Multiple sequence alignment - TraesCS7B01G241300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G241300 chr7B 100.000 3384 0 0 1 3384 448734196 448737579 0.000000e+00 6250.0
1 TraesCS7B01G241300 chr7D 93.864 1760 68 17 1648 3384 431337213 431338955 0.000000e+00 2615.0
2 TraesCS7B01G241300 chr7D 89.524 945 63 21 3 934 431334709 431335630 0.000000e+00 1164.0
3 TraesCS7B01G241300 chr7D 90.653 567 24 12 1039 1604 431336673 431337211 0.000000e+00 726.0
4 TraesCS7B01G241300 chr7D 90.566 53 3 1 3332 3384 44748161 44748111 6.060000e-08 69.4
5 TraesCS7B01G241300 chr7A 89.103 1248 92 20 2175 3384 501587995 501586754 0.000000e+00 1511.0
6 TraesCS7B01G241300 chr7A 88.928 1138 75 22 1038 2158 501589217 501588114 0.000000e+00 1356.0
7 TraesCS7B01G241300 chr7A 87.687 804 60 13 62 841 501592478 501591690 0.000000e+00 900.0
8 TraesCS7B01G241300 chr3A 92.453 53 2 1 3332 3384 247661972 247661922 1.300000e-09 75.0
9 TraesCS7B01G241300 chrUn 90.566 53 3 1 3332 3384 45084954 45085004 6.060000e-08 69.4
10 TraesCS7B01G241300 chrUn 90.566 53 3 1 3332 3384 182460897 182460847 6.060000e-08 69.4
11 TraesCS7B01G241300 chr6D 90.566 53 3 1 3332 3384 108505795 108505745 6.060000e-08 69.4
12 TraesCS7B01G241300 chr5D 90.566 53 3 1 3332 3384 562904651 562904601 6.060000e-08 69.4
13 TraesCS7B01G241300 chr4B 90.566 53 3 1 3332 3384 209181635 209181585 6.060000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G241300 chr7B 448734196 448737579 3383 False 6250.000000 6250 100.000000 1 3384 1 chr7B.!!$F1 3383
1 TraesCS7B01G241300 chr7D 431334709 431338955 4246 False 1501.666667 2615 91.347000 3 3384 3 chr7D.!!$F1 3381
2 TraesCS7B01G241300 chr7A 501586754 501592478 5724 True 1255.666667 1511 88.572667 62 3384 3 chr7A.!!$R1 3322

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
741 776 0.036294 GGAACGTTGAGGGAGAAGGG 60.036 60.0 5.0 0.0 0.0 3.95 F
1360 4111 0.035458 CGGCTAATCACCCCTCATCC 59.965 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 4573 0.687354 AGGGTGCTCATGACGACTTT 59.313 50.0 0.0 0.0 0.00 2.66 R
3028 5971 0.455410 TTTGTTCATGCCATAGCCGC 59.545 50.0 0.0 0.0 38.69 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.640732 CCTCTGCAAAAATTACTAATGCGT 58.359 37.500 0.00 0.00 39.81 5.24
38 39 1.468127 CTAATGCGTGTGTTGGATGCA 59.532 47.619 0.00 0.00 39.60 3.96
47 48 0.883153 TGTTGGATGCACACTCATGC 59.117 50.000 0.00 0.00 46.32 4.06
141 144 7.158021 TGTAAATTTTTATTGCCTGGAACCAG 58.842 34.615 13.32 13.32 43.26 4.00
201 204 1.196808 CGTTCCGTATTTGCTTGCAGT 59.803 47.619 0.00 0.00 0.00 4.40
265 268 2.980233 GCAAGAACGGCTGGCTGT 60.980 61.111 0.69 0.69 40.63 4.40
276 279 1.903877 GCTGGCTGTTAGCAGGAGGA 61.904 60.000 8.78 0.00 44.75 3.71
307 310 2.226330 ACAATGTTTGTCAAGCCGCTA 58.774 42.857 0.00 0.00 40.56 4.26
342 345 1.755179 ATGGTGTGGATGTTAGCAGC 58.245 50.000 0.00 0.00 0.00 5.25
634 665 8.752005 AGATGGTGTAAATGTAACTATGCAAT 57.248 30.769 0.00 0.00 0.00 3.56
654 685 1.801913 CTTCTCCTGTTCGTCGCCG 60.802 63.158 0.00 0.00 0.00 6.46
668 703 3.637714 GCCGTGCGTTCTTCTTGA 58.362 55.556 0.00 0.00 0.00 3.02
669 704 1.204312 GCCGTGCGTTCTTCTTGAC 59.796 57.895 0.00 0.00 0.00 3.18
670 705 1.222115 GCCGTGCGTTCTTCTTGACT 61.222 55.000 0.00 0.00 0.00 3.41
671 706 0.508641 CCGTGCGTTCTTCTTGACTG 59.491 55.000 0.00 0.00 0.00 3.51
686 721 0.110056 GACTGCAGCAACATTGTCGG 60.110 55.000 15.27 0.00 0.00 4.79
693 728 0.099436 GCAACATTGTCGGCTGATCC 59.901 55.000 0.00 0.00 0.00 3.36
715 750 4.729918 CACCACCTGAGGGGCTGC 62.730 72.222 2.38 0.00 39.10 5.25
740 775 3.534721 GGAACGTTGAGGGAGAAGG 57.465 57.895 5.00 0.00 0.00 3.46
741 776 0.036294 GGAACGTTGAGGGAGAAGGG 60.036 60.000 5.00 0.00 0.00 3.95
742 777 0.036294 GAACGTTGAGGGAGAAGGGG 60.036 60.000 5.00 0.00 0.00 4.79
