Multiple sequence alignment - TraesCS7B01G239700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G239700 chr7B 100.000 6381 0 0 1 6381 445673993 445667613 0.000000e+00 11784.0
1 TraesCS7B01G239700 chr7D 93.812 3426 118 28 3002 6381 428032578 428029201 0.000000e+00 5066.0
2 TraesCS7B01G239700 chr7D 94.668 1463 56 12 1567 3021 428034855 428033407 0.000000e+00 2250.0
3 TraesCS7B01G239700 chr7D 96.516 861 26 3 714 1572 428035773 428034915 0.000000e+00 1421.0
4 TraesCS7B01G239700 chr7D 88.889 252 26 2 1 250 428038605 428038354 6.210000e-80 309.0
5 TraesCS7B01G239700 chr7D 81.356 118 16 4 289 406 428035871 428035760 2.450000e-14 91.6
6 TraesCS7B01G239700 chr7A 95.060 2976 120 13 714 3679 504206984 504209942 0.000000e+00 4656.0
7 TraesCS7B01G239700 chr7A 89.609 1559 72 23 4316 5833 504213065 504214574 0.000000e+00 1899.0
8 TraesCS7B01G239700 chr7A 95.360 625 25 3 3698 4320 504209925 504210547 0.000000e+00 990.0
9 TraesCS7B01G239700 chr7A 87.347 245 27 3 3 245 504206038 504206280 1.750000e-70 278.0
10 TraesCS7B01G239700 chr7A 97.222 36 1 0 371 406 504206962 504206997 1.920000e-05 62.1
11 TraesCS7B01G239700 chr5A 79.697 857 132 31 903 1743 6493367 6492537 1.190000e-161 580.0
12 TraesCS7B01G239700 chr5A 81.238 533 71 18 3001 3515 6491692 6491171 2.770000e-108 403.0
13 TraesCS7B01G239700 chr5A 83.038 395 53 9 4713 5093 6490417 6490023 4.740000e-91 346.0
14 TraesCS7B01G239700 chr5A 83.514 370 45 10 4014 4367 6491148 6490779 1.330000e-86 331.0
15 TraesCS7B01G239700 chr5A 79.866 298 30 18 2024 2315 6492191 6491918 2.350000e-44 191.0
16 TraesCS7B01G239700 chr5A 88.660 97 7 3 476 570 513643491 513643585 1.450000e-21 115.0
17 TraesCS7B01G239700 chr5D 76.395 1165 150 71 4002 5092 8359971 8358858 4.410000e-141 512.0
18 TraesCS7B01G239700 chr5D 79.498 478 81 13 2999 3466 8360453 8359983 2.220000e-84 324.0
19 TraesCS7B01G239700 chr5D 90.698 129 7 2 2194 2317 8360815 8360687 3.960000e-37 167.0
20 TraesCS7B01G239700 chr3D 85.079 315 34 6 415 717 606163603 606163916 6.210000e-80 309.0
21 TraesCS7B01G239700 chr4A 83.846 130 21 0 432 561 522150901 522151030 2.420000e-24 124.0
22 TraesCS7B01G239700 chr6D 85.000 120 13 5 465 581 471476852 471476969 4.040000e-22 117.0
23 TraesCS7B01G239700 chr2B 81.600 125 14 9 465 584 597538147 597538267 1.890000e-15 95.3
24 TraesCS7B01G239700 chr2A 89.062 64 7 0 129 192 758809162 758809225 5.300000e-11 80.5
25 TraesCS7B01G239700 chr1D 79.851 134 8 16 455 581 453470741 453470862 5.300000e-11 80.5
26 TraesCS7B01G239700 chr6A 87.692 65 8 0 128 192 542252283 542252219 6.860000e-10 76.8
27 TraesCS7B01G239700 chr6A 80.000 80 14 2 641 718 593794385 593794464 2.480000e-04 58.4
28 TraesCS7B01G239700 chr5B 85.938 64 9 0 129 192 86252339 86252402 1.150000e-07 69.4
29 TraesCS7B01G239700 chr3B 85.938 64 9 0 129 192 23155737 23155800 1.150000e-07 69.4
30 TraesCS7B01G239700 chr1B 85.938 64 9 0 129 192 678309083 678309020 1.150000e-07 69.4
31 TraesCS7B01G239700 chr6B 84.375 64 10 0 129 192 84751302 84751365 5.340000e-06 63.9
32 TraesCS7B01G239700 chr4D 84.375 64 10 0 129 192 396180564 396180501 5.340000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G239700 chr7B 445667613 445673993 6380 True 11784.000000 11784 100.0000 1 6381 1 chr7B.!!$R1 6380
1 TraesCS7B01G239700 chr7D 428029201 428038605 9404 True 1827.520000 5066 91.0482 1 6381 5 chr7D.!!$R1 6380
2 TraesCS7B01G239700 chr7A 504206038 504214574 8536 False 1577.020000 4656 92.9196 3 5833 5 chr7A.!!$F1 5830
3 TraesCS7B01G239700 chr5A 6490023 6493367 3344 True 370.200000 580 81.4706 903 5093 5 chr5A.!!$R1 4190
4 TraesCS7B01G239700 chr5D 8358858 8360815 1957 True 334.333333 512 82.1970 2194 5092 3 chr5D.!!$R1 2898

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 2878 0.035176 TCAACCCCTTACGAAACCCG 59.965 55.000 0.00 0.00 45.44 5.28 F
772 3244 0.040351 CAGTCTCCCACCCTCTCTGA 59.960 60.000 0.00 0.00 0.00 3.27 F
1904 4571 1.065854 GTGTGAGGGGAGTTGGATGAG 60.066 57.143 0.00 0.00 0.00 2.90 F
2806 5486 2.158971 GGGTTTGCAACACCAACAGAAT 60.159 45.455 23.39 0.00 35.80 2.40 F
4495 10627 1.808343 GATGCATGCATCGCCATAAGA 59.192 47.619 37.33 6.66 42.55 2.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1811 4363 1.583556 TCTGCTCCCATACCATGTGT 58.416 50.000 0.00 0.00 0.00 3.72 R
2121 4794 2.036958 CACTCTGGTGTTGTGTCCAA 57.963 50.000 0.00 0.00 38.54 3.53 R
3760 7309 1.745087 CGGCTATGTTTCTGCCAACAT 59.255 47.619 10.02 10.02 46.82 2.71 R
4553 10690 2.755655 ACGTCATCTTTCTCATCTCCGT 59.244 45.455 0.00 0.00 0.00 4.69 R
5871 12100 1.068895 TGCCAGCATTCACAAACCAAG 59.931 47.619 0.00 0.00 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.320352 GTTTGGTTTCCAACAATAATACTTTGT 57.680 29.630 0.35 0.00 43.82 2.83
37 38 7.364200 TGGTTTCCAACAATAATACTTTGTCG 58.636 34.615 0.00 0.00 36.32 4.35
157 159 7.391554 ACATAGCAAGATTAAAGCTGTGAAGAA 59.608 33.333 15.51 0.00 46.34 2.52
167 169 6.603940 AAAGCTGTGAAGAACTCTAGATCT 57.396 37.500 0.00 0.00 0.00 2.75
202 204 6.105397 TCTTCTTCGGTACTAAAACCATGT 57.895 37.500 0.00 0.00 39.71 3.21
216 218 4.820894 AACCATGTCACTTACTACCTCC 57.179 45.455 0.00 0.00 0.00 4.30
219 221 3.194968 CCATGTCACTTACTACCTCCGTT 59.805 47.826 0.00 0.00 0.00 4.44
231 233 5.267587 ACTACCTCCGTTCCTAAATACAGT 58.732 41.667 0.00 0.00 0.00 3.55
235 238 4.100707 TCCGTTCCTAAATACAGTCGTG 57.899 45.455 0.00 0.00 0.00 4.35
