Multiple sequence alignment - TraesCS7B01G240500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G240500 chr7B 100.000 3204 0 0 1 3204 447479162 447475959 0.000000e+00 5917.0
1 TraesCS7B01G240500 chr7B 93.059 706 30 6 1198 1890 386554248 386554947 0.000000e+00 1014.0
2 TraesCS7B01G240500 chr7B 92.635 706 33 6 1200 1890 447219854 447219153 0.000000e+00 998.0
3 TraesCS7B01G240500 chr7B 91.667 552 45 1 1 551 447511980 447511429 0.000000e+00 763.0
4 TraesCS7B01G240500 chr7B 83.333 174 17 8 2444 2607 386555481 386555652 1.990000e-32 150.0
5 TraesCS7B01G240500 chr7B 83.237 173 19 7 2444 2607 447218587 447218416 1.990000e-32 150.0
6 TraesCS7B01G240500 chr7B 86.719 128 17 0 2762 2889 447218399 447218272 3.330000e-30 143.0
7 TraesCS7B01G240500 chr7B 93.651 63 4 0 2762 2824 386555669 386555731 9.460000e-16 95.3
8 TraesCS7B01G240500 chr7B 83.495 103 12 2 2249 2351 447218742 447218645 1.220000e-14 91.6
9 TraesCS7B01G240500 chr7B 83.673 98 12 2 2249 2345 386555344 386555438 4.400000e-14 89.8
10 TraesCS7B01G240500 chr7A 83.242 1462 135 63 1196 2584 502621812 502623236 0.000000e+00 1242.0
11 TraesCS7B01G240500 chr7A 88.983 826 59 16 1088 1891 502359934 502360749 0.000000e+00 992.0
12 TraesCS7B01G240500 chr7A 87.627 590 32 11 2356 2933 502381431 502381991 0.000000e+00 647.0
13 TraesCS7B01G240500 chr7A 91.281 367 18 5 2479 2842 665376354 665376709 3.710000e-134 488.0
14 TraesCS7B01G240500 chr7A 85.106 423 30 11 2618 3021 502623320 502623728 4.980000e-108 401.0
15 TraesCS7B01G240500 chr7A 91.986 287 20 2 1934 2219 502360848 502361132 1.790000e-107 399.0
16 TraesCS7B01G240500 chr7A 89.447 199 15 5 3010 3204 192846935 192846739 2.470000e-61 246.0
17 TraesCS7B01G240500 chr7A 94.074 135 4 2 2226 2360 502362117 502362247 5.420000e-48 202.0
18 TraesCS7B01G240500 chr7A 83.251 203 11 9 2177 2374 665286863 665287047 7.110000e-37 165.0
19 TraesCS7B01G240500 chr7A 84.685 111 13 4 2823 2929 665376721 665376831 1.220000e-19 108.0
20 TraesCS7B01G240500 chr7A 87.013 77 3 6 567 639 674912471 674912544 2.650000e-11 80.5
21 TraesCS7B01G240500 chr7D 92.099 886 48 10 1004 1889 430097332 430096469 0.000000e+00 1229.0
22 TraesCS7B01G240500 chr7D 91.231 707 40 6 1202 1890 429711400 429710698 0.000000e+00 942.0
23 TraesCS7B01G240500 chr7D 92.791 430 21 4 2601 3021 430095592 430095164 5.870000e-172 614.0
24 TraesCS7B01G240500 chr7D 88.406 138 15 1 2762 2898 429709971 429709834 7.110000e-37 165.0
25 TraesCS7B01G240500 chr7D 84.483 174 15 8 2444 2607 429710159 429709988 9.200000e-36 161.0
26 TraesCS7B01G240500 chr7D 92.929 99 7 0 2492 2590 430095969 430095871 9.260000e-31 145.0
27 TraesCS7B01G240500 chr7D 88.350 103 9 1 2249 2351 429710312 429710213 1.560000e-23 121.0
28 TraesCS7B01G240500 chr7D 88.525 61 5 2 685 743 430100114 430100054 4.430000e-09 73.1
29 TraesCS7B01G240500 chr1B 88.989 554 48 8 1 552 295835445 295835987 0.000000e+00 673.0
30 TraesCS7B01G240500 chr1B 87.299 559 50 10 2 551 275859212 275859758 1.260000e-173 619.0
31 TraesCS7B01G240500 chr1B 87.004 554 63 4 1296 1843 62527926 62528476 1.630000e-172 616.0
32 TraesCS7B01G240500 chr1B 86.885 549 59 8 5 551 295827779 295828316 1.270000e-168 603.0
33 TraesCS7B01G240500 chr1B 84.973 559 69 9 1 551 356730178 356729627 1.300000e-153 553.0
34 TraesCS7B01G240500 chr1B 87.895 190 21 2 3017 3204 25112547 25112358 4.160000e-54 222.0
35 TraesCS7B01G240500 chr1B 93.258 89 5 1 552 639 606709051 606709139 2.590000e-26 130.0
36 TraesCS7B01G240500 chr1B 87.500 80 8 2 560 638 372170979 372170901 1.220000e-14 91.6
37 TraesCS7B01G240500 chr1D 85.406 603 63 18 1296 1880 42344580 42345175 1.270000e-168 603.0
38 TraesCS7B01G240500 chr1D 98.000 50 1 0 589 638 377726104 377726055 1.580000e-13 87.9
39 TraesCS7B01G240500 chr1D 94.643 56 1 1 587 640 397552365 397552420 5.690000e-13 86.1
40 TraesCS7B01G240500 chr4B 85.637 557 58 17 6 551 492762278 492762823 1.670000e-157 566.0
41 TraesCS7B01G240500 chr3B 85.072 556 71 7 1 551 82789438 82788890 1.000000e-154 556.0
42 TraesCS7B01G240500 chr3B 91.935 186 11 3 3021 3202 30771040 30770855 1.140000e-64 257.0
43 TraesCS7B01G240500 chr6B 84.973 559 65 13 1 551 332061911 332061364 1.680000e-152 549.0
44 TraesCS7B01G240500 chr6B 90.789 76 5 2 566 639 704597073 704596998 2.030000e-17 100.0
45 TraesCS7B01G240500 chr6B 94.643 56 1 1 587 640 145723985 145724040 5.690000e-13 86.1
46 TraesCS7B01G240500 chr5B 85.045 555 66 11 1 551 223718294 223717753 1.680000e-152 549.0
47 TraesCS7B01G240500 chr1A 82.784 546 80 11 1314 1849 42279933 42279392 2.890000e-130 475.0
48 TraesCS7B01G240500 chr1A 87.368 190 21 3 3017 3204 19047365 19047177 6.960000e-52 215.0
49 TraesCS7B01G240500 chr5A 92.632 190 12 1 3017 3204 426572105 426572294 4.070000e-69 272.0
50 TraesCS7B01G240500 chr5A 89.011 182 16 2 3018 3195 616354830 616355011 4.160000e-54 222.0
51 TraesCS7B01G240500 chrUn 91.398 186 14 2 3021 3204 50947608 50947423 1.480000e-63 254.0
52 TraesCS7B01G240500 chrUn 94.545 55 1 1 587 639 142569745 142569799 2.050000e-12 84.2
53 TraesCS7B01G240500 chrUn 94.643 56 0 2 587 640 233272423 233272477 2.050000e-12 84.2
54 TraesCS7B01G240500 chr2A 87.565 193 20 4 3014 3204 488003427 488003617 1.500000e-53 220.0
55 TraesCS7B01G240500 chr2B 87.568 185 21 2 3021 3204 31581554 31581371 2.500000e-51 213.0
56 TraesCS7B01G240500 chr2B 94.643 56 2 1 589 643 177484597 177484542 5.690000e-13 86.1
57 TraesCS7B01G240500 chr5D 96.296 54 0 2 589 640 523587471 523587418 1.580000e-13 87.9
58 TraesCS7B01G240500 chr3A 93.333 60 3 1 589 647 343300286 343300345 1.580000e-13 87.9
59 TraesCS7B01G240500 chr6D 94.643 56 1 1 587 640 95176488 95176433 5.690000e-13 86.1
60 TraesCS7B01G240500 chr6D 96.226 53 1 1 589 640 210121302 210121250 5.690000e-13 86.1
61 TraesCS7B01G240500 chr4D 94.643 56 1 1 587 640 127494747 127494692 5.690000e-13 86.1
62 TraesCS7B01G240500 chr3D 91.803 61 3 2 589 647 114277191 114277131 2.050000e-12 84.2
63 TraesCS7B01G240500 chr3D 87.179 78 2 6 567 639 594268804 594268730 7.370000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G240500 chr7B 447475959 447479162 3203 True 5917.000 5917 100.0000 1 3204 1 chr7B.!!$R1 3203
1 TraesCS7B01G240500 chr7B 447511429 447511980 551 True 763.000 763 91.6670 1 551 1 chr7B.!!$R2 550
2 TraesCS7B01G240500 chr7B 447218272 447219854 1582 True 345.650 998 86.5215 1200 2889 4 chr7B.!!$R3 1689
3 TraesCS7B01G240500 chr7B 386554248 386555731 1483 False 337.275 1014 88.4290 1198 2824 4 chr7B.!!$F1 1626
4 TraesCS7B01G240500 chr7A 502621812 502623728 1916 False 821.500 1242 84.1740 1196 3021 2 chr7A.!!$F5 1825
5 TraesCS7B01G240500 chr7A 502381431 502381991 560 False 647.000 647 87.6270 2356 2933 1 chr7A.!!$F1 577
6 TraesCS7B01G240500 chr7A 502359934 502362247 2313 False 531.000 992 91.6810 1088 2360 3 chr7A.!!$F4 1272
7 TraesCS7B01G240500 chr7D 430095164 430100114 4950 True 515.275 1229 91.5860 685 3021 4 chr7D.!!$R2 2336
8 TraesCS7B01G240500 chr7D 429709834 429711400 1566 True 347.250 942 88.1175 1202 2898 4 chr7D.!!$R1 1696
9 TraesCS7B01G240500 chr1B 295835445 295835987 542 False 673.000 673 88.9890 1 552 1 chr1B.!!$F4 551
10 TraesCS7B01G240500 chr1B 275859212 275859758 546 False 619.000 619 87.2990 2 551 1 chr1B.!!$F2 549
