180 GACGTAGCCGCCAGACAAAA 60.947 55.000 0.00 0.00 37.70 2.44
5142 5466 1.373748 GACGTAGCCGCCAGACAAA 60.374 57.895 0.00 0.00 37.70 2.83
5143 5467 2.260434 GACGTAGCCGCCAGACAA 59.740 61.111 0.00 0.00 37.70 3.18
5144 5468 2.986979 TGACGTAGCCGCCAGACA 60.987 61.111 0.00 0.00 37.70 3.41
5145 5469 2.202623 CTGACGTAGCCGCCAGAC 60.203 66.667 0.00 0.00 46.09 3.51
5146 5470 4.129737 GCTGACGTAGCCGCCAGA 62.130 66.667 3.06 0.00 46.09 3.86
5154 5478 1.601903 CTCCTCTAGCTGCTGACGTAG 59.398 57.143 13.43 0.69 0.00 3.51
5155 5479 1.065345 ACTCCTCTAGCTGCTGACGTA 60.065 52.381 13.43 0.00 0.00 3.57
5156 5480 0.322997 ACTCCTCTAGCTGCTGACGT 60.323 55.000 13.43 0.00 0.00 4.34
5157 5481 1.601903 CTACTCCTCTAGCTGCTGACG 59.398 57.143 13.43 0.61 0.00 4.35
5158 5482 1.953686 CCTACTCCTCTAGCTGCTGAC 59.046 57.143 13.43 0.00 0.00 3.51
5159 5483 1.133637 CCCTACTCCTCTAGCTGCTGA 60.134 57.143 13.43 7.00 0.00 4.26
5160 5484 1.327303 CCCTACTCCTCTAGCTGCTG 58.673 60.000 13.43 2.51 0.00 4.41
5161 5485 0.187361 CCCCTACTCCTCTAGCTGCT 59.813 60.000 7.57 7.57 0.00 4.24
5162 5486 1.468506 GCCCCTACTCCTCTAGCTGC 61.469 65.000 0.00 0.00 0.00 5.25
5163 5487 0.830023 GGCCCCTACTCCTCTAGCTG 60.830 65.000 0.00 0.00 0.00 4.24
5164 5488 1.544703 GGCCCCTACTCCTCTAGCT 59.455 63.158 0.00 0.00 0.00 3.32
5165 5489 1.904378 CGGCCCCTACTCCTCTAGC 60.904 68.421 0.00 0.00 0.00 3.42
5166 5490 1.228613 CCGGCCCCTACTCCTCTAG 60.229 68.421 0.00 0.00 0.00 2.43
5167 5491 2.932736 CCGGCCCCTACTCCTCTA 59.067 66.667 0.00 0.00 0.00 2.43
5168 5492 4.862823 GCCGGCCCCTACTCCTCT 62.863 72.222 18.11 0.00 0.00 3.69
5172 5496 4.862823 AGAGGCCGGCCCCTACTC 62.863 72.222 41.72 30.60 34.69 2.59
5173 5497 4.416601 AAGAGGCCGGCCCCTACT 62.417 66.667 41.72 29.81 34.69 2.57
5174 5498 3.862991 GAAGAGGCCGGCCCCTAC 61.863 72.222 41.72 28.15 34.69 3.18
5178 5502 4.717313 AAACGAAGAGGCCGGCCC 62.717 66.667 41.72 31.06 36.58 5.80
5179 5503 2.265904 AAAAACGAAGAGGCCGGCC 61.266 57.895 39.29 39.29 0.00 6.13
5180 5504 3.351450 AAAAACGAAGAGGCCGGC 58.649 55.556 21.18 21.18 0.00 6.13
5210 5534 1.403679 CGTCACCTTGCCACTGAAAAA 59.596 47.619 0.00 0.00 0.00 1.94
5211 5535 1.021202 CGTCACCTTGCCACTGAAAA 58.979 50.000 0.00 0.00 0.00 2.29
5212 5536 0.179234 TCGTCACCTTGCCACTGAAA 59.821 50.000 0.00 0.00 0.00 2.69
5213 5537 0.531974 GTCGTCACCTTGCCACTGAA 60.532 55.000 0.00 0.00 0.00 3.02
5214 5538 1.069090 GTCGTCACCTTGCCACTGA 59.931 57.895 0.00 0.00 0.00 3.41