251 254 3.128589 AGTCGTGTTTGCAGTTCAAATGT 59.871 39.130 0.00 0.00 45.43 2.71
252 255 3.240401 GTCGTGTTTGCAGTTCAAATGTG 59.760 43.478 0.00 0.00 45.43 3.21
253 256 2.535166 CGTGTTTGCAGTTCAAATGTGG 59.465 45.455 0.00 0.00 45.43 4.17
254 257 3.733380 CGTGTTTGCAGTTCAAATGTGGA 60.733 43.478 0.00 0.00 45.43 4.02
255 258 4.370917 GTGTTTGCAGTTCAAATGTGGAT 58.629 39.130 0.00 0.00 45.43 3.41
257 260 4.099113 TGTTTGCAGTTCAAATGTGGATGA 59.901 37.500 0.00 0.00 45.43 2.92
258 261 3.921119 TGCAGTTCAAATGTGGATGAC 57.079 42.857 0.00 0.00 0.00 3.06
281 2753 6.653020 ACATTACACTAATGAGAGCATCCAA 58.347 36.000 8.63 0.00 46.52 3.53
288 2760 5.604231 ACTAATGAGAGCATCCAACCTCATA 59.396 40.000 0.00 0.00 43.29 2.15
289 2761 4.620589 ATGAGAGCATCCAACCTCATAG 57.379 45.455 0.00 0.00 42.57 2.23
290 2762 2.103771 TGAGAGCATCCAACCTCATAGC 59.896 50.000 0.00 0.00 33.66 2.97
291 2763 1.419387 AGAGCATCCAACCTCATAGCC 59.581 52.381 0.00 0.00 33.66 3.93
292 2764 1.419387 GAGCATCCAACCTCATAGCCT 59.581 52.381 0.00 0.00 0.00 4.58
293 2765 1.849039 AGCATCCAACCTCATAGCCTT 59.151 47.619 0.00 0.00 0.00 4.35
294 2766 2.158696 AGCATCCAACCTCATAGCCTTC 60.159 50.000 0.00 0.00 0.00 3.46
295 2767 2.421952 GCATCCAACCTCATAGCCTTCA 60.422 50.000 0.00 0.00 0.00 3.02
296 2768 3.749954 GCATCCAACCTCATAGCCTTCAT 60.750 47.826 0.00 0.00 0.00 2.57
297 2769 4.505566 GCATCCAACCTCATAGCCTTCATA 60.506 45.833 0.00 0.00 0.00 2.15
306 2778 3.969976 TCATAGCCTTCATAGGTGCTCTT 59.030 43.478 0.00 0.00 44.00 2.85
311 2783 3.620966 GCCTTCATAGGTGCTCTTCAAGT 60.621 47.826 0.00 0.00 44.00 3.16
318 2790 2.618709 AGGTGCTCTTCAAGTTTTTCCG 59.381 45.455 0.00 0.00 0.00 4.30
342 2814 1.062364 TCCATCCATCCAGATCCAGC 58.938 55.000 0.00 0.00 0.00 4.85
352 2824 2.821969 TCCAGATCCAGCAAAGAAAAGC 59.178 45.455 0.00 0.00 0.00 3.51
353 2825 2.094338 CCAGATCCAGCAAAGAAAAGCC 60.094 50.000 0.00 0.00 0.00 4.35
354 2826 2.094338 CAGATCCAGCAAAGAAAAGCCC 60.094 50.000 0.00 0.00 0.00 5.19
355 2827 1.205655 GATCCAGCAAAGAAAAGCCCC 59.794 52.381 0.00 0.00 0.00 5.80
356 2828 0.831711 TCCAGCAAAGAAAAGCCCCC 60.832 55.000 0.00 0.00 0.00 5.40
406 2878 0.035176 TCAACCCCTTACGAAACCCG 59.965 55.000 0.00 0.00 45.44 5.28
407 2879 0.956902 CAACCCCTTACGAAACCCGG 60.957 60.000 0.00 0.00 43.93 5.73
408 2880 2.128290 AACCCCTTACGAAACCCGGG 62.128 60.000 22.25 22.25 43.93 5.73
409 2881 2.292559 CCCCTTACGAAACCCGGGA 61.293 63.158 32.02 0.00 43.93 5.14
410 2882 1.219935 CCCTTACGAAACCCGGGAG 59.780 63.158 32.02 17.59 43.93 4.30
411 2883 1.259840 CCCTTACGAAACCCGGGAGA 61.260 60.000 32.02 1.59 43.93 3.71
412 2884 0.609662 CCTTACGAAACCCGGGAGAA 59.390 55.000 32.02 10.20 43.93 2.87
413 2885 1.208776 CCTTACGAAACCCGGGAGAAT 59.791 52.381 32.02 9.94 43.93 2.40
414 2886 2.431782 CCTTACGAAACCCGGGAGAATA 59.568 50.000 32.02 9.88 43.93 1.75
415 2887 3.070590 CCTTACGAAACCCGGGAGAATAT 59.929 47.826 32.02 10.41 43.93 1.28
416 2888 4.443881 CCTTACGAAACCCGGGAGAATATT 60.444 45.833 32.02 6.74 43.93 1.28
417 2889 3.639672 ACGAAACCCGGGAGAATATTT 57.360 42.857 32.02 16.60 43.93 1.40
418 2890 3.275999 ACGAAACCCGGGAGAATATTTG 58.724 45.455 32.02 16.62 43.93 2.32
419 2891 2.616842 CGAAACCCGGGAGAATATTTGG 59.383 50.000 32.02 13.55 33.91 3.28
420 2892 3.628008 GAAACCCGGGAGAATATTTGGT 58.372 45.455 32.02 0.00 0.00 3.67
421 2893 2.729028 ACCCGGGAGAATATTTGGTG 57.271 50.000 32.02 0.00 0.00 4.17
422 2894 1.318576 CCCGGGAGAATATTTGGTGC 58.681 55.000 18.48 0.00 0.00 5.01
423 2895 1.133792 CCCGGGAGAATATTTGGTGCT 60.134 52.381 18.48 0.00 0.00 4.40
424 2896 2.654863 CCGGGAGAATATTTGGTGCTT 58.345 47.619 0.00 0.00 0.00 3.91
425 2897 2.618709 CCGGGAGAATATTTGGTGCTTC 59.381 50.000 0.00 0.00 0.00 3.86
426 2898 2.618709 CGGGAGAATATTTGGTGCTTCC 59.381 50.000 0.00 0.00 0.00 3.46
427 2899 3.631250 GGGAGAATATTTGGTGCTTCCA 58.369 45.455 0.00 0.00 45.60 3.53
428 2900 4.218312 GGGAGAATATTTGGTGCTTCCAT 58.782 43.478 2.36 0.00 46.60 3.41
429 2901 5.385198 GGGAGAATATTTGGTGCTTCCATA 58.615 41.667 2.36 0.00 46.60 2.74
430 2902 5.241728 GGGAGAATATTTGGTGCTTCCATAC 59.758 44.000 2.36 0.00 46.60 2.39
431 2903 6.064717 GGAGAATATTTGGTGCTTCCATACT 58.935 40.000 2.36 0.00 46.60 2.12
432 2904 6.205658 GGAGAATATTTGGTGCTTCCATACTC 59.794 42.308 2.36 0.00 46.60 2.59
433 2905 6.064717 AGAATATTTGGTGCTTCCATACTCC 58.935 40.000 2.36 0.00 46.60 3.85
434 2906 3.737559 ATTTGGTGCTTCCATACTCCA 57.262 42.857 2.36 0.00 46.60 3.86
435 2907 3.517296 TTTGGTGCTTCCATACTCCAA 57.483 42.857 2.36 0.00 46.60 3.53
436 2908 3.517296 TTGGTGCTTCCATACTCCAAA 57.483 42.857 2.36 0.00 46.60 3.28
437 2909 3.737559 TGGTGCTTCCATACTCCAAAT 57.262 42.857 0.00 0.00 41.93 2.32
438 2910 4.046286 TGGTGCTTCCATACTCCAAATT 57.954 40.909 0.00 0.00 41.93 1.82
439 2911 4.415596 TGGTGCTTCCATACTCCAAATTT 58.584 39.130 0.00 0.00 41.93 1.82
440 2912 4.837860 TGGTGCTTCCATACTCCAAATTTT 59.162 37.500 0.00 0.00 41.93 1.82
441 2913 5.047377 TGGTGCTTCCATACTCCAAATTTTC 60.047 40.000 0.00 0.00 41.93 2.29
442 2914 5.047377 GGTGCTTCCATACTCCAAATTTTCA 60.047 40.000 0.00 0.00 35.97 2.69
443 2915 6.454795 GTGCTTCCATACTCCAAATTTTCAA 58.545 36.000 0.00 0.00 0.00 2.69
444 2916 6.928492 GTGCTTCCATACTCCAAATTTTCAAA 59.072 34.615 0.00 0.00 0.00 2.69
445 2917 7.440856 GTGCTTCCATACTCCAAATTTTCAAAA 59.559 33.333 0.00 0.00 0.00 2.44
446 2918 8.156165 TGCTTCCATACTCCAAATTTTCAAAAT 58.844 29.630 0.00 0.00 0.00 1.82