11 TraesCS7B01G240500 chr1B 62527926 62528476 550 False 616.000 616 87.0040 1296 1843 1 chr1B.!!$F1 547
12 TraesCS7B01G240500 chr1B 295827779 295828316 537 False 603.000 603 86.8850 5 551 1 chr1B.!!$F3 546
13 TraesCS7B01G240500 chr1B 356729627 356730178 551 True 553.000 553 84.9730 1 551 1 chr1B.!!$R2 550
14 TraesCS7B01G240500 chr1D 42344580 42345175 595 False 603.000 603 85.4060 1296 1880 1 chr1D.!!$F1 584
15 TraesCS7B01G240500 chr4B 492762278 492762823 545 False 566.000 566 85.6370 6 551 1 chr4B.!!$F1 545
16 TraesCS7B01G240500 chr3B 82788890 82789438 548 True 556.000 556 85.0720 1 551 1 chr3B.!!$R2 550
17 TraesCS7B01G240500 chr6B 332061364 332061911 547 True 549.000 549 84.9730 1 551 1 chr6B.!!$R1 550
18 TraesCS7B01G240500 chr5B 223717753 223718294 541 True 549.000 549 85.0450 1 551 1 chr5B.!!$R1 550
19 TraesCS7B01G240500 chr1A 42279392 42279933 541 True 475.000 475 82.7840 1314 1849 1 chr1A.!!$R2 535


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
987 1775 0.038709 GATCGAGCCGATGGAGGAAG 60.039 60.0 13.68 0.0 47.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2814 6794 1.434555 TTGTTTCGTCGCGATGGATT 58.565 45.0 26.94 0.0 35.23 3.01 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.093633 GTCAAAGGTTTTCTTATCGGTGCTAT 59.906 38.462 0.00 0.00 34.78 2.97
28 29 6.315393 TCAAAGGTTTTCTTATCGGTGCTATC 59.685 38.462 0.00 0.00 34.78 2.08
68 70 1.078528 AGGACGGAGGTCACCATGA 59.921 57.895 0.00 0.00 45.28 3.07
96 98 2.983030 GGCGTCACCACCAATGCA 60.983 61.111 0.00 0.00 38.86 3.96
141 143 3.887352 AGTCAGGATAGCTTGTACTCGA 58.113 45.455 0.00 0.00 0.00 4.04
159 161 4.009675 CTCGATGTCCCCTTTCAAAATGA 58.990 43.478 0.00 0.00 0.00 2.57
174 176 2.879103 AATGACCGTTGTTGGATCCT 57.121 45.000 14.23 0.00 0.00 3.24
187 189 1.147153 GATCCTTTCCCAGCTCCCG 59.853 63.158 0.00 0.00 0.00 5.14
208 210 4.392940 CGCTCAATATTTGGGAAGAGGAT 58.607 43.478 0.00 0.00 30.85 3.24
293 309 1.102154 CCACCAAGCACAAGAACACA 58.898 50.000 0.00 0.00 0.00 3.72
516 536 2.738521 CGCACCCCAGTGTTCGAG 60.739 66.667 0.00 0.00 46.35 4.04
524 544 1.275291 CCCAGTGTTCGAGCCTTAAGA 59.725 52.381 3.36 0.00 0.00 2.10
552 572 1.038280 GGAACCCGATATCCGACACT 58.962 55.000 0.00 0.00 41.76 3.55
553 573 2.233271 GGAACCCGATATCCGACACTA 58.767 52.381 0.00 0.00 41.76 2.74
554 574 2.228343 GGAACCCGATATCCGACACTAG 59.772 54.545 0.00 0.00 41.76 2.57
555 575 2.653234 ACCCGATATCCGACACTAGT 57.347 50.000 0.00 0.00 41.76 2.57
556 576 2.941480 ACCCGATATCCGACACTAGTT 58.059 47.619 0.00 0.00 41.76 2.24
557 577 2.883386 ACCCGATATCCGACACTAGTTC 59.117 50.000 0.00 0.00 41.76 3.01
558 578 3.147629 CCCGATATCCGACACTAGTTCT 58.852 50.000 0.00 0.00 41.76 3.01
559 579 3.568853 CCCGATATCCGACACTAGTTCTT 59.431 47.826 0.00 0.00 41.76 2.52
560 580 4.037684 CCCGATATCCGACACTAGTTCTTT 59.962 45.833 0.00 0.00 41.76 2.52
561 581 5.240183 CCCGATATCCGACACTAGTTCTTTA 59.760 44.000 0.00 0.00 41.76 1.85
562 582 6.238842 CCCGATATCCGACACTAGTTCTTTAA 60.239 42.308 0.00 0.00 41.76 1.52
563 583 6.856938 CCGATATCCGACACTAGTTCTTTAAG 59.143 42.308 0.00 0.00 41.76 1.85
564 584 7.416022 CGATATCCGACACTAGTTCTTTAAGT 58.584 38.462 0.00 0.00 41.76 2.24
565 585 7.914346 CGATATCCGACACTAGTTCTTTAAGTT 59.086 37.037 0.00 0.00 41.76 2.66
566 586 9.583765 GATATCCGACACTAGTTCTTTAAGTTT 57.416 33.333 0.00 0.00 0.00 2.66
567 587 7.653767 ATCCGACACTAGTTCTTTAAGTTTG 57.346 36.000 0.00 0.00 0.00 2.93
568 588 6.808829 TCCGACACTAGTTCTTTAAGTTTGA 58.191 36.000 0.00 0.00 0.00 2.69
569 589 7.267128 TCCGACACTAGTTCTTTAAGTTTGAA 58.733 34.615 0.00 0.00 0.00 2.69
570 590 7.929785 TCCGACACTAGTTCTTTAAGTTTGAAT 59.070 33.333 0.00 0.00 0.00 2.57
571 591 8.557029 CCGACACTAGTTCTTTAAGTTTGAATT 58.443 33.333 0.00 0.00 0.00 2.17
572 592 9.582223 CGACACTAGTTCTTTAAGTTTGAATTC 57.418 33.333 0.00 0.00 0.00 2.17
587 607 7.588512 AGTTTGAATTCTGTGAATCTACAAGC 58.411 34.615 7.05 0.00 0.00 4.01
588 608 7.446625 AGTTTGAATTCTGTGAATCTACAAGCT 59.553 33.333 7.05 12.67 0.00 3.74
589 609 6.732531 TGAATTCTGTGAATCTACAAGCTG 57.267 37.500 7.05 0.00 0.00 4.24
590 610 5.645067 TGAATTCTGTGAATCTACAAGCTGG 59.355 40.000 7.05 0.00 0.00 4.85
591 611 4.623932 TTCTGTGAATCTACAAGCTGGT 57.376 40.909 0.00 0.00 0.00 4.00
592 612 4.623932 TCTGTGAATCTACAAGCTGGTT 57.376 40.909 0.00 0.00 0.00 3.67
593 613 4.973168 TCTGTGAATCTACAAGCTGGTTT 58.027 39.130 0.00 0.00 0.00 3.27
594 614 5.376625 TCTGTGAATCTACAAGCTGGTTTT 58.623 37.500 0.00 0.00 0.00 2.43
595 615 5.470098 TCTGTGAATCTACAAGCTGGTTTTC 59.530 40.000 0.00 1.76 0.00 2.29
596 616 5.129634 TGTGAATCTACAAGCTGGTTTTCA 58.870 37.500 0.00 4.51 0.00 2.69
597 617 5.239306 TGTGAATCTACAAGCTGGTTTTCAG 59.761 40.000 0.00 0.00 46.03 3.02
598 618 5.239525 GTGAATCTACAAGCTGGTTTTCAGT 59.760 40.000 0.00 0.00 45.08 3.41
599 619 6.426937 GTGAATCTACAAGCTGGTTTTCAGTA 59.573 38.462 0.00 0.00 45.08 2.74
600 620 6.995686 TGAATCTACAAGCTGGTTTTCAGTAA 59.004 34.615 0.00 0.00 45.08 2.24
601 621 7.665559 TGAATCTACAAGCTGGTTTTCAGTAAT 59.334 33.333 0.00 0.00 45.08 1.89
602 622 6.801539 TCTACAAGCTGGTTTTCAGTAATG 57.198 37.500 0.00 0.00 45.08 1.90
603 623 6.530120 TCTACAAGCTGGTTTTCAGTAATGA 58.470 36.000 0.00 0.00 45.08 2.57
604 624 6.995686 TCTACAAGCTGGTTTTCAGTAATGAA 59.004 34.615 0.00 0.56 45.08 2.57
605 625 6.463995 ACAAGCTGGTTTTCAGTAATGAAA 57.536 33.333 13.98 13.98 45.08 2.69
606 626 6.872920 ACAAGCTGGTTTTCAGTAATGAAAA 58.127 32.000 23.18 23.18 45.08 2.29
607 627 7.500141 ACAAGCTGGTTTTCAGTAATGAAAAT 58.500 30.769 27.81 13.26 45.67 1.82
608 628 7.653311 ACAAGCTGGTTTTCAGTAATGAAAATC 59.347 33.333 27.81 27.28 45.67 2.17
614 634 8.748380 GGTTTTCAGTAATGAAAATCAGAAGG 57.252 34.615 27.92 0.00 45.67 3.46
615 635 7.814587 GGTTTTCAGTAATGAAAATCAGAAGGG 59.185 37.037 27.92 0.00 45.67 3.95
616 636 7.466746 TTTCAGTAATGAAAATCAGAAGGGG 57.533 36.000 15.48 0.00 35.17 4.79
617 637 6.387192 TCAGTAATGAAAATCAGAAGGGGA 57.613 37.500 0.00 0.00 0.00 4.81
618 638 6.789268 TCAGTAATGAAAATCAGAAGGGGAA 58.211 36.000 0.00 0.00 0.00 3.97
619 639 6.886459 TCAGTAATGAAAATCAGAAGGGGAAG 59.114 38.462 0.00 0.00 0.00 3.46
620 640 5.654209 AGTAATGAAAATCAGAAGGGGAAGC 59.346 40.000 0.00 0.00 0.00 3.86
621 641 2.807676 TGAAAATCAGAAGGGGAAGCC 58.192 47.619 0.00 0.00 0.00 4.35
622 642 2.103373 GAAAATCAGAAGGGGAAGCCC 58.897 52.381 0.00 0.00 44.51 5.19
623 643 1.387119 AAATCAGAAGGGGAAGCCCT 58.613 50.000 2.01 0.00 44.66 5.19
629 649 3.774144 AAGGGGAAGCCCTTCTTTG 57.226 52.632 2.68 0.00 46.11 2.77
630 650 1.158007 AAGGGGAAGCCCTTCTTTGA 58.842 50.000 2.68 0.00 46.11 2.69
631 651 1.158007 AGGGGAAGCCCTTCTTTGAA 58.842 50.000 7.85 0.00 44.66 2.69
632 652 1.503347 AGGGGAAGCCCTTCTTTGAAA 59.497 47.619 7.85 0.00 44.66 2.69
633 653 2.090775 AGGGGAAGCCCTTCTTTGAAAA 60.091 45.455 7.85 0.00 44.66 2.29
634 654 2.703536 GGGGAAGCCCTTCTTTGAAAAA 59.296 45.455 7.85 0.00 44.66 1.94
660 680 7.759489 AAACAAAGTTATGGCTAGTGATTCA 57.241 32.000 0.00 0.00 0.00 2.57
661 681 6.992063 ACAAAGTTATGGCTAGTGATTCAG 57.008 37.500 0.00 0.00 0.00 3.02
662 682 5.882557 ACAAAGTTATGGCTAGTGATTCAGG 59.117 40.000 0.00 0.00 0.00 3.86
663 683 5.957771 AAGTTATGGCTAGTGATTCAGGA 57.042 39.130 0.00 0.00 0.00 3.86
664 684 6.506538 AAGTTATGGCTAGTGATTCAGGAT 57.493 37.500 0.00 0.00 0.00 3.24
665 685 6.506538 AGTTATGGCTAGTGATTCAGGATT 57.493 37.500 0.00 0.00 0.00 3.01