5215 5539 2.310233 CGTCGTCACCTTGCCACTG 61.310 63.158 0.00 0.00 0.00 3.66
5216 5540 2.029073 CGTCGTCACCTTGCCACT 59.971 61.111 0.00 0.00 0.00 4.00
5217 5541 2.028484 TCGTCGTCACCTTGCCAC 59.972 61.111 0.00 0.00 0.00 5.01
5218 5542 2.028484 GTCGTCGTCACCTTGCCA 59.972 61.111 0.00 0.00 0.00 4.92
5219 5543 2.814183 ATCGTCGTCGTCACCTTGCC 62.814 60.000 1.33 0.00 38.33 4.52
5220 5544 1.443872 ATCGTCGTCGTCACCTTGC 60.444 57.895 1.33 0.00 38.33 4.01
5221 5545 0.386858 ACATCGTCGTCGTCACCTTG 60.387 55.000 1.33 0.00 38.33 3.61
5222 5546 0.313043 AACATCGTCGTCGTCACCTT 59.687 50.000 1.33 0.00 38.33 3.50
5223 5547 1.135859 GTAACATCGTCGTCGTCACCT 60.136 52.381 1.33 0.00 38.33 4.00
5224 5548 1.253999 GTAACATCGTCGTCGTCACC 58.746 55.000 1.33 0.00 38.33 4.02
5225 5549 1.954437 TGTAACATCGTCGTCGTCAC 58.046 50.000 1.33 0.00 38.33 3.67
5226 5550 2.684754 TTGTAACATCGTCGTCGTCA 57.315 45.000 1.33 0.00 38.33 4.35
5227 5551 4.203764 CCTTATTGTAACATCGTCGTCGTC 59.796 45.833 1.33 0.00 38.33 4.20
5228 5552 4.100529 CCTTATTGTAACATCGTCGTCGT 58.899 43.478 1.33 0.00 38.33 4.34
5229 5553 4.100529 ACCTTATTGTAACATCGTCGTCG 58.899 43.478 0.00 0.00 38.55 5.12
5230 5554 5.338365 AGACCTTATTGTAACATCGTCGTC 58.662 41.667 0.00 0.00 0.00 4.20
5231 5555 5.320549 AGACCTTATTGTAACATCGTCGT 57.679 39.130 0.00 0.00 0.00 4.34
5232 5556 6.642683 AAAGACCTTATTGTAACATCGTCG 57.357 37.500 0.00 0.00 0.00 5.12
5233 5557 7.749126 CCAAAAAGACCTTATTGTAACATCGTC 59.251 37.037 0.00 0.00 0.00 4.20
5234 5558 7.229907 ACCAAAAAGACCTTATTGTAACATCGT 59.770 33.333 0.00 0.00 0.00 3.73
5235 5559 7.590279 ACCAAAAAGACCTTATTGTAACATCG 58.410 34.615 0.00 0.00 0.00 3.84
5236 5560 8.793592 AGACCAAAAAGACCTTATTGTAACATC 58.206 33.333 0.00 0.00 0.00 3.06
5237 5561 8.706322 AGACCAAAAAGACCTTATTGTAACAT 57.294 30.769 0.00 0.00 0.00 2.71
5238 5562 9.802039 ATAGACCAAAAAGACCTTATTGTAACA 57.198 29.630 0.00 0.00 0.00 2.41
5242 5566 8.934023 TGAATAGACCAAAAAGACCTTATTGT 57.066 30.769 0.00 0.00 0.00 2.71
5249 5573 8.979574 CGTAGATATGAATAGACCAAAAAGACC 58.020 37.037 0.00 0.00 0.00 3.85
5250 5574 8.979574 CCGTAGATATGAATAGACCAAAAAGAC 58.020 37.037 0.00 0.00 0.00 3.01
5251 5575 8.701895 ACCGTAGATATGAATAGACCAAAAAGA 58.298 33.333 0.00 0.00 0.00 2.52
5252 5576 8.888579 ACCGTAGATATGAATAGACCAAAAAG 57.111 34.615 0.00 0.00 0.00 2.27
5253 5577 9.104965 CAACCGTAGATATGAATAGACCAAAAA 57.895 33.333 0.00 0.00 0.00 1.94