743 778 0.767060 AACGTTGAGGGAGAAGGGGT 60.767 55.000 0.00 0.00 0.00 4.95
744 779 0.115745 ACGTTGAGGGAGAAGGGGTA 59.884 55.000 0.00 0.00 0.00 3.69
745 780 1.272807 CGTTGAGGGAGAAGGGGTAA 58.727 55.000 0.00 0.00 0.00 2.85
746 781 1.066358 CGTTGAGGGAGAAGGGGTAAC 60.066 57.143 0.00 0.00 0.00 2.50
758 793 1.489230 AGGGGTAACGATGGGTTCATC 59.511 52.381 0.00 0.00 44.70 2.92
797 842 1.687493 GTAGAGGCAGAGTGGGGCT 60.687 63.158 0.00 0.00 44.69 5.19
812 857 2.730094 GCTGTTGTGGCCTTGTGG 59.270 61.111 3.32 0.00 0.00 4.17
844 899 0.107703 GGCACGATGATCACCCTCAA 60.108 55.000 0.00 0.00 0.00 3.02
849 904 3.558829 CACGATGATCACCCTCAAATCTG 59.441 47.826 0.00 0.00 0.00 2.90
857 912 4.728772 TCACCCTCAAATCTGTCATTGTT 58.271 39.130 0.00 0.00 0.00 2.83
858 913 5.875224 TCACCCTCAAATCTGTCATTGTTA 58.125 37.500 0.00 0.00 0.00 2.41
859 914 6.303054 TCACCCTCAAATCTGTCATTGTTAA 58.697 36.000 0.00 0.00 0.00 2.01
860 915 6.430925 TCACCCTCAAATCTGTCATTGTTAAG 59.569 38.462 0.00 0.00 0.00 1.85
861 916 6.430925 CACCCTCAAATCTGTCATTGTTAAGA 59.569 38.462 0.00 0.00 0.00 2.10
862 917 6.431234 ACCCTCAAATCTGTCATTGTTAAGAC 59.569 38.462 0.00 0.00 35.37 3.01
863 918 6.127897 CCCTCAAATCTGTCATTGTTAAGACC 60.128 42.308 0.00 0.00 33.89 3.85
864 919 6.656693 CCTCAAATCTGTCATTGTTAAGACCT 59.343 38.462 0.00 0.00 33.89 3.85
865 920 7.175641 CCTCAAATCTGTCATTGTTAAGACCTT 59.824 37.037 0.00 0.00 33.89 3.50
866 921 9.219603 CTCAAATCTGTCATTGTTAAGACCTTA 57.780 33.333 0.00 0.00 33.89 2.69
867 922 8.999431 TCAAATCTGTCATTGTTAAGACCTTAC 58.001 33.333 0.00 0.00 33.89 2.34
884 939 7.275920 AGACCTTACTAAGATTGGCATGTTAG 58.724 38.462 10.25 10.25 40.56 2.34
898 2651 4.202050 GGCATGTTAGAGTTTGGGCATTAG 60.202 45.833 0.00 0.00 0.00 1.73
920 2674 5.682869 AGGTTTAACGCAAAAACGATCTAC 58.317 37.500 0.00 0.00 37.64 2.59
934 2688 4.395625 ACGATCTACCGTGGATGATTAGA 58.604 43.478 1.52 0.00 41.70 2.10
935 2689 4.456222 ACGATCTACCGTGGATGATTAGAG 59.544 45.833 1.52 0.00 41.70 2.43
937 2691 3.562182 TCTACCGTGGATGATTAGAGCA 58.438 45.455 0.00 0.00 0.00 4.26
938 2692 2.604046 ACCGTGGATGATTAGAGCAC 57.396 50.000 0.00 0.00 0.00 4.40
939 2693 1.139058 ACCGTGGATGATTAGAGCACC 59.861 52.381 0.00 0.00 0.00 5.01
940 2694 1.414181 CCGTGGATGATTAGAGCACCT 59.586 52.381 0.00 0.00 0.00 4.00
941 2695 2.546795 CCGTGGATGATTAGAGCACCTC 60.547 54.545 0.00 0.00 0.00 3.85
943 2697 3.244009 CGTGGATGATTAGAGCACCTCAT 60.244 47.826 0.00 0.00 32.06 2.90
944 2698 4.314121 GTGGATGATTAGAGCACCTCATC 58.686 47.826 9.16 9.16 42.01 2.92
945 2699 3.969312 TGGATGATTAGAGCACCTCATCA 59.031 43.478 15.62 11.16 43.66 3.07
946 2700 4.596212 TGGATGATTAGAGCACCTCATCAT 59.404 41.667 12.65 12.65 43.66 2.45
947 2701 5.072736 TGGATGATTAGAGCACCTCATCATT 59.927 40.000 13.50 3.08 43.66 2.57
948 2702 6.270695 TGGATGATTAGAGCACCTCATCATTA 59.729 38.462 13.50 6.95 43.66 1.90
949 2703 6.817641 GGATGATTAGAGCACCTCATCATTAG 59.182 42.308 13.50 0.00 43.66 1.73
950 2704 6.983906 TGATTAGAGCACCTCATCATTAGA 57.016 37.500 0.00 0.00 32.06 2.10
951 2705 7.550597 TGATTAGAGCACCTCATCATTAGAT 57.449 36.000 0.00 0.00 32.06 1.98
954 2708 8.891985 ATTAGAGCACCTCATCATTAGATAGA 57.108 34.615 0.00 0.00 32.06 1.98
955 2709 8.712228 TTAGAGCACCTCATCATTAGATAGAA 57.288 34.615 0.00 0.00 32.06 2.10
957 2711 5.792741 AGCACCTCATCATTAGATAGAAGC 58.207 41.667 0.00 0.00 31.88 3.86
958 2712 4.624882 GCACCTCATCATTAGATAGAAGCG 59.375 45.833 0.00 0.00 31.88 4.68
959 2713 5.777802 CACCTCATCATTAGATAGAAGCGT 58.222 41.667 0.00 0.00 31.88 5.07
963 2717 5.465051 TCATCATTAGATAGAAGCGTGAGC 58.535 41.667 0.00 0.00 45.57 4.26
964 2718 5.010012 TCATCATTAGATAGAAGCGTGAGCA 59.990 40.000 0.00 0.00 46.86 4.26
965 2719 5.693555 CATCATTAGATAGAAGCGTGAGCAA 59.306 40.000 0.00 0.00 46.86 3.91
