Multiple sequence alignment - TraesCS7B01G240700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G240700 chr7B 100.000 3559 0 0 1 3559 447973803 447977361 0.000000e+00 6573.0
1 TraesCS7B01G240700 chr7B 85.495 586 56 12 189 747 707019669 707020252 5.120000e-163 584.0
2 TraesCS7B01G240700 chr7D 97.760 2768 51 7 801 3559 430230201 430232966 0.000000e+00 4758.0
3 TraesCS7B01G240700 chr7D 97.895 190 4 0 1 190 37396009 37395820 2.650000e-86 329.0
4 TraesCS7B01G240700 chr7D 96.552 58 1 1 747 803 164162195 164162252 1.050000e-15 95.3
5 TraesCS7B01G240700 chr7D 95.082 61 2 1 747 806 186944043 186943983 1.050000e-15 95.3
6 TraesCS7B01G240700 chr7D 95.082 61 2 1 747 806 202483282 202483222 1.050000e-15 95.3
7 TraesCS7B01G240700 chr7A 97.473 1583 37 1 1093 2672 502254998 502253416 0.000000e+00 2699.0
8 TraesCS7B01G240700 chr7A 95.103 919 33 7 2649 3559 502253407 502252493 0.000000e+00 1437.0
9 TraesCS7B01G240700 chr7A 95.172 290 10 2 806 1092 502255466 502255178 4.190000e-124 455.0
10 TraesCS7B01G240700 chr7A 95.000 60 3 0 747 806 634491668 634491609 1.050000e-15 95.3
11 TraesCS7B01G240700 chr2D 96.243 346 10 3 3213 3558 104969966 104969624 6.670000e-157 564.0
12 TraesCS7B01G240700 chr2D 95.376 346 13 3 3213 3558 89148469 89148811 6.720000e-152 547.0
13 TraesCS7B01G240700 chr2D 96.491 57 2 0 747 803 154883835 154883891 1.050000e-15 95.3
14 TraesCS7B01G240700 chr3D 95.817 263 10 1 187 448 182344322 182344584 1.180000e-114 424.0
15 TraesCS7B01G240700 chr3D 97.895 190 4 0 1 190 406084403 406084592 2.650000e-86 329.0
16 TraesCS7B01G240700 chr3D 97.895 190 4 0 1 190 609689438 609689627 2.650000e-86 329.0
17 TraesCS7B01G240700 chr3D 88.038 209 10 2 541 748 182344577 182344771 2.140000e-57 233.0
18 TraesCS7B01G240700 chr3D 98.276 58 0 1 747 803 481840388 481840445 2.260000e-17 100.0
19 TraesCS7B01G240700 chr4B 94.231 260 14 1 3300 3559 41368820 41369078 2.570000e-106 396.0
20 TraesCS7B01G240700 chr4B 90.526 95 4 4 3213 3305 41339201 41339292 1.740000e-23 121.0
21 TraesCS7B01G240700 chr5B 88.462 338 22 11 190 527 136441581 136441261 3.330000e-105 392.0
22 TraesCS7B01G240700 chr4A 93.208 265 17 1 183 446 78013962 78014226 4.310000e-104 388.0
23 TraesCS7B01G240700 chr6D 97.895 190 4 0 1 190 127109421 127109610 2.650000e-86 329.0
24 TraesCS7B01G240700 chr6D 95.000 60 3 0 747 806 263617501 263617442 1.050000e-15 95.3
25 TraesCS7B01G240700 chr5D 97.895 190 4 0 1 190 130528361 130528550 2.650000e-86 329.0
26 TraesCS7B01G240700 chr5D 92.647 68 5 0 1232 1299 473516305 473516372 8.130000e-17 99.0
27 TraesCS7B01G240700 chr1D 97.895 190 4 0 1 190 113718595 113718784 2.650000e-86 329.0
28 TraesCS7B01G240700 chr1D 97.895 190 4 0 1 190 395836628 395836817 2.650000e-86 329.0
29 TraesCS7B01G240700 chr1D 97.895 190 4 0 1 190 442191708 442191519 2.650000e-86 329.0
30 TraesCS7B01G240700 chr1D 97.895 190 4 0 1 190 470005365 470005554 2.650000e-86 329.0
31 TraesCS7B01G240700 chr2B 84.483 116 17 1 637 751 166608738 166608623 2.900000e-21 113.0
32 TraesCS7B01G240700 chr3A 96.721 61 1 1 747 806 499553842 499553782 2.260000e-17 100.0
33 TraesCS7B01G240700 chrUn 96.552 58 1 1 747 803 67740423 67740366 1.050000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G240700 chr7B 447973803 447977361 3558 False 6573.000000 6573 100.000 1 3559 1 chr7B.!!$F1 3558
1 TraesCS7B01G240700 chr7B 707019669 707020252 583 False 584.000000 584 85.495 189 747 1 chr7B.!!$F2 558
2 TraesCS7B01G240700 chr7D 430230201 430232966 2765 False 4758.000000 4758 97.760 801 3559 1 chr7D.!!$F2 2758
3 TraesCS7B01G240700 chr7A 502252493 502255466 2973 True 1530.333333 2699 95.916 806 3559 3 chr7A.!!$R2 2753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
528 529 0.030908 CTTCCGCGAGATGGACTACC 59.969 60.0 8.23 0.0 34.56 3.18 F
670 671 0.036010 AGGTGCTGATCTTTCACGGG 60.036 55.0 0.00 0.0 0.00 5.28 F
671 672 0.036388 GGTGCTGATCTTTCACGGGA 60.036 55.0 0.00 0.0 0.00 5.14 F
1329 1512 0.103937 CCCAGCTCAAGATCCTCGAC 59.896 60.0 0.00 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1842 1.142870 GGCTGCCCAGATGTACCATAA 59.857 52.381 7.66 0.0 0.00 1.90 R
1683 1869 2.203280 TTGGCACCCTCCAACGTG 60.203 61.111 0.00 0.0 40.92 4.49 R
1842 2028 2.283529 GGGTCTCCCGTCTTCAGCA 61.284 63.158 0.00 0.0 32.13 4.41 R
3067 3290 1.669211 GGGAAGAGAGTGTGTGTACGC 60.669 57.143 0.00 0.0 37.58 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.866655 AGTTAATGAGCATTTATTATCCTCCAA 57.133 29.630 0.52 0.00 32.50 3.53
30 31 7.765695 TGAGCATTTATTATCCTCCAAATCC 57.234 36.000 0.00 0.00 0.00 3.01
31 32 7.529555 TGAGCATTTATTATCCTCCAAATCCT 58.470 34.615 0.00 0.00 0.00 3.24
32 33 7.667219 TGAGCATTTATTATCCTCCAAATCCTC 59.333 37.037 0.00 0.00 29.61 3.71
33 34 6.950619 AGCATTTATTATCCTCCAAATCCTCC 59.049 38.462 0.00 0.00 0.00 4.30
34 35 6.721208 GCATTTATTATCCTCCAAATCCTCCA 59.279 38.462 0.00 0.00 0.00 3.86
35 36 7.233348 GCATTTATTATCCTCCAAATCCTCCAA 59.767 37.037 0.00 0.00 0.00 3.53
36 37 9.317827 CATTTATTATCCTCCAAATCCTCCAAT 57.682 33.333 0.00 0.00 0.00 3.16
37 38 8.940397 TTTATTATCCTCCAAATCCTCCAATC 57.060 34.615 0.00 0.00 0.00 2.67
38 39 3.891805 ATCCTCCAAATCCTCCAATCC 57.108 47.619 0.00 0.00 0.00 3.01
39 40 2.572340 TCCTCCAAATCCTCCAATCCA 58.428 47.619 0.00 0.00 0.00 3.41
40 41 2.511218 TCCTCCAAATCCTCCAATCCAG 59.489 50.000 0.00 0.00 0.00 3.86
41 42 2.511218 CCTCCAAATCCTCCAATCCAGA 59.489 50.000 0.00 0.00 0.00 3.86
42 43 3.053395 CCTCCAAATCCTCCAATCCAGAA 60.053 47.826 0.00 0.00 0.00 3.02
43 44 3.950395 CTCCAAATCCTCCAATCCAGAAC 59.050 47.826 0.00 0.00 0.00 3.01
44 45 3.593328 TCCAAATCCTCCAATCCAGAACT 59.407 43.478 0.00 0.00 0.00 3.01
45 46 3.950395 CCAAATCCTCCAATCCAGAACTC 59.050 47.826 0.00 0.00 0.00 3.01
46 47 3.550437 AATCCTCCAATCCAGAACTCG 57.450 47.619 0.00 0.00 0.00 4.18
47 48 0.537188 TCCTCCAATCCAGAACTCGC 59.463 55.000 0.00 0.00 0.00 5.03
48 49 0.462759 CCTCCAATCCAGAACTCGCC 60.463 60.000 0.00 0.00 0.00 5.54
49 50 0.539051 CTCCAATCCAGAACTCGCCT 59.461 55.000 0.00 0.00 0.00 5.52
50 51 0.250234 TCCAATCCAGAACTCGCCTG 59.750 55.000 0.00 0.00 0.00 4.85
51 52 0.036010 CCAATCCAGAACTCGCCTGT 60.036 55.000 0.00 0.00 0.00 4.00
52 53 1.081892 CAATCCAGAACTCGCCTGTG 58.918 55.000 0.00 0.00 0.00 3.66
53 54 0.687354 AATCCAGAACTCGCCTGTGT 59.313 50.000 0.00 0.00 0.00 3.72
54 55 0.687354 ATCCAGAACTCGCCTGTGTT 59.313 50.000 0.00 0.00 34.68 3.32
55 56 1.334160 TCCAGAACTCGCCTGTGTTA 58.666 50.000 0.00 0.00 32.29 2.41
56 57 1.689813 TCCAGAACTCGCCTGTGTTAA 59.310 47.619 0.00 0.00 32.29 2.01
57 58 2.103432 TCCAGAACTCGCCTGTGTTAAA 59.897 45.455 0.00 0.00 32.29 1.52
58 59 2.480419 CCAGAACTCGCCTGTGTTAAAG 59.520 50.000 0.00 0.00 32.29 1.85
59 60 2.480419 CAGAACTCGCCTGTGTTAAAGG 59.520 50.000 0.00 0.00 37.91 3.11
60 61 2.367567 AGAACTCGCCTGTGTTAAAGGA 59.632 45.455 0.00 0.00 36.91 3.36
61 62 2.457366 ACTCGCCTGTGTTAAAGGAG 57.543 50.000 0.00 0.00 36.91 3.69
62 63 1.968493 ACTCGCCTGTGTTAAAGGAGA 59.032 47.619 0.00 0.00 40.79 3.71
63 64 2.743636 TCGCCTGTGTTAAAGGAGAG 57.256 50.000 0.00 0.00 38.53 3.20