447 2919 8.445493 GCTTCCATACTCCAAATTTTCAAAATG 58.555 33.333 0.00 0.00 0.00 2.32
448 2920 7.903995 TCCATACTCCAAATTTTCAAAATGC 57.096 32.000 0.00 0.00 0.00 3.56
449 2921 7.448420 TCCATACTCCAAATTTTCAAAATGCA 58.552 30.769 0.00 0.00 0.00 3.96
450 2922 8.102047 TCCATACTCCAAATTTTCAAAATGCAT 58.898 29.630 0.00 0.00 0.00 3.96
451 2923 9.381033 CCATACTCCAAATTTTCAAAATGCATA 57.619 29.630 0.00 0.00 0.00 3.14
453 2925 7.368480 ACTCCAAATTTTCAAAATGCATAGC 57.632 32.000 0.00 0.00 0.00 2.97
454 2926 7.163441 ACTCCAAATTTTCAAAATGCATAGCT 58.837 30.769 0.00 0.00 0.00 3.32
455 2927 8.313292 ACTCCAAATTTTCAAAATGCATAGCTA 58.687 29.630 0.00 0.00 0.00 3.32
456 2928 9.153721 CTCCAAATTTTCAAAATGCATAGCTAA 57.846 29.630 0.00 0.00 0.00 3.09
457 2929 9.499479 TCCAAATTTTCAAAATGCATAGCTAAA 57.501 25.926 0.00 0.00 0.00 1.85
464 2936 9.486497 TTTCAAAATGCATAGCTAAATGTTTCA 57.514 25.926 0.00 0.00 0.00 2.69
465 2937 9.486497 TTCAAAATGCATAGCTAAATGTTTCAA 57.514 25.926 0.00 0.00 0.00 2.69
466 2938 9.486497 TCAAAATGCATAGCTAAATGTTTCAAA 57.514 25.926 0.00 0.00 0.00 2.69
511 2983 6.874288 TGTTCACATCACATGATTGTACAA 57.126 33.333 11.41 11.41 33.76 2.41
512 2984 7.269477 TGTTCACATCACATGATTGTACAAA 57.731 32.000 13.23 0.00 33.76 2.83
513 2985 7.138081 TGTTCACATCACATGATTGTACAAAC 58.862 34.615 13.23 10.82 33.76 2.93
514 2986 6.252967 TCACATCACATGATTGTACAAACC 57.747 37.500 13.23 8.29 33.76 3.27
515 2987 5.182950 TCACATCACATGATTGTACAAACCC 59.817 40.000 13.23 5.79 33.76 4.11
516 2988 5.183713 CACATCACATGATTGTACAAACCCT 59.816 40.000 13.23 0.00 33.76 4.34
517 2989 6.374053 CACATCACATGATTGTACAAACCCTA 59.626 38.462 13.23 0.00 33.76 3.53
518 2990 6.945435 ACATCACATGATTGTACAAACCCTAA 59.055 34.615 13.23 0.00 33.76 2.69
519 2991 7.450014 ACATCACATGATTGTACAAACCCTAAA 59.550 33.333 13.23 0.00 33.76 1.85
520 2992 7.825331 TCACATGATTGTACAAACCCTAAAA 57.175 32.000 13.23 0.00 33.76 1.52
521 2993 8.239038 TCACATGATTGTACAAACCCTAAAAA 57.761 30.769 13.23 0.00 33.76 1.94
547 3019 9.743057 AATTCAAATCAAAATTCGAAGTACACA 57.257 25.926 3.35 0.00 0.00 3.72
548 3020 9.912634 ATTCAAATCAAAATTCGAAGTACACAT 57.087 25.926 3.35 0.00 0.00 3.21
549 3021 9.743057 TTCAAATCAAAATTCGAAGTACACATT 57.257 25.926 3.35 0.00 0.00 2.71
550 3022 9.179552 TCAAATCAAAATTCGAAGTACACATTG 57.820 29.630 3.35 2.29 0.00 2.82
551 3023 9.179552 CAAATCAAAATTCGAAGTACACATTGA 57.820 29.630 10.86 10.86 0.00 2.57
552 3024 8.955061 AATCAAAATTCGAAGTACACATTGAG 57.045 30.769 13.14 0.00 0.00 3.02
553 3025 7.722795 TCAAAATTCGAAGTACACATTGAGA 57.277 32.000 3.35 0.00 0.00 3.27
554 3026 8.148807 TCAAAATTCGAAGTACACATTGAGAA 57.851 30.769 3.35 0.00 0.00 2.87
555 3027 8.616942 TCAAAATTCGAAGTACACATTGAGAAA 58.383 29.630 3.35 0.00 0.00 2.52
556 3028 8.682016 CAAAATTCGAAGTACACATTGAGAAAC 58.318 33.333 3.35 0.00 0.00 2.78
557 3029 7.490962 AATTCGAAGTACACATTGAGAAACA 57.509 32.000 3.35 0.00 0.00 2.83
558 3030 6.912203 TTCGAAGTACACATTGAGAAACAA 57.088 33.333 0.00 0.00 42.95 2.83
559 3031 6.912203 TCGAAGTACACATTGAGAAACAAA 57.088 33.333 0.00 0.00 42.03 2.83
560 3032 7.310072 TCGAAGTACACATTGAGAAACAAAA 57.690 32.000 0.00 0.00 42.03 2.44
561 3033 7.406553 TCGAAGTACACATTGAGAAACAAAAG 58.593 34.615 0.00 0.00 42.03 2.27
562 3034 7.279090 TCGAAGTACACATTGAGAAACAAAAGA 59.721 33.333 0.00 0.00 42.03 2.52
563 3035 7.584123 CGAAGTACACATTGAGAAACAAAAGAG 59.416 37.037 0.00 0.00 42.03 2.85
564 3036 8.506168 AAGTACACATTGAGAAACAAAAGAGA 57.494 30.769 0.00 0.00 42.03 3.10
565 3037 7.920738 AGTACACATTGAGAAACAAAAGAGAC 58.079 34.615 0.00 0.00 42.03 3.36
566 3038 6.757897 ACACATTGAGAAACAAAAGAGACA 57.242 33.333 0.00 0.00 42.03 3.41
567 3039 7.156876 ACACATTGAGAAACAAAAGAGACAA 57.843 32.000 0.00 0.00 42.03 3.18
568 3040 7.601856 ACACATTGAGAAACAAAAGAGACAAA 58.398 30.769 0.00 0.00 42.03 2.83
569 3041 8.253113 ACACATTGAGAAACAAAAGAGACAAAT 58.747 29.630 0.00 0.00 42.03 2.32
570 3042 8.749499 CACATTGAGAAACAAAAGAGACAAATC 58.251 33.333 0.00 0.00 42.03 2.17
571 3043 7.922811 ACATTGAGAAACAAAAGAGACAAATCC 59.077 33.333 0.00 0.00 42.03 3.01
572 3044 7.403312 TTGAGAAACAAAAGAGACAAATCCA 57.597 32.000 0.00 0.00 35.39 3.41
573 3045 7.031226 TGAGAAACAAAAGAGACAAATCCAG 57.969 36.000 0.00 0.00 0.00 3.86
574 3046 6.603201 TGAGAAACAAAAGAGACAAATCCAGT 59.397 34.615 0.00 0.00 0.00 4.00
575 3047 7.773224 TGAGAAACAAAAGAGACAAATCCAGTA 59.227 33.333 0.00 0.00 0.00 2.74
576 3048 8.697507 AGAAACAAAAGAGACAAATCCAGTAT 57.302 30.769 0.00 0.00 0.00 2.12
577 3049 8.571336 AGAAACAAAAGAGACAAATCCAGTATG 58.429 33.333 0.00 0.00 0.00 2.39
578 3050 8.463930 AAACAAAAGAGACAAATCCAGTATGA 57.536 30.769 0.00 0.00 39.69 2.15
579 3051 8.463930 AACAAAAGAGACAAATCCAGTATGAA 57.536 30.769 0.00 0.00 39.69 2.57
580 3052 8.641498 ACAAAAGAGACAAATCCAGTATGAAT 57.359 30.769 0.00 0.00 39.69 2.57
581 3053 8.517878 ACAAAAGAGACAAATCCAGTATGAATG 58.482 33.333 0.00 0.00 39.69 2.67
582 3054 8.517878 CAAAAGAGACAAATCCAGTATGAATGT 58.482 33.333 0.00 0.00 39.69 2.71
583 3055 8.641498 AAAGAGACAAATCCAGTATGAATGTT 57.359 30.769 0.00 0.00 39.69 2.71
584 3056 8.641498 AAGAGACAAATCCAGTATGAATGTTT 57.359 30.769 0.00 0.00 39.69 2.83
585 3057 8.641498 AGAGACAAATCCAGTATGAATGTTTT 57.359 30.769 0.00 0.00 39.69 2.43
586 3058 8.517878 AGAGACAAATCCAGTATGAATGTTTTG 58.482 33.333 0.00 0.00 39.69 2.44
587 3059 7.092716 AGACAAATCCAGTATGAATGTTTTGC 58.907 34.615 0.00 0.00 39.69 3.68