666 686 6.529220 AGTTATGGCTAGTGATTCAGGATTC 58.471 40.000 0.00 0.00 0.00 2.52
667 687 3.845781 TGGCTAGTGATTCAGGATTCC 57.154 47.619 0.00 0.00 0.00 3.01
668 688 3.114606 TGGCTAGTGATTCAGGATTCCA 58.885 45.455 5.29 0.00 0.00 3.53
669 689 3.523157 TGGCTAGTGATTCAGGATTCCAA 59.477 43.478 5.29 0.00 0.00 3.53
670 690 4.166725 TGGCTAGTGATTCAGGATTCCAAT 59.833 41.667 5.29 0.00 0.00 3.16
671 691 4.518211 GGCTAGTGATTCAGGATTCCAATG 59.482 45.833 5.29 0.00 0.00 2.82
672 692 5.128919 GCTAGTGATTCAGGATTCCAATGT 58.871 41.667 5.29 0.00 0.00 2.71
673 693 5.591877 GCTAGTGATTCAGGATTCCAATGTT 59.408 40.000 5.29 0.00 0.00 2.71
674 694 5.909621 AGTGATTCAGGATTCCAATGTTG 57.090 39.130 5.29 0.00 0.00 3.33
675 695 4.159135 AGTGATTCAGGATTCCAATGTTGC 59.841 41.667 5.29 0.00 0.00 4.17
676 696 4.082081 GTGATTCAGGATTCCAATGTTGCA 60.082 41.667 5.29 0.00 0.00 4.08
677 697 4.712829 TGATTCAGGATTCCAATGTTGCAT 59.287 37.500 5.29 0.00 0.00 3.96
678 698 4.459390 TTCAGGATTCCAATGTTGCATG 57.541 40.909 5.29 0.00 0.00 4.06
679 699 2.166870 TCAGGATTCCAATGTTGCATGC 59.833 45.455 11.82 11.82 0.00 4.06
680 700 1.135527 AGGATTCCAATGTTGCATGCG 59.864 47.619 14.09 0.00 0.00 4.73
681 701 1.563111 GATTCCAATGTTGCATGCGG 58.437 50.000 14.09 6.97 0.00 5.69
682 702 0.460635 ATTCCAATGTTGCATGCGGC 60.461 50.000 14.09 8.79 45.13 6.53
694 714 0.654472 CATGCGGCGTTATTTCGAGC 60.654 55.000 9.37 0.00 36.87 5.03
696 716 2.171725 GCGGCGTTATTTCGAGCCT 61.172 57.895 9.37 0.00 46.85 4.58
729 750 1.001293 TGTTTTGCTGCAACCACACAA 59.999 42.857 15.72 2.52 0.00 3.33
730 751 1.660104 GTTTTGCTGCAACCACACAAG 59.340 47.619 15.72 0.00 0.00 3.16
753 1510 2.092592 GGGGGAAATGGTACGATGACTT 60.093 50.000 0.00 0.00 0.00 3.01
772 1529 1.672356 GGAGTGTCCGCTGCAATGT 60.672 57.895 0.00 0.00 0.00 2.71
808 1565 5.182487 TGCGATTATCTTTAGTGCTCCAAA 58.818 37.500 0.00 0.00 0.00 3.28
809 1566 5.294306 TGCGATTATCTTTAGTGCTCCAAAG 59.706 40.000 0.92 0.92 33.86 2.77
810 1567 5.294552 GCGATTATCTTTAGTGCTCCAAAGT 59.705 40.000 6.59 0.00 34.17 2.66
811 1568 6.709643 CGATTATCTTTAGTGCTCCAAAGTG 58.290 40.000 6.59 0.00 34.17 3.16
813 1570 7.148407 CGATTATCTTTAGTGCTCCAAAGTGTT 60.148 37.037 6.59 0.00 34.17 3.32
887 1645 4.285851 GATCGGATTGATCCCGCC 57.714 61.111 4.49 0.00 46.55 6.13
891 1679 3.556306 GGATTGATCCCGCCCCGA 61.556 66.667 0.00 0.00 41.20 5.14
928 1716 3.620785 CCTAGCCCAGCCGCCTAG 61.621 72.222 0.00 0.00 0.00 3.02
929 1717 3.620785 CTAGCCCAGCCGCCTAGG 61.621 72.222 3.67 3.67 44.97 3.02
963 1751 4.357947 ACCGCACTCACGCACGAT 62.358 61.111 0.00 0.00 0.00 3.73
964 1752 3.112075 CCGCACTCACGCACGATT 61.112 61.111 0.00 0.00 0.00 3.34
965 1753 2.391821 CGCACTCACGCACGATTC 59.608 61.111 0.00 0.00 0.00 2.52
967 1755 1.130613 GCACTCACGCACGATTCAC 59.869 57.895 0.00 0.00 0.00 3.18
969 1757 1.001745 CACTCACGCACGATTCACGA 61.002 55.000 0.00 0.00 45.77 4.35
970 1758 0.109272 ACTCACGCACGATTCACGAT 60.109 50.000 0.00 0.00 45.77 3.73
981 1769 0.319040 ATTCACGATCGAGCCGATGG 60.319 55.000 24.34 14.20 47.00 3.51
982 1770 1.381165 TTCACGATCGAGCCGATGGA 61.381 55.000 24.34 0.00 47.00 3.41
983 1771 1.371022 CACGATCGAGCCGATGGAG 60.371 63.158 24.34 12.20 47.00 3.86
984 1772 2.256764 CGATCGAGCCGATGGAGG 59.743 66.667 10.26 0.00 47.00 4.30
985 1773 2.261586 CGATCGAGCCGATGGAGGA 61.262 63.158 10.26 0.00 47.00 3.71
986 1774 1.796190 CGATCGAGCCGATGGAGGAA 61.796 60.000 10.26 0.00 47.00 3.36
987 1775 0.038709 GATCGAGCCGATGGAGGAAG 60.039 60.000 13.68 0.00 47.00 3.46
988 1776 2.093537 ATCGAGCCGATGGAGGAAGC 62.094 60.000 8.94 0.00 45.24 3.86
991 1779 2.203126 GCCGATGGAGGAAGCCAG 60.203 66.667 0.00 0.00 42.15 4.85
992 1780 2.735772 GCCGATGGAGGAAGCCAGA 61.736 63.158 0.00 0.00 42.15 3.86
994 1782 1.333636 CCGATGGAGGAAGCCAGAGT 61.334 60.000 0.00 0.00 42.15 3.24
995 1783 0.179089 CGATGGAGGAAGCCAGAGTG 60.179 60.000 0.00 0.00 42.15 3.51
997 1785 2.125350 GGAGGAAGCCAGAGTGCG 60.125 66.667 0.00 0.00 36.02 5.34
998 1786 2.659610 GAGGAAGCCAGAGTGCGT 59.340 61.111 0.00 0.00 36.02 5.24
999 1787 1.004440 GAGGAAGCCAGAGTGCGTT 60.004 57.895 0.00 0.00 36.02 4.84
1000 1788 1.294659 GAGGAAGCCAGAGTGCGTTG 61.295 60.000 0.00 0.00 36.02 4.10
1001 1789 2.558313 GAAGCCAGAGTGCGTTGC 59.442 61.111 0.00 0.00 36.02 4.17
1002 1790 2.203195 AAGCCAGAGTGCGTTGCA 60.203 55.556 0.00 0.00 35.60 4.08
1024 3545 9.571816 TTGCATTTAAGGAAATTTTCTTCCAAT 57.428 25.926 15.18 11.72 46.38 3.16
1028 3549 5.405935 AAGGAAATTTTCTTCCAATCCGG 57.594 39.130 5.86 0.00 46.38 5.14
1031 3552 4.142160 GGAAATTTTCTTCCAATCCGGGAG 60.142 45.833 0.00 0.00 43.84 4.30
1032 3553 3.739401 ATTTTCTTCCAATCCGGGAGT 57.261 42.857 0.00 0.00 41.93 3.85
1074 3595 9.726438 TTATTCTTCTCCTTCCTTCTTTGTTAG 57.274 33.333 0.00 0.00 0.00 2.34
1075 3596 6.749036 TCTTCTCCTTCCTTCTTTGTTAGT 57.251 37.500 0.00 0.00 0.00 2.24
1206 3751 3.964031 AGAGAGGAGAGAGAGAGAGAGAC 59.036 52.174 0.00 0.00 0.00 3.36
1476 4031 1.934956 CGCCATCGTCGTCTTCTCG 60.935 63.158 0.00 0.00 0.00 4.04
1716 4292 3.322466 CGGTTCAGGTGGGAGGCT 61.322 66.667 0.00 0.00 0.00 4.58
1870 4454 2.750948 GAGCTTCGGTTAATCGCCATA 58.249 47.619 2.43 0.00 0.00 2.74
1878 4505 4.509970 TCGGTTAATCGCCATATGTTCTTG 59.490 41.667 2.43 0.00 0.00 3.02
1881 4508 5.277828 GGTTAATCGCCATATGTTCTTGGAC 60.278 44.000 1.24 0.00 34.81 4.02
1916 4543 5.238583 AGTTGCCTTTTGCTAGTACTGTAG 58.761 41.667 5.39 0.00 42.00 2.74
1917 4544 4.884668 TGCCTTTTGCTAGTACTGTAGT 57.115 40.909 5.39 0.22 42.00 2.73
1919 4546 5.717119 TGCCTTTTGCTAGTACTGTAGTAC 58.283 41.667 13.03 13.03 44.76 2.73
1932 4559 5.893897 ACTGTAGTACTGTGTAGTAAGGC 57.106 43.478 11.61 0.00 40.89 4.35
2078 4762 3.325870 TGGATCAACTCGATGAACACAC 58.674 45.455 0.00 0.00 33.17 3.82
2102 4786 6.475402 ACGATTTGATGCCGAATTAATTTTCC 59.525 34.615 1.43 0.00 0.00 3.13
2122 4806 3.517901 TCCATGAAGTAAGACAATCCGGT 59.482 43.478 0.00 0.00 0.00 5.28
2130 4814 4.999311 AGTAAGACAATCCGGTACCAAAAC 59.001 41.667 13.54 0.00 0.00 2.43
2187 4871 1.723542 CAAGACAAGCAGCAACGCG 60.724 57.895 3.53 3.53 36.85 6.01
2267 5929 7.124599 TGAAACATAATGGATCTTTGGCTTCAT 59.875 33.333 0.00 0.00 0.00 2.57
2268 5930 6.645790 ACATAATGGATCTTTGGCTTCATC 57.354 37.500 0.00 0.00 0.00 2.92
2269 5931 6.131264 ACATAATGGATCTTTGGCTTCATCA 58.869 36.000 0.00 0.00 0.00 3.07
2270 5932 6.264744 ACATAATGGATCTTTGGCTTCATCAG 59.735 38.462 0.00 0.00 0.00 2.90
2365 6039 2.372264 TGATTGGCTTCATTCAGGAGC 58.628 47.619 0.00 0.00 0.00 4.70
2423 6097 0.679505 ACGTTGAGTGCCTTCTGCTA 59.320 50.000 0.00 0.00 42.00 3.49
2433 6107 1.205893 GCCTTCTGCTACTACACAGCT 59.794 52.381 0.00 0.00 39.83 4.24
2476 6163 4.521146 CATTGGACAGAAGCTCCAGTTAT 58.479 43.478 0.00 0.00 39.06 1.89
2477 6164 5.674525 CATTGGACAGAAGCTCCAGTTATA 58.325 41.667 0.00 0.00 39.06 0.98
2478 6165 5.957771 TTGGACAGAAGCTCCAGTTATAT 57.042 39.130 0.00 0.00 39.06 0.86
2549 6249 4.346127 AGTGCAGATATCAGGCAATAGTGA 59.654 41.667 19.67 0.00 39.57 3.41
2585 6285 4.033587 GGCATGCATTCAGTTAATTTGCAG 59.966 41.667 21.36 0.09 32.01 4.41
2590 6290 6.389091 TGCATTCAGTTAATTTGCAGGTAAG 58.611 36.000 0.00 0.00 0.00 2.34
2592 6292 7.090173 GCATTCAGTTAATTTGCAGGTAAGAA 58.910 34.615 0.00 0.00 0.00 2.52
2593 6293 7.761249 GCATTCAGTTAATTTGCAGGTAAGAAT 59.239 33.333 0.00 0.00 0.00 2.40
2597 6297 9.290988 TCAGTTAATTTGCAGGTAAGAATAACA 57.709 29.630 0.00 0.00 0.00 2.41