64 65 1.275291 TCGCCTGTGTTAAAGGAGAGG 59.725 52.381 0.00 0.00 38.53 3.69
65 66 1.275291 CGCCTGTGTTAAAGGAGAGGA 59.725 52.381 0.00 0.00 36.79 3.71
66 67 2.675317 CGCCTGTGTTAAAGGAGAGGAG 60.675 54.545 0.00 0.00 36.79 3.69
67 68 2.303311 GCCTGTGTTAAAGGAGAGGAGT 59.697 50.000 0.00 0.00 36.91 3.85
68 69 3.244596 GCCTGTGTTAAAGGAGAGGAGTT 60.245 47.826 0.00 0.00 36.91 3.01
69 70 4.020485 GCCTGTGTTAAAGGAGAGGAGTTA 60.020 45.833 0.00 0.00 36.91 2.24
70 71 5.512576 GCCTGTGTTAAAGGAGAGGAGTTAA 60.513 44.000 0.00 0.00 36.91 2.01
71 72 6.531021 CCTGTGTTAAAGGAGAGGAGTTAAA 58.469 40.000 0.00 0.00 36.91 1.52
72 73 7.168905 CCTGTGTTAAAGGAGAGGAGTTAAAT 58.831 38.462 0.00 0.00 36.91 1.40
73 74 7.119846 CCTGTGTTAAAGGAGAGGAGTTAAATG 59.880 40.741 0.00 0.00 36.91 2.32
74 75 7.741785 TGTGTTAAAGGAGAGGAGTTAAATGA 58.258 34.615 0.00 0.00 0.00 2.57
75 76 7.878127 TGTGTTAAAGGAGAGGAGTTAAATGAG 59.122 37.037 0.00 0.00 0.00 2.90
76 77 7.334671 GTGTTAAAGGAGAGGAGTTAAATGAGG 59.665 40.741 0.00 0.00 0.00 3.86
77 78 7.236847 TGTTAAAGGAGAGGAGTTAAATGAGGA 59.763 37.037 0.00 0.00 0.00 3.71
78 79 5.948742 AAGGAGAGGAGTTAAATGAGGAG 57.051 43.478 0.00 0.00 0.00 3.69
79 80 5.213868 AGGAGAGGAGTTAAATGAGGAGA 57.786 43.478 0.00 0.00 0.00 3.71
80 81 5.594777 AGGAGAGGAGTTAAATGAGGAGAA 58.405 41.667 0.00 0.00 0.00 2.87
81 82 6.026186 AGGAGAGGAGTTAAATGAGGAGAAA 58.974 40.000 0.00 0.00 0.00 2.52
82 83 6.156083 AGGAGAGGAGTTAAATGAGGAGAAAG 59.844 42.308 0.00 0.00 0.00 2.62
83 84 6.155393 GGAGAGGAGTTAAATGAGGAGAAAGA 59.845 42.308 0.00 0.00 0.00 2.52
84 85 7.181569 AGAGGAGTTAAATGAGGAGAAAGAG 57.818 40.000 0.00 0.00 0.00 2.85
85 86 6.156083 AGAGGAGTTAAATGAGGAGAAAGAGG 59.844 42.308 0.00 0.00 0.00 3.69
86 87 6.026186 AGGAGTTAAATGAGGAGAAAGAGGA 58.974 40.000 0.00 0.00 0.00 3.71
87 88 6.070481 AGGAGTTAAATGAGGAGAAAGAGGAC 60.070 42.308 0.00 0.00 0.00 3.85
88 89 6.070481 GGAGTTAAATGAGGAGAAAGAGGACT 60.070 42.308 0.00 0.00 0.00 3.85
89 90 7.124448 GGAGTTAAATGAGGAGAAAGAGGACTA 59.876 40.741 0.00 0.00 0.00 2.59
90 91 8.437274 AGTTAAATGAGGAGAAAGAGGACTAA 57.563 34.615 0.00 0.00 0.00 2.24
91 92 9.052365 AGTTAAATGAGGAGAAAGAGGACTAAT 57.948 33.333 0.00 0.00 0.00 1.73
92 93 9.320352 GTTAAATGAGGAGAAAGAGGACTAATC 57.680 37.037 0.00 0.00 0.00 1.75
93 94 6.493189 AATGAGGAGAAAGAGGACTAATCC 57.507 41.667 0.00 0.00 46.69 3.01
108 109 6.296803 GGACTAATCCACATTTTAGTAGGGG 58.703 44.000 0.00 0.00 45.47 4.79
109 110 6.126565 GGACTAATCCACATTTTAGTAGGGGT 60.127 42.308 0.00 0.00 45.47 4.95
110 111 7.071572 GGACTAATCCACATTTTAGTAGGGGTA 59.928 40.741 0.00 0.00 45.47 3.69
111 112 7.799081 ACTAATCCACATTTTAGTAGGGGTAC 58.201 38.462 0.00 0.00 36.99 3.34
112 113 7.147426 ACTAATCCACATTTTAGTAGGGGTACC 60.147 40.741 2.17 2.17 41.38 3.34
153 154 4.505808 GTCTCAAGACTAGTTTTAGCCCC 58.494 47.826 0.00 0.00 41.65 5.80
154 155 4.223255 GTCTCAAGACTAGTTTTAGCCCCT 59.777 45.833 0.00 0.00 41.65 4.79
155 156 4.466726 TCTCAAGACTAGTTTTAGCCCCTC 59.533 45.833 0.00 0.00 0.00 4.30
156 157 4.426704 TCAAGACTAGTTTTAGCCCCTCT 58.573 43.478 0.00 0.00 0.00 3.69
157 158 4.844655 TCAAGACTAGTTTTAGCCCCTCTT 59.155 41.667 0.00 0.00 0.00 2.85
158 159 5.309806 TCAAGACTAGTTTTAGCCCCTCTTT 59.690 40.000 0.00 0.00 0.00 2.52
159 160 6.499350 TCAAGACTAGTTTTAGCCCCTCTTTA 59.501 38.462 0.00 0.00 0.00 1.85
160 161 6.547930 AGACTAGTTTTAGCCCCTCTTTAG 57.452 41.667 0.00 0.00 0.00 1.85
161 162 6.024247 AGACTAGTTTTAGCCCCTCTTTAGT 58.976 40.000 0.00 0.00 0.00 2.24
162 163 6.501102 AGACTAGTTTTAGCCCCTCTTTAGTT 59.499 38.462 0.00 0.00 0.00 2.24
163 164 7.677319 AGACTAGTTTTAGCCCCTCTTTAGTTA 59.323 37.037 0.00 0.00 0.00 2.24
164 165 7.849160 ACTAGTTTTAGCCCCTCTTTAGTTAG 58.151 38.462 0.00 0.00 0.00 2.34
165 166 6.063496 AGTTTTAGCCCCTCTTTAGTTAGG 57.937 41.667 0.00 0.00 0.00 2.69
173 174 3.610911 CCTCTTTAGTTAGGGGTGCTTG 58.389 50.000 0.00 0.00 30.62 4.01
174 175 3.263425 CCTCTTTAGTTAGGGGTGCTTGA 59.737 47.826 0.00 0.00 30.62 3.02
175 176 4.263331 CCTCTTTAGTTAGGGGTGCTTGAA 60.263 45.833 0.00 0.00 30.62 2.69
176 177 5.313280 TCTTTAGTTAGGGGTGCTTGAAA 57.687 39.130 0.00 0.00 0.00 2.69
177 178 5.067954 TCTTTAGTTAGGGGTGCTTGAAAC 58.932 41.667 0.00 0.00 0.00 2.78
178 179 4.717279 TTAGTTAGGGGTGCTTGAAACT 57.283 40.909 0.00 0.00 0.00 2.66
179 180 3.595190 AGTTAGGGGTGCTTGAAACTT 57.405 42.857 0.00 0.00 0.00 2.66
180 181 3.910989 AGTTAGGGGTGCTTGAAACTTT 58.089 40.909 0.00 0.00 0.00 2.66
181 182 5.056553 AGTTAGGGGTGCTTGAAACTTTA 57.943 39.130 0.00 0.00 0.00 1.85
182 183 5.070685 AGTTAGGGGTGCTTGAAACTTTAG 58.929 41.667 0.00 0.00 0.00 1.85
183 184 2.239400 AGGGGTGCTTGAAACTTTAGC 58.761 47.619 0.00 0.00 35.50 3.09
184 185 1.272490 GGGGTGCTTGAAACTTTAGCC 59.728 52.381 0.00 0.00 34.03 3.93
185 186 2.239400 GGGTGCTTGAAACTTTAGCCT 58.761 47.619 0.00 0.00 34.03 4.58
186 187 2.229062 GGGTGCTTGAAACTTTAGCCTC 59.771 50.000 0.00 0.00 34.03 4.70
187 188 3.149981 GGTGCTTGAAACTTTAGCCTCT 58.850 45.455 0.00 0.00 34.03 3.69
217 218 0.322098 TTGGTTGCAGTGTATCCCGG 60.322 55.000 5.93 0.00 0.00 5.73
242 243 2.037847 CCAGCCTTTTCCCTGGGG 59.962 66.667 14.00 2.42 43.87 4.96
243 244 2.037847 CAGCCTTTTCCCTGGGGG 59.962 66.667 14.00 7.17 46.11 5.40
300 301 2.100216 CGCCATTTGGTAGCGCAC 59.900 61.111 11.47 5.73 43.72 5.34
302 303 1.087202 CGCCATTTGGTAGCGCACTA 61.087 55.000 11.47 0.34 43.72 2.74
328 329 4.735358 GACCCCCGCCCTTTCCAC 62.735 72.222 0.00 0.00 0.00 4.02
338 339 3.053896 CTTTCCACGGCCGTTCCC 61.054 66.667 32.11 0.00 0.00 3.97
351 352 1.818363 GTTCCCCGGGAGCGATTTC 60.818 63.158 26.32 1.13 31.21 2.17
354 355 2.203070 CCCGGGAGCGATTTCCTG 60.203 66.667 18.48 0.00 42.30 3.86
355 356 2.731571 CCCGGGAGCGATTTCCTGA 61.732 63.158 18.48 0.00 44.93 3.86
361 362 2.158900 GGGAGCGATTTCCTGATCTCAA 60.159 50.000 0.00 0.00 37.40 3.02
371 372 2.514824 GATCTCAACAGGCCGGGC 60.515 66.667 22.67 22.67 0.00 6.13
392 393 1.000145 GGAAATCCACGAGAAGCGAC 59.000 55.000 0.00 0.00 44.66 5.19
421 422 1.040339 ACGCTGACTCAGATCCTCCC 61.040 60.000 10.45 0.00 32.44 4.30
432 433 1.801309 GATCCTCCCGAGCTTCTCCG 61.801 65.000 0.00 0.00 0.00 4.63
438 439 2.470362 CCGAGCTTCTCCGCGACTA 61.470 63.158 8.23 0.00 34.40 2.59
443 444 2.360350 TTCTCCGCGACTACCCGT 60.360 61.111 8.23 0.00 0.00 5.28
450 451 2.345760 GCGACTACCCGTCCCTTCA 61.346 63.158 0.00 0.00 39.56 3.02
454 455 0.472352 ACTACCCGTCCCTTCAACCA 60.472 55.000 0.00 0.00 0.00 3.67
464 465 1.339535 CCCTTCAACCAGGAGCTTCTC 60.340 57.143 0.00 0.00 35.71 2.87
465 466 1.349026 CCTTCAACCAGGAGCTTCTCA 59.651 52.381 0.00 0.00 35.71 3.27
466 467 2.421619 CTTCAACCAGGAGCTTCTCAC 58.578 52.381 0.00 0.00 31.08 3.51
467 468 1.722034 TCAACCAGGAGCTTCTCACT 58.278 50.000 0.00 0.00 31.08 3.41
468 469 1.620819 TCAACCAGGAGCTTCTCACTC 59.379 52.381 0.00 0.00 31.08 3.51
472 473 2.185608 GGAGCTTCTCACTCCGCC 59.814 66.667 0.00 0.00 44.10 6.13
473 474 2.202676 GAGCTTCTCACTCCGCCG 60.203 66.667 0.00 0.00 0.00 6.46
474 475 4.443266 AGCTTCTCACTCCGCCGC 62.443 66.667 0.00 0.00 0.00 6.53
503 504 3.741325 CCCCCTTCTACCCAGGTG 58.259 66.667 0.00 0.00 0.00 4.00
504 505 1.229853 CCCCCTTCTACCCAGGTGT 60.230 63.158 0.00 0.00 0.00 4.16