966 2720 6.201615 CATCATTAGATAGAAGCGTGAGCAAA 59.798 38.462 0.00 0.00 46.86 3.68
967 2721 7.254556 CATCATTAGATAGAAGCGTGAGCAAAA 60.255 37.037 0.00 0.00 46.86 2.44
976 2730 2.320805 CGTGAGCAAAACCTGTGATG 57.679 50.000 0.00 0.00 0.00 3.07
977 2731 1.664016 CGTGAGCAAAACCTGTGATGC 60.664 52.381 0.00 0.00 39.06 3.91
978 2732 0.961019 TGAGCAAAACCTGTGATGCC 59.039 50.000 4.50 0.00 39.59 4.40
979 2733 0.961019 GAGCAAAACCTGTGATGCCA 59.039 50.000 4.50 0.00 39.59 4.92
980 2734 1.547372 GAGCAAAACCTGTGATGCCAT 59.453 47.619 4.50 0.00 39.59 4.40
982 2736 1.001181 GCAAAACCTGTGATGCCATGT 59.999 47.619 0.00 0.00 32.73 3.21
983 2737 2.679450 CAAAACCTGTGATGCCATGTG 58.321 47.619 0.00 0.00 0.00 3.21
984 2738 2.291209 AAACCTGTGATGCCATGTGA 57.709 45.000 0.00 0.00 0.00 3.58
986 2740 0.679002 ACCTGTGATGCCATGTGAGC 60.679 55.000 0.00 0.00 0.00 4.26
987 2741 0.678684 CCTGTGATGCCATGTGAGCA 60.679 55.000 0.00 0.00 45.94 4.26
988 2742 0.450583 CTGTGATGCCATGTGAGCAC 59.549 55.000 0.00 0.40 44.40 4.40
989 2743 0.961857 TGTGATGCCATGTGAGCACC 60.962 55.000 7.03 0.00 44.40 5.01
990 2744 1.378911 TGATGCCATGTGAGCACCC 60.379 57.895 0.00 0.00 44.40 4.61
991 2745 2.438975 ATGCCATGTGAGCACCCG 60.439 61.111 0.00 0.00 44.40 5.28
992 2746 2.874648 GATGCCATGTGAGCACCCGA 62.875 60.000 0.00 0.00 44.40 5.14
994 2748 1.146041 GCCATGTGAGCACCCGATA 59.854 57.895 0.00 0.00 0.00 2.92
995 2749 0.463654 GCCATGTGAGCACCCGATAA 60.464 55.000 0.00 0.00 0.00 1.75
996 2750 1.586422 CCATGTGAGCACCCGATAAG 58.414 55.000 0.00 0.00 0.00 1.73
997 2751 1.138859 CCATGTGAGCACCCGATAAGA 59.861 52.381 0.00 0.00 0.00 2.10
999 2753 0.172578 TGTGAGCACCCGATAAGACG 59.827 55.000 0.00 0.00 0.00 4.18
1000 2754 1.141019 TGAGCACCCGATAAGACGC 59.859 57.895 0.00 0.00 0.00 5.19
1001 2755 1.944676 GAGCACCCGATAAGACGCG 60.945 63.158 3.53 3.53 0.00 6.01
1002 2756 2.960129 GCACCCGATAAGACGCGG 60.960 66.667 12.47 0.00 46.80 6.46
1004 2758 3.454573 ACCCGATAAGACGCGGCA 61.455 61.111 17.71 0.00 45.93 5.69
1005 2759 2.658593 CCCGATAAGACGCGGCAG 60.659 66.667 17.71 0.00 45.93 4.85
1007 2761 2.230940 CCGATAAGACGCGGCAGTG 61.231 63.158 17.71 0.00 41.17 3.66
1008 2762 1.516386 CGATAAGACGCGGCAGTGT 60.516 57.895 17.71 1.67 44.89 3.55
1009 2763 1.742900 CGATAAGACGCGGCAGTGTG 61.743 60.000 17.71 0.00 41.83 3.82
1028 2782 1.154836 CGCGCGCGGATTAGATTTC 60.155 57.895 43.28 9.40 35.56 2.17
1029 2783 1.817217 CGCGCGCGGATTAGATTTCA 61.817 55.000 43.28 0.00 35.56 2.69
1030 2784 0.383124 GCGCGCGGATTAGATTTCAC 60.383 55.000 33.06 5.61 0.00 3.18
1032 2786 1.205657 GCGCGGATTAGATTTCACGA 58.794 50.000 8.83 0.00 0.00 4.35
1033 2787 1.792949 GCGCGGATTAGATTTCACGAT 59.207 47.619 8.83 0.00 0.00 3.73
1034 2788 2.221055 GCGCGGATTAGATTTCACGATT 59.779 45.455 8.83 0.00 0.00 3.34
1035 2789 3.787826 CGCGGATTAGATTTCACGATTG 58.212 45.455 0.00 0.00 0.00 2.67
1036 2790 3.545633 GCGGATTAGATTTCACGATTGC 58.454 45.455 0.00 0.00 0.00 3.56
1066 3816 2.399396 AAACAAATTCAGTCGGCGTG 57.601 45.000 6.85 0.00 0.00 5.34
1342 4093 4.430765 AAGCAGTACGACCCGGCG 62.431 66.667 0.00 0.00 37.29 6.46
1354 4105 4.929707 CCGGCGGCTAATCACCCC 62.930 72.222 15.42 0.00 0.00 4.95
1360 4111 0.035458 CGGCTAATCACCCCTCATCC 59.965 60.000 0.00 0.00 0.00 3.51
1427 4178 7.638444 TCTCTCATAGCTATACCTGCTTATCT 58.362 38.462 5.77 0.00 41.46 1.98
1428 4179 8.112822 TCTCTCATAGCTATACCTGCTTATCTT 58.887 37.037 5.77 0.00 41.46 2.40
1429 4180 8.287439 TCTCATAGCTATACCTGCTTATCTTC 57.713 38.462 5.77 0.00 41.46 2.87
1430 4181 7.890655 TCTCATAGCTATACCTGCTTATCTTCA 59.109 37.037 5.77 0.00 41.46 3.02
1431 4182 8.060931 TCATAGCTATACCTGCTTATCTTCAG 57.939 38.462 5.77 0.00 41.46 3.02
1432 4183 7.890655 TCATAGCTATACCTGCTTATCTTCAGA 59.109 37.037 5.77 0.00 41.46 3.27