5254 5578 8.262227 ACAACCGTAGATATGAATAGACCAAAA 58.738 33.333 0.00 0.00 0.00 2.44
5255 5579 7.788026 ACAACCGTAGATATGAATAGACCAAA 58.212 34.615 0.00 0.00 0.00 3.28
5256 5580 7.068962 TGACAACCGTAGATATGAATAGACCAA 59.931 37.037 0.00 0.00 0.00 3.67
5257 5581 6.548251 TGACAACCGTAGATATGAATAGACCA 59.452 38.462 0.00 0.00 0.00 4.02
5258 5582 6.978338 TGACAACCGTAGATATGAATAGACC 58.022 40.000 0.00 0.00 0.00 3.85
5259 5583 8.916654 CATTGACAACCGTAGATATGAATAGAC 58.083 37.037 0.00 0.00 0.00 2.59
5260 5584 8.088365 CCATTGACAACCGTAGATATGAATAGA 58.912 37.037 0.00 0.00 0.00 1.98
5261 5585 8.088365 TCCATTGACAACCGTAGATATGAATAG 58.912 37.037 0.00 0.00 0.00 1.73
5262 5586 7.958088 TCCATTGACAACCGTAGATATGAATA 58.042 34.615 0.00 0.00 0.00 1.75
5263 5587 6.826668 TCCATTGACAACCGTAGATATGAAT 58.173 36.000 0.00 0.00 0.00 2.57
5264 5588 6.228616 TCCATTGACAACCGTAGATATGAA 57.771 37.500 0.00 0.00 0.00 2.57
5265 5589 5.221441 CCTCCATTGACAACCGTAGATATGA 60.221 44.000 0.00 0.00 0.00 2.15
5266 5590 4.991056 CCTCCATTGACAACCGTAGATATG 59.009 45.833 0.00 0.00 0.00 1.78
5267 5591 4.040461 CCCTCCATTGACAACCGTAGATAT 59.960 45.833 0.00 0.00 0.00 1.63
5268 5592 3.386726 CCCTCCATTGACAACCGTAGATA 59.613 47.826 0.00 0.00 0.00 1.98
5269 5593 2.170607 CCCTCCATTGACAACCGTAGAT 59.829 50.000 0.00 0.00 0.00 1.98
5270 5594 1.553248 CCCTCCATTGACAACCGTAGA 59.447 52.381 0.00 0.00 0.00 2.59
5271 5595 2.012051 GCCCTCCATTGACAACCGTAG 61.012 57.143 0.00 0.00 0.00 3.51
5272 5596 0.035820 GCCCTCCATTGACAACCGTA 60.036 55.000 0.00 0.00 0.00 4.02
5273 5597 1.303317 GCCCTCCATTGACAACCGT 60.303 57.895 0.00 0.00 0.00 4.83
5274 5598 2.046285 GGCCCTCCATTGACAACCG 61.046 63.158 0.00 0.00 0.00 4.44
5275 5599 0.623723 TAGGCCCTCCATTGACAACC 59.376 55.000 0.00 0.00 33.74 3.77
5276 5600 2.301346 CATAGGCCCTCCATTGACAAC 58.699 52.381 0.00 0.00 33.74 3.32
5277 5601 1.922447 ACATAGGCCCTCCATTGACAA 59.078 47.619 0.00 0.00 33.74 3.18
5278 5602 1.595311 ACATAGGCCCTCCATTGACA 58.405 50.000 0.00 0.00 33.74 3.58
5279 5603 2.689983 CAAACATAGGCCCTCCATTGAC 59.310 50.000 0.00 0.00 33.74 3.18
5280 5604 2.580322 TCAAACATAGGCCCTCCATTGA 59.420 45.455 0.00 2.65 33.74 2.57
5281 5605 3.017048 TCAAACATAGGCCCTCCATTG 57.983 47.619 0.00 0.00 33.74 2.82
5282 5606 3.628257 CCTTCAAACATAGGCCCTCCATT 60.628 47.826 0.00 0.00 33.74 3.16
5283 5607 2.091665 CCTTCAAACATAGGCCCTCCAT 60.092 50.000 0.00 0.00 33.74 3.41