2669 6648 1.203001 TGAAACTCTCCCCGCCAAAAT 60.203 47.619 0.00 0.00 0.00 1.82
2670 6649 2.040545 TGAAACTCTCCCCGCCAAAATA 59.959 45.455 0.00 0.00 0.00 1.40
2671 6650 2.891191 AACTCTCCCCGCCAAAATAA 57.109 45.000 0.00 0.00 0.00 1.40
2672 6651 2.891191 ACTCTCCCCGCCAAAATAAA 57.109 45.000 0.00 0.00 0.00 1.40
2678 6657 6.382859 ACTCTCCCCGCCAAAATAAATAAATT 59.617 34.615 0.00 0.00 0.00 1.82
2734 6714 3.559238 AATATTCCGATGCGAATTGGC 57.441 42.857 4.50 5.36 34.35 4.52
2814 6794 3.218470 GGCAGCAACCAGTGTGCA 61.218 61.111 8.29 0.00 36.53 4.57
2838 6828 2.570169 CATCGCGACGAAACAAATGTT 58.430 42.857 12.93 0.00 39.99 2.71
2884 6877 5.372547 ACAAAAGAAAGGAGAATAACGGC 57.627 39.130 0.00 0.00 0.00 5.68
2910 6911 4.743348 GCAGGAAGAATTTTGGCCTTTTGA 60.743 41.667 3.32 0.00 0.00 2.69
2929 6930 2.224159 GGAGACTTGGGGCAGGTGA 61.224 63.158 0.00 0.00 0.00 4.02
2953 6954 9.796120 TGATTAACTAAAACAAACTGGTTCTTG 57.204 29.630 0.00 0.00 0.00 3.02
2954 6955 8.642908 ATTAACTAAAACAAACTGGTTCTTGC 57.357 30.769 0.00 0.00 0.00 4.01
2955 6956 5.006153 ACTAAAACAAACTGGTTCTTGCC 57.994 39.130 0.00 0.00 0.00 4.52
3021 7028 3.613910 GCGGCACTTCACAAATGGTTATT 60.614 43.478 0.00 0.00 0.00 1.40
3022 7029 4.555262 CGGCACTTCACAAATGGTTATTT 58.445 39.130 0.00 0.00 36.97 1.40
3023 7030 4.987912 CGGCACTTCACAAATGGTTATTTT 59.012 37.500 0.00 0.00 34.34 1.82
3024 7031 5.465056 CGGCACTTCACAAATGGTTATTTTT 59.535 36.000 0.00 0.00 34.34 1.94
3025 7032 6.346518 CGGCACTTCACAAATGGTTATTTTTC 60.347 38.462 0.00 0.00 34.34 2.29
3026 7033 6.346518 GGCACTTCACAAATGGTTATTTTTCG 60.347 38.462 0.00 0.00 34.34 3.46
3027 7034 6.419413 GCACTTCACAAATGGTTATTTTTCGA 59.581 34.615 0.00 0.00 34.34 3.71
3028 7035 7.566868 GCACTTCACAAATGGTTATTTTTCGAC 60.567 37.037 0.00 0.00 34.34 4.20
3029 7036 7.433719 CACTTCACAAATGGTTATTTTTCGACA 59.566 33.333 0.00 0.00 34.34 4.35
3030 7037 7.976734 ACTTCACAAATGGTTATTTTTCGACAA 59.023 29.630 0.00 0.00 34.34 3.18
3031 7038 8.703604 TTCACAAATGGTTATTTTTCGACAAA 57.296 26.923 0.00 0.00 34.34 2.83
3032 7039 8.346476 TCACAAATGGTTATTTTTCGACAAAG 57.654 30.769 2.86 0.00 34.34 2.77
3033 7040 7.436673 TCACAAATGGTTATTTTTCGACAAAGG 59.563 33.333 2.86 0.00 34.34 3.11
3034 7041 6.704050 ACAAATGGTTATTTTTCGACAAAGGG 59.296 34.615 2.86 0.00 34.34 3.95
3035 7042 6.413783 AATGGTTATTTTTCGACAAAGGGT 57.586 33.333 2.86 0.00 0.00 4.34
3036 7043 5.189659 TGGTTATTTTTCGACAAAGGGTG 57.810 39.130 2.86 0.00 0.00 4.61
3037 7044 4.038162 TGGTTATTTTTCGACAAAGGGTGG 59.962 41.667 2.86 0.00 0.00 4.61
3038 7045 4.278919 GGTTATTTTTCGACAAAGGGTGGA 59.721 41.667 2.86 0.00 31.87 4.02
3039 7046 5.221283 GGTTATTTTTCGACAAAGGGTGGAA 60.221 40.000 2.86 0.00 41.68 3.53
3040 7047 6.452242 GTTATTTTTCGACAAAGGGTGGAAT 58.548 36.000 2.86 0.00 42.68 3.01
3041 7048 5.545063 ATTTTTCGACAAAGGGTGGAATT 57.455 34.783 2.86 0.00 42.68 2.17
3042 7049 5.346181 TTTTTCGACAAAGGGTGGAATTT 57.654 34.783 0.00 0.00 42.68 1.82
3043 7050 6.466885 TTTTTCGACAAAGGGTGGAATTTA 57.533 33.333 0.00 0.00 42.68 1.40
3044 7051 6.658188 TTTTCGACAAAGGGTGGAATTTAT 57.342 33.333 0.00 0.00 42.68 1.40
3045 7052 6.658188 TTTCGACAAAGGGTGGAATTTATT 57.342 33.333 0.00 0.00 42.68 1.40
3046 7053 5.637006 TCGACAAAGGGTGGAATTTATTG 57.363 39.130 0.00 0.00 30.68 1.90
3047 7054 5.317808 TCGACAAAGGGTGGAATTTATTGA 58.682 37.500 0.00 0.00 30.68 2.57
3048 7055 5.182380 TCGACAAAGGGTGGAATTTATTGAC 59.818 40.000 0.00 0.00 30.68 3.18
3049 7056 5.183140 CGACAAAGGGTGGAATTTATTGACT 59.817 40.000 0.00 0.00 0.00 3.41
3050 7057 6.590234 ACAAAGGGTGGAATTTATTGACTC 57.410 37.500 0.00 0.00 0.00 3.36
3051 7058 6.074648 ACAAAGGGTGGAATTTATTGACTCA 58.925 36.000 0.00 0.00 0.00 3.41
3052 7059 6.553100 ACAAAGGGTGGAATTTATTGACTCAA 59.447 34.615 0.00 0.00 0.00 3.02
3053 7060 7.070571 ACAAAGGGTGGAATTTATTGACTCAAA 59.929 33.333 0.00 0.00 0.00 2.69
3054 7061 7.610580 AAGGGTGGAATTTATTGACTCAAAA 57.389 32.000 0.00 0.00 0.00 2.44
3055 7062 7.797121 AGGGTGGAATTTATTGACTCAAAAT 57.203 32.000 0.00 0.00 0.00 1.82
3056 7063 7.614494 AGGGTGGAATTTATTGACTCAAAATG 58.386 34.615 0.00 0.00 0.00 2.32
3057 7064 7.454380 AGGGTGGAATTTATTGACTCAAAATGA 59.546 33.333 0.00 0.00 0.00 2.57
3058 7065 8.093927 GGGTGGAATTTATTGACTCAAAATGAA 58.906 33.333 0.00 0.00 0.00 2.57
3059 7066 9.143631 GGTGGAATTTATTGACTCAAAATGAAG 57.856 33.333 0.00 0.00 0.00 3.02
3060 7067 8.650714 GTGGAATTTATTGACTCAAAATGAAGC 58.349 33.333 0.00 0.00 0.00 3.86
3061 7068 8.366401 TGGAATTTATTGACTCAAAATGAAGCA 58.634 29.630 0.00 0.00 0.00 3.91
3062 7069 9.374838 GGAATTTATTGACTCAAAATGAAGCAT 57.625 29.630 0.00 0.00 0.00 3.79
3064 7071 9.932207 AATTTATTGACTCAAAATGAAGCATCA 57.068 25.926 0.00 0.00 40.57 3.07
3065 7072 9.932207 ATTTATTGACTCAAAATGAAGCATCAA 57.068 25.926 0.00 0.00 39.49 2.57
3066 7073 8.975410 TTATTGACTCAAAATGAAGCATCAAG 57.025 30.769 0.00 0.00 39.49 3.02
3067 7074 6.638096 TTGACTCAAAATGAAGCATCAAGA 57.362 33.333 0.00 0.00 39.49 3.02
3068 7075 6.638096 TGACTCAAAATGAAGCATCAAGAA 57.362 33.333 0.00 0.00 39.49 2.52
3069 7076 6.675026 TGACTCAAAATGAAGCATCAAGAAG 58.325 36.000 0.00 0.00 39.49 2.85
3070 7077 6.487668 TGACTCAAAATGAAGCATCAAGAAGA 59.512 34.615 0.00 0.00 39.49 2.87
3071 7078 7.176165 TGACTCAAAATGAAGCATCAAGAAGAT 59.824 33.333 0.00 0.00 39.49 2.40
3072 7079 8.571461 ACTCAAAATGAAGCATCAAGAAGATA 57.429 30.769 0.00 0.00 39.49 1.98
3073 7080 8.457261 ACTCAAAATGAAGCATCAAGAAGATAC 58.543 33.333 0.00 0.00 39.49 2.24
3074 7081 8.339344 TCAAAATGAAGCATCAAGAAGATACA 57.661 30.769 0.00 0.00 39.49 2.29
3075 7082 8.963725 TCAAAATGAAGCATCAAGAAGATACAT 58.036 29.630 0.00 0.00 39.49 2.29
3079 7086 8.969260 ATGAAGCATCAAGAAGATACATAACA 57.031 30.769 0.00 0.00 39.49 2.41
3080 7087 8.201554 TGAAGCATCAAGAAGATACATAACAC 57.798 34.615 0.00 0.00 34.43 3.32
3081 7088 7.823799 TGAAGCATCAAGAAGATACATAACACA 59.176 33.333 0.00 0.00 34.43 3.72
3082 7089 8.565896 AAGCATCAAGAAGATACATAACACAA 57.434 30.769 0.00 0.00 34.43 3.33
3083 7090 8.743085 AGCATCAAGAAGATACATAACACAAT 57.257 30.769 0.00 0.00 34.43 2.71
3084 7091 9.836864 AGCATCAAGAAGATACATAACACAATA 57.163 29.630 0.00 0.00 34.43 1.90
3094 7101 8.726988 AGATACATAACACAATAAACACACACC 58.273 33.333 0.00 0.00 0.00 4.16
3095 7102 6.079424 ACATAACACAATAAACACACACCC 57.921 37.500 0.00 0.00 0.00 4.61
3096 7103 3.701532 AACACAATAAACACACACCCG 57.298 42.857 0.00 0.00 0.00 5.28
3097 7104 1.950909 ACACAATAAACACACACCCGG 59.049 47.619 0.00 0.00 0.00 5.73
3098 7105 0.955905 ACAATAAACACACACCCGGC 59.044 50.000 0.00 0.00 0.00 6.13
3099 7106 0.242555 CAATAAACACACACCCGGCC 59.757 55.000 0.00 0.00 0.00 6.13
3100 7107 0.111639 AATAAACACACACCCGGCCT 59.888 50.000 0.00 0.00 0.00 5.19
3101 7108 0.322187 ATAAACACACACCCGGCCTC 60.322 55.000 0.00 0.00 0.00 4.70
3102 7109 1.412453 TAAACACACACCCGGCCTCT 61.412 55.000 0.00 0.00 0.00 3.69
3103 7110 2.958578 AAACACACACCCGGCCTCTG 62.959 60.000 0.00 0.00 0.00 3.35
3106 7113 4.415150 CACACCCGGCCTCTGCAT 62.415 66.667 0.00 0.00 40.13 3.96
3107 7114 2.687200 ACACCCGGCCTCTGCATA 60.687 61.111 0.00 0.00 40.13 3.14
3108 7115 2.109799 CACCCGGCCTCTGCATAG 59.890 66.667 0.00 0.00 40.13 2.23
3109 7116 3.866582 ACCCGGCCTCTGCATAGC 61.867 66.667 0.00 0.00 40.13 2.97
3110 7117 3.554342 CCCGGCCTCTGCATAGCT 61.554 66.667 0.00 0.00 40.13 3.32
3111 7118 2.210013 CCCGGCCTCTGCATAGCTA 61.210 63.158 0.00 0.00 40.13 3.32