505 506 0.845102 CCCCCTTCTACCCAGGTGTT 60.845 60.000 0.00 0.00 0.00 3.32
506 507 0.328258 CCCCTTCTACCCAGGTGTTG 59.672 60.000 0.00 0.00 0.00 3.33
507 508 1.064825 CCCTTCTACCCAGGTGTTGT 58.935 55.000 0.00 0.00 0.00 3.32
508 509 2.262637 CCCTTCTACCCAGGTGTTGTA 58.737 52.381 0.00 0.00 0.00 2.41
509 510 2.027469 CCCTTCTACCCAGGTGTTGTAC 60.027 54.545 0.00 0.00 0.00 2.90
510 511 2.904434 CCTTCTACCCAGGTGTTGTACT 59.096 50.000 0.00 0.00 0.00 2.73
511 512 3.326880 CCTTCTACCCAGGTGTTGTACTT 59.673 47.826 0.00 0.00 0.00 2.24
512 513 4.562963 CCTTCTACCCAGGTGTTGTACTTC 60.563 50.000 0.00 0.00 0.00 3.01
513 514 2.901839 TCTACCCAGGTGTTGTACTTCC 59.098 50.000 0.00 0.00 0.00 3.46
514 515 0.395312 ACCCAGGTGTTGTACTTCCG 59.605 55.000 0.00 0.00 0.00 4.30
515 516 0.953960 CCCAGGTGTTGTACTTCCGC 60.954 60.000 0.00 0.00 0.00 5.54
516 517 1.289109 CCAGGTGTTGTACTTCCGCG 61.289 60.000 0.00 0.00 0.00 6.46
517 518 0.319211 CAGGTGTTGTACTTCCGCGA 60.319 55.000 8.23 0.00 0.00 5.87
518 519 0.038526 AGGTGTTGTACTTCCGCGAG 60.039 55.000 8.23 0.00 0.00 5.03
519 520 0.038892 GGTGTTGTACTTCCGCGAGA 60.039 55.000 8.23 0.00 0.00 4.04
520 521 1.403780 GGTGTTGTACTTCCGCGAGAT 60.404 52.381 8.23 0.00 0.00 2.75
521 522 1.654105 GTGTTGTACTTCCGCGAGATG 59.346 52.381 8.23 8.28 0.00 2.90
522 523 1.278238 GTTGTACTTCCGCGAGATGG 58.722 55.000 8.23 2.35 0.00 3.51
523 524 1.135199 GTTGTACTTCCGCGAGATGGA 60.135 52.381 8.23 0.00 0.00 3.41
524 525 0.454600 TGTACTTCCGCGAGATGGAC 59.545 55.000 8.23 12.76 34.56 4.02
525 526 0.739561 GTACTTCCGCGAGATGGACT 59.260 55.000 8.23 0.00 34.56 3.85
526 527 1.945394 GTACTTCCGCGAGATGGACTA 59.055 52.381 8.23 0.00 34.56 2.59
527 528 0.739561 ACTTCCGCGAGATGGACTAC 59.260 55.000 8.23 0.00 34.56 2.73
528 529 0.030908 CTTCCGCGAGATGGACTACC 59.969 60.000 8.23 0.00 34.56 3.18
529 530 1.389609 TTCCGCGAGATGGACTACCC 61.390 60.000 8.23 0.00 34.56 3.69
530 531 1.828660 CCGCGAGATGGACTACCCT 60.829 63.158 8.23 0.00 35.38 4.34
531 532 1.655329 CGCGAGATGGACTACCCTC 59.345 63.158 0.00 0.00 35.38 4.30
532 533 1.655329 GCGAGATGGACTACCCTCG 59.345 63.158 0.00 0.00 44.65 4.63
533 534 1.102222 GCGAGATGGACTACCCTCGT 61.102 60.000 11.43 0.00 44.14 4.18
534 535 0.663688 CGAGATGGACTACCCTCGTG 59.336 60.000 0.00 0.00 40.48 4.35
535 536 1.033574 GAGATGGACTACCCTCGTGG 58.966 60.000 0.00 0.00 36.24 4.94
536 537 1.043673 AGATGGACTACCCTCGTGGC 61.044 60.000 0.00 0.00 37.83 5.01
537 538 1.001760 ATGGACTACCCTCGTGGCT 59.998 57.895 0.00 0.00 37.83 4.75
538 539 1.043673 ATGGACTACCCTCGTGGCTC 61.044 60.000 0.00 0.00 37.83 4.70
539 540 1.380112 GGACTACCCTCGTGGCTCT 60.380 63.158 0.00 0.00 37.83 4.09
540 541 0.971447 GGACTACCCTCGTGGCTCTT 60.971 60.000 0.00 0.00 37.83 2.85
541 542 0.173708 GACTACCCTCGTGGCTCTTG 59.826 60.000 0.00 0.00 37.83 3.02
542 543 0.542232 ACTACCCTCGTGGCTCTTGT 60.542 55.000 0.00 0.00 37.83 3.16
543 544 0.173708 CTACCCTCGTGGCTCTTGTC 59.826 60.000 0.00 0.00 37.83 3.18
544 545 0.251653 TACCCTCGTGGCTCTTGTCT 60.252 55.000 0.00 0.00 37.83 3.41
545 546 1.216710 CCCTCGTGGCTCTTGTCTC 59.783 63.158 0.00 0.00 0.00 3.36
546 547 1.216710 CCTCGTGGCTCTTGTCTCC 59.783 63.158 0.00 0.00 0.00 3.71
547 548 1.254284 CCTCGTGGCTCTTGTCTCCT 61.254 60.000 0.00 0.00 0.00 3.69
548 549 0.172352 CTCGTGGCTCTTGTCTCCTC 59.828 60.000 0.00 0.00 0.00 3.71
549 550 1.216710 CGTGGCTCTTGTCTCCTCC 59.783 63.158 0.00 0.00 0.00 4.30
550 551 1.216710 GTGGCTCTTGTCTCCTCCG 59.783 63.158 0.00 0.00 0.00 4.63
551 552 1.076727 TGGCTCTTGTCTCCTCCGA 59.923 57.895 0.00 0.00 0.00 4.55
552 553 1.251527 TGGCTCTTGTCTCCTCCGAC 61.252 60.000 0.00 0.00 34.52 4.79
553 554 1.137825 GCTCTTGTCTCCTCCGACG 59.862 63.158 0.00 0.00 36.71 5.12
554 555 1.306642 GCTCTTGTCTCCTCCGACGA 61.307 60.000 0.00 0.00 36.71 4.20
555 556 1.166129 CTCTTGTCTCCTCCGACGAA 58.834 55.000 0.00 0.00 36.71 3.85
556 557 0.879765 TCTTGTCTCCTCCGACGAAC 59.120 55.000 0.00 0.00 36.71 3.95
557 558 0.596577 CTTGTCTCCTCCGACGAACA 59.403 55.000 0.00 0.00 36.71 3.18
558 559 1.000607 CTTGTCTCCTCCGACGAACAA 60.001 52.381 0.00 0.00 36.71 2.83
559 560 0.313043 TGTCTCCTCCGACGAACAAC 59.687 55.000 0.00 0.00 36.71 3.32
560 561 0.313043 GTCTCCTCCGACGAACAACA 59.687 55.000 0.00 0.00 0.00 3.33
561 562 1.034356 TCTCCTCCGACGAACAACAA 58.966 50.000 0.00 0.00 0.00 2.83
562 563 1.137513 CTCCTCCGACGAACAACAAC 58.862 55.000 0.00 0.00 0.00 3.32
563 564 0.748450 TCCTCCGACGAACAACAACT 59.252 50.000 0.00 0.00 0.00 3.16
564 565 1.955778 TCCTCCGACGAACAACAACTA 59.044 47.619 0.00 0.00 0.00 2.24
565 566 2.030540 TCCTCCGACGAACAACAACTAG 60.031 50.000 0.00 0.00 0.00 2.57
566 567 2.030540 CCTCCGACGAACAACAACTAGA 60.031 50.000 0.00 0.00 0.00 2.43
567 568 2.978489 CTCCGACGAACAACAACTAGAC 59.022 50.000 0.00 0.00 0.00 2.59
568 569 2.358582 TCCGACGAACAACAACTAGACA 59.641 45.455 0.00 0.00 0.00 3.41
569 570 3.005050 TCCGACGAACAACAACTAGACAT 59.995 43.478 0.00 0.00 0.00 3.06
570 571 3.364023 CCGACGAACAACAACTAGACATC 59.636 47.826 0.00 0.00 0.00 3.06
571 572 4.227538 CGACGAACAACAACTAGACATCT 58.772 43.478 0.00 0.00 0.00 2.90
572 573 5.388111 CGACGAACAACAACTAGACATCTA 58.612 41.667 0.00 0.00 0.00 1.98
573 574 5.854866 CGACGAACAACAACTAGACATCTAA 59.145 40.000 0.00 0.00 0.00 2.10
574 575 6.527023 CGACGAACAACAACTAGACATCTAAT 59.473 38.462 0.00 0.00 0.00 1.73
575 576 7.253354 CGACGAACAACAACTAGACATCTAATC 60.253 40.741 0.00 0.00 0.00 1.75
576 577 6.527023 ACGAACAACAACTAGACATCTAATCG 59.473 38.462 0.00 0.40 0.00 3.34
577 578 6.745907 CGAACAACAACTAGACATCTAATCGA 59.254 38.462 0.00 0.00 0.00 3.59
578 579 7.272731 CGAACAACAACTAGACATCTAATCGAA 59.727 37.037 0.00 0.00 0.00 3.71
579 580 8.827177 AACAACAACTAGACATCTAATCGAAA 57.173 30.769 0.00 0.00 0.00 3.46
580 581 8.827177 ACAACAACTAGACATCTAATCGAAAA 57.173 30.769 0.00 0.00 0.00 2.29
581 582 8.709646 ACAACAACTAGACATCTAATCGAAAAC 58.290 33.333 0.00 0.00 0.00 2.43
582 583 8.926710 CAACAACTAGACATCTAATCGAAAACT 58.073 33.333 0.00 0.00 0.00 2.66
583 584 9.490379 AACAACTAGACATCTAATCGAAAACTT 57.510 29.630 0.00 0.00 0.00 2.66
586 587 8.859517 ACTAGACATCTAATCGAAAACTTAGC 57.140 34.615 0.00 0.00 0.00 3.09
587 588 8.688151 ACTAGACATCTAATCGAAAACTTAGCT 58.312 33.333 0.00 0.00 0.00 3.32
588 589 7.995463 AGACATCTAATCGAAAACTTAGCTC 57.005 36.000 0.00 0.00 0.00 4.09
589 590 7.777095 AGACATCTAATCGAAAACTTAGCTCT 58.223 34.615 0.00 0.00 0.00 4.09
590 591 7.918562 AGACATCTAATCGAAAACTTAGCTCTC 59.081 37.037 0.00 0.00 0.00 3.20
591 592 6.981559 ACATCTAATCGAAAACTTAGCTCTCC 59.018 38.462 0.00 0.00 0.00 3.71
592 593 5.579718 TCTAATCGAAAACTTAGCTCTCCG 58.420 41.667 0.00 0.00 0.00 4.63
593 594 1.992170 TCGAAAACTTAGCTCTCCGC 58.008 50.000 0.00 0.00 39.57 5.54
603 604 3.523806 GCTCTCCGCTTCTTCAGTT 57.476 52.632 0.00 0.00 35.14 3.16
604 605 1.802069 GCTCTCCGCTTCTTCAGTTT 58.198 50.000 0.00 0.00 35.14 2.66
605 606 2.147150 GCTCTCCGCTTCTTCAGTTTT 58.853 47.619 0.00 0.00 35.14 2.43
606 607 2.550180 GCTCTCCGCTTCTTCAGTTTTT 59.450 45.455 0.00 0.00 35.14 1.94
637 638 3.321445 GGGCTTCCCAGGTCTACC 58.679 66.667 0.00 0.00 44.65 3.18
638 639 2.732619 GGGCTTCCCAGGTCTACCG 61.733 68.421 0.00 0.00 44.65 4.02