5284 5608 1.284785 CCTTCAAACATAGGCCCTCCA 59.715 52.381 0.00 0.00 33.74 3.86
5285 5609 1.410224 CCCTTCAAACATAGGCCCTCC 60.410 57.143 0.00 0.00 0.00 4.30
5286 5610 2.024306 GCCCTTCAAACATAGGCCCTC 61.024 57.143 0.00 0.00 37.66 4.30
5287 5611 0.033109 GCCCTTCAAACATAGGCCCT 60.033 55.000 0.00 0.00 37.66 5.19
5288 5612 0.033109 AGCCCTTCAAACATAGGCCC 60.033 55.000 0.00 0.00 45.00 5.80
5289 5613 1.106285 CAGCCCTTCAAACATAGGCC 58.894 55.000 0.00 0.00 45.00 5.19
5290 5614 0.457443 GCAGCCCTTCAAACATAGGC 59.543 55.000 0.00 0.00 44.20 3.93
5291 5615 1.106285 GGCAGCCCTTCAAACATAGG 58.894 55.000 0.00 0.00 0.00 2.57
5292 5616 1.106285 GGGCAGCCCTTCAAACATAG 58.894 55.000 24.99 0.00 41.34 2.23
5293 5617 0.324275 GGGGCAGCCCTTCAAACATA 60.324 55.000 30.52 0.00 44.66 2.29
5294 5618 1.610379 GGGGCAGCCCTTCAAACAT 60.610 57.895 30.52 0.00 44.66 2.71
5295 5619 2.203625 GGGGCAGCCCTTCAAACA 60.204 61.111 30.52 0.00 44.66 2.83
5296 5620 2.118294 AGGGGCAGCCCTTCAAAC 59.882 61.111 30.52 12.36 44.66 2.93
5305 5629 2.403132 AATATGCGAGGAGGGGCAGC 62.403 60.000 0.00 0.00 43.27 5.25
5306 5630 0.109342 AAATATGCGAGGAGGGGCAG 59.891 55.000 0.00 0.00 43.27 4.85
5307 5631 0.179020 CAAATATGCGAGGAGGGGCA 60.179 55.000 0.00 0.00 44.29 5.36
5308 5632 0.179018 ACAAATATGCGAGGAGGGGC 60.179 55.000 0.00 0.00 0.00 5.80
5309 5633 2.289694 CCTACAAATATGCGAGGAGGGG 60.290 54.545 0.00 0.00 35.79 4.79
5310 5634 2.368875 ACCTACAAATATGCGAGGAGGG 59.631 50.000 0.00 0.00 36.76 4.30
5311 5635 3.393800 CACCTACAAATATGCGAGGAGG 58.606 50.000 4.82 0.00 36.76 4.30
5312 5636 2.802816 GCACCTACAAATATGCGAGGAG 59.197 50.000 4.82 0.00 36.76 3.69
5313 5637 2.169561 TGCACCTACAAATATGCGAGGA 59.830 45.455 4.82 0.00 41.07 3.71
5314 5638 2.560504 TGCACCTACAAATATGCGAGG 58.439 47.619 0.00 0.00 41.07 4.63
5315 5639 3.002656 CCTTGCACCTACAAATATGCGAG 59.997 47.826 5.50 5.50 45.46 5.03
5316 5640 2.942376 CCTTGCACCTACAAATATGCGA 59.058 45.455 0.00 0.00 41.07 5.10
5317 5641 2.033299 CCCTTGCACCTACAAATATGCG 59.967 50.000 0.00 0.00 41.07 4.73
5318 5642 3.066760 GTCCCTTGCACCTACAAATATGC 59.933 47.826 0.00 0.00 38.59 3.14
5319 5643 4.269183 TGTCCCTTGCACCTACAAATATG 58.731 43.478 0.00 0.00 0.00 1.78
5320 5644 4.584638 TGTCCCTTGCACCTACAAATAT 57.415 40.909 0.00 0.00 0.00 1.28
5321 5645 4.269183 CATGTCCCTTGCACCTACAAATA 58.731 43.478 0.00 0.00 0.00 1.40