1433 4184 6.588719 AGCTATACCTGCTTATCTTCAGAG 57.411 41.667 0.00 0.00 37.52 3.35
1466 4217 6.097554 ACAGTAGTTGGTGAGGATTCATCTAG 59.902 42.308 0.00 0.00 35.38 2.43
1467 4218 6.097554 CAGTAGTTGGTGAGGATTCATCTAGT 59.902 42.308 0.00 0.00 35.38 2.57
1537 4288 3.541516 CGAAACCATGATTCGCGAGTAAC 60.542 47.826 9.59 2.95 42.52 2.50
1540 4291 1.593006 CCATGATTCGCGAGTAACCAC 59.407 52.381 9.59 0.00 0.00 4.16
1549 4300 0.247974 CGAGTAACCACTAGCCGTCG 60.248 60.000 0.00 0.00 34.21 5.12
1571 4323 4.917998 CGTATGATCCGGACTAAATGTGAG 59.082 45.833 6.12 0.00 0.00 3.51
1584 4336 0.249238 ATGTGAGATCTTCCGCGAGC 60.249 55.000 8.23 0.00 0.00 5.03
1605 4357 8.388103 GCGAGCAGTTTTCAAATTTATCTAGTA 58.612 33.333 0.00 0.00 0.00 1.82
1628 4380 9.536510 AGTACTCTTAGTGATCTAAAAGGTCTT 57.463 33.333 0.00 0.00 35.98 3.01
1710 4464 2.550639 GGGCCTCATTTTGCACACAATT 60.551 45.455 0.84 0.00 35.21 2.32
1727 4481 7.673776 GCACACAATTTCGATCTTGTTTTGTTT 60.674 33.333 9.65 0.00 33.45 2.83
1815 4569 9.726232 CTTTATGACTTGTGGATTGTGATTATG 57.274 33.333 0.00 0.00 0.00 1.90
1819 4573 3.378861 TGTGGATTGTGATTATGGCCA 57.621 42.857 8.56 8.56 0.00 5.36
1922 4676 4.701956 ACTAAATGGTTCATTTCTGCCG 57.298 40.909 8.87 0.00 42.19 5.69
2085 4839 6.693545 CCTCACTCTTCATACGATGACTAAAC 59.306 42.308 0.00 0.00 39.39 2.01
2105 4996 3.096852 ACACCTGGATCGTTATCTGTCA 58.903 45.455 0.00 0.00 32.29 3.58
2250 5143 7.396540 ACATTATCTGGAAACTGAATGTTCC 57.603 36.000 0.00 0.00 41.93 3.62
2346 5240 5.979288 AGGTATATACTCGTTAGCAAGGG 57.021 43.478 12.54 0.00 0.00 3.95
2355 5249 1.611491 CGTTAGCAAGGGAAAAAGGCA 59.389 47.619 0.00 0.00 0.00 4.75
2357 5251 1.627864 TAGCAAGGGAAAAAGGCACC 58.372 50.000 0.00 0.00 0.00 5.01
2383 5277 2.472073 GCGTTAATTGTGCATTTTGCCG 60.472 45.455 0.00 0.00 44.23 5.69
2443 5337 3.997762 TCTTTTGTCGCCTAGTGCTTAA 58.002 40.909 2.39 0.00 38.05 1.85
2444 5338 4.382291 TCTTTTGTCGCCTAGTGCTTAAA 58.618 39.130 2.39 0.00 38.05 1.52
2568 5472 1.742831 GCGACAATCCCAGTTTGCATA 59.257 47.619 0.00 0.00 0.00 3.14
2599 5530 1.141657 TGATAACAGGAGCATGGGAGC 59.858 52.381 0.00 0.00 0.00 4.70
2660 5592 1.267806 CACTTTCCGCTTTCACATGCT 59.732 47.619 0.00 0.00 0.00 3.79
2726 5658 3.679389 AGAGGCTATGTGAAAACAGTGG 58.321 45.455 0.00 0.00 0.00 4.00
2777 5709 3.635591 CTTGGAATAAGGAATGGTGCCT 58.364 45.455 0.00 0.00 37.35 4.75
2786 5718 4.439253 AGGAATGGTGCCTAGTTATTCC 57.561 45.455 0.00 0.00 44.43 3.01
2787 5719 3.785887 AGGAATGGTGCCTAGTTATTCCA 59.214 43.478 14.56 7.31 45.78 3.53
2806 5738 6.662865 TTCCATGGCTACATCTTTCAAAAA 57.337 33.333 6.96 0.00 34.35 1.94
2807 5739 6.855763 TCCATGGCTACATCTTTCAAAAAT 57.144 33.333 6.96 0.00 34.35 1.82
2878 5811 6.094603 GTGAATTCATGGAGCAATTACAGAGT 59.905 38.462 12.12 0.00 0.00 3.24
2910 5851 2.033372 GACTGGGACTTACTAGCCTCC 58.967 57.143 0.00 0.00 0.00 4.30
2967 5909 1.341209 CAGGTTTCCAAGCTTTGTCCC 59.659 52.381 0.00 0.00 37.06 4.46
2976 5919 2.040412 CAAGCTTTGTCCCTCCCTTAGT 59.960 50.000 0.00 0.00 0.00 2.24
3004 5947 2.959707 ACCCTGCTACTGCTACTATGAC 59.040 50.000 0.00 0.00 40.48 3.06
3027 5970 7.068348 TGACTTATCTACCGCTATCTTGTTTCT 59.932 37.037 0.00 0.00 0.00 2.52
3028 5971 7.203910 ACTTATCTACCGCTATCTTGTTTCTG 58.796 38.462 0.00 0.00 0.00 3.02
3043 5986 0.107263 TTCTGCGGCTATGGCATGAA 60.107 50.000 10.98 0.00 40.09 2.57
3060 6003 8.030744 TGGCATGAACAAATGTTTGATAATTG 57.969 30.769 12.09 4.78 40.55 2.32
3106 6049 2.880443 AGTTGAACAATCCTGGCATGT 58.120 42.857 0.00 0.00 0.00 3.21
3153 6096 2.362077 GCCAGAGTTGTTTGTCCATTGT 59.638 45.455 0.00 0.00 0.00 2.71
3178 6121 5.876357 TGGCATCAACTTTACTAAGGACTT 58.124 37.500 0.00 0.00 35.61 3.01
3179 6122 7.011499 TGGCATCAACTTTACTAAGGACTTA 57.989 36.000 0.00 0.00 35.61 2.24
3212 6163 2.583143 AGCCTACCCAACACTTGTTTC 58.417 47.619 0.00 0.00 35.83 2.78