639 640 1.988406 GGCTTCCCAGGTCTACCGT 60.988 63.158 0.00 0.00 42.08 4.83
640 641 1.516423 GCTTCCCAGGTCTACCGTC 59.484 63.158 0.00 0.00 42.08 4.79
641 642 1.807886 CTTCCCAGGTCTACCGTCG 59.192 63.158 0.00 0.00 42.08 5.12
642 643 0.679002 CTTCCCAGGTCTACCGTCGA 60.679 60.000 0.00 0.00 42.08 4.20
643 644 0.962356 TTCCCAGGTCTACCGTCGAC 60.962 60.000 5.18 5.18 42.08 4.20
650 651 2.642139 GTCTACCGTCGACCAAATGA 57.358 50.000 10.58 0.00 0.00 2.57
651 652 2.950433 GTCTACCGTCGACCAAATGAA 58.050 47.619 10.58 0.00 0.00 2.57
652 653 2.921754 GTCTACCGTCGACCAAATGAAG 59.078 50.000 10.58 0.00 0.00 3.02
653 654 2.094390 TCTACCGTCGACCAAATGAAGG 60.094 50.000 10.58 5.12 39.31 3.46
654 655 0.395312 ACCGTCGACCAAATGAAGGT 59.605 50.000 10.58 5.81 41.27 3.50
655 656 0.796312 CCGTCGACCAAATGAAGGTG 59.204 55.000 10.58 0.00 40.09 4.00
656 657 0.165944 CGTCGACCAAATGAAGGTGC 59.834 55.000 10.58 0.00 40.09 5.01
657 658 1.523758 GTCGACCAAATGAAGGTGCT 58.476 50.000 3.51 0.00 40.09 4.40
658 659 1.197721 GTCGACCAAATGAAGGTGCTG 59.802 52.381 3.51 0.00 40.09 4.41
659 660 1.071542 TCGACCAAATGAAGGTGCTGA 59.928 47.619 0.00 0.00 40.09 4.26
660 661 2.086869 CGACCAAATGAAGGTGCTGAT 58.913 47.619 0.00 0.00 40.09 2.90
661 662 2.096496 CGACCAAATGAAGGTGCTGATC 59.904 50.000 0.00 0.00 40.09 2.92
662 663 3.350833 GACCAAATGAAGGTGCTGATCT 58.649 45.455 0.00 0.00 40.09 2.75
663 664 3.760684 GACCAAATGAAGGTGCTGATCTT 59.239 43.478 0.00 0.00 40.09 2.40
664 665 4.154942 ACCAAATGAAGGTGCTGATCTTT 58.845 39.130 0.00 0.00 38.13 2.52
665 666 4.219288 ACCAAATGAAGGTGCTGATCTTTC 59.781 41.667 0.00 0.00 38.13 2.62
666 667 4.219070 CCAAATGAAGGTGCTGATCTTTCA 59.781 41.667 0.00 0.00 32.90 2.69
667 668 5.159209 CAAATGAAGGTGCTGATCTTTCAC 58.841 41.667 0.00 0.00 31.34 3.18
668 669 2.416747 TGAAGGTGCTGATCTTTCACG 58.583 47.619 0.00 0.00 0.00 4.35
669 670 1.734465 GAAGGTGCTGATCTTTCACGG 59.266 52.381 0.00 0.00 0.00 4.94
670 671 0.036010 AGGTGCTGATCTTTCACGGG 60.036 55.000 0.00 0.00 0.00 5.28
671 672 0.036388 GGTGCTGATCTTTCACGGGA 60.036 55.000 0.00 0.00 0.00 5.14
672 673 1.407437 GGTGCTGATCTTTCACGGGAT 60.407 52.381 0.00 0.00 0.00 3.85
673 674 1.667724 GTGCTGATCTTTCACGGGATG 59.332 52.381 0.00 0.00 0.00 3.51
674 675 1.278985 TGCTGATCTTTCACGGGATGT 59.721 47.619 0.00 0.00 0.00 3.06
675 676 1.936547 GCTGATCTTTCACGGGATGTC 59.063 52.381 0.00 0.00 0.00 3.06
676 677 2.677902 GCTGATCTTTCACGGGATGTCA 60.678 50.000 0.00 0.00 0.00 3.58
677 678 3.193263 CTGATCTTTCACGGGATGTCAG 58.807 50.000 0.00 0.00 0.00 3.51
678 679 2.567169 TGATCTTTCACGGGATGTCAGT 59.433 45.455 0.00 0.00 0.00 3.41
679 680 3.007940 TGATCTTTCACGGGATGTCAGTT 59.992 43.478 0.00 0.00 0.00 3.16
680 681 3.485463 TCTTTCACGGGATGTCAGTTT 57.515 42.857 0.00 0.00 0.00 2.66
681 682 3.138304 TCTTTCACGGGATGTCAGTTTG 58.862 45.455 0.00 0.00 0.00 2.93
682 683 1.234821 TTCACGGGATGTCAGTTTGC 58.765 50.000 0.00 0.00 0.00 3.68
683 684 0.107643 TCACGGGATGTCAGTTTGCA 59.892 50.000 0.00 0.00 0.00 4.08
684 685 1.167851 CACGGGATGTCAGTTTGCAT 58.832 50.000 0.00 0.00 0.00 3.96
685 686 2.027653 TCACGGGATGTCAGTTTGCATA 60.028 45.455 0.00 0.00 0.00 3.14
686 687 2.746904 CACGGGATGTCAGTTTGCATAA 59.253 45.455 0.00 0.00 0.00 1.90
687 688 3.009723 ACGGGATGTCAGTTTGCATAAG 58.990 45.455 0.00 0.00 0.00 1.73
688 689 3.270027 CGGGATGTCAGTTTGCATAAGA 58.730 45.455 0.00 0.00 0.00 2.10
689 690 3.879295 CGGGATGTCAGTTTGCATAAGAT 59.121 43.478 0.00 0.00 0.00 2.40
690 691 4.260907 CGGGATGTCAGTTTGCATAAGATG 60.261 45.833 0.00 0.00 0.00 2.90
691 692 4.883585 GGGATGTCAGTTTGCATAAGATGA 59.116 41.667 0.00 0.00 0.00 2.92
692 693 5.533903 GGGATGTCAGTTTGCATAAGATGAT 59.466 40.000 0.00 0.00 0.00 2.45
693 694 6.040166 GGGATGTCAGTTTGCATAAGATGATT 59.960 38.462 0.00 0.00 0.00 2.57
694 695 7.417116 GGGATGTCAGTTTGCATAAGATGATTT 60.417 37.037 0.00 0.00 0.00 2.17
695 696 7.646922 GGATGTCAGTTTGCATAAGATGATTTC 59.353 37.037 0.00 0.00 0.00 2.17
696 697 7.451501 TGTCAGTTTGCATAAGATGATTTCA 57.548 32.000 0.00 0.00 0.00 2.69
697 698 7.307694 TGTCAGTTTGCATAAGATGATTTCAC 58.692 34.615 0.00 0.00 0.00 3.18
698 699 6.749118 GTCAGTTTGCATAAGATGATTTCACC 59.251 38.462 0.00 0.00 0.00 4.02
699 700 6.038356 CAGTTTGCATAAGATGATTTCACCC 58.962 40.000 0.00 0.00 0.00 4.61
700 701 5.127682 AGTTTGCATAAGATGATTTCACCCC 59.872 40.000 0.00 0.00 0.00 4.95
701 702 3.213506 TGCATAAGATGATTTCACCCCG 58.786 45.455 0.00 0.00 0.00 5.73
702 703 2.554032 GCATAAGATGATTTCACCCCGG 59.446 50.000 0.00 0.00 0.00 5.73
703 704 3.747388 GCATAAGATGATTTCACCCCGGA 60.747 47.826 0.73 0.00 0.00 5.14
704 705 2.717639 AAGATGATTTCACCCCGGAG 57.282 50.000 0.73 0.00 0.00 4.63
716 717 3.474570 CCGGAGGCTCTTCCCTGG 61.475 72.222 15.23 0.00 46.14 4.45
717 718 3.474570 CGGAGGCTCTTCCCTGGG 61.475 72.222 15.23 6.33 34.69 4.45
718 719 2.041265 GGAGGCTCTTCCCTGGGA 59.959 66.667 12.53 12.53 34.69 4.37
719 720 1.616628 GGAGGCTCTTCCCTGGGAA 60.617 63.158 26.02 26.02 39.66 3.97
720 721 0.990818 GGAGGCTCTTCCCTGGGAAT 60.991 60.000 27.68 13.33 41.23 3.01
721 722 1.695989 GGAGGCTCTTCCCTGGGAATA 60.696 57.143 27.68 19.70 41.23 1.75
722 723 1.696884 GAGGCTCTTCCCTGGGAATAG 59.303 57.143 27.89 27.89 41.23 1.73
726 727 1.696884 CTCTTCCCTGGGAATAGCTCC 59.303 57.143 27.68 0.00 41.23 4.70
745 746 3.823304 CTCCCCTAGCATCCAAATTAAGC 59.177 47.826 0.00 0.00 0.00 3.09
746 747 2.893489 CCCCTAGCATCCAAATTAAGCC 59.107 50.000 0.00 0.00 0.00 4.35
747 748 3.437052 CCCCTAGCATCCAAATTAAGCCT 60.437 47.826 0.00 0.00 0.00 4.58
748 749 4.218312 CCCTAGCATCCAAATTAAGCCTT 58.782 43.478 0.00 0.00 0.00 4.35
749 750 5.385198 CCCTAGCATCCAAATTAAGCCTTA 58.615 41.667 0.00 0.00 0.00 2.69
750 751 5.833131 CCCTAGCATCCAAATTAAGCCTTAA 59.167 40.000 0.00 0.00 0.00 1.85
751 752 6.323739 CCCTAGCATCCAAATTAAGCCTTAAA 59.676 38.462 0.21 0.00 0.00 1.52
752 753 7.147742 CCCTAGCATCCAAATTAAGCCTTAAAA 60.148 37.037 0.21 0.00 0.00 1.52
753 754 8.257306 CCTAGCATCCAAATTAAGCCTTAAAAA 58.743 33.333 0.21 0.00 0.00 1.94
754 755 9.305925 CTAGCATCCAAATTAAGCCTTAAAAAG 57.694 33.333 0.21 0.00 0.00 2.27
755 756 7.906327 AGCATCCAAATTAAGCCTTAAAAAGA 58.094 30.769 0.21 0.00 0.00 2.52
756 757 8.542926 AGCATCCAAATTAAGCCTTAAAAAGAT 58.457 29.630 0.21 0.00 0.00 2.40
757 758 9.166173 GCATCCAAATTAAGCCTTAAAAAGATT 57.834 29.630 0.21 0.00 0.00 2.40
787 788 9.720769 TTTAGTCAGACTAAAATAAGTCCTTGG 57.279 33.333 26.93 0.00 44.84 3.61
788 789 7.554959 AGTCAGACTAAAATAAGTCCTTGGA 57.445 36.000 0.00 0.00 45.86 3.53
789 790 8.152023 AGTCAGACTAAAATAAGTCCTTGGAT 57.848 34.615 0.00 0.00 45.86 3.41
790 791 8.261522 AGTCAGACTAAAATAAGTCCTTGGATC 58.738 37.037 0.00 0.00 45.86 3.36
791 792 7.496263 GTCAGACTAAAATAAGTCCTTGGATCC 59.504 40.741 4.20 4.20 45.86 3.36
792 793 7.182026 TCAGACTAAAATAAGTCCTTGGATCCA 59.818 37.037 11.44 11.44 45.86 3.41
793 794 7.829211 CAGACTAAAATAAGTCCTTGGATCCAA 59.171 37.037 25.53 25.53 45.86 3.53
803 804 0.329261 TTGGATCCAAGCACCCTCTG 59.671 55.000 23.63 0.00 0.00 3.35
864 868 2.490509 GGATTCCAATTCGGTCGGTTTT 59.509 45.455 0.00 0.00 35.57 2.43
1329 1512 0.103937 CCCAGCTCAAGATCCTCGAC 59.896 60.000 0.00 0.00 0.00 4.20