588 3060 6.757237 ACAAATCCAGTATGAATGTTTTGCA 58.243 32.000 0.00 0.00 39.69 4.08
589 3061 6.869913 ACAAATCCAGTATGAATGTTTTGCAG 59.130 34.615 0.00 0.00 39.69 4.41
590 3062 6.839124 AATCCAGTATGAATGTTTTGCAGA 57.161 33.333 0.00 0.00 39.69 4.26
591 3063 6.839124 ATCCAGTATGAATGTTTTGCAGAA 57.161 33.333 0.00 0.00 39.69 3.02
592 3064 6.647334 TCCAGTATGAATGTTTTGCAGAAA 57.353 33.333 0.00 0.00 39.69 2.52
593 3065 7.048629 TCCAGTATGAATGTTTTGCAGAAAA 57.951 32.000 0.00 0.00 39.69 2.29
594 3066 6.922957 TCCAGTATGAATGTTTTGCAGAAAAC 59.077 34.615 7.00 7.00 44.55 2.43
595 3067 6.129115 CCAGTATGAATGTTTTGCAGAAAACG 60.129 38.462 8.96 0.00 46.00 3.60
597 3069 7.357532 CAGTATGAATGTTTTGCAGAAAACGTC 60.358 37.037 8.74 8.97 46.21 4.34
601 3073 2.869897 GTTTTGCAGAAAACGTCACCA 58.130 42.857 0.00 0.00 41.12 4.17
602 3074 3.246619 GTTTTGCAGAAAACGTCACCAA 58.753 40.909 0.00 0.00 41.12 3.67
603 3075 2.553079 TTGCAGAAAACGTCACCAAC 57.447 45.000 0.00 0.00 0.00 3.77
604 3076 1.454201 TGCAGAAAACGTCACCAACA 58.546 45.000 0.00 0.00 0.00 3.33
605 3077 2.020720 TGCAGAAAACGTCACCAACAT 58.979 42.857 0.00 0.00 0.00 2.71
606 3078 2.425312 TGCAGAAAACGTCACCAACATT 59.575 40.909 0.00 0.00 0.00 2.71
607 3079 3.628032 TGCAGAAAACGTCACCAACATTA 59.372 39.130 0.00 0.00 0.00 1.90
608 3080 3.972502 GCAGAAAACGTCACCAACATTAC 59.027 43.478 0.00 0.00 0.00 1.89
609 3081 4.208355 CAGAAAACGTCACCAACATTACG 58.792 43.478 0.00 0.00 40.99 3.18
610 3082 3.249080 AGAAAACGTCACCAACATTACGG 59.751 43.478 0.00 0.00 39.57 4.02
611 3083 2.529780 AACGTCACCAACATTACGGA 57.470 45.000 0.00 0.00 39.57 4.69
612 3084 2.529780 ACGTCACCAACATTACGGAA 57.470 45.000 0.00 0.00 39.57 4.30
613 3085 2.836262 ACGTCACCAACATTACGGAAA 58.164 42.857 0.00 0.00 39.57 3.13
614 3086 3.404899 ACGTCACCAACATTACGGAAAT 58.595 40.909 0.00 0.00 39.57 2.17
616 3088 3.433957 CGTCACCAACATTACGGAAATGA 59.566 43.478 16.76 0.00 46.81 2.57
617 3089 4.668177 CGTCACCAACATTACGGAAATGAC 60.668 45.833 16.76 8.35 46.81 3.06
618 3090 3.433957 TCACCAACATTACGGAAATGACG 59.566 43.478 16.76 8.61 46.81 4.35
619 3091 2.160813 ACCAACATTACGGAAATGACGC 59.839 45.455 16.76 0.00 46.81 5.19
620 3092 2.418628 CCAACATTACGGAAATGACGCT 59.581 45.455 16.76 0.00 46.81 5.07
621 3093 3.119990 CCAACATTACGGAAATGACGCTT 60.120 43.478 16.76 1.59 46.81 4.68
622 3094 4.472286 CAACATTACGGAAATGACGCTTT 58.528 39.130 16.76 1.30 46.81 3.51
623 3095 4.078363 ACATTACGGAAATGACGCTTTG 57.922 40.909 16.76 0.00 46.81 2.77
624 3096 3.119990 ACATTACGGAAATGACGCTTTGG 60.120 43.478 16.76 0.00 46.81 3.28
625 3097 2.172851 TACGGAAATGACGCTTTGGT 57.827 45.000 0.00 0.00 34.00 3.67
626 3098 0.872388 ACGGAAATGACGCTTTGGTC 59.128 50.000 0.00 0.00 37.45 4.02
627 3099 0.168128 CGGAAATGACGCTTTGGTCC 59.832 55.000 0.00 0.00 36.07 4.46
628 3100 1.243902 GGAAATGACGCTTTGGTCCA 58.756 50.000 0.00 0.00 36.07 4.02
629 3101 1.068541 GGAAATGACGCTTTGGTCCAC 60.069 52.381 0.00 0.00 36.07 4.02
630 3102 1.606668 GAAATGACGCTTTGGTCCACA 59.393 47.619 0.00 0.00 36.07 4.17
631 3103 1.909700 AATGACGCTTTGGTCCACAT 58.090 45.000 0.00 0.00 36.07 3.21
632 3104 1.453155 ATGACGCTTTGGTCCACATC 58.547 50.000 0.00 0.00 36.07 3.06
633 3105 0.605319 TGACGCTTTGGTCCACATCC 60.605 55.000 0.00 0.00 36.07 3.51
634 3106 0.321653 GACGCTTTGGTCCACATCCT 60.322 55.000 0.00 0.00 0.00 3.24
635 3107 0.606401 ACGCTTTGGTCCACATCCTG 60.606 55.000 0.00 0.00 0.00 3.86
636 3108 1.885871 GCTTTGGTCCACATCCTGC 59.114 57.895 0.00 0.00 0.00 4.85
637 3109 1.598701 GCTTTGGTCCACATCCTGCC 61.599 60.000 0.00 0.00 0.00 4.85
638 3110 0.967380 CTTTGGTCCACATCCTGCCC 60.967 60.000 0.00 0.00 0.00 5.36
639 3111 1.724148 TTTGGTCCACATCCTGCCCA 61.724 55.000 0.00 0.00 0.00 5.36
640 3112 1.508667 TTGGTCCACATCCTGCCCAT 61.509 55.000 0.00 0.00 0.00 4.00
641 3113 1.307647 GGTCCACATCCTGCCCATT 59.692 57.895 0.00 0.00 0.00 3.16
642 3114 1.039233 GGTCCACATCCTGCCCATTG 61.039 60.000 0.00 0.00 0.00 2.82
643 3115 1.039233 GTCCACATCCTGCCCATTGG 61.039 60.000 0.00 0.00 0.00 3.16
644 3116 1.213619 TCCACATCCTGCCCATTGGA 61.214 55.000 3.62 0.00 36.72 3.53
645 3117 0.105862 CCACATCCTGCCCATTGGAT 60.106 55.000 3.62 0.00 43.23 3.41
646 3118 1.325355 CACATCCTGCCCATTGGATC 58.675 55.000 3.62 0.00 40.76 3.36
647 3119 0.179009 ACATCCTGCCCATTGGATCG 60.179 55.000 3.62 0.00 40.76 3.69
648 3120 1.228367 ATCCTGCCCATTGGATCGC 60.228 57.895 3.62 0.00 38.60 4.58
649 3121 3.282157 CCTGCCCATTGGATCGCG 61.282 66.667 3.62 0.00 0.00 5.87
650 3122 2.203056 CTGCCCATTGGATCGCGA 60.203 61.111 13.09 13.09 0.00 5.87
651 3123 1.598962 CTGCCCATTGGATCGCGAT 60.599 57.895 23.97 23.97 0.00 4.58
652 3124 1.572085 CTGCCCATTGGATCGCGATC 61.572 60.000 35.42 35.42 37.11 3.69
660 3132 3.338676 GATCGCGATCCAACGGCC 61.339 66.667 33.80 10.92 31.76 6.13
664 3136 4.508128 GCGATCCAACGGCCGAGA 62.508 66.667 35.90 24.79 0.00 4.04
665 3137 2.417516 CGATCCAACGGCCGAGAT 59.582 61.111 35.90 28.22 0.00 2.75
666 3138 1.661821 CGATCCAACGGCCGAGATC 60.662 63.158 35.90 32.22 33.34 2.75
667 3139 1.661821 GATCCAACGGCCGAGATCG 60.662 63.158 35.90 14.33 39.44 3.69
668 3140 3.792053 ATCCAACGGCCGAGATCGC 62.792 63.158 35.90 0.00 38.18 4.58
669 3141 4.812476 CCAACGGCCGAGATCGCA 62.812 66.667 35.90 0.00 38.18 5.10
670 3142 2.586079 CAACGGCCGAGATCGCAT 60.586 61.111 35.90 2.60 38.18 4.73
671 3143 2.279517 AACGGCCGAGATCGCATC 60.280 61.111 35.90 0.00 38.18 3.91