3213 6164 1.611977 GCCTACCCAACACTTGTTTCC 59.388 52.381 0.00 0.00 35.83 3.13
3214 6165 2.751816 GCCTACCCAACACTTGTTTCCT 60.752 50.000 0.00 0.00 35.83 3.36
3215 6166 3.562182 CCTACCCAACACTTGTTTCCTT 58.438 45.455 0.00 0.00 35.83 3.36
3216 6167 4.721132 CCTACCCAACACTTGTTTCCTTA 58.279 43.478 0.00 0.00 35.83 2.69
3217 6168 5.321927 CCTACCCAACACTTGTTTCCTTAT 58.678 41.667 0.00 0.00 35.83 1.73
3218 6169 5.773176 CCTACCCAACACTTGTTTCCTTATT 59.227 40.000 0.00 0.00 35.83 1.40
3219 6170 6.266786 CCTACCCAACACTTGTTTCCTTATTT 59.733 38.462 0.00 0.00 35.83 1.40
3302 6259 5.116983 ACGCTCGTCTTTTATTTGCATTTTG 59.883 36.000 0.00 0.00 0.00 2.44
3320 6277 7.874016 TGCATTTTGAGCTTGTCTAATTTCATT 59.126 29.630 0.00 0.00 0.00 2.57
3321 6278 8.166706 GCATTTTGAGCTTGTCTAATTTCATTG 58.833 33.333 0.00 0.00 0.00 2.82
3327 6284 8.845227 TGAGCTTGTCTAATTTCATTGTTTACA 58.155 29.630 0.00 0.00 0.00 2.41
3361 6319 0.942410 GTGCGACGACCAAAGCTACA 60.942 55.000 0.00 0.00 0.00 2.74
3377 6335 2.500815 TACAGAGTGCGGCCTCTCCT 62.501 60.000 15.26 8.40 39.81 3.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.636768 AGTAATTTTTGCAGAGGCGC 57.363 45.000 0.00 0.00 45.35 6.53
1 2 4.500477 GCATTAGTAATTTTTGCAGAGGCG 59.500 41.667 2.08 0.00 45.35 5.52
15 16 3.126171 GCATCCAACACACGCATTAGTAA 59.874 43.478 0.00 0.00 0.00 2.24
26 27 1.881324 CATGAGTGTGCATCCAACACA 59.119 47.619 9.17 0.00 45.42 3.72
38 39 3.474600 GAGGAAGCATATGCATGAGTGT 58.525 45.455 28.62 3.91 45.16 3.55
47 48 5.635417 TGAGAGTATCGAGGAAGCATATG 57.365 43.478 0.00 0.00 42.67 1.78
48 49 6.656632 TTTGAGAGTATCGAGGAAGCATAT 57.343 37.500 0.00 0.00 42.67 1.78
201 204 1.146774 TCCCAGTTGAATCCTTTGCCA 59.853 47.619 0.00 0.00 0.00 4.92
265 268 1.908619 TGCATGAAGTCCTCCTGCTAA 59.091 47.619 0.00 0.00 43.83 3.09
276 279 4.924305 ACAAACATTGTCTGCATGAAGT 57.076 36.364 0.00 0.00 40.56 3.01
342 345 1.336332 CCGTCAGGAGAGCATATTCCG 60.336 57.143 0.00 0.00 41.02 4.30
411 414 2.500504 ACCTCATCGGGAACTTAAGGAC 59.499 50.000 7.53 0.09 36.97 3.85
620 651 7.341805 ACAGGAGAAGAATTGCATAGTTACAT 58.658 34.615 0.00 0.00 0.00 2.29
621 652 6.711277 ACAGGAGAAGAATTGCATAGTTACA 58.289 36.000 0.00 0.00 0.00 2.41
622 653 7.464710 CGAACAGGAGAAGAATTGCATAGTTAC 60.465 40.741 0.00 0.00 0.00 2.50
623 654 6.535150 CGAACAGGAGAAGAATTGCATAGTTA 59.465 38.462 0.00 0.00 0.00 2.24
624 655 5.352569 CGAACAGGAGAAGAATTGCATAGTT 59.647 40.000 0.00 0.00 0.00 2.24
625 656 4.872691 CGAACAGGAGAAGAATTGCATAGT 59.127 41.667 0.00 0.00 0.00 2.12
626 657 4.872691 ACGAACAGGAGAAGAATTGCATAG 59.127 41.667 0.00 0.00 0.00 2.23
627 658 4.832248 ACGAACAGGAGAAGAATTGCATA 58.168 39.130 0.00 0.00 0.00 3.14
634 665 0.038526 GGCGACGAACAGGAGAAGAA 60.039 55.000 0.00 0.00 0.00 2.52
654 685 0.937304 TGCAGTCAAGAAGAACGCAC 59.063 50.000 0.00 0.00 0.00 5.34
668 703 1.951510 CCGACAATGTTGCTGCAGT 59.048 52.632 16.64 0.00 0.00 4.40
669 704 1.443194 GCCGACAATGTTGCTGCAG 60.443 57.895 10.11 10.11 0.00 4.41
670 705 1.898094 AGCCGACAATGTTGCTGCA 60.898 52.632 9.96 0.00 31.70 4.41
671 706 1.443194 CAGCCGACAATGTTGCTGC 60.443 57.895 20.34 9.19 43.96 5.25
686 721 2.439156 GTGGTGCCTGGGATCAGC 60.439 66.667 0.00 0.00 39.61 4.26
715 750 1.374252 CCTCAACGTTCCGTCCAGG 60.374 63.158 0.00 0.00 39.99 4.45
728 763 1.203212 TCGTTACCCCTTCTCCCTCAA 60.203 52.381 0.00 0.00 0.00 3.02
729 764 0.410663 TCGTTACCCCTTCTCCCTCA 59.589 55.000 0.00 0.00 0.00 3.86
730 765 1.413077 CATCGTTACCCCTTCTCCCTC 59.587 57.143 0.00 0.00 0.00 4.30
731 766 1.497161 CATCGTTACCCCTTCTCCCT 58.503 55.000 0.00 0.00 0.00 4.20
733 768 0.468648 CCCATCGTTACCCCTTCTCC 59.531 60.000 0.00 0.00 0.00 3.71
734 769 1.201424 ACCCATCGTTACCCCTTCTC 58.799 55.000 0.00 0.00 0.00 2.87
735 770 1.558294 GAACCCATCGTTACCCCTTCT 59.442 52.381 0.00 0.00 33.74 2.85