1680 1866 1.922881 TACATCTGGGCAGCCACCA 60.923 57.895 15.19 1.40 36.38 4.17
1683 1869 3.951769 ATCTGGGCAGCCACCAAGC 62.952 63.158 15.19 0.00 37.59 4.01
1719 1905 2.621526 CAAGTTTACGGCCAAGAACCTT 59.378 45.455 2.24 0.00 0.00 3.50
1776 1962 0.251354 TCACTGATGAGGAGCTTGCC 59.749 55.000 0.00 0.00 0.00 4.52
1842 2028 2.025887 CAGGTTACATGGGAAGGCTCTT 60.026 50.000 0.00 0.00 0.00 2.85
1905 2091 3.099905 ACTGTATGCTCTAGTTGCAGGA 58.900 45.455 15.66 6.57 44.04 3.86
1908 2094 2.926778 ATGCTCTAGTTGCAGGATCC 57.073 50.000 2.48 2.48 44.04 3.36
1938 2124 1.880027 GGAATGGCGTACAATGATCCC 59.120 52.381 0.00 0.00 0.00 3.85
2238 2424 1.327764 GCGAAGAAGATAAAGGCACGG 59.672 52.381 0.00 0.00 0.00 4.94
2800 3018 5.823045 GGTTAAATGTCCCTGACCTGAATAG 59.177 44.000 0.00 0.00 0.00 1.73
3023 3246 8.609176 TGTTGTTAGCGGAATATCTAAATTCAC 58.391 33.333 0.00 0.00 37.56 3.18
3032 3255 8.969267 CGGAATATCTAAATTCACAGTAGTCAC 58.031 37.037 0.00 0.00 37.56 3.67
3067 3290 6.539826 TCAGTTTGGATTCATGTAGCACATAG 59.460 38.462 0.00 0.00 36.53 2.23
3080 3303 1.654105 GCACATAGCGTACACACACTC 59.346 52.381 0.00 0.00 0.00 3.51
3340 3566 1.336795 CCGTTTTGAGCCCCATTTGAC 60.337 52.381 0.00 0.00 0.00 3.18
3345 3571 1.384191 GAGCCCCATTTGACCAGGT 59.616 57.895 0.00 0.00 0.00 4.00
3434 3665 2.887152 GAGGCTGCTTATTTGGGTATGG 59.113 50.000 0.00 0.00 0.00 2.74
3441 3672 6.350949 GCTGCTTATTTGGGTATGGAAGAAAA 60.351 38.462 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.866655 TTGGAGGATAATAAATGCTCATTAACT 57.133 29.630 8.48 0.00 38.10 2.24
4 5 8.810041 GGATTTGGAGGATAATAAATGCTCATT 58.190 33.333 8.48 0.00 38.10 2.57
5 6 8.175431 AGGATTTGGAGGATAATAAATGCTCAT 58.825 33.333 8.48 0.00 36.79 2.90
6 7 7.529555 AGGATTTGGAGGATAATAAATGCTCA 58.470 34.615 8.48 0.00 36.79 4.26
7 8 8.049655 GAGGATTTGGAGGATAATAAATGCTC 57.950 38.462 12.10 12.10 44.60 4.26
8 9 6.950619 GGAGGATTTGGAGGATAATAAATGCT 59.049 38.462 0.00 0.00 41.70 3.79
9 10 6.721208 TGGAGGATTTGGAGGATAATAAATGC 59.279 38.462 0.00 0.00 32.99 3.56
10 11 8.710749 TTGGAGGATTTGGAGGATAATAAATG 57.289 34.615 0.00 0.00 0.00 2.32
11 12 9.539194 GATTGGAGGATTTGGAGGATAATAAAT 57.461 33.333 0.00 0.00 0.00 1.40
12 13 7.950124 GGATTGGAGGATTTGGAGGATAATAAA 59.050 37.037 0.00 0.00 0.00 1.40
13 14 7.074880 TGGATTGGAGGATTTGGAGGATAATAA 59.925 37.037 0.00 0.00 0.00 1.40
14 15 6.566091 TGGATTGGAGGATTTGGAGGATAATA 59.434 38.462 0.00 0.00 0.00 0.98
15 16 5.376559 TGGATTGGAGGATTTGGAGGATAAT 59.623 40.000 0.00 0.00 0.00 1.28
16 17 4.731416 TGGATTGGAGGATTTGGAGGATAA 59.269 41.667 0.00 0.00 0.00 1.75
17 18 4.315115 TGGATTGGAGGATTTGGAGGATA 58.685 43.478 0.00 0.00 0.00 2.59
18 19 3.133665 TGGATTGGAGGATTTGGAGGAT 58.866 45.455 0.00 0.00 0.00 3.24
19 20 2.511218 CTGGATTGGAGGATTTGGAGGA 59.489 50.000 0.00 0.00 0.00 3.71
20 21 2.511218 TCTGGATTGGAGGATTTGGAGG 59.489 50.000 0.00 0.00 0.00 4.30
21 22 3.939740 TCTGGATTGGAGGATTTGGAG 57.060 47.619 0.00 0.00 0.00 3.86
22 23 3.593328 AGTTCTGGATTGGAGGATTTGGA 59.407 43.478 0.00 0.00 0.00 3.53
23 24 3.950395 GAGTTCTGGATTGGAGGATTTGG 59.050 47.826 0.00 0.00 0.00 3.28
24 25 3.624861 CGAGTTCTGGATTGGAGGATTTG 59.375 47.826 0.00 0.00 0.00 2.32
25 26 3.878778 CGAGTTCTGGATTGGAGGATTT 58.121 45.455 0.00 0.00 0.00 2.17
26 27 2.420687 GCGAGTTCTGGATTGGAGGATT 60.421 50.000 0.00 0.00 0.00 3.01
27 28 1.139853 GCGAGTTCTGGATTGGAGGAT 59.860 52.381 0.00 0.00 0.00 3.24
28 29 0.537188 GCGAGTTCTGGATTGGAGGA 59.463 55.000 0.00 0.00 0.00 3.71
29 30 0.462759 GGCGAGTTCTGGATTGGAGG 60.463 60.000 0.00 0.00 0.00 4.30
30 31 0.539051 AGGCGAGTTCTGGATTGGAG 59.461 55.000 0.00 0.00 0.00 3.86
31 32 0.250234 CAGGCGAGTTCTGGATTGGA 59.750 55.000 0.00 0.00 0.00 3.53
32 33 0.036010 ACAGGCGAGTTCTGGATTGG 60.036 55.000 0.00 0.00 36.62 3.16
33 34 1.081892 CACAGGCGAGTTCTGGATTG 58.918 55.000 0.00 0.00 36.62 2.67
34 35 0.687354 ACACAGGCGAGTTCTGGATT 59.313 50.000 0.00 0.00 36.62 3.01
35 36 0.687354 AACACAGGCGAGTTCTGGAT 59.313 50.000 0.00 0.00 36.62 3.41
36 37 1.334160 TAACACAGGCGAGTTCTGGA 58.666 50.000 0.00 0.00 36.62 3.86
37 38 2.163818 TTAACACAGGCGAGTTCTGG 57.836 50.000 0.00 0.00 36.62 3.86
38 39 2.480419 CCTTTAACACAGGCGAGTTCTG 59.520 50.000 0.00 0.00 38.16 3.02
39 40 2.367567 TCCTTTAACACAGGCGAGTTCT 59.632 45.455 0.00 0.00 0.00 3.01
40 41 2.737252 CTCCTTTAACACAGGCGAGTTC 59.263 50.000 0.00 0.00 0.00 3.01
41 42 2.367567 TCTCCTTTAACACAGGCGAGTT 59.632 45.455 0.00 0.00 0.00 3.01
42 43 1.968493 TCTCCTTTAACACAGGCGAGT 59.032 47.619 0.00 0.00 0.00 4.18
43 44 2.611518 CTCTCCTTTAACACAGGCGAG 58.388 52.381 0.00 0.00 37.02 5.03
44 45 1.275291 CCTCTCCTTTAACACAGGCGA 59.725 52.381 0.00 0.00 0.00 5.54
45 46 1.275291 TCCTCTCCTTTAACACAGGCG 59.725 52.381 0.00 0.00 0.00 5.52
46 47 2.303311 ACTCCTCTCCTTTAACACAGGC 59.697 50.000 0.00 0.00 0.00 4.85
47 48 4.625607 AACTCCTCTCCTTTAACACAGG 57.374 45.455 0.00 0.00 0.00 4.00
48 49 7.878127 TCATTTAACTCCTCTCCTTTAACACAG 59.122 37.037 0.00 0.00 0.00 3.66
49 50 7.741785 TCATTTAACTCCTCTCCTTTAACACA 58.258 34.615 0.00 0.00 0.00 3.72
50 51 7.334671 CCTCATTTAACTCCTCTCCTTTAACAC 59.665 40.741 0.00 0.00 0.00 3.32
51 52 7.236847 TCCTCATTTAACTCCTCTCCTTTAACA 59.763 37.037 0.00 0.00 0.00 2.41
52 53 7.621796 TCCTCATTTAACTCCTCTCCTTTAAC 58.378 38.462 0.00 0.00 0.00 2.01
53 54 7.678598 TCTCCTCATTTAACTCCTCTCCTTTAA 59.321 37.037 0.00 0.00 0.00 1.52
54 55 7.189794 TCTCCTCATTTAACTCCTCTCCTTTA 58.810 38.462 0.00 0.00 0.00 1.85
55 56 6.026186 TCTCCTCATTTAACTCCTCTCCTTT 58.974 40.000 0.00 0.00 0.00 3.11
56 57 5.594777 TCTCCTCATTTAACTCCTCTCCTT 58.405 41.667 0.00 0.00 0.00 3.36
57 58 5.213868 TCTCCTCATTTAACTCCTCTCCT 57.786 43.478 0.00 0.00 0.00 3.69
58 59 5.941555 TTCTCCTCATTTAACTCCTCTCC 57.058 43.478 0.00 0.00 0.00 3.71
59 60 7.176589 TCTTTCTCCTCATTTAACTCCTCTC 57.823 40.000 0.00 0.00 0.00 3.20
60 61 6.156083 CCTCTTTCTCCTCATTTAACTCCTCT 59.844 42.308 0.00 0.00 0.00 3.69
61 62 6.155393 TCCTCTTTCTCCTCATTTAACTCCTC 59.845 42.308 0.00 0.00 0.00 3.71
62 63 6.026186 TCCTCTTTCTCCTCATTTAACTCCT 58.974 40.000 0.00 0.00 0.00 3.69
63 64 6.070481 AGTCCTCTTTCTCCTCATTTAACTCC 60.070 42.308 0.00 0.00 0.00 3.85
64 65 6.941857 AGTCCTCTTTCTCCTCATTTAACTC 58.058 40.000 0.00 0.00 0.00 3.01
65 66 6.943899 AGTCCTCTTTCTCCTCATTTAACT 57.056 37.500 0.00 0.00 0.00 2.24
66 67 9.320352 GATTAGTCCTCTTTCTCCTCATTTAAC 57.680 37.037 0.00 0.00 0.00 2.01
67 68 8.487028 GGATTAGTCCTCTTTCTCCTCATTTAA 58.513 37.037 0.00 0.00 41.60 1.52
68 69 7.623677 TGGATTAGTCCTCTTTCTCCTCATTTA 59.376 37.037 5.79 0.00 45.32 1.40
69 70 6.445139 TGGATTAGTCCTCTTTCTCCTCATTT 59.555 38.462 5.79 0.00 45.32 2.32
70 71 5.966935 TGGATTAGTCCTCTTTCTCCTCATT 59.033 40.000 5.79 0.00 45.32 2.57
71 72 5.365314 GTGGATTAGTCCTCTTTCTCCTCAT 59.635 44.000 5.79 0.00 45.32 2.90
72 73 4.712337 GTGGATTAGTCCTCTTTCTCCTCA 59.288 45.833 5.79 0.00 45.32 3.86
73 74 4.712337 TGTGGATTAGTCCTCTTTCTCCTC 59.288 45.833 5.79 0.00 45.32 3.71
74 75 4.689062 TGTGGATTAGTCCTCTTTCTCCT 58.311 43.478 5.79 0.00 45.32 3.69
75 76 5.622346 ATGTGGATTAGTCCTCTTTCTCC 57.378 43.478 5.79 0.00 45.32 3.71