672 3144 4.630785 ACGGCCGAGATCGCATCG 62.631 66.667 35.90 0.00 39.86 3.84
673 3145 4.630785 CGGCCGAGATCGCATCGT 62.631 66.667 24.07 0.00 38.50 3.73
674 3146 2.643272 GGCCGAGATCGCATCGTA 59.357 61.111 0.00 0.00 38.50 3.43
675 3147 1.442857 GGCCGAGATCGCATCGTAG 60.443 63.158 0.00 0.00 38.50 3.51
676 3148 2.083522 GCCGAGATCGCATCGTAGC 61.084 63.158 0.00 0.00 38.50 3.58
677 3149 1.282875 CCGAGATCGCATCGTAGCA 59.717 57.895 0.00 0.00 38.50 3.49
678 3150 0.999228 CCGAGATCGCATCGTAGCAC 60.999 60.000 0.00 0.00 38.50 4.40
679 3151 0.999228 CGAGATCGCATCGTAGCACC 60.999 60.000 0.00 0.00 35.48 5.01
680 3152 0.312416 GAGATCGCATCGTAGCACCT 59.688 55.000 0.00 0.00 0.00 4.00
681 3153 1.535896 GAGATCGCATCGTAGCACCTA 59.464 52.381 0.00 0.00 0.00 3.08
682 3154 1.954382 AGATCGCATCGTAGCACCTAA 59.046 47.619 3.09 0.00 0.00 2.69
683 3155 2.030717 AGATCGCATCGTAGCACCTAAG 60.031 50.000 3.09 0.00 0.00 2.18
684 3156 0.248907 TCGCATCGTAGCACCTAAGC 60.249 55.000 3.09 0.00 0.00 3.09
685 3157 1.215655 CGCATCGTAGCACCTAAGCC 61.216 60.000 3.09 0.00 34.23 4.35
686 3158 0.105039 GCATCGTAGCACCTAAGCCT 59.895 55.000 0.00 0.00 34.23 4.58
687 3159 1.858091 CATCGTAGCACCTAAGCCTG 58.142 55.000 0.00 0.00 34.23 4.85
688 3160 0.753262 ATCGTAGCACCTAAGCCTGG 59.247 55.000 0.00 0.00 34.23 4.45
689 3161 0.613853 TCGTAGCACCTAAGCCTGGT 60.614 55.000 0.00 0.00 38.53 4.00
715 3187 2.050144 TGGAGCACCAGATATTCTCCC 58.950 52.381 0.00 0.00 41.90 4.30
716 3188 2.334023 GGAGCACCAGATATTCTCCCT 58.666 52.381 0.00 0.00 37.85 4.20
717 3189 3.116746 TGGAGCACCAGATATTCTCCCTA 60.117 47.826 0.00 0.00 41.90 3.53
718 3190 3.259625 GGAGCACCAGATATTCTCCCTAC 59.740 52.174 0.00 0.00 37.85 3.18
719 3191 2.894126 AGCACCAGATATTCTCCCTACG 59.106 50.000 0.00 0.00 0.00 3.51
720 3192 2.891580 GCACCAGATATTCTCCCTACGA 59.108 50.000 0.00 0.00 0.00 3.43
721 3193 3.321111 GCACCAGATATTCTCCCTACGAA 59.679 47.826 0.00 0.00 0.00 3.85
722 3194 4.202223 GCACCAGATATTCTCCCTACGAAA 60.202 45.833 0.00 0.00 0.00 3.46
723 3195 5.290386 CACCAGATATTCTCCCTACGAAAC 58.710 45.833 0.00 0.00 0.00 2.78
724 3196 4.344390 ACCAGATATTCTCCCTACGAAACC 59.656 45.833 0.00 0.00 0.00 3.27
725 3197 4.262506 CCAGATATTCTCCCTACGAAACCC 60.263 50.000 0.00 0.00 0.00 4.11
733 3205 1.508088 CTACGAAACCCTACCGCGT 59.492 57.895 4.92 0.00 38.81 6.01
742 3214 3.760035 CTACCGCGTGCACCCTCT 61.760 66.667 12.15 0.00 0.00 3.69
748 3220 2.651361 CGTGCACCCTCTTCTCGT 59.349 61.111 12.15 0.00 0.00 4.18
772 3244 0.040351 CAGTCTCCCACCCTCTCTGA 59.960 60.000 0.00 0.00 0.00 3.27
984 3463 1.597027 CGTCTGTCCGCCCTTGTTT 60.597 57.895 0.00 0.00 0.00 2.83
1089 3568 2.429610 TCGAGGGTATACTTCTGCAACC 59.570 50.000 2.25 0.00 0.00 3.77
1203 3682 7.891782 TGAATCTTATTAAACAACTACGCGAG 58.108 34.615 15.93 8.73 0.00 5.03
1298 3778 2.985896 TCTTATTGCTTTAGGCGCAGT 58.014 42.857 10.83 0.00 45.43 4.40
1347 3827 5.640147 TCCATTCTTATCCCAGTTTGTTGT 58.360 37.500 0.00 0.00 0.00 3.32
1367 3847 4.464008 TGTTTTCTTTCAGAGGATGCACT 58.536 39.130 0.00 0.00 0.00 4.40
1389 3869 5.788014 ACTGAAGGATCTAAGGAAAAGAGGT 59.212 40.000 0.00 0.00 0.00 3.85
1546 4026 2.642171 TCTGGTTGGTATCACCCTCT 57.358 50.000 0.00 0.00 37.50 3.69
1561 4041 3.758023 CACCCTCTGCAACATGATTTGTA 59.242 43.478 0.00 0.00 37.68 2.41
1614 4158 1.349357 AGTGAGAGGCAAGGTCCTTTC 59.651 52.381 0.00 0.00 37.73 2.62
1771 4321 8.391106 CCGATTTTAAGATCTCAGACGATTTTT 58.609 33.333 0.00 0.00 0.00 1.94
1779 4329 7.475840 AGATCTCAGACGATTTTTAAATTGGC 58.524 34.615 7.23 4.21 37.97 4.52
1785 4335 5.476945 AGACGATTTTTAAATTGGCAGTCCT 59.523 36.000 10.22 0.00 39.80 3.85
1811 4363 6.662865 TTTTGGATGGTAGAAAATCAAGCA 57.337 33.333 0.00 0.00 0.00 3.91
1904 4571 1.065854 GTGTGAGGGGAGTTGGATGAG 60.066 57.143 0.00 0.00 0.00 2.90
2048 4721 6.198966 CCAACTTCAAACTCTGTTGTAATTGC 59.801 38.462 0.00 0.00 38.35 3.56
2055 4728 7.862372 TCAAACTCTGTTGTAATTGCATTCTTC 59.138 33.333 0.00 0.00 0.00 2.87
2123 4796 9.784531 AACTTCTGGTATCATATTGGAGTATTG 57.215 33.333 0.00 0.00 0.00 1.90
2333 5006 3.253921 GGTGCGTAATTACCTGTTGGTTT 59.746 43.478 10.01 0.00 46.05 3.27
2393 5066 3.681034 GCTGAGCAGTTCCAGTACATGAT 60.681 47.826 0.00 0.00 33.19 2.45
2395 5068 5.011090 TGAGCAGTTCCAGTACATGATAC 57.989 43.478 0.00 0.00 0.00 2.24
2715 5395 6.757897 TTTGTAGATATTGGCAAGAGTTGG 57.242 37.500 5.96 0.00 0.00 3.77
2806 5486 2.158971 GGGTTTGCAACACCAACAGAAT 60.159 45.455 23.39 0.00 35.80 2.40
2808 5488 4.442192 GGGTTTGCAACACCAACAGAATTA 60.442 41.667 23.39 0.00 35.80 1.40
2896 5577 7.790027 ACTTTGTGAATCTATGCTGAGACTAT 58.210 34.615 0.00 0.00 0.00 2.12
2902 5583 8.887717 GTGAATCTATGCTGAGACTATTTTGTT 58.112 33.333 0.00 0.00 0.00 2.83
3036 6566 9.554724 GCATCTGAAACGAAATGAAATTACTTA 57.445 29.630 0.00 0.00 33.67 2.24
3113 6643 7.387643 ACAATTAGGTACCTCTTTCTCAGTTC 58.612 38.462 20.32 0.00 0.00 3.01
3122 6652 4.493547 CTCTTTCTCAGTTCTAGTGCCTG 58.506 47.826 0.00 0.00 0.00 4.85
3217 6759 4.470334 TGATGTGTCTGCAATACAGCTA 57.530 40.909 12.22 0.70 46.76 3.32
3520 7069 4.458989 TGTCAAGTTTTATCCAGACCATGC 59.541 41.667 0.00 0.00 0.00 4.06
3663 7212 9.987272 TCTTTGTAGACAACTGGATATCATATG 57.013 33.333 4.83 0.00 35.28 1.78
3688 7237 8.194104 TGCAGTACTGTGTATTTTGTTCAAAAT 58.806 29.630 23.44 21.59 36.45 1.82
3689 7238 9.672086 GCAGTACTGTGTATTTTGTTCAAAATA 57.328 29.630 23.44 20.00 34.51 1.40
3744 7293 2.903784 TGTAGCAGGAGACAAGCCTTAA 59.096 45.455 0.00 0.00 32.12 1.85