5322 5646 2.969821 TGTCCCTTGCACCTACAAAT 57.030 45.000 0.00 0.00 0.00 2.32
5323 5647 2.513753 CATGTCCCTTGCACCTACAAA 58.486 47.619 0.00 0.00 0.00 2.83
5324 5648 1.271871 CCATGTCCCTTGCACCTACAA 60.272 52.381 0.00 0.00 0.00 2.41
5325 5649 0.327924 CCATGTCCCTTGCACCTACA 59.672 55.000 0.00 0.00 0.00 2.74
5326 5650 1.032114 GCCATGTCCCTTGCACCTAC 61.032 60.000 0.00 0.00 0.00 3.18
5327 5651 1.207488 AGCCATGTCCCTTGCACCTA 61.207 55.000 0.00 0.00 0.00 3.08
5328 5652 1.207488 TAGCCATGTCCCTTGCACCT 61.207 55.000 0.00 0.00 0.00 4.00
5329 5653 0.749454 CTAGCCATGTCCCTTGCACC 60.749 60.000 0.00 0.00 0.00 5.01
5330 5654 1.379642 GCTAGCCATGTCCCTTGCAC 61.380 60.000 2.29 0.00 31.61 4.57
5331 5655 1.077501 GCTAGCCATGTCCCTTGCA 60.078 57.895 2.29 0.00 31.61 4.08
5332 5656 0.394899 AAGCTAGCCATGTCCCTTGC 60.395 55.000 12.13 0.00 0.00 4.01
5333 5657 1.747355 CAAAGCTAGCCATGTCCCTTG 59.253 52.381 12.13 0.00 0.00 3.61
5334 5658 1.635487 TCAAAGCTAGCCATGTCCCTT 59.365 47.619 12.13 0.00 0.00 3.95
5335 5659 1.289160 TCAAAGCTAGCCATGTCCCT 58.711 50.000 12.13 0.00 0.00 4.20
5336 5660 1.952296 CATCAAAGCTAGCCATGTCCC 59.048 52.381 12.13 0.00 0.00 4.46
5337 5661 2.877168 CTCATCAAAGCTAGCCATGTCC 59.123 50.000 12.13 0.00 0.00 4.02
5338 5662 3.559242 GTCTCATCAAAGCTAGCCATGTC 59.441 47.826 12.13 1.99 0.00 3.06
5339 5663 3.539604 GTCTCATCAAAGCTAGCCATGT 58.460 45.455 12.13 0.00 0.00 3.21
5340 5664 2.543012 CGTCTCATCAAAGCTAGCCATG 59.457 50.000 12.13 11.08 0.00 3.66
5341 5665 2.432146 TCGTCTCATCAAAGCTAGCCAT 59.568 45.455 12.13 0.00 0.00 4.40
5342 5666 1.824852 TCGTCTCATCAAAGCTAGCCA 59.175 47.619 12.13 0.00 0.00 4.75
5343 5667 2.586258 TCGTCTCATCAAAGCTAGCC 57.414 50.000 12.13 0.00 0.00 3.93
5344 5668 3.056304 GGATCGTCTCATCAAAGCTAGC 58.944 50.000 6.62 6.62 0.00 3.42
5345 5669 4.545610 GAGGATCGTCTCATCAAAGCTAG 58.454 47.826 8.17 0.00 34.77 3.42
5346 5670 3.319405 GGAGGATCGTCTCATCAAAGCTA 59.681 47.826 14.65 0.00 36.38 3.32
5347 5671 2.102252 GGAGGATCGTCTCATCAAAGCT 59.898 50.000 14.65 0.00 36.38 3.74
5348 5672 2.102252 AGGAGGATCGTCTCATCAAAGC 59.898 50.000 14.65 0.00 36.38 3.51
5349 5673 4.582656 AGTAGGAGGATCGTCTCATCAAAG 59.417 45.833 14.65 0.00 36.38 2.77
5350 5674 4.537751 AGTAGGAGGATCGTCTCATCAAA 58.462 43.478 14.65 0.00 36.38 2.69
5351 5675 4.171878 AGTAGGAGGATCGTCTCATCAA 57.828 45.455 14.65 0.00 36.38 2.57
5352 5676 3.866703 AGTAGGAGGATCGTCTCATCA 57.133 47.619 14.65 0.00 36.38 3.07