76 77 7.929941 AAAATGTGGATTAGTCCTCTTTCTC 57.070 36.000 5.79 0.00 45.32 2.87
77 78 8.606830 ACTAAAATGTGGATTAGTCCTCTTTCT 58.393 33.333 5.79 0.00 45.32 2.52
78 79 8.794335 ACTAAAATGTGGATTAGTCCTCTTTC 57.206 34.615 5.79 0.00 45.32 2.62
79 80 9.892130 CTACTAAAATGTGGATTAGTCCTCTTT 57.108 33.333 5.79 4.04 45.32 2.52
80 81 8.487028 CCTACTAAAATGTGGATTAGTCCTCTT 58.513 37.037 5.79 0.00 45.32 2.85
81 82 7.071321 CCCTACTAAAATGTGGATTAGTCCTCT 59.929 40.741 5.79 0.00 45.32 3.69
82 83 7.217906 CCCTACTAAAATGTGGATTAGTCCTC 58.782 42.308 5.79 2.58 45.32 3.71
83 84 6.101296 CCCCTACTAAAATGTGGATTAGTCCT 59.899 42.308 5.79 0.00 45.32 3.85
84 85 6.126565 ACCCCTACTAAAATGTGGATTAGTCC 60.127 42.308 0.00 0.00 40.53 3.85
85 86 6.896883 ACCCCTACTAAAATGTGGATTAGTC 58.103 40.000 1.78 0.00 40.53 2.59
86 87 6.903340 ACCCCTACTAAAATGTGGATTAGT 57.097 37.500 3.93 3.93 43.05 2.24
87 88 7.222161 GGTACCCCTACTAAAATGTGGATTAG 58.778 42.308 0.00 0.00 35.67 1.73
88 89 7.140522 GGTACCCCTACTAAAATGTGGATTA 57.859 40.000 0.00 0.00 0.00 1.75
89 90 6.009908 GGTACCCCTACTAAAATGTGGATT 57.990 41.667 0.00 0.00 0.00 3.01
90 91 5.641789 GGTACCCCTACTAAAATGTGGAT 57.358 43.478 0.00 0.00 0.00 3.41
131 132 4.223255 AGGGGCTAAAACTAGTCTTGAGAC 59.777 45.833 0.00 2.93 45.08 3.36
132 133 4.426704 AGGGGCTAAAACTAGTCTTGAGA 58.573 43.478 0.00 0.00 0.00 3.27
133 134 4.468153 AGAGGGGCTAAAACTAGTCTTGAG 59.532 45.833 0.00 0.00 0.00 3.02
134 135 4.426704 AGAGGGGCTAAAACTAGTCTTGA 58.573 43.478 0.00 0.00 0.00 3.02
135 136 4.828072 AGAGGGGCTAAAACTAGTCTTG 57.172 45.455 0.00 0.00 0.00 3.02
136 137 5.844773 AAAGAGGGGCTAAAACTAGTCTT 57.155 39.130 0.00 0.00 0.00 3.01
137 138 6.024247 ACTAAAGAGGGGCTAAAACTAGTCT 58.976 40.000 0.00 0.00 0.00 3.24
138 139 6.297080 ACTAAAGAGGGGCTAAAACTAGTC 57.703 41.667 0.00 0.00 0.00 2.59
139 140 6.699242 AACTAAAGAGGGGCTAAAACTAGT 57.301 37.500 0.00 0.00 0.00 2.57
140 141 7.273712 CCTAACTAAAGAGGGGCTAAAACTAG 58.726 42.308 0.00 0.00 0.00 2.57
141 142 7.191593 CCTAACTAAAGAGGGGCTAAAACTA 57.808 40.000 0.00 0.00 0.00 2.24
142 143 6.063496 CCTAACTAAAGAGGGGCTAAAACT 57.937 41.667 0.00 0.00 0.00 2.66
152 153 3.263425 TCAAGCACCCCTAACTAAAGAGG 59.737 47.826 0.00 0.00 0.00 3.69
153 154 4.553330 TCAAGCACCCCTAACTAAAGAG 57.447 45.455 0.00 0.00 0.00 2.85
154 155 4.986054 TTCAAGCACCCCTAACTAAAGA 57.014 40.909 0.00 0.00 0.00 2.52
155 156 5.070685 AGTTTCAAGCACCCCTAACTAAAG 58.929 41.667 0.00 0.00 0.00 1.85
156 157 5.056553 AGTTTCAAGCACCCCTAACTAAA 57.943 39.130 0.00 0.00 0.00 1.85
157 158 4.717279 AGTTTCAAGCACCCCTAACTAA 57.283 40.909 0.00 0.00 0.00 2.24
158 159 4.717279 AAGTTTCAAGCACCCCTAACTA 57.283 40.909 0.00 0.00 0.00 2.24
159 160 3.595190 AAGTTTCAAGCACCCCTAACT 57.405 42.857 0.00 0.00 0.00 2.24
160 161 4.321008 GCTAAAGTTTCAAGCACCCCTAAC 60.321 45.833 5.64 0.00 36.26 2.34
161 162 3.824443 GCTAAAGTTTCAAGCACCCCTAA 59.176 43.478 5.64 0.00 36.26 2.69
162 163 3.418047 GCTAAAGTTTCAAGCACCCCTA 58.582 45.455 5.64 0.00 36.26 3.53
163 164 2.239400 GCTAAAGTTTCAAGCACCCCT 58.761 47.619 5.64 0.00 36.26 4.79
164 165 1.272490 GGCTAAAGTTTCAAGCACCCC 59.728 52.381 11.51 0.00 38.01 4.95
165 166 2.229062 GAGGCTAAAGTTTCAAGCACCC 59.771 50.000 11.51 0.00 38.01 4.61
166 167 3.149981 AGAGGCTAAAGTTTCAAGCACC 58.850 45.455 11.51 3.82 38.01 5.01
167 168 4.837896 AAGAGGCTAAAGTTTCAAGCAC 57.162 40.909 11.51 5.94 38.01 4.40
168 169 5.003804 CCTAAGAGGCTAAAGTTTCAAGCA 58.996 41.667 11.51 0.00 38.01 3.91
169 170 5.553290 CCTAAGAGGCTAAAGTTTCAAGC 57.447 43.478 2.28 2.28 35.47 4.01
183 184 3.019564 CAACCAAATGAGGCCTAAGAGG 58.980 50.000 4.42 7.26 38.80 3.69
184 185 2.424956 GCAACCAAATGAGGCCTAAGAG 59.575 50.000 4.42 0.00 0.00 2.85
185 186 2.224992 TGCAACCAAATGAGGCCTAAGA 60.225 45.455 4.42 0.00 0.00 2.10
186 187 2.165030 CTGCAACCAAATGAGGCCTAAG 59.835 50.000 4.42 0.00 0.00 2.18
187 188 2.170166 CTGCAACCAAATGAGGCCTAA 58.830 47.619 4.42 0.00 0.00 2.69
335 336 3.476419 GGAAATCGCTCCCGGGGA 61.476 66.667 23.50 16.55 41.11 4.81
338 339 0.601311 GATCAGGAAATCGCTCCCGG 60.601 60.000 0.00 0.00 35.95 5.73
354 355 2.514824 GCCCGGCCTGTTGAGATC 60.515 66.667 0.00 0.00 0.00 2.75
355 356 3.329889 TGCCCGGCCTGTTGAGAT 61.330 61.111 7.03 0.00 0.00 2.75
361 362 3.645268 GATTTCCTGCCCGGCCTGT 62.645 63.158 7.03 0.00 0.00 4.00
366 367 2.824041 CGTGGATTTCCTGCCCGG 60.824 66.667 0.00 0.00 36.82 5.73
371 372 1.002366 CGCTTCTCGTGGATTTCCTG 58.998 55.000 0.00 0.00 36.82 3.86
392 393 2.951745 GTCAGCGTCATCGGCTCG 60.952 66.667 0.00 0.00 37.56 5.03
421 422 1.297745 GTAGTCGCGGAGAAGCTCG 60.298 63.158 6.13 0.00 34.40 5.03
438 439 2.526046 CCTGGTTGAAGGGACGGGT 61.526 63.158 0.00 0.00 33.28 5.28
443 444 0.693049 GAAGCTCCTGGTTGAAGGGA 59.307 55.000 0.00 0.00 37.96 4.20
450 451 0.980423 GGAGTGAGAAGCTCCTGGTT 59.020 55.000 4.26 0.00 46.71 3.67
486 487 0.845102 AACACCTGGGTAGAAGGGGG 60.845 60.000 0.00 0.00 43.06 5.40
487 488 0.328258 CAACACCTGGGTAGAAGGGG 59.672 60.000 0.00 0.00 44.45 4.79
488 489 1.064825 ACAACACCTGGGTAGAAGGG 58.935 55.000 0.00 0.00 39.30 3.95
489 490 2.904434 AGTACAACACCTGGGTAGAAGG 59.096 50.000 0.00 0.00 40.93 3.46
490 491 4.562963 GGAAGTACAACACCTGGGTAGAAG 60.563 50.000 0.00 0.00 0.00 2.85
491 492 3.325716 GGAAGTACAACACCTGGGTAGAA 59.674 47.826 0.00 0.00 0.00 2.10
492 493 2.901839 GGAAGTACAACACCTGGGTAGA 59.098 50.000 0.00 0.00 0.00 2.59
493 494 2.353406 CGGAAGTACAACACCTGGGTAG 60.353 54.545 0.00 0.00 0.00 3.18
494 495 1.619827 CGGAAGTACAACACCTGGGTA 59.380 52.381 0.00 0.00 0.00 3.69
495 496 0.395312 CGGAAGTACAACACCTGGGT 59.605 55.000 0.00 0.00 0.00 4.51
496 497 0.953960 GCGGAAGTACAACACCTGGG 60.954 60.000 0.00 0.00 0.00 4.45
497 498 1.289109 CGCGGAAGTACAACACCTGG 61.289 60.000 0.00 0.00 0.00 4.45
498 499 0.319211 TCGCGGAAGTACAACACCTG 60.319 55.000 6.13 0.00 0.00 4.00
499 500 0.038526 CTCGCGGAAGTACAACACCT 60.039 55.000 6.13 0.00 0.00 4.00
500 501 0.038892 TCTCGCGGAAGTACAACACC 60.039 55.000 6.13 0.00 0.00 4.16
501 502 1.654105 CATCTCGCGGAAGTACAACAC 59.346 52.381 6.13 0.00 0.00 3.32
502 503 1.403647 CCATCTCGCGGAAGTACAACA 60.404 52.381 6.13 0.00 0.00 3.33
503 504 1.135199 TCCATCTCGCGGAAGTACAAC 60.135 52.381 6.13 0.00 0.00 3.32
504 505 1.135199 GTCCATCTCGCGGAAGTACAA 60.135 52.381 6.13 0.00 33.29 2.41
505 506 0.454600 GTCCATCTCGCGGAAGTACA 59.545 55.000 6.13 0.00 33.29 2.90
506 507 0.739561 AGTCCATCTCGCGGAAGTAC 59.260 55.000 6.13 0.00 33.29 2.73
507 508 1.945394 GTAGTCCATCTCGCGGAAGTA 59.055 52.381 6.13 0.00 33.29 2.24
508 509 0.739561 GTAGTCCATCTCGCGGAAGT 59.260 55.000 6.13 0.00 33.29 3.01
509 510 0.030908 GGTAGTCCATCTCGCGGAAG 59.969 60.000 6.13 0.00 33.29 3.46
510 511 1.389609 GGGTAGTCCATCTCGCGGAA 61.390 60.000 6.13 0.00 33.29 4.30
511 512 1.826921 GGGTAGTCCATCTCGCGGA 60.827 63.158 6.13 2.40 35.00 5.54
512 513 1.797211 GAGGGTAGTCCATCTCGCGG 61.797 65.000 6.13 0.00 40.85 6.46
513 514 1.655329 GAGGGTAGTCCATCTCGCG 59.345 63.158 0.00 0.00 40.85 5.87
514 515 1.102222 ACGAGGGTAGTCCATCTCGC 61.102 60.000 10.84 0.00 43.91 5.03
515 516 0.663688 CACGAGGGTAGTCCATCTCG 59.336 60.000 9.58 9.58 44.84 4.04
516 517 1.033574 CCACGAGGGTAGTCCATCTC 58.966 60.000 0.00 0.00 41.74 2.75