3759 7308 6.209391 ACAAGCCTTAATTTACTGTTGCAGAT 59.791 34.615 2.91 0.00 35.18 2.90
3760 7309 7.393234 ACAAGCCTTAATTTACTGTTGCAGATA 59.607 33.333 2.91 0.00 35.18 1.98
3819 7371 9.979578 ACTGATAAATTGCAATTTCAACAACTA 57.020 25.926 34.40 18.63 39.24 2.24
3821 7373 9.979578 TGATAAATTGCAATTTCAACAACTACT 57.020 25.926 34.40 13.82 39.24 2.57
3824 7376 8.579682 AAATTGCAATTTCAACAACTACTCTC 57.420 30.769 27.73 0.00 33.54 3.20
3840 7392 7.154435 ACTACTCTCGAATTTTGTACTAGCA 57.846 36.000 0.00 0.00 0.00 3.49
3841 7393 7.251994 ACTACTCTCGAATTTTGTACTAGCAG 58.748 38.462 0.00 0.00 0.00 4.24
4042 7596 4.555262 CTTTGGATAAACGGCACATTTGT 58.445 39.130 0.00 0.00 0.00 2.83
4046 7600 2.690173 TAAACGGCACATTTGTTCGG 57.310 45.000 7.72 0.00 0.00 4.30
4053 7607 2.384382 GCACATTTGTTCGGTCACTTG 58.616 47.619 0.00 0.00 0.00 3.16
4198 7759 6.880942 ATTGTTGCAGCAAAACCATTATTT 57.119 29.167 20.20 0.00 31.63 1.40
4413 10536 6.089249 CCATCAGCTGGTTCTTAAGTTTTT 57.911 37.500 15.13 0.00 40.49 1.94
4442 10565 7.533561 CCATTTTGACAGAACAAACAAAACAAC 59.466 33.333 0.00 0.00 42.24 3.32
4472 10604 6.697641 AAGTAGGGAATGACTAAGGAAACA 57.302 37.500 0.00 0.00 0.00 2.83
4494 10626 2.257974 GATGCATGCATCGCCATAAG 57.742 50.000 37.33 0.00 42.55 1.73
4495 10627 1.808343 GATGCATGCATCGCCATAAGA 59.192 47.619 37.33 6.66 42.55 2.10
4496 10628 1.900245 TGCATGCATCGCCATAAGAT 58.100 45.000 18.46 0.00 0.00 2.40
4497 10629 2.232399 TGCATGCATCGCCATAAGATT 58.768 42.857 18.46 0.00 0.00 2.40
4498 10630 2.624364 TGCATGCATCGCCATAAGATTT 59.376 40.909 18.46 0.00 0.00 2.17
4499 10631 3.068448 TGCATGCATCGCCATAAGATTTT 59.932 39.130 18.46 0.00 0.00 1.82
4500 10632 3.427528 GCATGCATCGCCATAAGATTTTG 59.572 43.478 14.21 0.00 0.00 2.44
4501 10633 3.713858 TGCATCGCCATAAGATTTTGG 57.286 42.857 0.00 0.00 36.03 3.28
4502 10634 3.286353 TGCATCGCCATAAGATTTTGGA 58.714 40.909 6.27 0.00 34.81 3.53
4503 10635 3.890756 TGCATCGCCATAAGATTTTGGAT 59.109 39.130 6.27 0.00 34.81 3.41
4504 10636 4.341806 TGCATCGCCATAAGATTTTGGATT 59.658 37.500 6.27 0.00 34.81 3.01
4505 10637 4.682860 GCATCGCCATAAGATTTTGGATTG 59.317 41.667 6.27 2.07 34.81 2.67
4506 10638 4.305989 TCGCCATAAGATTTTGGATTGC 57.694 40.909 6.27 0.00 34.81 3.56
4507 10639 3.698539 TCGCCATAAGATTTTGGATTGCA 59.301 39.130 6.27 0.00 34.81 4.08
4508 10640 4.341806 TCGCCATAAGATTTTGGATTGCAT 59.658 37.500 6.27 0.00 34.81 3.96
4509 10641 4.682860 CGCCATAAGATTTTGGATTGCATC 59.317 41.667 6.27 0.00 34.81 3.91
4510 10642 5.603596 GCCATAAGATTTTGGATTGCATCA 58.396 37.500 6.27 0.00 34.81 3.07
4511 10643 5.464389 GCCATAAGATTTTGGATTGCATCAC 59.536 40.000 6.27 0.00 34.81 3.06
4690 10839 5.413833 ACACTGCTTATTTCCATGAGTTGAG 59.586 40.000 0.00 0.00 0.00 3.02
4924 11114 5.596772 AGCACAAACATTAAGGTAAGTTGGT 59.403 36.000 7.76 0.74 0.00 3.67
5024 11226 6.263842 AGACTCTGCTGAATGATTTGTCAAAA 59.736 34.615 1.31 0.00 0.00 2.44
5086 11288 3.766545 TGGAAGTTGGAGAAGGAATTGG 58.233 45.455 0.00 0.00 0.00 3.16
5233 11438 8.869109 TCATCCATCCAAAACAAAACTAGATTT 58.131 29.630 0.00 0.00 0.00 2.17
5449 11676 7.663081 TGATAATTAACATGGGCTCTCATCTTC 59.337 37.037 0.00 0.00 0.00 2.87
5451 11678 3.557228 AACATGGGCTCTCATCTTCTC 57.443 47.619 0.00 0.00 0.00 2.87
5527 11754 4.855531 AGATGTTGGCAAACGAGTTAAAC 58.144 39.130 0.00 0.00 39.30 2.01
5534 11761 6.132791 TGGCAAACGAGTTAAACAAACATA 57.867 33.333 0.00 0.00 40.83 2.29
5539 11766 5.352643 ACGAGTTAAACAAACATAGTGGC 57.647 39.130 0.00 0.00 40.83 5.01
5728 11957 5.501897 CGGCGTGTTATACCTTTTGATCTTC 60.502 44.000 0.00 0.00 0.00 2.87
5772 12001 1.073603 TGACACCATCAGTTGCCATGA 59.926 47.619 0.00 0.00 31.91 3.07
5773 12002 1.741706 GACACCATCAGTTGCCATGAG 59.258 52.381 0.00 0.00 0.00 2.90
5804 12033 0.962356 CATCGCCTCCCTTTTGCTGT 60.962 55.000 0.00 0.00 0.00 4.40
5813 12042 1.000060 CCCTTTTGCTGTGTGTCATGG 60.000 52.381 0.00 0.00 0.00 3.66
5816 12045 2.346766 TTTGCTGTGTGTCATGGTCT 57.653 45.000 0.00 0.00 0.00 3.85
5817 12046 1.882912 TTGCTGTGTGTCATGGTCTC 58.117 50.000 0.00 0.00 0.00 3.36
5870 12099 0.968393 AACCAAAGTGTTGCACCCGT 60.968 50.000 0.00 0.00 34.49 5.28
5871 12100 1.358759 CCAAAGTGTTGCACCCGTC 59.641 57.895 0.00 0.00 34.49 4.79
5892 12121 1.117994 TGGTTTGTGAATGCTGGCAA 58.882 45.000 0.00 0.00 0.00 4.52
5924 12155 3.991773 CACAGGAGATGCAAACAAAATGG 59.008 43.478 0.00 0.00 0.00 3.16
5927 12158 2.027837 GGAGATGCAAACAAAATGGCCT 60.028 45.455 3.32 0.00 0.00 5.19
5940 12171 0.251922 ATGGCCTTGCATTGGTGAGT 60.252 50.000 3.32 0.00 0.00 3.41
5941 12172 0.469705 TGGCCTTGCATTGGTGAGTT 60.470 50.000 3.32 0.00 0.00 3.01
5942 12173 0.681175 GGCCTTGCATTGGTGAGTTT 59.319 50.000 0.00 0.00 0.00 2.66
5943 12174 1.070601 GGCCTTGCATTGGTGAGTTTT 59.929 47.619 0.00 0.00 0.00 2.43
6035 12266 6.460781 TCTAAATTCTACTTGAAACCGCTGA 58.539 36.000 0.00 0.00 38.29 4.26
6038 12269 3.026630 TCTACTTGAAACCGCTGACAG 57.973 47.619 0.00 0.00 0.00 3.51
6052 12283 3.741075 CGCTGACAGACCTATTGGCATTA 60.741 47.826 6.65 0.00 32.07 1.90
6053 12284 4.199310 GCTGACAGACCTATTGGCATTAA 58.801 43.478 6.65 0.00 32.07 1.40
6093 12324 5.430886 TGATGAATGGACAACATCGAGAAT 58.569 37.500 13.70 0.00 41.95 2.40
6115 12346 3.611766 ACCTCCGAAAACATGTAGAGG 57.388 47.619 19.36 19.36 45.23 3.69
6164 12395 6.403309 CCCCGAATTTAAGTTCTAAGTGAAGC 60.403 42.308 8.82 0.00 35.01 3.86
6169 12400 6.877611 TTTAAGTTCTAAGTGAAGCCCTTG 57.122 37.500 0.00 0.00 35.01 3.61