3112 7119 1.291588 CCGGCCTCTGCATAGCTAG 59.708 63.158 0.00 0.00 40.13 3.42
3113 7120 1.291588 CGGCCTCTGCATAGCTAGG 59.708 63.158 0.00 0.00 40.13 3.02
3114 7121 1.181741 CGGCCTCTGCATAGCTAGGA 61.182 60.000 10.11 0.00 40.13 2.94
3115 7122 1.274712 GGCCTCTGCATAGCTAGGAT 58.725 55.000 10.11 0.00 40.13 3.24
3116 7123 1.066286 GGCCTCTGCATAGCTAGGATG 60.066 57.143 10.11 0.00 40.13 3.51
3124 7131 2.141517 CATAGCTAGGATGCACACAGC 58.858 52.381 0.00 0.00 45.96 4.40
3131 7138 3.708195 GATGCACACAGCCAACATC 57.292 52.632 0.00 0.00 44.83 3.06
3132 7139 0.883153 GATGCACACAGCCAACATCA 59.117 50.000 0.00 0.00 44.83 3.07
3133 7140 1.475280 GATGCACACAGCCAACATCAT 59.525 47.619 0.00 0.00 44.83 2.45
3134 7141 1.330234 TGCACACAGCCAACATCATT 58.670 45.000 0.00 0.00 44.83 2.57
3135 7142 1.687660 TGCACACAGCCAACATCATTT 59.312 42.857 0.00 0.00 44.83 2.32
3136 7143 2.288334 TGCACACAGCCAACATCATTTC 60.288 45.455 0.00 0.00 44.83 2.17
3137 7144 2.288334 GCACACAGCCAACATCATTTCA 60.288 45.455 0.00 0.00 37.23 2.69
3138 7145 3.311106 CACACAGCCAACATCATTTCAC 58.689 45.455 0.00 0.00 0.00 3.18
3139 7146 2.957680 ACACAGCCAACATCATTTCACA 59.042 40.909 0.00 0.00 0.00 3.58
3140 7147 3.243501 ACACAGCCAACATCATTTCACAC 60.244 43.478 0.00 0.00 0.00 3.82
3141 7148 2.957680 ACAGCCAACATCATTTCACACA 59.042 40.909 0.00 0.00 0.00 3.72
3142 7149 3.243501 ACAGCCAACATCATTTCACACAC 60.244 43.478 0.00 0.00 0.00 3.82
3143 7150 2.030893 AGCCAACATCATTTCACACACG 60.031 45.455 0.00 0.00 0.00 4.49
3144 7151 2.318578 CCAACATCATTTCACACACGC 58.681 47.619 0.00 0.00 0.00 5.34
3145 7152 1.971284 CAACATCATTTCACACACGCG 59.029 47.619 3.53 3.53 0.00 6.01
3146 7153 1.507562 ACATCATTTCACACACGCGA 58.492 45.000 15.93 0.00 0.00 5.87
3147 7154 1.870402 ACATCATTTCACACACGCGAA 59.130 42.857 15.93 0.00 0.00 4.70
3148 7155 2.289274 ACATCATTTCACACACGCGAAA 59.711 40.909 15.93 1.02 35.70 3.46
3149 7156 3.242903 ACATCATTTCACACACGCGAAAA 60.243 39.130 15.93 3.61 34.95 2.29
3150 7157 3.406728 TCATTTCACACACGCGAAAAA 57.593 38.095 15.93 3.98 34.95 1.94
3151 7158 3.102276 TCATTTCACACACGCGAAAAAC 58.898 40.909 15.93 0.00 34.95 2.43
3152 7159 1.525596 TTTCACACACGCGAAAAACG 58.474 45.000 15.93 0.00 45.66 3.60
3161 7168 3.656045 CGAAAAACGCCGGCACCT 61.656 61.111 28.98 6.68 34.51 4.00
3162 7169 2.319096 CGAAAAACGCCGGCACCTA 61.319 57.895 28.98 0.00 34.51 3.08
3163 7170 1.500396 GAAAAACGCCGGCACCTAG 59.500 57.895 28.98 12.44 0.00 3.02
3164 7171 2.523184 GAAAAACGCCGGCACCTAGC 62.523 60.000 28.98 7.44 44.65 3.42
3179 7186 6.532365 GCACCTAGCAAAGTCATATAAGAC 57.468 41.667 0.00 0.00 44.79 3.01
3180 7187 5.467063 GCACCTAGCAAAGTCATATAAGACC 59.533 44.000 4.52 0.00 44.79 3.85
3181 7188 6.582636 CACCTAGCAAAGTCATATAAGACCA 58.417 40.000 4.52 0.00 39.34 4.02
3182 7189 7.047891 CACCTAGCAAAGTCATATAAGACCAA 58.952 38.462 4.52 0.00 39.34 3.67
3183 7190 7.552687 CACCTAGCAAAGTCATATAAGACCAAA 59.447 37.037 4.52 0.00 39.34 3.28
3184 7191 7.770897 ACCTAGCAAAGTCATATAAGACCAAAG 59.229 37.037 4.52 0.00 39.34 2.77
3185 7192 6.442513 AGCAAAGTCATATAAGACCAAAGC 57.557 37.500 4.52 4.82 39.34 3.51
3186 7193 6.183347 AGCAAAGTCATATAAGACCAAAGCT 58.817 36.000 4.52 6.76 39.34 3.74
3187 7194 7.338710 AGCAAAGTCATATAAGACCAAAGCTA 58.661 34.615 4.52 0.00 39.34 3.32
3188 7195 7.995488 AGCAAAGTCATATAAGACCAAAGCTAT 59.005 33.333 4.52 0.00 39.34 2.97
3189 7196 8.072567 GCAAAGTCATATAAGACCAAAGCTATG 58.927 37.037 4.52 0.00 39.34 2.23
3190 7197 9.113838 CAAAGTCATATAAGACCAAAGCTATGT 57.886 33.333 4.52 0.00 39.34 2.29
3191 7198 8.668510 AAGTCATATAAGACCAAAGCTATGTG 57.331 34.615 4.52 0.00 39.34 3.21
3192 7199 7.796054 AGTCATATAAGACCAAAGCTATGTGT 58.204 34.615 4.52 0.00 39.34 3.72
3193 7200 8.924303 AGTCATATAAGACCAAAGCTATGTGTA 58.076 33.333 4.52 0.00 39.34 2.90
3194 7201 9.197694 GTCATATAAGACCAAAGCTATGTGTAG 57.802 37.037 0.00 0.00 32.36 2.74
3195 7202 9.143155 TCATATAAGACCAAAGCTATGTGTAGA 57.857 33.333 0.00 0.00 0.00 2.59
3196 7203 9.197694 CATATAAGACCAAAGCTATGTGTAGAC 57.802 37.037 0.00 0.00 0.00 2.59
3197 7204 5.483685 AAGACCAAAGCTATGTGTAGACA 57.516 39.130 0.00 0.00 36.22 3.41
3198 7205 5.483685 AGACCAAAGCTATGTGTAGACAA 57.516 39.130 0.00 0.00 35.11 3.18
3199 7206 5.482908 AGACCAAAGCTATGTGTAGACAAG 58.517 41.667 0.00 0.00 35.11 3.16
3200 7207 4.579869 ACCAAAGCTATGTGTAGACAAGG 58.420 43.478 0.00 0.00 35.11 3.61
3201 7208 4.286032 ACCAAAGCTATGTGTAGACAAGGA 59.714 41.667 0.00 0.00 35.11 3.36
3202 7209 5.221843 ACCAAAGCTATGTGTAGACAAGGAA 60.222 40.000 0.00 0.00 35.11 3.36
3203 7210 5.705441 CCAAAGCTATGTGTAGACAAGGAAA 59.295 40.000 0.00 0.00 35.11 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.394729 AGCACCGATAAGAAAACCTTTGA 58.605 39.130 0.00 0.00 36.34 2.69
13 14 5.473846 CCTTAGTCTGATAGCACCGATAAGA 59.526 44.000 0.00 0.00 0.00 2.10
27 28 0.252239 TCCTGCTGGCCTTAGTCTGA 60.252 55.000 3.32 0.00 0.00 3.27
28 29 0.177604 CTCCTGCTGGCCTTAGTCTG 59.822 60.000 3.32 0.00 0.00 3.51
96 98 1.074775 TGGTCTTCGCCTGCCAAAT 59.925 52.632 0.00 0.00 0.00 2.32
141 143 2.825532 CGGTCATTTTGAAAGGGGACAT 59.174 45.455 7.59 0.00 0.00 3.06
187 189 5.380043 TGATCCTCTTCCCAAATATTGAGC 58.620 41.667 0.00 0.00 0.00 4.26
208 210 3.181395 AGCCCTATTTATAGAGGCCCTGA 60.181 47.826 18.00 0.00 42.61 3.86
306 322 5.741011 TGAACAGTACAAGGAAAGAACAGT 58.259 37.500 0.00 0.00 0.00 3.55
353 369 1.338107 CCTACTCCTGTGTGTGGTGA 58.662 55.000 0.00 0.00 0.00 4.02
389 408 3.394606 AGATTTATACAGGTTCGGGCCAT 59.605 43.478 4.39 0.00 0.00 4.40
516 536 1.530323 TCCGGCAAAACTCTTAAGGC 58.470 50.000 1.85 0.00 0.00 4.35
561 581 8.078596 GCTTGTAGATTCACAGAATTCAAACTT 58.921 33.333 8.44 0.00 0.00 2.66
562 582 7.446625 AGCTTGTAGATTCACAGAATTCAAACT 59.553 33.333 8.44 0.16 0.00 2.66
563 583 7.536622 CAGCTTGTAGATTCACAGAATTCAAAC 59.463 37.037 8.44 0.00 0.00 2.93
564 584 7.308770 CCAGCTTGTAGATTCACAGAATTCAAA 60.309 37.037 8.44 0.00 0.00 2.69
565 585 6.149973 CCAGCTTGTAGATTCACAGAATTCAA 59.850 38.462 8.44 0.00 0.00 2.69
566 586 5.645067 CCAGCTTGTAGATTCACAGAATTCA 59.355 40.000 8.44 0.00 0.00 2.57
567 587 5.645497 ACCAGCTTGTAGATTCACAGAATTC 59.355 40.000 0.00 0.00 0.00 2.17
568 588 5.564550 ACCAGCTTGTAGATTCACAGAATT 58.435 37.500 0.00 0.00 0.00 2.17
569 589 5.171339 ACCAGCTTGTAGATTCACAGAAT 57.829 39.130 0.00 0.00 0.00 2.40
570 590 4.623932 ACCAGCTTGTAGATTCACAGAA 57.376 40.909 0.00 0.00 0.00 3.02
571 591 4.623932 AACCAGCTTGTAGATTCACAGA 57.376 40.909 0.00 0.00 0.00 3.41
572 592 5.239306 TGAAAACCAGCTTGTAGATTCACAG 59.761 40.000 8.67 0.00 0.00 3.66
573 593 5.129634 TGAAAACCAGCTTGTAGATTCACA 58.870 37.500 8.67 0.00 0.00 3.58
574 594 5.239525 ACTGAAAACCAGCTTGTAGATTCAC 59.760 40.000 8.67 0.00 46.81 3.18
575 595 5.376625 ACTGAAAACCAGCTTGTAGATTCA 58.623 37.500 11.02 11.02 46.81 2.57
576 596 5.948992 ACTGAAAACCAGCTTGTAGATTC 57.051 39.130 0.00 0.00 46.81 2.52
577 597 7.665559 TCATTACTGAAAACCAGCTTGTAGATT 59.334 33.333 0.00 0.00 46.81 2.40
578 598 7.168219 TCATTACTGAAAACCAGCTTGTAGAT 58.832 34.615 0.00 0.00 46.81 1.98
579 599 6.530120 TCATTACTGAAAACCAGCTTGTAGA 58.470 36.000 0.00 0.00 46.81 2.59
580 600 6.801539 TCATTACTGAAAACCAGCTTGTAG 57.198 37.500 0.00 0.00 46.81 2.74
581 601 7.575414 TTTCATTACTGAAAACCAGCTTGTA 57.425 32.000 5.83 0.00 45.91 2.41
582 602 6.463995 TTTCATTACTGAAAACCAGCTTGT 57.536 33.333 5.83 0.00 45.91 3.16