5353 5677 3.254657 CCAAGTAGGAGGATCGTCTCATC 59.745 52.174 14.65 0.00 41.22 2.92
5354 5678 3.226777 CCAAGTAGGAGGATCGTCTCAT 58.773 50.000 14.65 3.63 41.22 2.90
5355 5679 2.656002 CCAAGTAGGAGGATCGTCTCA 58.344 52.381 14.65 0.98 41.22 3.27
5356 5680 1.957877 CCCAAGTAGGAGGATCGTCTC 59.042 57.143 14.65 3.09 41.22 3.36
5357 5681 2.030045 GCCCAAGTAGGAGGATCGTCT 61.030 57.143 14.65 4.39 41.22 4.18
5358 5682 0.389757 GCCCAAGTAGGAGGATCGTC 59.610 60.000 6.88 6.88 41.22 4.20
5359 5683 1.049289 GGCCCAAGTAGGAGGATCGT 61.049 60.000 0.00 0.00 41.22 3.73
5360 5684 1.749033 GGCCCAAGTAGGAGGATCG 59.251 63.158 0.00 0.00 41.22 3.69
5361 5685 1.749033 CGGCCCAAGTAGGAGGATC 59.251 63.158 0.00 0.00 41.22 3.36
5362 5686 2.444256 GCGGCCCAAGTAGGAGGAT 61.444 63.158 0.00 0.00 41.22 3.24
5363 5687 3.081409 GCGGCCCAAGTAGGAGGA 61.081 66.667 0.00 0.00 41.22 3.71
5364 5688 4.176752 GGCGGCCCAAGTAGGAGG 62.177 72.222 8.12 0.00 41.22 4.30
5365 5689 3.083997 AGGCGGCCCAAGTAGGAG 61.084 66.667 17.02 0.00 41.22 3.69
5366 5690 3.399181 CAGGCGGCCCAAGTAGGA 61.399 66.667 17.02 0.00 41.22 2.94
5368 5692 4.408821 TGCAGGCGGCCCAAGTAG 62.409 66.667 17.02 0.02 43.89 2.57
5369 5693 4.715523 GTGCAGGCGGCCCAAGTA 62.716 66.667 17.02 2.64 43.89 2.24
5392 5716 2.366153 TTTTCTGGAGGGGGTGCACC 62.366 60.000 28.57 28.57 39.11 5.01
5393 5717 1.152830 TTTTCTGGAGGGGGTGCAC 59.847 57.895 8.80 8.80 0.00 4.57
5394 5718 1.152830 GTTTTCTGGAGGGGGTGCA 59.847 57.895 0.00 0.00 0.00 4.57
5395 5719 1.606601 GGTTTTCTGGAGGGGGTGC 60.607 63.158 0.00 0.00 0.00 5.01
5396 5720 1.076727 GGGTTTTCTGGAGGGGGTG 59.923 63.158 0.00 0.00 0.00 4.61
5397 5721 2.535331 CGGGTTTTCTGGAGGGGGT 61.535 63.158 0.00 0.00 0.00 4.95
5398 5722 2.198304 CTCGGGTTTTCTGGAGGGGG 62.198 65.000 0.00 0.00 0.00 5.40
5399 5723 1.299976 CTCGGGTTTTCTGGAGGGG 59.700 63.158 0.00 0.00 0.00 4.79
5400 5724 1.377333 GCTCGGGTTTTCTGGAGGG 60.377 63.158 0.00 0.00 0.00 4.30
5401 5725 1.377333 GGCTCGGGTTTTCTGGAGG 60.377 63.158 0.00 0.00 0.00 4.30
5402 5726 0.391793 GAGGCTCGGGTTTTCTGGAG 60.392 60.000 0.00 0.00 0.00 3.86
5403 5727 1.677552 GAGGCTCGGGTTTTCTGGA 59.322 57.895 0.00 0.00 0.00 3.86
5404 5728 1.377333 GGAGGCTCGGGTTTTCTGG 60.377 63.158 8.69 0.00 0.00 3.86
5405 5729 1.377333 GGGAGGCTCGGGTTTTCTG 60.377 63.158 8.69 0.00 0.00 3.02
5406 5730 2.603652 GGGGAGGCTCGGGTTTTCT 61.604 63.158 8.69 0.00 0.00 2.52