6178 12409 2.893489 AGTGAAGCCCTTGGATCAAAAC 59.107 45.455 0.00 0.00 0.00 2.43
6207 12438 8.794335 AGGGAAATTCTCTTGATAAACACTAC 57.206 34.615 0.00 0.00 0.00 2.73
6209 12440 8.669243 GGGAAATTCTCTTGATAAACACTACTG 58.331 37.037 0.00 0.00 0.00 2.74
6262 12493 6.796705 AAAGTCGAGGTACAAAACAATAGG 57.203 37.500 0.00 0.00 0.00 2.57
6316 12571 0.731855 GACTTAGCACCGACCGTCAC 60.732 60.000 0.00 0.00 0.00 3.67
6321 12576 2.258591 CACCGACCGTCACCTGAG 59.741 66.667 0.00 0.00 0.00 3.35
6359 12614 9.146984 GTTTTATATTGCAATGGATCATGATGG 57.853 33.333 22.27 0.00 0.00 3.51
6364 12619 4.283337 TGCAATGGATCATGATGGTTTCT 58.717 39.130 14.30 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 7.542130 CCGAAGAATGATTCATCATATACACGA 59.458 37.037 8.03 0.00 46.22 4.35
37 38 8.539770 ACCGAAGAATGATTCATCATATACAC 57.460 34.615 8.03 0.00 46.22 2.90
51 52 3.218453 TGAAAGCCAAACCGAAGAATGA 58.782 40.909 0.00 0.00 0.00 2.57
157 159 5.555542 AGATGGGAGGTATGAGATCTAGAGT 59.444 44.000 0.00 0.00 0.00 3.24
167 169 2.965831 CCGAAGAAGATGGGAGGTATGA 59.034 50.000 0.00 0.00 0.00 2.15
202 204 3.446442 AGGAACGGAGGTAGTAAGTGA 57.554 47.619 0.00 0.00 0.00 3.41
216 218 5.605327 CAAACACGACTGTATTTAGGAACG 58.395 41.667 0.00 0.00 0.00 3.95
219 221 4.633175 TGCAAACACGACTGTATTTAGGA 58.367 39.130 0.00 0.00 0.00 2.94
251 254 6.127083 TGCTCTCATTAGTGTAATGTCATCCA 60.127 38.462 6.57 0.00 44.49 3.41
252 255 6.283694 TGCTCTCATTAGTGTAATGTCATCC 58.716 40.000 6.57 0.00 44.49 3.51
253 256 7.117523 GGATGCTCTCATTAGTGTAATGTCATC 59.882 40.741 6.57 12.25 44.49 2.92
254 257 6.933521 GGATGCTCTCATTAGTGTAATGTCAT 59.066 38.462 6.57 6.45 44.49 3.06
255 258 6.127083 TGGATGCTCTCATTAGTGTAATGTCA 60.127 38.462 6.57 2.94 44.49 3.58
257 260 6.239217 TGGATGCTCTCATTAGTGTAATGT 57.761 37.500 6.57 0.00 44.49 2.71
258 261 6.017605 GGTTGGATGCTCTCATTAGTGTAATG 60.018 42.308 0.93 0.93 45.30 1.90
260 263 5.189736 AGGTTGGATGCTCTCATTAGTGTAA 59.810 40.000 0.00 0.00 31.96 2.41
261 264 4.716784 AGGTTGGATGCTCTCATTAGTGTA 59.283 41.667 0.00 0.00 31.96 2.90
266 2738 5.512060 GCTATGAGGTTGGATGCTCTCATTA 60.512 44.000 17.57 8.12 42.30 1.90
269 2741 2.103771 GCTATGAGGTTGGATGCTCTCA 59.896 50.000 7.60 7.60 40.04 3.27
291 2763 6.566197 AAAACTTGAAGAGCACCTATGAAG 57.434 37.500 0.00 0.00 0.00 3.02
292 2764 6.016276 GGAAAAACTTGAAGAGCACCTATGAA 60.016 38.462 0.00 0.00 0.00 2.57
293 2765 5.473504 GGAAAAACTTGAAGAGCACCTATGA 59.526 40.000 0.00 0.00 0.00 2.15
294 2766 5.617751 CGGAAAAACTTGAAGAGCACCTATG 60.618 44.000 0.00 0.00 0.00 2.23
295 2767 4.455877 CGGAAAAACTTGAAGAGCACCTAT 59.544 41.667 0.00 0.00 0.00 2.57
296 2768 3.813166 CGGAAAAACTTGAAGAGCACCTA 59.187 43.478 0.00 0.00 0.00 3.08
297 2769 2.618709 CGGAAAAACTTGAAGAGCACCT 59.381 45.455 0.00 0.00 0.00 4.00
306 2778 5.105310 TGGATGGAAAAACGGAAAAACTTGA 60.105 36.000 0.00 0.00 0.00 3.02
311 2783 4.345257 TGGATGGATGGAAAAACGGAAAAA 59.655 37.500 0.00 0.00 0.00 1.94
318 2790 4.280819 TGGATCTGGATGGATGGAAAAAC 58.719 43.478 0.00 0.00 0.00 2.43
376 2848 1.152830 GGGGTTGAACCAGGAGCAA 59.847 57.895 17.27 0.00 41.02 3.91
406 2878 3.631250 TGGAAGCACCAAATATTCTCCC 58.369 45.455 0.11 0.00 46.75 4.30
418 2890 5.047377 TGAAAATTTGGAGTATGGAAGCACC 60.047 40.000 0.00 0.00 39.54 5.01
419 2891 6.024552 TGAAAATTTGGAGTATGGAAGCAC 57.975 37.500 0.00 0.00 0.00 4.40
420 2892 6.662865 TTGAAAATTTGGAGTATGGAAGCA 57.337 33.333 0.00 0.00 0.00 3.91
421 2893 7.961325 TTTTGAAAATTTGGAGTATGGAAGC 57.039 32.000 0.00 0.00 0.00 3.86
422 2894 8.445493 GCATTTTGAAAATTTGGAGTATGGAAG 58.555 33.333 0.00 0.00 0.00 3.46
423 2895 7.935755 TGCATTTTGAAAATTTGGAGTATGGAA 59.064 29.630 0.00 0.00 0.00 3.53
424 2896 7.448420 TGCATTTTGAAAATTTGGAGTATGGA 58.552 30.769 0.00 0.00 0.00 3.41
425 2897 7.670009 TGCATTTTGAAAATTTGGAGTATGG 57.330 32.000 0.00 0.00 0.00 2.74
427 2899 9.101655 GCTATGCATTTTGAAAATTTGGAGTAT 57.898 29.630 3.54 0.00 0.00 2.12
428 2900 8.313292 AGCTATGCATTTTGAAAATTTGGAGTA 58.687 29.630 3.54 0.00 0.00 2.59
429 2901 7.163441 AGCTATGCATTTTGAAAATTTGGAGT 58.837 30.769 3.54 0.00 0.00 3.85
430 2902 7.605410 AGCTATGCATTTTGAAAATTTGGAG 57.395 32.000 3.54 0.00 0.00 3.86
431 2903 9.499479 TTTAGCTATGCATTTTGAAAATTTGGA 57.501 25.926 3.54 0.00 0.00 3.53
438 2910 9.486497 TGAAACATTTAGCTATGCATTTTGAAA 57.514 25.926 3.54 1.72 0.00 2.69
439 2911 9.486497 TTGAAACATTTAGCTATGCATTTTGAA 57.514 25.926 3.54 0.00 0.00 2.69
440 2912 9.486497 TTTGAAACATTTAGCTATGCATTTTGA 57.514 25.926 3.54 0.00 0.00 2.69
487 2959 7.451501 TTGTACAATCATGTGATGTGAACAT 57.548 32.000 3.59 0.00 40.84 2.71
488 2960 6.874288 TTGTACAATCATGTGATGTGAACA 57.126 33.333 3.59 5.79 40.84 3.18
489 2961 6.582295 GGTTTGTACAATCATGTGATGTGAAC 59.418 38.462 9.56 0.00 40.84 3.18
490 2962 6.294453 GGGTTTGTACAATCATGTGATGTGAA 60.294 38.462 9.56 0.00 40.84 3.18
491 2963 5.182950 GGGTTTGTACAATCATGTGATGTGA 59.817 40.000 9.56 0.00 40.84 3.58
492 2964 5.183713 AGGGTTTGTACAATCATGTGATGTG 59.816 40.000 9.56 1.05 40.84 3.21
493 2965 5.324409 AGGGTTTGTACAATCATGTGATGT 58.676 37.500 9.56 0.00 40.84 3.06
494 2966 5.902613 AGGGTTTGTACAATCATGTGATG 57.097 39.130 9.56 0.00 40.84 3.07
495 2967 8.415950 TTTTAGGGTTTGTACAATCATGTGAT 57.584 30.769 9.56 0.00 40.84 3.06
496 2968 7.825331 TTTTAGGGTTTGTACAATCATGTGA 57.175 32.000 9.56 0.00 40.84 3.58
521 2993 9.743057 TGTGTACTTCGAATTTTGATTTGAATT 57.257 25.926 0.00 1.40 34.47 2.17