592 612 7.237982 TCCCCTTCTGATTTTCATTACTGAAA 58.762 34.615 4.26 4.26 46.92 2.69
593 613 6.789268 TCCCCTTCTGATTTTCATTACTGAA 58.211 36.000 0.00 0.00 39.62 3.02
594 614 6.387192 TCCCCTTCTGATTTTCATTACTGA 57.613 37.500 0.00 0.00 0.00 3.41
595 615 6.405176 GCTTCCCCTTCTGATTTTCATTACTG 60.405 42.308 0.00 0.00 0.00 2.74
596 616 5.654209 GCTTCCCCTTCTGATTTTCATTACT 59.346 40.000 0.00 0.00 0.00 2.24
597 617 5.163509 GGCTTCCCCTTCTGATTTTCATTAC 60.164 44.000 0.00 0.00 0.00 1.89
598 618 4.956075 GGCTTCCCCTTCTGATTTTCATTA 59.044 41.667 0.00 0.00 0.00 1.90
599 619 3.771479 GGCTTCCCCTTCTGATTTTCATT 59.229 43.478 0.00 0.00 0.00 2.57
600 620 3.369175 GGCTTCCCCTTCTGATTTTCAT 58.631 45.455 0.00 0.00 0.00 2.57
601 621 2.807676 GGCTTCCCCTTCTGATTTTCA 58.192 47.619 0.00 0.00 0.00 2.69
634 654 8.637986 TGAATCACTAGCCATAACTTTGTTTTT 58.362 29.630 0.00 0.00 0.00 1.94
635 655 8.177119 TGAATCACTAGCCATAACTTTGTTTT 57.823 30.769 0.00 0.00 0.00 2.43
636 656 7.094205 CCTGAATCACTAGCCATAACTTTGTTT 60.094 37.037 0.00 0.00 0.00 2.83
637 657 6.375455 CCTGAATCACTAGCCATAACTTTGTT 59.625 38.462 0.00 0.00 0.00 2.83
638 658 5.882557 CCTGAATCACTAGCCATAACTTTGT 59.117 40.000 0.00 0.00 0.00 2.83
639 659 6.115446 TCCTGAATCACTAGCCATAACTTTG 58.885 40.000 0.00 0.00 0.00 2.77
640 660 6.313519 TCCTGAATCACTAGCCATAACTTT 57.686 37.500 0.00 0.00 0.00 2.66
641 661 5.957771 TCCTGAATCACTAGCCATAACTT 57.042 39.130 0.00 0.00 0.00 2.66
642 662 6.465035 GGAATCCTGAATCACTAGCCATAACT 60.465 42.308 0.00 0.00 0.00 2.24
643 663 5.703130 GGAATCCTGAATCACTAGCCATAAC 59.297 44.000 0.00 0.00 0.00 1.89
644 664 5.369404 TGGAATCCTGAATCACTAGCCATAA 59.631 40.000 0.00 0.00 0.00 1.90
645 665 4.907269 TGGAATCCTGAATCACTAGCCATA 59.093 41.667 0.00 0.00 0.00 2.74
646 666 3.718434 TGGAATCCTGAATCACTAGCCAT 59.282 43.478 0.00 0.00 0.00 4.40
647 667 3.114606 TGGAATCCTGAATCACTAGCCA 58.885 45.455 0.00 0.00 0.00 4.75
648 668 3.845781 TGGAATCCTGAATCACTAGCC 57.154 47.619 0.00 0.00 0.00 3.93
649 669 5.128919 ACATTGGAATCCTGAATCACTAGC 58.871 41.667 0.00 0.00 0.00 3.42
650 670 6.459298 GCAACATTGGAATCCTGAATCACTAG 60.459 42.308 0.00 0.00 0.00 2.57
651 671 5.357878 GCAACATTGGAATCCTGAATCACTA 59.642 40.000 0.00 0.00 0.00 2.74
652 672 4.159135 GCAACATTGGAATCCTGAATCACT 59.841 41.667 0.00 0.00 0.00 3.41
653 673 4.082081 TGCAACATTGGAATCCTGAATCAC 60.082 41.667 0.00 0.00 0.00 3.06
654 674 4.087907 TGCAACATTGGAATCCTGAATCA 58.912 39.130 0.00 0.00 0.00 2.57
655 675 4.724074 TGCAACATTGGAATCCTGAATC 57.276 40.909 0.00 0.00 0.00 2.52
656 676 4.682320 GCATGCAACATTGGAATCCTGAAT 60.682 41.667 14.21 0.00 30.51 2.57
657 677 3.368635 GCATGCAACATTGGAATCCTGAA 60.369 43.478 14.21 0.00 30.51 3.02
658 678 2.166870 GCATGCAACATTGGAATCCTGA 59.833 45.455 14.21 0.00 30.51 3.86
659 679 2.546778 GCATGCAACATTGGAATCCTG 58.453 47.619 14.21 0.00 30.51 3.86
660 680 1.135527 CGCATGCAACATTGGAATCCT 59.864 47.619 19.57 0.00 30.51 3.24
661 681 1.563111 CGCATGCAACATTGGAATCC 58.437 50.000 19.57 0.00 30.51 3.01
662 682 1.563111 CCGCATGCAACATTGGAATC 58.437 50.000 19.57 0.00 30.51 2.52
663 683 0.460635 GCCGCATGCAACATTGGAAT 60.461 50.000 19.57 0.00 40.77 3.01
664 684 1.079956 GCCGCATGCAACATTGGAA 60.080 52.632 19.57 0.00 40.77 3.53
665 685 2.572812 GCCGCATGCAACATTGGA 59.427 55.556 19.57 0.00 40.77 3.53
666 686 2.881827 CGCCGCATGCAACATTGG 60.882 61.111 19.57 10.61 41.33 3.16
667 687 0.455802 TAACGCCGCATGCAACATTG 60.456 50.000 19.57 0.00 41.33 2.82
668 688 0.455410 ATAACGCCGCATGCAACATT 59.545 45.000 19.57 5.99 41.33 2.71
669 689 0.455410 AATAACGCCGCATGCAACAT 59.545 45.000 19.57 1.79 41.33 2.71
670 690 0.242286 AAATAACGCCGCATGCAACA 59.758 45.000 19.57 0.00 41.33 3.33
671 691 0.913876 GAAATAACGCCGCATGCAAC 59.086 50.000 19.57 7.74 41.33 4.17
672 692 0.522286 CGAAATAACGCCGCATGCAA 60.522 50.000 19.57 0.00 41.33 4.08
673 693 1.061729 CGAAATAACGCCGCATGCA 59.938 52.632 19.57 0.00 41.33 3.96
674 694 0.654472 CTCGAAATAACGCCGCATGC 60.654 55.000 7.91 7.91 0.00 4.06
675 695 0.654472 GCTCGAAATAACGCCGCATG 60.654 55.000 0.00 0.00 32.82 4.06
676 696 1.641677 GCTCGAAATAACGCCGCAT 59.358 52.632 0.00 0.00 32.82 4.73
677 697 2.457778 GGCTCGAAATAACGCCGCA 61.458 57.895 0.00 0.00 33.65 5.69
678 698 2.090604 GAGGCTCGAAATAACGCCGC 62.091 60.000 0.00 2.56 46.85 6.53
679 699 1.808234 CGAGGCTCGAAATAACGCCG 61.808 60.000 32.07 0.00 46.85 6.46
680 700 0.804933 ACGAGGCTCGAAATAACGCC 60.805 55.000 40.35 3.02 43.74 5.68
681 701 0.297820 CACGAGGCTCGAAATAACGC 59.702 55.000 40.35 0.00 43.74 4.84
682 702 1.582502 GTCACGAGGCTCGAAATAACG 59.417 52.381 40.35 19.05 43.74 3.18
683 703 1.925185 GGTCACGAGGCTCGAAATAAC 59.075 52.381 40.35 26.43 43.74 1.89
694 714 0.249322 AAACACACGAGGTCACGAGG 60.249 55.000 0.00 0.00 37.03 4.63
696 716 1.282817 CAAAACACACGAGGTCACGA 58.717 50.000 0.00 0.00 37.03 4.35
738 1495 3.260884 ACACTCCAAGTCATCGTACCATT 59.739 43.478 0.00 0.00 0.00 3.16
742 1499 2.731341 CGGACACTCCAAGTCATCGTAC 60.731 54.545 0.00 0.00 35.91 3.67
753 1510 1.672030 CATTGCAGCGGACACTCCA 60.672 57.895 0.00 0.00 35.91 3.86
808 1565 0.390735 GGCGATCGGTAACCAACACT 60.391 55.000 18.30 0.00 0.00 3.55
809 1566 1.689352 CGGCGATCGGTAACCAACAC 61.689 60.000 18.30 0.00 34.75 3.32
810 1567 1.446445 CGGCGATCGGTAACCAACA 60.446 57.895 18.30 0.00 34.75 3.33
811 1568 2.805807 GCGGCGATCGGTAACCAAC 61.806 63.158 18.30 0.75 39.69 3.77
853 1611 3.250762 CCGATCTGACTGTTGCTCAAAAA 59.749 43.478 0.00 0.00 0.00 1.94
854 1612 2.807967 CCGATCTGACTGTTGCTCAAAA 59.192 45.455 0.00 0.00 0.00 2.44
855 1613 2.037121 TCCGATCTGACTGTTGCTCAAA 59.963 45.455 0.00 0.00 0.00 2.69
856 1614 1.618343 TCCGATCTGACTGTTGCTCAA 59.382 47.619 0.00 0.00 0.00 3.02
857 1615 1.256812 TCCGATCTGACTGTTGCTCA 58.743 50.000 0.00 0.00 0.00 4.26
858 1616 2.593346 ATCCGATCTGACTGTTGCTC 57.407 50.000 0.00 0.00 0.00 4.26
859 1617 2.234661 TCAATCCGATCTGACTGTTGCT 59.765 45.455 0.00 0.00 0.00 3.91
860 1618 2.621338 TCAATCCGATCTGACTGTTGC 58.379 47.619 0.00 0.00 0.00 4.17
948 1736 2.371923 TGAATCGTGCGTGAGTGCG 61.372 57.895 0.00 0.00 37.81 5.34
951 1739 0.109272 ATCGTGAATCGTGCGTGAGT 60.109 50.000 0.00 0.00 40.80 3.41
953 1741 2.648972 GATCGTGAATCGTGCGTGA 58.351 52.632 0.00 0.00 40.80 4.35
961 1749 1.056103 CATCGGCTCGATCGTGAATC 58.944 55.000 20.54 8.13 45.19 2.52
963 1751 1.065764 CCATCGGCTCGATCGTGAA 59.934 57.895 20.54 5.69 45.19 3.18
964 1752 1.786049 CTCCATCGGCTCGATCGTGA 61.786 60.000 20.54 12.02 45.19 4.35
965 1753 1.371022 CTCCATCGGCTCGATCGTG 60.371 63.158 15.94 14.19 45.19 4.35
967 1755 1.796190 TTCCTCCATCGGCTCGATCG 61.796 60.000 9.36 9.36 45.19 3.69
970 1758 2.786495 GCTTCCTCCATCGGCTCGA 61.786 63.158 0.00 0.00 41.13 4.04
974 1762 2.203126 CTGGCTTCCTCCATCGGC 60.203 66.667 0.00 0.00 35.22 5.54
975 1763 1.333636 ACTCTGGCTTCCTCCATCGG 61.334 60.000 0.00 0.00 35.22 4.18
977 1765 0.463474 GCACTCTGGCTTCCTCCATC 60.463 60.000 0.00 0.00 35.22 3.51
979 1767 2.947532 CGCACTCTGGCTTCCTCCA 61.948 63.158 0.00 0.00 34.42 3.86
981 1769 1.004440 AACGCACTCTGGCTTCCTC 60.004 57.895 0.00 0.00 0.00 3.71
982 1770 1.302033 CAACGCACTCTGGCTTCCT 60.302 57.895 0.00 0.00 0.00 3.36
983 1771 2.970974 GCAACGCACTCTGGCTTCC 61.971 63.158 0.00 0.00 0.00 3.46
984 1772 1.580845 ATGCAACGCACTCTGGCTTC 61.581 55.000 0.00 0.00 43.04 3.86
985 1773 1.174712 AATGCAACGCACTCTGGCTT 61.175 50.000 0.00 0.00 43.04 4.35