517 518 1.043673 GCCACGAGGGTAGTCCATCT 61.044 60.000 0.00 0.00 41.74 2.90
518 519 1.043673 AGCCACGAGGGTAGTCCATC 61.044 60.000 0.30 0.00 45.70 3.51
519 520 1.001760 AGCCACGAGGGTAGTCCAT 59.998 57.895 0.30 0.00 45.70 3.41
520 521 2.443781 AGCCACGAGGGTAGTCCA 59.556 61.111 0.30 0.00 45.70 4.02
527 528 1.216710 GAGACAAGAGCCACGAGGG 59.783 63.158 0.00 0.00 40.85 4.30
528 529 1.216710 GGAGACAAGAGCCACGAGG 59.783 63.158 0.00 0.00 38.23 4.63
529 530 0.172352 GAGGAGACAAGAGCCACGAG 59.828 60.000 0.00 0.00 0.00 4.18
530 531 1.251527 GGAGGAGACAAGAGCCACGA 61.252 60.000 0.00 0.00 0.00 4.35
531 532 1.216710 GGAGGAGACAAGAGCCACG 59.783 63.158 0.00 0.00 0.00 4.94
532 533 1.216710 CGGAGGAGACAAGAGCCAC 59.783 63.158 0.00 0.00 0.00 5.01
533 534 1.076727 TCGGAGGAGACAAGAGCCA 59.923 57.895 0.00 0.00 0.00 4.75
534 535 1.513622 GTCGGAGGAGACAAGAGCC 59.486 63.158 0.00 0.00 40.65 4.70
535 536 1.137825 CGTCGGAGGAGACAAGAGC 59.862 63.158 0.00 0.00 40.98 4.09
536 537 1.135632 GTTCGTCGGAGGAGACAAGAG 60.136 57.143 0.31 0.00 40.98 2.85
537 538 0.879765 GTTCGTCGGAGGAGACAAGA 59.120 55.000 0.31 0.00 40.98 3.02
538 539 0.596577 TGTTCGTCGGAGGAGACAAG 59.403 55.000 10.86 0.00 40.98 3.16
539 540 1.034356 TTGTTCGTCGGAGGAGACAA 58.966 50.000 16.78 16.78 40.98 3.18
540 541 0.313043 GTTGTTCGTCGGAGGAGACA 59.687 55.000 0.31 6.17 40.98 3.41
541 542 0.313043 TGTTGTTCGTCGGAGGAGAC 59.687 55.000 0.31 3.95 37.76 3.36
542 543 1.034356 TTGTTGTTCGTCGGAGGAGA 58.966 50.000 0.31 0.00 0.00 3.71
543 544 1.137513 GTTGTTGTTCGTCGGAGGAG 58.862 55.000 0.31 0.00 0.00 3.69
544 545 0.748450 AGTTGTTGTTCGTCGGAGGA 59.252 50.000 0.00 0.00 0.00 3.71
545 546 2.030540 TCTAGTTGTTGTTCGTCGGAGG 60.031 50.000 0.00 0.00 0.00 4.30
546 547 2.978489 GTCTAGTTGTTGTTCGTCGGAG 59.022 50.000 0.00 0.00 0.00 4.63
547 548 2.358582 TGTCTAGTTGTTGTTCGTCGGA 59.641 45.455 0.00 0.00 0.00 4.55
548 549 2.734670 TGTCTAGTTGTTGTTCGTCGG 58.265 47.619 0.00 0.00 0.00 4.79
549 550 4.227538 AGATGTCTAGTTGTTGTTCGTCG 58.772 43.478 0.00 0.00 0.00 5.12
550 551 7.253354 CGATTAGATGTCTAGTTGTTGTTCGTC 60.253 40.741 0.00 0.00 0.00 4.20
551 552 6.527023 CGATTAGATGTCTAGTTGTTGTTCGT 59.473 38.462 0.00 0.00 0.00 3.85
552 553 6.745907 TCGATTAGATGTCTAGTTGTTGTTCG 59.254 38.462 0.00 0.00 0.00 3.95
553 554 8.462143 TTCGATTAGATGTCTAGTTGTTGTTC 57.538 34.615 0.00 0.00 0.00 3.18
554 555 8.827177 TTTCGATTAGATGTCTAGTTGTTGTT 57.173 30.769 0.00 0.00 0.00 2.83
555 556 8.709646 GTTTTCGATTAGATGTCTAGTTGTTGT 58.290 33.333 0.00 0.00 0.00 3.32
556 557 8.926710 AGTTTTCGATTAGATGTCTAGTTGTTG 58.073 33.333 0.00 0.00 0.00 3.33
557 558 9.490379 AAGTTTTCGATTAGATGTCTAGTTGTT 57.510 29.630 0.00 0.00 0.00 2.83
560 561 9.303537 GCTAAGTTTTCGATTAGATGTCTAGTT 57.696 33.333 7.53 0.00 31.87 2.24
561 562 8.688151 AGCTAAGTTTTCGATTAGATGTCTAGT 58.312 33.333 7.53 0.00 31.87 2.57
562 563 9.176181 GAGCTAAGTTTTCGATTAGATGTCTAG 57.824 37.037 7.53 0.00 31.87 2.43
563 564 8.904834 AGAGCTAAGTTTTCGATTAGATGTCTA 58.095 33.333 7.53 0.00 31.87 2.59
564 565 7.777095 AGAGCTAAGTTTTCGATTAGATGTCT 58.223 34.615 7.53 3.76 31.87 3.41
565 566 7.168469 GGAGAGCTAAGTTTTCGATTAGATGTC 59.832 40.741 9.29 9.29 37.12 3.06
566 567 6.981559 GGAGAGCTAAGTTTTCGATTAGATGT 59.018 38.462 7.53 0.22 31.87 3.06
567 568 6.143118 CGGAGAGCTAAGTTTTCGATTAGATG 59.857 42.308 7.53 0.00 31.87 2.90
568 569 6.210078 CGGAGAGCTAAGTTTTCGATTAGAT 58.790 40.000 7.53 1.36 31.87 1.98
569 570 5.579718 CGGAGAGCTAAGTTTTCGATTAGA 58.420 41.667 7.53 0.00 31.87 2.10
570 571 4.207429 GCGGAGAGCTAAGTTTTCGATTAG 59.793 45.833 0.00 0.11 44.04 1.73
571 572 4.110482 GCGGAGAGCTAAGTTTTCGATTA 58.890 43.478 0.00 0.00 44.04 1.75
572 573 2.930682 GCGGAGAGCTAAGTTTTCGATT 59.069 45.455 0.00 0.00 44.04 3.34
573 574 2.541556 GCGGAGAGCTAAGTTTTCGAT 58.458 47.619 0.00 0.00 44.04 3.59
574 575 1.992170 GCGGAGAGCTAAGTTTTCGA 58.008 50.000 0.00 0.00 44.04 3.71
620 621 2.732619 CGGTAGACCTGGGAAGCCC 61.733 68.421 0.00 0.00 45.71 5.19
621 622 1.957765 GACGGTAGACCTGGGAAGCC 61.958 65.000 0.00 0.00 0.00 4.35
622 623 1.516423 GACGGTAGACCTGGGAAGC 59.484 63.158 0.00 0.00 0.00 3.86
623 624 0.679002 TCGACGGTAGACCTGGGAAG 60.679 60.000 0.00 0.00 0.00 3.46
624 625 0.962356 GTCGACGGTAGACCTGGGAA 60.962 60.000 9.90 0.00 32.78 3.97
625 626 1.377725 GTCGACGGTAGACCTGGGA 60.378 63.158 9.90 0.00 32.78 4.37
626 627 3.194719 GTCGACGGTAGACCTGGG 58.805 66.667 9.90 0.00 32.78 4.45
631 632 2.642139 TCATTTGGTCGACGGTAGAC 57.358 50.000 9.92 12.29 37.86 2.59
632 633 2.094390 CCTTCATTTGGTCGACGGTAGA 60.094 50.000 9.92 0.87 0.00 2.59
633 634 2.268298 CCTTCATTTGGTCGACGGTAG 58.732 52.381 9.92 0.00 0.00 3.18
634 635 1.619827 ACCTTCATTTGGTCGACGGTA 59.380 47.619 9.92 0.00 32.42 4.02
635 636 0.395312 ACCTTCATTTGGTCGACGGT 59.605 50.000 9.92 5.56 31.03 4.83
636 637 0.796312 CACCTTCATTTGGTCGACGG 59.204 55.000 9.92 4.88 35.28 4.79
637 638 0.165944 GCACCTTCATTTGGTCGACG 59.834 55.000 9.92 0.00 35.28 5.12
638 639 1.197721 CAGCACCTTCATTTGGTCGAC 59.802 52.381 7.13 7.13 35.28 4.20
639 640 1.071542 TCAGCACCTTCATTTGGTCGA 59.928 47.619 0.00 0.00 35.28 4.20
640 641 1.522668 TCAGCACCTTCATTTGGTCG 58.477 50.000 0.00 0.00 35.28 4.79
641 642 3.350833 AGATCAGCACCTTCATTTGGTC 58.649 45.455 0.00 0.00 35.28 4.02
642 643 3.446442 AGATCAGCACCTTCATTTGGT 57.554 42.857 0.00 0.00 38.53 3.67
643 644 4.219070 TGAAAGATCAGCACCTTCATTTGG 59.781 41.667 0.00 0.00 0.00 3.28
644 645 5.159209 GTGAAAGATCAGCACCTTCATTTG 58.841 41.667 0.00 0.00 35.88 2.32
645 646 4.083110 CGTGAAAGATCAGCACCTTCATTT 60.083 41.667 0.00 0.00 35.88 2.32
646 647 3.438087 CGTGAAAGATCAGCACCTTCATT 59.562 43.478 0.00 0.00 35.88 2.57
647 648 3.005554 CGTGAAAGATCAGCACCTTCAT 58.994 45.455 0.00 0.00 35.88 2.57
648 649 2.416747 CGTGAAAGATCAGCACCTTCA 58.583 47.619 0.00 0.00 35.88 3.02
649 650 1.734465 CCGTGAAAGATCAGCACCTTC 59.266 52.381 0.00 0.00 35.88 3.46
650 651 1.611673 CCCGTGAAAGATCAGCACCTT 60.612 52.381 0.00 0.00 35.88 3.50
651 652 0.036010 CCCGTGAAAGATCAGCACCT 60.036 55.000 0.00 0.00 35.88 4.00
652 653 0.036388 TCCCGTGAAAGATCAGCACC 60.036 55.000 0.00 0.00 35.88 5.01
653 654 1.667724 CATCCCGTGAAAGATCAGCAC 59.332 52.381 0.00 0.00 35.88 4.40
654 655 1.278985 ACATCCCGTGAAAGATCAGCA 59.721 47.619 0.00 0.00 35.88 4.41
655 656 1.936547 GACATCCCGTGAAAGATCAGC 59.063 52.381 0.00 0.00 35.88 4.26
656 657 3.193263 CTGACATCCCGTGAAAGATCAG 58.807 50.000 0.00 0.00 35.88 2.90
657 658 2.567169 ACTGACATCCCGTGAAAGATCA 59.433 45.455 0.00 0.00 0.00 2.92
658 659 3.252974 ACTGACATCCCGTGAAAGATC 57.747 47.619 0.00 0.00 0.00 2.75
659 660 3.703001 AACTGACATCCCGTGAAAGAT 57.297 42.857 0.00 0.00 0.00 2.40
660 661 3.138304 CAAACTGACATCCCGTGAAAGA 58.862 45.455 0.00 0.00 0.00 2.52
661 662 2.350772 GCAAACTGACATCCCGTGAAAG 60.351 50.000 0.00 0.00 0.00 2.62
662 663 1.606668 GCAAACTGACATCCCGTGAAA 59.393 47.619 0.00 0.00 0.00 2.69
663 664 1.234821 GCAAACTGACATCCCGTGAA 58.765 50.000 0.00 0.00 0.00 3.18
664 665 0.107643 TGCAAACTGACATCCCGTGA 59.892 50.000 0.00 0.00 0.00 4.35
665 666 1.167851 ATGCAAACTGACATCCCGTG 58.832 50.000 0.00 0.00 0.00 4.94