736 771 1.279846 TGAACCCATCGTTACCCCTTC 59.720 52.381 0.00 0.00 33.74 3.46
737 772 1.364269 TGAACCCATCGTTACCCCTT 58.636 50.000 0.00 0.00 33.74 3.95
738 773 1.489230 GATGAACCCATCGTTACCCCT 59.511 52.381 0.00 0.00 39.70 4.79
762 797 3.300388 TCTACTATCAGTGGCAAGGAGG 58.700 50.000 0.00 0.00 0.00 4.30
812 857 2.827642 GTGCCCTCTGCTGATGCC 60.828 66.667 11.14 2.22 42.00 4.40
816 861 1.332889 ATCATCGTGCCCTCTGCTGA 61.333 55.000 0.00 0.00 42.00 4.26
857 912 7.195374 ACATGCCAATCTTAGTAAGGTCTTA 57.805 36.000 10.02 0.00 0.00 2.10
858 913 6.067217 ACATGCCAATCTTAGTAAGGTCTT 57.933 37.500 10.02 0.00 0.00 3.01
859 914 5.700402 ACATGCCAATCTTAGTAAGGTCT 57.300 39.130 10.02 0.00 0.00 3.85
860 915 7.272978 TCTAACATGCCAATCTTAGTAAGGTC 58.727 38.462 10.02 0.00 0.00 3.85
861 916 7.092846 ACTCTAACATGCCAATCTTAGTAAGGT 60.093 37.037 10.02 0.00 0.00 3.50
862 917 7.275920 ACTCTAACATGCCAATCTTAGTAAGG 58.724 38.462 10.02 0.00 0.00 2.69
863 918 8.723942 AACTCTAACATGCCAATCTTAGTAAG 57.276 34.615 3.29 3.29 0.00 2.34
864 919 8.946085 CAAACTCTAACATGCCAATCTTAGTAA 58.054 33.333 0.00 0.00 0.00 2.24
865 920 7.552687 CCAAACTCTAACATGCCAATCTTAGTA 59.447 37.037 0.00 0.00 0.00 1.82
866 921 6.375455 CCAAACTCTAACATGCCAATCTTAGT 59.625 38.462 0.00 0.00 0.00 2.24
867 922 6.183360 CCCAAACTCTAACATGCCAATCTTAG 60.183 42.308 0.00 0.00 0.00 2.18
874 929 1.202989 TGCCCAAACTCTAACATGCCA 60.203 47.619 0.00 0.00 0.00 4.92
884 939 4.729595 CGTTAAACCTAATGCCCAAACTC 58.270 43.478 0.00 0.00 0.00 3.01
898 2651 4.847757 GGTAGATCGTTTTTGCGTTAAACC 59.152 41.667 0.00 0.00 33.07 3.27
920 2674 1.414181 AGGTGCTCTAATCATCCACGG 59.586 52.381 0.00 0.00 0.00 4.94
934 2688 5.566429 CGCTTCTATCTAATGATGAGGTGCT 60.566 44.000 0.00 0.00 34.32 4.40
935 2689 4.624882 CGCTTCTATCTAATGATGAGGTGC 59.375 45.833 0.00 0.00 34.32 5.01
937 2691 5.536538 TCACGCTTCTATCTAATGATGAGGT 59.463 40.000 0.00 0.00 34.32 3.85
938 2692 6.018589 TCACGCTTCTATCTAATGATGAGG 57.981 41.667 0.00 0.00 34.32 3.86
939 2693 5.572511 GCTCACGCTTCTATCTAATGATGAG 59.427 44.000 0.00 0.00 34.32 2.90
940 2694 5.010012 TGCTCACGCTTCTATCTAATGATGA 59.990 40.000 0.00 0.00 36.97 2.92
941 2695 5.225642 TGCTCACGCTTCTATCTAATGATG 58.774 41.667 0.00 0.00 36.97 3.07
943 2697 4.918810 TGCTCACGCTTCTATCTAATGA 57.081 40.909 0.00 0.00 36.97 2.57
944 2698 5.973651 TTTGCTCACGCTTCTATCTAATG 57.026 39.130 0.00 0.00 36.97 1.90
945 2699 5.294552 GGTTTTGCTCACGCTTCTATCTAAT 59.705 40.000 0.00 0.00 36.97 1.73
946 2700 4.630069 GGTTTTGCTCACGCTTCTATCTAA 59.370 41.667 0.00 0.00 36.97 2.10
947 2701 4.081642 AGGTTTTGCTCACGCTTCTATCTA 60.082 41.667 0.00 0.00 36.97 1.98
948 2702 3.003480 GGTTTTGCTCACGCTTCTATCT 58.997 45.455 0.00 0.00 36.97 1.98
949 2703 3.003480 AGGTTTTGCTCACGCTTCTATC 58.997 45.455 0.00 0.00 36.97 2.08
950 2704 2.744202 CAGGTTTTGCTCACGCTTCTAT 59.256 45.455 0.00 0.00 36.97 1.98
951 2705 2.143122 CAGGTTTTGCTCACGCTTCTA 58.857 47.619 0.00 0.00 36.97 2.10
954 2708 0.381801 CACAGGTTTTGCTCACGCTT 59.618 50.000 0.00 0.00 36.97 4.68
955 2709 0.463654 TCACAGGTTTTGCTCACGCT 60.464 50.000 0.00 0.00 36.97 5.07
957 2711 1.664016 GCATCACAGGTTTTGCTCACG 60.664 52.381 0.00 0.00 32.41 4.35
958 2712 1.336240 GGCATCACAGGTTTTGCTCAC 60.336 52.381 0.00 0.00 35.46 3.51
959 2713 0.961019 GGCATCACAGGTTTTGCTCA 59.039 50.000 0.00 0.00 35.46 4.26
963 2717 2.296752 TCACATGGCATCACAGGTTTTG 59.703 45.455 0.00 0.00 32.38 2.44
964 2718 2.559668 CTCACATGGCATCACAGGTTTT 59.440 45.455 0.00 0.00 32.38 2.43
965 2719 2.165167 CTCACATGGCATCACAGGTTT 58.835 47.619 0.00 0.00 32.38 3.27
966 2720 1.830279 CTCACATGGCATCACAGGTT 58.170 50.000 0.00 0.00 32.38 3.50
967 2721 0.679002 GCTCACATGGCATCACAGGT 60.679 55.000 0.00 0.00 35.50 4.00
969 2723 0.450583 GTGCTCACATGGCATCACAG 59.549 55.000 10.39 2.39 41.86 3.66