5407 5731 2.045242 GGGGAGGCTCGGGTTTTC 60.045 66.667 8.69 0.00 0.00 2.29
5408 5732 3.658422 GGGGGAGGCTCGGGTTTT 61.658 66.667 8.69 0.00 0.00 2.43
5409 5733 4.677151 AGGGGGAGGCTCGGGTTT 62.677 66.667 8.69 0.00 0.00 3.27
5410 5734 4.677151 AAGGGGGAGGCTCGGGTT 62.677 66.667 8.69 0.00 0.00 4.11
5415 5739 3.403558 AAGCGAAGGGGGAGGCTC 61.404 66.667 5.78 5.78 33.99 4.70
5416 5740 3.721706 CAAGCGAAGGGGGAGGCT 61.722 66.667 0.00 0.00 37.33 4.58
5418 5742 4.803908 GGCAAGCGAAGGGGGAGG 62.804 72.222 0.00 0.00 0.00 4.30
5419 5743 4.803908 GGGCAAGCGAAGGGGGAG 62.804 72.222 0.00 0.00 0.00 4.30
5422 5746 2.493273 TTTAGGGGCAAGCGAAGGGG 62.493 60.000 0.00 0.00 0.00 4.79
5423 5747 1.001393 TTTAGGGGCAAGCGAAGGG 60.001 57.895 0.00 0.00 0.00 3.95
5424 5748 1.032114 CCTTTAGGGGCAAGCGAAGG 61.032 60.000 0.00 0.00 0.00 3.46
5425 5749 2.482326 CCTTTAGGGGCAAGCGAAG 58.518 57.895 0.00 0.00 0.00 3.79
5426 5750 4.734652 CCTTTAGGGGCAAGCGAA 57.265 55.556 0.00 0.00 0.00 4.70
5436 5760 0.256177 GCTCCCCACTTCCCTTTAGG 59.744 60.000 0.00 0.00 0.00 2.69
5437 5761 0.107654 CGCTCCCCACTTCCCTTTAG 60.108 60.000 0.00 0.00 0.00 1.85
5438 5762 1.988015 CGCTCCCCACTTCCCTTTA 59.012 57.895 0.00 0.00 0.00 1.85
5439 5763 2.757077 CGCTCCCCACTTCCCTTT 59.243 61.111 0.00 0.00 0.00 3.11
5440 5764 4.035102 GCGCTCCCCACTTCCCTT 62.035 66.667 0.00 0.00 0.00 3.95
5451 5775 3.373565 CCAAAAGTGGGGCGCTCC 61.374 66.667 22.87 22.87 41.77 4.70
5452 5776 4.056125 GCCAAAAGTGGGGCGCTC 62.056 66.667 7.64 1.18 46.09 5.03
5457 5781 1.459348 AAGGTGGCCAAAAGTGGGG 60.459 57.895 7.24 0.00 46.09 4.96
5458 5782 1.747774 CAAGGTGGCCAAAAGTGGG 59.252 57.895 7.24 0.00 46.09 4.61
5471 5795 1.259840 GCATCCACATTGGCCAAGGT 61.260 55.000 29.25 29.25 37.47 3.50
5472 5796 1.518774 GCATCCACATTGGCCAAGG 59.481 57.895 27.76 27.76 37.47 3.61
5473 5797 1.518774 GGCATCCACATTGGCCAAG 59.481 57.895 24.94 17.48 45.70 3.61
5474 5798 3.710926 GGCATCCACATTGGCCAA 58.289 55.556 23.00 23.00 45.70 4.52
5477 5801 3.156556 GGGGGCATCCACATTGGC 61.157 66.667 0.00 0.00 37.47 4.52
5478 5802 2.363760 TGGGGGCATCCACATTGG 59.636 61.111 0.00 0.00 42.59 3.16
5490 5814 1.279025 TTAGCTAGGCCAAGTGGGGG 61.279 60.000 5.01 0.00 37.04 5.40
5491 5815 0.846693 ATTAGCTAGGCCAAGTGGGG 59.153 55.000 5.01 0.00 37.04 4.96
5492 5816 1.477558 CCATTAGCTAGGCCAAGTGGG 60.478 57.143 5.01 0.00 40.85 4.61
5493 5817 1.477558 CCCATTAGCTAGGCCAAGTGG 60.478 57.143 5.01 2.86 38.53 4.00