666 667 2.779755 TATGCAAACTGACATCCCGT 57.220 45.000 0.00 0.00 0.00 5.28
667 668 3.270027 TCTTATGCAAACTGACATCCCG 58.730 45.455 0.00 0.00 0.00 5.14
668 669 4.883585 TCATCTTATGCAAACTGACATCCC 59.116 41.667 0.00 0.00 0.00 3.85
669 670 6.630444 ATCATCTTATGCAAACTGACATCC 57.370 37.500 0.00 0.00 0.00 3.51
670 671 8.186163 TGAAATCATCTTATGCAAACTGACATC 58.814 33.333 0.00 0.00 0.00 3.06
671 672 7.972277 GTGAAATCATCTTATGCAAACTGACAT 59.028 33.333 0.00 0.00 0.00 3.06
672 673 7.307694 GTGAAATCATCTTATGCAAACTGACA 58.692 34.615 0.00 0.00 0.00 3.58
673 674 6.749118 GGTGAAATCATCTTATGCAAACTGAC 59.251 38.462 0.00 0.00 0.00 3.51
674 675 6.127647 GGGTGAAATCATCTTATGCAAACTGA 60.128 38.462 0.00 0.00 0.00 3.41
675 676 6.038356 GGGTGAAATCATCTTATGCAAACTG 58.962 40.000 0.00 0.00 0.00 3.16
676 677 5.127682 GGGGTGAAATCATCTTATGCAAACT 59.872 40.000 0.00 0.00 0.00 2.66
677 678 5.351458 GGGGTGAAATCATCTTATGCAAAC 58.649 41.667 0.00 0.00 0.00 2.93
678 679 4.097741 CGGGGTGAAATCATCTTATGCAAA 59.902 41.667 0.00 0.00 0.00 3.68
679 680 3.631686 CGGGGTGAAATCATCTTATGCAA 59.368 43.478 0.00 0.00 0.00 4.08
680 681 3.213506 CGGGGTGAAATCATCTTATGCA 58.786 45.455 0.00 0.00 0.00 3.96
681 682 2.554032 CCGGGGTGAAATCATCTTATGC 59.446 50.000 0.00 0.00 0.00 3.14
682 683 4.067896 CTCCGGGGTGAAATCATCTTATG 58.932 47.826 0.00 0.00 0.00 1.90
683 684 3.073062 CCTCCGGGGTGAAATCATCTTAT 59.927 47.826 0.00 0.00 0.00 1.73
684 685 2.438021 CCTCCGGGGTGAAATCATCTTA 59.562 50.000 0.00 0.00 0.00 2.10
685 686 1.212935 CCTCCGGGGTGAAATCATCTT 59.787 52.381 0.00 0.00 0.00 2.40
686 687 0.839946 CCTCCGGGGTGAAATCATCT 59.160 55.000 0.00 0.00 0.00 2.90
687 688 0.819666 GCCTCCGGGGTGAAATCATC 60.820 60.000 0.00 0.00 37.43 2.92
688 689 1.227383 GCCTCCGGGGTGAAATCAT 59.773 57.895 0.00 0.00 37.43 2.45
689 690 1.910580 GAGCCTCCGGGGTGAAATCA 61.911 60.000 0.00 0.00 44.22 2.57
690 691 1.153147 GAGCCTCCGGGGTGAAATC 60.153 63.158 0.00 0.00 44.22 2.17
691 692 1.208165 AAGAGCCTCCGGGGTGAAAT 61.208 55.000 0.00 0.00 44.22 2.17
692 693 1.838073 GAAGAGCCTCCGGGGTGAAA 61.838 60.000 0.00 0.00 44.22 2.69
693 694 2.203938 AAGAGCCTCCGGGGTGAA 60.204 61.111 0.00 0.00 44.22 3.18
694 695 2.683933 GAAGAGCCTCCGGGGTGA 60.684 66.667 0.00 0.00 44.22 4.02
695 696 3.787001 GGAAGAGCCTCCGGGGTG 61.787 72.222 0.00 0.00 44.22 4.61
697 698 4.806339 AGGGAAGAGCCTCCGGGG 62.806 72.222 0.00 0.00 36.21 5.73
698 699 3.474570 CAGGGAAGAGCCTCCGGG 61.475 72.222 0.00 0.00 36.21 5.73
699 700 3.474570 CCAGGGAAGAGCCTCCGG 61.475 72.222 0.00 0.00 36.21 5.14
700 701 3.474570 CCCAGGGAAGAGCCTCCG 61.475 72.222 0.00 0.00 36.21 4.63
701 702 0.990818 ATTCCCAGGGAAGAGCCTCC 60.991 60.000 25.76 0.00 45.48 4.30
702 703 1.696884 CTATTCCCAGGGAAGAGCCTC 59.303 57.143 26.80 0.00 45.48 4.70
703 704 1.813102 CTATTCCCAGGGAAGAGCCT 58.187 55.000 26.80 12.63 45.48 4.58
707 708 1.807814 GGAGCTATTCCCAGGGAAGA 58.192 55.000 25.76 20.59 45.48 2.87
723 724 3.823304 GCTTAATTTGGATGCTAGGGGAG 59.177 47.826 0.00 0.00 0.00 4.30
724 725 3.436470 GGCTTAATTTGGATGCTAGGGGA 60.436 47.826 0.00 0.00 0.00 4.81
725 726 2.893489 GGCTTAATTTGGATGCTAGGGG 59.107 50.000 0.00 0.00 0.00 4.79
726 727 3.837355 AGGCTTAATTTGGATGCTAGGG 58.163 45.455 0.00 0.00 0.00 3.53
727 728 6.959639 TTAAGGCTTAATTTGGATGCTAGG 57.040 37.500 15.49 0.00 0.00 3.02
728 729 9.305925 CTTTTTAAGGCTTAATTTGGATGCTAG 57.694 33.333 19.65 3.32 0.00 3.42
729 730 9.030452 TCTTTTTAAGGCTTAATTTGGATGCTA 57.970 29.630 19.65 0.00 0.00 3.49
730 731 7.906327 TCTTTTTAAGGCTTAATTTGGATGCT 58.094 30.769 19.65 0.00 0.00 3.79
731 732 8.722480 ATCTTTTTAAGGCTTAATTTGGATGC 57.278 30.769 19.65 0.00 0.00 3.91
761 762 9.720769 CCAAGGACTTATTTTAGTCTGACTAAA 57.279 33.333 29.65 29.65 45.78 1.85
762 763 9.096823 TCCAAGGACTTATTTTAGTCTGACTAA 57.903 33.333 22.80 22.80 43.26 2.24
763 764 8.660295 TCCAAGGACTTATTTTAGTCTGACTA 57.340 34.615 13.34 13.34 43.26 2.59
764 765 7.554959 TCCAAGGACTTATTTTAGTCTGACT 57.445 36.000 15.57 15.57 43.26 3.41
765 766 7.496263 GGATCCAAGGACTTATTTTAGTCTGAC 59.504 40.741 6.95 0.00 43.26 3.51
766 767 7.182026 TGGATCCAAGGACTTATTTTAGTCTGA 59.818 37.037 13.46 0.00 43.26 3.27
767 768 7.338710 TGGATCCAAGGACTTATTTTAGTCTG 58.661 38.462 13.46 0.00 43.26 3.51
768 769 7.510675 TGGATCCAAGGACTTATTTTAGTCT 57.489 36.000 13.46 0.00 43.26 3.24
769 770 8.214721 CTTGGATCCAAGGACTTATTTTAGTC 57.785 38.462 37.26 0.00 46.88 2.59
784 785 0.329261 CAGAGGGTGCTTGGATCCAA 59.671 55.000 25.53 25.53 0.00 3.53
785 786 1.565390 CCAGAGGGTGCTTGGATCCA 61.565 60.000 11.44 11.44 0.00 3.41
786 787 1.225704 CCAGAGGGTGCTTGGATCC 59.774 63.158 4.20 4.20 0.00 3.36
787 788 1.225704 CCCAGAGGGTGCTTGGATC 59.774 63.158 0.00 0.00 38.25 3.36
788 789 2.988839 GCCCAGAGGGTGCTTGGAT 61.989 63.158 3.68 0.00 46.51 3.41
789 790 3.650950 GCCCAGAGGGTGCTTGGA 61.651 66.667 3.68 0.00 46.51 3.53
790 791 3.970410 TGCCCAGAGGGTGCTTGG 61.970 66.667 3.68 0.00 46.51 3.61
791 792 2.674380 GTGCCCAGAGGGTGCTTG 60.674 66.667 3.68 0.00 46.51 4.01
792 793 2.417558 GAAGTGCCCAGAGGGTGCTT 62.418 60.000 3.68 8.23 46.51 3.91
793 794 2.856000 AAGTGCCCAGAGGGTGCT 60.856 61.111 3.68 0.00 46.51 4.40
794 795 2.360475 GAAGTGCCCAGAGGGTGC 60.360 66.667 3.68 0.00 46.51 5.01
795 796 0.038744 ATTGAAGTGCCCAGAGGGTG 59.961 55.000 3.68 0.00 46.51 4.61
796 797 0.779997 AATTGAAGTGCCCAGAGGGT 59.220 50.000 3.68 0.00 46.51 4.34
798 799 4.952335 AGATTAAATTGAAGTGCCCAGAGG 59.048 41.667 0.00 0.00 0.00 3.69
799 800 5.678107 GCAGATTAAATTGAAGTGCCCAGAG 60.678 44.000 2.38 0.00 0.00 3.35
803 804 3.195396 TGGCAGATTAAATTGAAGTGCCC 59.805 43.478 21.46 9.91 46.94 5.36
864 868 2.993539 TTGACGCGTCAAACCATCA 58.006 47.368 43.05 25.14 45.56 3.07
1656 1842 1.142870 GGCTGCCCAGATGTACCATAA 59.857 52.381 7.66 0.00 0.00 1.90
1683 1869 2.203280 TTGGCACCCTCCAACGTG 60.203 61.111 0.00 0.00 40.92 4.49
1719 1905 2.363975 GGCCGGGTGGTACATGAGA 61.364 63.158 2.18 0.00 44.52 3.27
1776 1962 4.778143 AGCCCCTTTAGCCGCACG 62.778 66.667 0.00 0.00 0.00 5.34
1842 2028 2.283529 GGGTCTCCCGTCTTCAGCA 61.284 63.158 0.00 0.00 32.13 4.41
1938 2124 7.023575 CCAAATCATACTTCTTTCCTTTGTCG 58.976 38.462 0.00 0.00 0.00 4.35
2856 3074 2.277692 CATCTTGCACATGCGCGG 60.278 61.111 8.83 0.00 45.83 6.46
3023 3246 8.543774 CAAACTGAACTAAAGAAGTGACTACTG 58.456 37.037 0.00 0.00 38.88 2.74
3032 3255 8.571336 ACATGAATCCAAACTGAACTAAAGAAG 58.429 33.333 0.00 0.00 0.00 2.85
3067 3290 1.669211 GGGAAGAGAGTGTGTGTACGC 60.669 57.143 0.00 0.00 37.58 4.42
3168 3391 3.185880 AGTAAGTACTTCTCCCCTGCA 57.814 47.619 12.39 0.00 31.13 4.41
3282 3508 6.809869 AGGGCATTCACAAAGAATTTATAGC 58.190 36.000 0.00 0.00 44.48 2.97
3283 3509 7.134815 CGAGGGCATTCACAAAGAATTTATAG 58.865 38.462 0.00 0.00 44.48 1.31
3284 3510 6.601613 ACGAGGGCATTCACAAAGAATTTATA 59.398 34.615 0.00 0.00 44.48 0.98
3286 3512 4.764823 ACGAGGGCATTCACAAAGAATTTA 59.235 37.500 0.00 0.00 44.48 1.40
3287 3513 3.573967 ACGAGGGCATTCACAAAGAATTT 59.426 39.130 0.00 0.00 44.48 1.82
3288 3514 3.157087 ACGAGGGCATTCACAAAGAATT 58.843 40.909 0.00 0.00 44.48 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.