986 1774 1.174712 AAATGCAACGCACTCTGGCT 61.175 50.000 0.00 0.00 43.04 4.75
987 1775 0.521291 TAAATGCAACGCACTCTGGC 59.479 50.000 0.00 0.00 43.04 4.85
988 1776 2.414559 CCTTAAATGCAACGCACTCTGG 60.415 50.000 0.00 0.00 43.04 3.86
991 1779 3.552604 TTCCTTAAATGCAACGCACTC 57.447 42.857 0.00 0.00 43.04 3.51
992 1780 4.519540 ATTTCCTTAAATGCAACGCACT 57.480 36.364 0.00 0.00 43.04 4.40
994 1782 5.988561 AGAAAATTTCCTTAAATGCAACGCA 59.011 32.000 1.57 0.00 44.86 5.24
995 1783 6.466308 AGAAAATTTCCTTAAATGCAACGC 57.534 33.333 1.57 0.00 35.46 4.84
997 1785 8.376889 TGGAAGAAAATTTCCTTAAATGCAAC 57.623 30.769 1.57 0.00 45.59 4.17
998 1786 8.970859 TTGGAAGAAAATTTCCTTAAATGCAA 57.029 26.923 1.57 0.00 45.59 4.08
999 1787 9.218440 GATTGGAAGAAAATTTCCTTAAATGCA 57.782 29.630 1.57 0.00 45.59 3.96
1000 1788 8.668353 GGATTGGAAGAAAATTTCCTTAAATGC 58.332 33.333 1.57 2.88 45.59 3.56
1001 1789 8.872845 CGGATTGGAAGAAAATTTCCTTAAATG 58.127 33.333 1.57 0.00 45.59 2.32
1002 1790 8.040727 CCGGATTGGAAGAAAATTTCCTTAAAT 58.959 33.333 0.00 0.00 45.59 1.40
1048 3569 9.726438 CTAACAAAGAAGGAAGGAGAAGAATAA 57.274 33.333 0.00 0.00 0.00 1.40
1072 3593 1.284111 TGGAGGGAGAGGCGGTACTA 61.284 60.000 0.00 0.00 0.00 1.82
1073 3594 2.164332 TTGGAGGGAGAGGCGGTACT 62.164 60.000 0.00 0.00 0.00 2.73
1074 3595 1.049289 ATTGGAGGGAGAGGCGGTAC 61.049 60.000 0.00 0.00 0.00 3.34
1075 3596 0.759436 GATTGGAGGGAGAGGCGGTA 60.759 60.000 0.00 0.00 0.00 4.02
1128 3659 0.549469 GCGGAAGGGGGAGGAAATAA 59.451 55.000 0.00 0.00 0.00 1.40
1135 3666 4.778143 CAACGGCGGAAGGGGGAG 62.778 72.222 13.24 0.00 0.00 4.30
1168 3713 3.257873 CCTCTCTTCTTGAGCTTGTCTGA 59.742 47.826 0.00 0.00 42.38 3.27
1169 3714 3.257873 TCCTCTCTTCTTGAGCTTGTCTG 59.742 47.826 0.00 0.00 42.38 3.51
1192 3737 2.939103 GCTGTCTGTCTCTCTCTCTCTC 59.061 54.545 0.00 0.00 0.00 3.20
1241 3790 0.248417 CGTCATGGTCGCTCTCTCAG 60.248 60.000 0.00 0.00 0.00 3.35
1281 3830 1.014044 TGGTCGCTTGCTCAACGATC 61.014 55.000 0.00 9.30 38.22 3.69
1282 3831 0.602638 TTGGTCGCTTGCTCAACGAT 60.603 50.000 0.00 0.00 38.22 3.73
1705 4281 3.314331 CACGTCAGCCTCCCACCT 61.314 66.667 0.00 0.00 0.00 4.00
1829 4405 1.992277 CCTGCCCTGGACTACTGCT 60.992 63.158 0.00 0.00 0.00 4.24
1870 4454 3.771216 AGCAAAGATGGTCCAAGAACAT 58.229 40.909 0.00 0.00 43.25 2.71
1878 4505 2.164422 GGCAACTAAGCAAAGATGGTCC 59.836 50.000 0.00 0.00 35.91 4.46
2030 4714 6.303021 ACGCATGATTTTTGCAGAAAATTT 57.697 29.167 6.49 3.19 40.14 1.82
2042 4726 6.866480 AGTTGATCCAATAACGCATGATTTT 58.134 32.000 0.00 0.00 32.24 1.82
2078 4762 6.475076 TGGAAAATTAATTCGGCATCAAATCG 59.525 34.615 0.10 0.00 0.00 3.34
2102 4786 4.809426 GGTACCGGATTGTCTTACTTCATG 59.191 45.833 9.46 0.00 0.00 3.07
2130 4814 5.600785 GCAGCATGTTCGAAAGGAAACTTG 61.601 45.833 0.00 0.00 45.80 3.16
2267 5929 5.937111 AGTGGTTAAAGACTTTTAGGCTGA 58.063 37.500 5.61 0.00 30.77 4.26
2268 5930 6.262273 TCAAGTGGTTAAAGACTTTTAGGCTG 59.738 38.462 5.61 0.00 30.77 4.85
2269 5931 6.262496 GTCAAGTGGTTAAAGACTTTTAGGCT 59.738 38.462 5.61 0.00 32.54 4.58
2270 5932 6.038936 TGTCAAGTGGTTAAAGACTTTTAGGC 59.961 38.462 5.61 0.00 29.73 3.93
2271 5933 7.562454 TGTCAAGTGGTTAAAGACTTTTAGG 57.438 36.000 5.61 0.00 29.73 2.69
2423 6097 7.432869 TGCAATGAAAATTTAAGCTGTGTAGT 58.567 30.769 0.00 0.00 0.00 2.73
2477 6164 9.764363 TCATGACTATCTAGCGTTTAATTCAAT 57.236 29.630 0.00 0.00 0.00 2.57
2478 6165 9.249457 CTCATGACTATCTAGCGTTTAATTCAA 57.751 33.333 0.00 0.00 0.00 2.69
2549 6249 2.875296 TGCATGCCAGTTAGTTCCTTT 58.125 42.857 16.68 0.00 0.00 3.11
2585 6285 9.740239 TTACTCATGTACGATGTTATTCTTACC 57.260 33.333 0.00 0.00 0.00 2.85
2590 6290 8.004344 GTGCATTACTCATGTACGATGTTATTC 58.996 37.037 0.00 0.00 38.54 1.75
2592 6292 7.408132 GTGCATTACTCATGTACGATGTTAT 57.592 36.000 0.00 0.00 38.54 1.89
2593 6293 6.822073 GTGCATTACTCATGTACGATGTTA 57.178 37.500 0.00 0.00 38.54 2.41
2734 6714 1.734465 GCAGAACCTTGAAGACCATCG 59.266 52.381 0.00 0.00 0.00 3.84
2814 6794 1.434555 TTGTTTCGTCGCGATGGATT 58.565 45.000 26.94 0.00 35.23 3.01
2838 6828 1.863454 GCTATCGTCGAAGTCTCGGTA 59.137 52.381 0.00 0.00 45.49 4.02
2884 6877 1.669795 GGCCAAAATTCTTCCTGCACG 60.670 52.381 0.00 0.00 0.00 5.34
2910 6911 2.208349 ACCTGCCCCAAGTCTCCT 59.792 61.111 0.00 0.00 0.00 3.69
2929 6930 7.709182 GGCAAGAACCAGTTTGTTTTAGTTAAT 59.291 33.333 0.00 0.00 0.00 1.40
2996 7003 0.311790 CATTTGTGAAGTGCCGCAGT 59.688 50.000 0.00 0.00 0.00 4.40
3021 7028 6.658188 ATAAATTCCACCCTTTGTCGAAAA 57.342 33.333 0.00 0.00 27.59 2.29
3022 7029 6.265649 TCAATAAATTCCACCCTTTGTCGAAA 59.734 34.615 0.00 0.00 27.59 3.46
3023 7030 5.770663 TCAATAAATTCCACCCTTTGTCGAA 59.229 36.000 0.00 0.00 0.00 3.71
3024 7031 5.182380 GTCAATAAATTCCACCCTTTGTCGA 59.818 40.000 0.00 0.00 0.00 4.20
3025 7032 5.183140 AGTCAATAAATTCCACCCTTTGTCG 59.817 40.000 0.00 0.00 0.00 4.35
3026 7033 6.208599 TGAGTCAATAAATTCCACCCTTTGTC 59.791 38.462 0.00 0.00 0.00 3.18
3027 7034 6.074648 TGAGTCAATAAATTCCACCCTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
3028 7035 6.588719 TGAGTCAATAAATTCCACCCTTTG 57.411 37.500 0.00 0.00 0.00 2.77
3029 7036 7.610580 TTTGAGTCAATAAATTCCACCCTTT 57.389 32.000 6.36 0.00 0.00 3.11
3030 7037 7.610580 TTTTGAGTCAATAAATTCCACCCTT 57.389 32.000 6.36 0.00 0.00 3.95
3031 7038 7.454380 TCATTTTGAGTCAATAAATTCCACCCT 59.546 33.333 6.36 0.00 0.00 4.34
3032 7039 7.610865 TCATTTTGAGTCAATAAATTCCACCC 58.389 34.615 6.36 0.00 0.00 4.61
3033 7040 9.143631 CTTCATTTTGAGTCAATAAATTCCACC 57.856 33.333 6.36 0.00 0.00 4.61
3034 7041 8.650714 GCTTCATTTTGAGTCAATAAATTCCAC 58.349 33.333 6.36 0.00 0.00 4.02
3035 7042 8.366401 TGCTTCATTTTGAGTCAATAAATTCCA 58.634 29.630 6.36 0.00 0.00 3.53
3036 7043 8.761575 TGCTTCATTTTGAGTCAATAAATTCC 57.238 30.769 6.36 0.00 0.00 3.01
3038 7045 9.932207 TGATGCTTCATTTTGAGTCAATAAATT 57.068 25.926 6.36 0.00 0.00 1.82
3039 7046 9.932207 TTGATGCTTCATTTTGAGTCAATAAAT 57.068 25.926 6.36 1.61 0.00 1.40
3040 7047 9.414295 CTTGATGCTTCATTTTGAGTCAATAAA 57.586 29.630 6.36 0.00 0.00 1.40
3041 7048 8.795513 TCTTGATGCTTCATTTTGAGTCAATAA 58.204 29.630 6.36 4.84 0.00 1.40
3042 7049 8.339344 TCTTGATGCTTCATTTTGAGTCAATA 57.661 30.769 6.36 1.98 0.00 1.90
3043 7050 7.223260 TCTTGATGCTTCATTTTGAGTCAAT 57.777 32.000 6.36 0.00 0.00 2.57
3044 7051 6.638096 TCTTGATGCTTCATTTTGAGTCAA 57.362 33.333 0.08 0.08 0.00 3.18
3045 7052 6.487668 TCTTCTTGATGCTTCATTTTGAGTCA 59.512 34.615 2.75 0.00 0.00 3.41
3046 7053 6.906659 TCTTCTTGATGCTTCATTTTGAGTC 58.093 36.000 2.75 0.00 0.00 3.36
3047 7054 6.889301 TCTTCTTGATGCTTCATTTTGAGT 57.111 33.333 2.75 0.00 0.00 3.41
3048 7055 8.456471 TGTATCTTCTTGATGCTTCATTTTGAG 58.544 33.333 2.75 0.00 38.39 3.02
3049 7056 8.339344 TGTATCTTCTTGATGCTTCATTTTGA 57.661 30.769 2.75 1.59 38.39 2.69
3053 7060 9.399797 TGTTATGTATCTTCTTGATGCTTCATT 57.600 29.630 2.75 0.00 38.39 2.57
3054 7061 8.834465 GTGTTATGTATCTTCTTGATGCTTCAT 58.166 33.333 2.75 0.00 38.39 2.57
3055 7062 7.823799 TGTGTTATGTATCTTCTTGATGCTTCA 59.176 33.333 0.00 0.00 38.39 3.02
3056 7063 8.201554 TGTGTTATGTATCTTCTTGATGCTTC 57.798 34.615 0.00 0.00 38.39 3.86
3057 7064 8.565896 TTGTGTTATGTATCTTCTTGATGCTT 57.434 30.769 0.00 0.00 38.39 3.91
3058 7065 8.743085 ATTGTGTTATGTATCTTCTTGATGCT 57.257 30.769 0.00 0.00 38.39 3.79
3068 7075 8.726988 GGTGTGTGTTTATTGTGTTATGTATCT 58.273 33.333 0.00 0.00 0.00 1.98