970 2724 0.961857 GGTGCTCACATGGCATCACA 60.962 55.000 15.46 0.67 41.86 3.58
971 2725 1.660560 GGGTGCTCACATGGCATCAC 61.661 60.000 0.00 2.03 42.03 3.06
972 2726 1.378911 GGGTGCTCACATGGCATCA 60.379 57.895 0.00 0.00 42.03 3.07
973 2727 2.475466 CGGGTGCTCACATGGCATC 61.475 63.158 0.00 0.00 41.86 3.91
974 2728 2.274948 ATCGGGTGCTCACATGGCAT 62.275 55.000 0.00 0.00 41.86 4.40
975 2729 1.621672 TATCGGGTGCTCACATGGCA 61.622 55.000 0.00 0.00 37.36 4.92
976 2730 0.463654 TTATCGGGTGCTCACATGGC 60.464 55.000 0.00 0.00 0.00 4.40
977 2731 1.138859 TCTTATCGGGTGCTCACATGG 59.861 52.381 0.00 0.00 0.00 3.66
978 2732 2.205074 GTCTTATCGGGTGCTCACATG 58.795 52.381 2.21 0.00 0.00 3.21
979 2733 1.202417 CGTCTTATCGGGTGCTCACAT 60.202 52.381 2.21 0.00 0.00 3.21
980 2734 0.172578 CGTCTTATCGGGTGCTCACA 59.827 55.000 2.21 0.00 0.00 3.58
982 2736 1.141019 GCGTCTTATCGGGTGCTCA 59.859 57.895 0.00 0.00 0.00 4.26
983 2737 1.944676 CGCGTCTTATCGGGTGCTC 60.945 63.158 0.00 0.00 38.59 4.26
984 2738 2.104331 CGCGTCTTATCGGGTGCT 59.896 61.111 0.00 0.00 38.59 4.40
986 2740 2.960129 GCCGCGTCTTATCGGGTG 60.960 66.667 4.92 0.00 45.37 4.61
987 2741 3.426117 CTGCCGCGTCTTATCGGGT 62.426 63.158 4.92 0.00 45.37 5.28
988 2742 2.658593 CTGCCGCGTCTTATCGGG 60.659 66.667 4.92 0.00 45.37 5.14
990 2744 1.516386 ACACTGCCGCGTCTTATCG 60.516 57.895 4.92 0.00 0.00 2.92
991 2745 1.999051 CACACTGCCGCGTCTTATC 59.001 57.895 4.92 0.00 0.00 1.75
992 2746 2.100631 GCACACTGCCGCGTCTTAT 61.101 57.895 4.92 0.00 37.42 1.73
1009 2763 3.223435 AAATCTAATCCGCGCGCGC 62.223 57.895 45.06 42.65 38.24 6.86
1011 2765 0.383124 GTGAAATCTAATCCGCGCGC 60.383 55.000 27.36 23.91 0.00 6.86
1012 2766 0.111704 CGTGAAATCTAATCCGCGCG 60.112 55.000 25.67 25.67 0.00 6.86
1014 2768 3.787826 CAATCGTGAAATCTAATCCGCG 58.212 45.455 0.00 0.00 0.00 6.46
1015 2769 3.248602 AGCAATCGTGAAATCTAATCCGC 59.751 43.478 0.00 0.00 0.00 5.54
1016 2770 6.525121 TTAGCAATCGTGAAATCTAATCCG 57.475 37.500 0.00 0.00 0.00 4.18
1018 2772 9.214953 CTGTTTTAGCAATCGTGAAATCTAATC 57.785 33.333 0.00 0.00 0.00 1.75
1019 2773 8.946085 TCTGTTTTAGCAATCGTGAAATCTAAT 58.054 29.630 0.00 0.00 0.00 1.73
1020 2774 8.317891 TCTGTTTTAGCAATCGTGAAATCTAA 57.682 30.769 0.00 0.00 0.00 2.10
1021 2775 7.899178 TCTGTTTTAGCAATCGTGAAATCTA 57.101 32.000 0.00 0.00 0.00 1.98
1022 2776 6.801539 TCTGTTTTAGCAATCGTGAAATCT 57.198 33.333 0.00 0.00 0.00 2.40
1024 2778 8.539674 GTTTTTCTGTTTTAGCAATCGTGAAAT 58.460 29.630 0.00 0.00 0.00 2.17
1028 2782 6.804534 TGTTTTTCTGTTTTAGCAATCGTG 57.195 33.333 0.00 0.00 0.00 4.35
1029 2783 7.820044 TTTGTTTTTCTGTTTTAGCAATCGT 57.180 28.000 0.00 0.00 0.00 3.73
1030 2784 9.356929 GAATTTGTTTTTCTGTTTTAGCAATCG 57.643 29.630 0.00 0.00 0.00 3.34
1033 2787 9.213799 ACTGAATTTGTTTTTCTGTTTTAGCAA 57.786 25.926 0.00 0.00 33.20 3.91
1034 2788 8.770438 ACTGAATTTGTTTTTCTGTTTTAGCA 57.230 26.923 0.00 0.00 33.20 3.49
1035 2789 8.050170 CGACTGAATTTGTTTTTCTGTTTTAGC 58.950 33.333 0.00 0.00 36.00 3.09
1036 2790 8.531530 CCGACTGAATTTGTTTTTCTGTTTTAG 58.468 33.333 0.00 0.00 36.00 1.85
1066 3816 2.029844 GACGACAGTGAAGGCCTGC 61.030 63.158 5.69 4.07 33.09 4.85
1342 4093 1.072965 CAGGATGAGGGGTGATTAGCC 59.927 57.143 0.00 0.00 40.77 3.93
1345 4096 1.140312 GGCAGGATGAGGGGTGATTA 58.860 55.000 0.00 0.00 39.69 1.75
1354 4105 1.227380 GTGGTAGCGGCAGGATGAG 60.227 63.158 1.45 0.00 39.69 2.90
1406 4157 7.890655 TCTGAAGATAAGCAGGTATAGCTATGA 59.109 37.037 16.77 0.00 42.53 2.15
1427 4178 5.451937 CCAACTACTGTGTCTGAACTCTGAA 60.452 44.000 0.00 0.00 0.00 3.02
1428 4179 4.038042 CCAACTACTGTGTCTGAACTCTGA 59.962 45.833 0.00 0.00 0.00 3.27
1429 4180 4.202161 ACCAACTACTGTGTCTGAACTCTG 60.202 45.833 0.00 0.00 0.00 3.35
1430 4181 3.961408 ACCAACTACTGTGTCTGAACTCT 59.039 43.478 0.00 0.00 0.00 3.24