5494 5818 1.477558 CCCCATTAGCTAGGCCAAGTG 60.478 57.143 5.01 0.00 0.00 3.16
5495 5819 0.846693 CCCCATTAGCTAGGCCAAGT 59.153 55.000 5.01 0.00 0.00 3.16
5496 5820 1.140312 TCCCCATTAGCTAGGCCAAG 58.860 55.000 5.01 0.00 0.00 3.61
5497 5821 1.425066 CATCCCCATTAGCTAGGCCAA 59.575 52.381 5.01 0.00 0.00 4.52
5498 5822 1.067295 CATCCCCATTAGCTAGGCCA 58.933 55.000 5.01 0.00 0.00 5.36
5499 5823 0.322906 GCATCCCCATTAGCTAGGCC 60.323 60.000 0.00 0.00 0.00 5.19
5500 5824 0.322906 GGCATCCCCATTAGCTAGGC 60.323 60.000 0.00 0.00 0.00 3.93
5501 5825 1.366319 AGGCATCCCCATTAGCTAGG 58.634 55.000 0.00 0.00 35.39 3.02
5502 5826 2.373169 TGAAGGCATCCCCATTAGCTAG 59.627 50.000 0.00 0.00 35.39 3.42
5503 5827 2.106511 GTGAAGGCATCCCCATTAGCTA 59.893 50.000 0.00 0.00 35.39 3.32
5504 5828 1.133668 GTGAAGGCATCCCCATTAGCT 60.134 52.381 0.00 0.00 35.39 3.32
5505 5829 1.133668 AGTGAAGGCATCCCCATTAGC 60.134 52.381 0.00 0.00 35.39 3.09
5506 5830 2.954318 CAAGTGAAGGCATCCCCATTAG 59.046 50.000 0.00 0.00 35.39 1.73
5507 5831 2.358090 CCAAGTGAAGGCATCCCCATTA 60.358 50.000 0.00 0.00 35.39 1.90
5508 5832 1.620524 CCAAGTGAAGGCATCCCCATT 60.621 52.381 0.00 0.00 35.39 3.16
5509 5833 0.032813 CCAAGTGAAGGCATCCCCAT 60.033 55.000 0.00 0.00 35.39 4.00
5510 5834 1.383799 CCAAGTGAAGGCATCCCCA 59.616 57.895 0.00 0.00 35.39 4.96
5511 5835 1.380380 CCCAAGTGAAGGCATCCCC 60.380 63.158 0.00 0.00 0.00 4.81
5512 5836 4.344237 CCCAAGTGAAGGCATCCC 57.656 61.111 0.00 0.00 0.00 3.85
5518 5842 1.077429 GGCTAGGCCCAAGTGAAGG 60.077 63.158 4.61 0.00 44.06 3.46
5519 5843 4.645809 GGCTAGGCCCAAGTGAAG 57.354 61.111 4.61 0.00 44.06 3.02
5529 5853 1.228094 GAGGCTCCATTGGCTAGGC 60.228 63.158 9.85 9.85 43.09 3.93
5530 5854 0.396060 GAGAGGCTCCATTGGCTAGG 59.604 60.000 11.71 0.00 43.09 3.02
5531 5855 1.070445 CTGAGAGGCTCCATTGGCTAG 59.930 57.143 11.71 0.00 43.09 3.42
5532 5856 1.126488 CTGAGAGGCTCCATTGGCTA 58.874 55.000 11.71 0.00 43.09 3.93
5533 5857 0.619832 TCTGAGAGGCTCCATTGGCT 60.620 55.000 11.71 0.00 45.80 4.75
5534 5858 0.254178 TTCTGAGAGGCTCCATTGGC 59.746 55.000 11.71 0.00 0.00 4.52
5535 5859 1.558756 AGTTCTGAGAGGCTCCATTGG 59.441 52.381 11.71 0.00 0.00 3.16
5536 5860 3.347077 AAGTTCTGAGAGGCTCCATTG 57.653 47.619 11.71 0.00 0.00 2.82
5537 5861 4.379302 AAAAGTTCTGAGAGGCTCCATT 57.621 40.909 11.71 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.