3069 7076 7.966204 GGGTGTGTGTTTATTGTGTTATGTATC 59.034 37.037 0.00 0.00 0.00 2.24
3070 7077 7.361371 CGGGTGTGTGTTTATTGTGTTATGTAT 60.361 37.037 0.00 0.00 0.00 2.29
3071 7078 6.073167 CGGGTGTGTGTTTATTGTGTTATGTA 60.073 38.462 0.00 0.00 0.00 2.29
3072 7079 5.278071 CGGGTGTGTGTTTATTGTGTTATGT 60.278 40.000 0.00 0.00 0.00 2.29
3073 7080 5.150683 CGGGTGTGTGTTTATTGTGTTATG 58.849 41.667 0.00 0.00 0.00 1.90
3074 7081 4.216687 CCGGGTGTGTGTTTATTGTGTTAT 59.783 41.667 0.00 0.00 0.00 1.89
3075 7082 3.564644 CCGGGTGTGTGTTTATTGTGTTA 59.435 43.478 0.00 0.00 0.00 2.41
3076 7083 2.359531 CCGGGTGTGTGTTTATTGTGTT 59.640 45.455 0.00 0.00 0.00 3.32
3077 7084 1.950909 CCGGGTGTGTGTTTATTGTGT 59.049 47.619 0.00 0.00 0.00 3.72
3078 7085 1.335506 GCCGGGTGTGTGTTTATTGTG 60.336 52.381 2.18 0.00 0.00 3.33
3079 7086 0.955905 GCCGGGTGTGTGTTTATTGT 59.044 50.000 2.18 0.00 0.00 2.71
3080 7087 0.242555 GGCCGGGTGTGTGTTTATTG 59.757 55.000 2.18 0.00 0.00 1.90
3081 7088 0.111639 AGGCCGGGTGTGTGTTTATT 59.888 50.000 2.18 0.00 0.00 1.40
3082 7089 0.322187 GAGGCCGGGTGTGTGTTTAT 60.322 55.000 2.18 0.00 0.00 1.40
3083 7090 1.071814 GAGGCCGGGTGTGTGTTTA 59.928 57.895 2.18 0.00 0.00 2.01
3084 7091 2.203294 GAGGCCGGGTGTGTGTTT 60.203 61.111 2.18 0.00 0.00 2.83
3085 7092 3.168528 AGAGGCCGGGTGTGTGTT 61.169 61.111 2.18 0.00 0.00 3.32
3086 7093 3.941188 CAGAGGCCGGGTGTGTGT 61.941 66.667 2.18 0.00 0.00 3.72
3089 7096 2.930385 CTATGCAGAGGCCGGGTGTG 62.930 65.000 2.18 0.00 40.13 3.82
3090 7097 2.687200 TATGCAGAGGCCGGGTGT 60.687 61.111 2.18 0.00 40.13 4.16
3091 7098 2.109799 CTATGCAGAGGCCGGGTG 59.890 66.667 2.18 0.00 40.13 4.61
3092 7099 2.946988 TAGCTATGCAGAGGCCGGGT 62.947 60.000 10.92 0.00 40.13 5.28
3093 7100 2.164865 CTAGCTATGCAGAGGCCGGG 62.165 65.000 10.92 0.00 40.13 5.73
3094 7101 1.291588 CTAGCTATGCAGAGGCCGG 59.708 63.158 10.92 0.00 40.13 6.13
3095 7102 1.181741 TCCTAGCTATGCAGAGGCCG 61.182 60.000 10.92 0.23 40.13 6.13
3096 7103 1.066286 CATCCTAGCTATGCAGAGGCC 60.066 57.143 10.92 0.00 40.13 5.19
3097 7104 2.383368 CATCCTAGCTATGCAGAGGC 57.617 55.000 10.92 5.36 35.01 4.70
3104 7111 2.141517 GCTGTGTGCATCCTAGCTATG 58.858 52.381 0.00 0.00 42.31 2.23
3105 7112 1.071385 GGCTGTGTGCATCCTAGCTAT 59.929 52.381 12.70 0.00 45.15 2.97
3106 7113 0.465705 GGCTGTGTGCATCCTAGCTA 59.534 55.000 12.70 0.00 45.15 3.32
3107 7114 1.222936 GGCTGTGTGCATCCTAGCT 59.777 57.895 12.70 0.00 45.15 3.32
3108 7115 0.677731 TTGGCTGTGTGCATCCTAGC 60.678 55.000 0.00 0.00 45.15 3.42
3109 7116 1.089920 GTTGGCTGTGTGCATCCTAG 58.910 55.000 0.00 0.00 45.15 3.02
3110 7117 0.399833 TGTTGGCTGTGTGCATCCTA 59.600 50.000 0.00 0.00 45.15 2.94
3111 7118 0.251474 ATGTTGGCTGTGTGCATCCT 60.251 50.000 0.00 0.00 45.15 3.24
3112 7119 0.171903 GATGTTGGCTGTGTGCATCC 59.828 55.000 0.00 0.00 45.15 3.51
3113 7120 0.883153 TGATGTTGGCTGTGTGCATC 59.117 50.000 0.00 0.00 45.15 3.91
3114 7121 1.552578 ATGATGTTGGCTGTGTGCAT 58.447 45.000 0.00 0.00 45.15 3.96
3115 7122 1.330234 AATGATGTTGGCTGTGTGCA 58.670 45.000 0.00 0.00 45.15 4.57
3116 7123 2.288334 TGAAATGATGTTGGCTGTGTGC 60.288 45.455 0.00 0.00 41.94 4.57
3117 7124 3.243468 TGTGAAATGATGTTGGCTGTGTG 60.243 43.478 0.00 0.00 0.00 3.82
3118 7125 2.957680 TGTGAAATGATGTTGGCTGTGT 59.042 40.909 0.00 0.00 0.00 3.72
3119 7126 3.243468 TGTGTGAAATGATGTTGGCTGTG 60.243 43.478 0.00 0.00 0.00 3.66
3120 7127 2.957680 TGTGTGAAATGATGTTGGCTGT 59.042 40.909 0.00 0.00 0.00 4.40
3121 7128 3.311106 GTGTGTGAAATGATGTTGGCTG 58.689 45.455 0.00 0.00 0.00 4.85
3122 7129 2.030893 CGTGTGTGAAATGATGTTGGCT 60.031 45.455 0.00 0.00 0.00 4.75
3123 7130 2.318578 CGTGTGTGAAATGATGTTGGC 58.681 47.619 0.00 0.00 0.00 4.52
3124 7131 2.318578 GCGTGTGTGAAATGATGTTGG 58.681 47.619 0.00 0.00 0.00 3.77
3125 7132 1.971284 CGCGTGTGTGAAATGATGTTG 59.029 47.619 0.00 0.00 0.00 3.33
3126 7133 1.870402 TCGCGTGTGTGAAATGATGTT 59.130 42.857 5.77 0.00 0.00 2.71
3127 7134 1.507562 TCGCGTGTGTGAAATGATGT 58.492 45.000 5.77 0.00 0.00 3.06
3128 7135 2.592796 TTCGCGTGTGTGAAATGATG 57.407 45.000 5.77 0.00 41.42 3.07
3134 7141 3.206348 CGTTTTTCGCGTGTGTGAA 57.794 47.368 5.77 0.00 42.60 3.18
3135 7142 4.957363 CGTTTTTCGCGTGTGTGA 57.043 50.000 5.77 0.00 0.00 3.58
3144 7151 2.235536 CTAGGTGCCGGCGTTTTTCG 62.236 60.000 23.90 2.56 43.12 3.46
3145 7152 1.500396 CTAGGTGCCGGCGTTTTTC 59.500 57.895 23.90 7.16 0.00 2.29
3146 7153 2.622962 GCTAGGTGCCGGCGTTTTT 61.623 57.895 23.90 7.97 35.15 1.94
3147 7154 3.053896 GCTAGGTGCCGGCGTTTT 61.054 61.111 23.90 9.92 35.15 2.43
3148 7155 3.835790 TTGCTAGGTGCCGGCGTTT 62.836 57.895 23.90 11.90 42.00 3.60
3149 7156 3.835790 TTTGCTAGGTGCCGGCGTT 62.836 57.895 23.90 12.30 42.00 4.84
3150 7157 4.323477 TTTGCTAGGTGCCGGCGT 62.323 61.111 23.90 11.75 42.00 5.68
3151 7158 3.499737 CTTTGCTAGGTGCCGGCG 61.500 66.667 23.90 8.09 42.00 6.46
3152 7159 2.359975 ACTTTGCTAGGTGCCGGC 60.360 61.111 22.73 22.73 42.00 6.13
3153 7160 0.392998 ATGACTTTGCTAGGTGCCGG 60.393 55.000 0.00 0.00 42.00 6.13
3154 7161 2.309528 TATGACTTTGCTAGGTGCCG 57.690 50.000 0.00 0.00 42.00 5.69
3155 7162 5.467063 GTCTTATATGACTTTGCTAGGTGCC 59.533 44.000 10.70 0.00 36.08 5.01
3156 7163 5.467063 GGTCTTATATGACTTTGCTAGGTGC 59.533 44.000 15.98 0.00 38.36 5.01
3157 7164 6.582636 TGGTCTTATATGACTTTGCTAGGTG 58.417 40.000 15.98 0.00 37.16 4.00
3158 7165 6.808321 TGGTCTTATATGACTTTGCTAGGT 57.192 37.500 15.98 0.00 37.16 3.08
3159 7166 7.254932 GCTTTGGTCTTATATGACTTTGCTAGG 60.255 40.741 15.98 2.12 37.16 3.02
3160 7167 7.497249 AGCTTTGGTCTTATATGACTTTGCTAG 59.503 37.037 15.98 8.24 37.16 3.42
3161 7168 7.338710 AGCTTTGGTCTTATATGACTTTGCTA 58.661 34.615 15.98 0.00 37.16 3.49
3162 7169 6.183347 AGCTTTGGTCTTATATGACTTTGCT 58.817 36.000 15.98 15.76 37.16 3.91
3163 7170 6.442513 AGCTTTGGTCTTATATGACTTTGC 57.557 37.500 15.98 14.33 37.16 3.68
3164 7171 9.113838 ACATAGCTTTGGTCTTATATGACTTTG 57.886 33.333 15.98 5.85 37.16 2.77
3165 7172 9.113838 CACATAGCTTTGGTCTTATATGACTTT 57.886 33.333 15.98 2.42 37.16 2.66
3166 7173 8.267894 ACACATAGCTTTGGTCTTATATGACTT 58.732 33.333 15.98 2.16 37.16 3.01
3167 7174 7.796054 ACACATAGCTTTGGTCTTATATGACT 58.204 34.615 15.98 1.32 37.16 3.41
3168 7175 9.197694 CTACACATAGCTTTGGTCTTATATGAC 57.802 37.037 9.08 9.70 36.31 3.06
3169 7176 9.143155 TCTACACATAGCTTTGGTCTTATATGA 57.857 33.333 9.08 0.00 0.00 2.15
3170 7177 9.197694 GTCTACACATAGCTTTGGTCTTATATG 57.802 37.037 9.08 0.00 0.00 1.78
3171 7178 8.924303 TGTCTACACATAGCTTTGGTCTTATAT 58.076 33.333 9.08 0.00 0.00 0.86
3172 7179 8.301252 TGTCTACACATAGCTTTGGTCTTATA 57.699 34.615 9.08 0.00 0.00 0.98
3173 7180 7.182817 TGTCTACACATAGCTTTGGTCTTAT 57.817 36.000 9.08 0.00 0.00 1.73
3174 7181 6.599356 TGTCTACACATAGCTTTGGTCTTA 57.401 37.500 9.08 0.00 0.00 2.10
3175 7182 5.483685 TGTCTACACATAGCTTTGGTCTT 57.516 39.130 9.08 0.00 0.00 3.01
3176 7183 5.482908 CTTGTCTACACATAGCTTTGGTCT 58.517 41.667 9.08 0.00 30.55 3.85
3177 7184 4.631813 CCTTGTCTACACATAGCTTTGGTC 59.368 45.833 9.08 0.00 30.55 4.02
3178 7185 4.286032 TCCTTGTCTACACATAGCTTTGGT 59.714 41.667 9.08 6.37 30.55 3.67
3179 7186 4.832248 TCCTTGTCTACACATAGCTTTGG 58.168 43.478 9.08 0.75 30.55 3.28
3180 7187 6.801539 TTTCCTTGTCTACACATAGCTTTG 57.198 37.500 2.27 2.27 30.55 2.77



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.