1431 4182 4.051922 CACCAACTACTGTGTCTGAACTC 58.948 47.826 0.00 0.00 0.00 3.01
1432 4183 3.704566 TCACCAACTACTGTGTCTGAACT 59.295 43.478 0.00 0.00 34.14 3.01
1433 4184 4.051922 CTCACCAACTACTGTGTCTGAAC 58.948 47.826 0.00 0.00 34.14 3.18
1466 4217 4.332828 ACAAAGACAGGGCTATTTGGTAC 58.667 43.478 0.00 0.00 37.04 3.34
1467 4218 4.650972 ACAAAGACAGGGCTATTTGGTA 57.349 40.909 0.00 0.00 37.04 3.25
1537 4288 1.068472 GGATCATACGACGGCTAGTGG 60.068 57.143 0.00 0.00 34.52 4.00
1540 4291 0.168348 CCGGATCATACGACGGCTAG 59.832 60.000 0.00 0.00 39.85 3.42
1549 4300 6.085555 TCTCACATTTAGTCCGGATCATAC 57.914 41.667 7.81 0.00 0.00 2.39
1571 4323 1.061276 GAAAACTGCTCGCGGAAGATC 59.939 52.381 6.13 0.00 0.00 2.75
1679 4433 2.990740 AATGAGGCCCAACTTAACCA 57.009 45.000 0.00 0.00 0.00 3.67
1710 4464 7.973388 ACAAGAATCAAACAAAACAAGATCGAA 59.027 29.630 0.00 0.00 0.00 3.71
1815 4569 0.955428 TGCTCATGACGACTTTGGCC 60.955 55.000 0.00 0.00 0.00 5.36
1819 4573 0.687354 AGGGTGCTCATGACGACTTT 59.313 50.000 0.00 0.00 0.00 2.66
1922 4676 1.073923 TCTCTTTGTTTCCCCTGGAGC 59.926 52.381 0.00 0.00 31.21 4.70
2085 4839 3.801114 TGACAGATAACGATCCAGGTG 57.199 47.619 0.00 0.00 31.81 4.00
2105 4996 7.516198 AAAGTAGAATCACAAGAGCACAATT 57.484 32.000 0.00 0.00 0.00 2.32
2250 5143 8.297426 ACAATGTAGAGACGGTATGTACATATG 58.703 37.037 21.15 20.62 36.44 1.78
2346 5240 2.931068 CGCCCCTGGTGCCTTTTTC 61.931 63.158 0.00 0.00 0.00 2.29
2355 5249 1.248101 GCACAATTAACGCCCCTGGT 61.248 55.000 0.00 0.00 0.00 4.00
2357 5251 0.817013 ATGCACAATTAACGCCCCTG 59.183 50.000 0.00 0.00 0.00 4.45
2443 5337 2.831685 TAGTGCCACAATCGTGTCTT 57.168 45.000 0.00 0.00 41.93 3.01
2444 5338 2.831685 TTAGTGCCACAATCGTGTCT 57.168 45.000 0.00 0.00 41.93 3.41
2568 5472 5.132648 TGCTCCTGTTATCATCCAACCTATT 59.867 40.000 0.00 0.00 0.00 1.73
2660 5592 3.164268 GTCCCAATGGCATGGCATATTA 58.836 45.455 32.36 16.71 39.26 0.98
2726 5658 7.763528 ACTGATCTTGACAGACAGTATTCATTC 59.236 37.037 0.00 0.00 38.54 2.67
2777 5709 7.801104 TGAAAGATGTAGCCATGGAATAACTA 58.199 34.615 18.40 3.70 0.00 2.24
2878 5811 8.727100 AGTAAGTCCCAGTCATCATGAATATA 57.273 34.615 0.00 0.00 0.00 0.86
2910 5851 7.350467 CGGTAGATTGAATGAACATGATCAAG 58.650 38.462 9.94 0.00 35.47 3.02
2967 5909 3.868754 GCAGGGTACAACAACTAAGGGAG 60.869 52.174 0.00 0.00 0.00 4.30
2976 5919 1.697432 AGCAGTAGCAGGGTACAACAA 59.303 47.619 10.84 0.00 45.49 2.83
3004 5947 6.144724 GCAGAAACAAGATAGCGGTAGATAAG 59.855 42.308 0.00 0.00 0.00 1.73
3027 5970 0.679321 TTGTTCATGCCATAGCCGCA 60.679 50.000 0.00 0.00 41.28 5.69
3028 5971 0.455410 TTTGTTCATGCCATAGCCGC 59.545 50.000 0.00 0.00 38.69 6.53
3060 6003 5.405571 CACATGCACGGAGATAAGGTAATAC 59.594 44.000 0.00 0.00 0.00 1.89
3106 6049 7.824289 CACAAGGATAACAAGATAAGAGGACAA 59.176 37.037 0.00 0.00 0.00 3.18
3153 6096 7.195374 AGTCCTTAGTAAAGTTGATGCCATA 57.805 36.000 0.00 0.00 0.00 2.74
3178 6121 5.636123 TGGGTAGGCTTGAACTGAATTTTA 58.364 37.500 0.00 0.00 0.00 1.52
3179 6122 4.479158 TGGGTAGGCTTGAACTGAATTTT 58.521 39.130 0.00 0.00 0.00 1.82
3217 6168 8.759782 CCCTACTGTTAGAGATTAAGGAGAAAA 58.240 37.037 0.00 0.00 0.00 2.29
3218 6169 8.120538 TCCCTACTGTTAGAGATTAAGGAGAAA 58.879 37.037 0.00 0.00 0.00 2.52
3219 6170 7.649715 TCCCTACTGTTAGAGATTAAGGAGAA 58.350 38.462 0.00 0.00 0.00 2.87
3282 6239 6.446318 AGCTCAAAATGCAAATAAAAGACGA 58.554 32.000 0.00 0.00 0.00 4.20
3302 6259 9.846248 ATGTAAACAATGAAATTAGACAAGCTC 57.154 29.630 0.00 0.00 32.46 4.09
3320 6277 5.580691 CACTCTAATCCGCTGAATGTAAACA 59.419 40.000 0.00 0.00 0.00 2.83
3321 6278 5.502544 GCACTCTAATCCGCTGAATGTAAAC 60.503 44.000 0.00 0.00 0.00 2.01
3327 6284 1.409064 TCGCACTCTAATCCGCTGAAT 59.591 47.619 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.