522 2994 9.912634 ATGTGTACTTCGAATTTTGATTTGAAT 57.087 25.926 0.00 0.00 34.47 2.57
523 2995 9.743057 AATGTGTACTTCGAATTTTGATTTGAA 57.257 25.926 0.00 2.75 33.99 2.69
524 2996 9.179552 CAATGTGTACTTCGAATTTTGATTTGA 57.820 29.630 0.00 0.00 0.00 2.69
525 2997 9.179552 TCAATGTGTACTTCGAATTTTGATTTG 57.820 29.630 0.00 0.00 0.00 2.32
526 2998 9.398170 CTCAATGTGTACTTCGAATTTTGATTT 57.602 29.630 0.00 0.00 0.00 2.17
527 2999 8.783093 TCTCAATGTGTACTTCGAATTTTGATT 58.217 29.630 0.00 0.00 0.00 2.57
528 3000 8.322906 TCTCAATGTGTACTTCGAATTTTGAT 57.677 30.769 0.00 0.00 0.00 2.57
529 3001 7.722795 TCTCAATGTGTACTTCGAATTTTGA 57.277 32.000 0.00 0.00 0.00 2.69
530 3002 8.682016 GTTTCTCAATGTGTACTTCGAATTTTG 58.318 33.333 0.00 0.00 0.00 2.44
531 3003 8.402472 TGTTTCTCAATGTGTACTTCGAATTTT 58.598 29.630 0.00 0.00 0.00 1.82
532 3004 7.925993 TGTTTCTCAATGTGTACTTCGAATTT 58.074 30.769 0.00 0.00 0.00 1.82
533 3005 7.490962 TGTTTCTCAATGTGTACTTCGAATT 57.509 32.000 0.00 0.00 0.00 2.17
534 3006 7.490962 TTGTTTCTCAATGTGTACTTCGAAT 57.509 32.000 0.00 0.00 0.00 3.34
535 3007 6.912203 TTGTTTCTCAATGTGTACTTCGAA 57.088 33.333 0.00 0.00 0.00 3.71
536 3008 6.912203 TTTGTTTCTCAATGTGTACTTCGA 57.088 33.333 0.00 0.00 35.84 3.71
537 3009 7.406553 TCTTTTGTTTCTCAATGTGTACTTCG 58.593 34.615 0.00 0.00 35.84 3.79
538 3010 8.612619 TCTCTTTTGTTTCTCAATGTGTACTTC 58.387 33.333 0.00 0.00 35.84 3.01
539 3011 8.398665 GTCTCTTTTGTTTCTCAATGTGTACTT 58.601 33.333 0.00 0.00 35.84 2.24
540 3012 7.552687 TGTCTCTTTTGTTTCTCAATGTGTACT 59.447 33.333 0.00 0.00 35.84 2.73
541 3013 7.693952 TGTCTCTTTTGTTTCTCAATGTGTAC 58.306 34.615 0.00 0.00 35.84 2.90
542 3014 7.857734 TGTCTCTTTTGTTTCTCAATGTGTA 57.142 32.000 0.00 0.00 35.84 2.90
543 3015 6.757897 TGTCTCTTTTGTTTCTCAATGTGT 57.242 33.333 0.00 0.00 35.84 3.72
544 3016 8.638685 ATTTGTCTCTTTTGTTTCTCAATGTG 57.361 30.769 0.00 0.00 35.84 3.21
545 3017 7.922811 GGATTTGTCTCTTTTGTTTCTCAATGT 59.077 33.333 0.00 0.00 35.84 2.71
546 3018 7.922278 TGGATTTGTCTCTTTTGTTTCTCAATG 59.078 33.333 0.00 0.00 35.84 2.82
547 3019 8.010733 TGGATTTGTCTCTTTTGTTTCTCAAT 57.989 30.769 0.00 0.00 35.84 2.57
548 3020 7.122650 ACTGGATTTGTCTCTTTTGTTTCTCAA 59.877 33.333 0.00 0.00 0.00 3.02
549 3021 6.603201 ACTGGATTTGTCTCTTTTGTTTCTCA 59.397 34.615 0.00 0.00 0.00 3.27
550 3022 7.032377 ACTGGATTTGTCTCTTTTGTTTCTC 57.968 36.000 0.00 0.00 0.00 2.87
551 3023 8.571336 CATACTGGATTTGTCTCTTTTGTTTCT 58.429 33.333 0.00 0.00 0.00 2.52
552 3024 8.567948 TCATACTGGATTTGTCTCTTTTGTTTC 58.432 33.333 0.00 0.00 0.00 2.78
553 3025 8.463930 TCATACTGGATTTGTCTCTTTTGTTT 57.536 30.769 0.00 0.00 0.00 2.83
554 3026 8.463930 TTCATACTGGATTTGTCTCTTTTGTT 57.536 30.769 0.00 0.00 0.00 2.83
555 3027 8.517878 CATTCATACTGGATTTGTCTCTTTTGT 58.482 33.333 0.00 0.00 0.00 2.83
556 3028 8.517878 ACATTCATACTGGATTTGTCTCTTTTG 58.482 33.333 0.00 0.00 0.00 2.44
557 3029 8.641498 ACATTCATACTGGATTTGTCTCTTTT 57.359 30.769 0.00 0.00 0.00 2.27
558 3030 8.641498 AACATTCATACTGGATTTGTCTCTTT 57.359 30.769 0.00 0.00 0.00 2.52
559 3031 8.641498 AAACATTCATACTGGATTTGTCTCTT 57.359 30.769 0.00 0.00 0.00 2.85
560 3032 8.517878 CAAAACATTCATACTGGATTTGTCTCT 58.482 33.333 0.00 0.00 0.00 3.10
561 3033 7.274250 GCAAAACATTCATACTGGATTTGTCTC 59.726 37.037 0.00 0.00 32.09 3.36
562 3034 7.092716 GCAAAACATTCATACTGGATTTGTCT 58.907 34.615 0.00 0.00 32.09 3.41
563 3035 6.867816 TGCAAAACATTCATACTGGATTTGTC 59.132 34.615 0.00 0.00 32.09 3.18
564 3036 6.757237 TGCAAAACATTCATACTGGATTTGT 58.243 32.000 0.00 0.00 32.09 2.83
565 3037 7.092079 TCTGCAAAACATTCATACTGGATTTG 58.908 34.615 0.00 0.00 32.37 2.32
566 3038 7.230849 TCTGCAAAACATTCATACTGGATTT 57.769 32.000 0.00 0.00 0.00 2.17
567 3039 6.839124 TCTGCAAAACATTCATACTGGATT 57.161 33.333 0.00 0.00 0.00 3.01
568 3040 6.839124 TTCTGCAAAACATTCATACTGGAT 57.161 33.333 0.00 0.00 0.00 3.41
569 3041 6.647334 TTTCTGCAAAACATTCATACTGGA 57.353 33.333 0.00 0.00 0.00 3.86
581 3053 2.869897 TGGTGACGTTTTCTGCAAAAC 58.130 42.857 4.25 4.25 45.53 2.43
582 3054 3.246619 GTTGGTGACGTTTTCTGCAAAA 58.753 40.909 0.00 0.00 0.00 2.44
583 3055 2.229062 TGTTGGTGACGTTTTCTGCAAA 59.771 40.909 0.00 0.00 0.00 3.68
584 3056 1.813178 TGTTGGTGACGTTTTCTGCAA 59.187 42.857 0.00 0.00 0.00 4.08
585 3057 1.454201 TGTTGGTGACGTTTTCTGCA 58.546 45.000 0.00 0.00 0.00 4.41
586 3058 2.774439 ATGTTGGTGACGTTTTCTGC 57.226 45.000 0.00 0.00 0.00 4.26
587 3059 4.208355 CGTAATGTTGGTGACGTTTTCTG 58.792 43.478 0.00 0.00 38.42 3.02
588 3060 3.249080 CCGTAATGTTGGTGACGTTTTCT 59.751 43.478 0.00 0.00 38.42 2.52
589 3061 3.248125 TCCGTAATGTTGGTGACGTTTTC 59.752 43.478 0.00 0.00 38.42 2.29
590 3062 3.204526 TCCGTAATGTTGGTGACGTTTT 58.795 40.909 0.00 0.00 38.42 2.43
591 3063 2.836262 TCCGTAATGTTGGTGACGTTT 58.164 42.857 0.00 0.00 38.42 3.60
592 3064 2.529780 TCCGTAATGTTGGTGACGTT 57.470 45.000 0.00 0.00 40.51 3.99
593 3065 2.529780 TTCCGTAATGTTGGTGACGT 57.470 45.000 0.00 0.00 33.51 4.34
594 3066 3.433957 TCATTTCCGTAATGTTGGTGACG 59.566 43.478 7.20 0.00 43.41 4.35
595 3067 4.668177 CGTCATTTCCGTAATGTTGGTGAC 60.668 45.833 7.20 0.00 43.41 3.67
596 3068 3.433957 CGTCATTTCCGTAATGTTGGTGA 59.566 43.478 7.20 0.00 43.41 4.02
597 3069 3.742786 CGTCATTTCCGTAATGTTGGTG 58.257 45.455 7.20 0.00 43.41 4.17
598 3070 2.160813 GCGTCATTTCCGTAATGTTGGT 59.839 45.455 7.20 0.00 43.41 3.67
599 3071 2.418628 AGCGTCATTTCCGTAATGTTGG 59.581 45.455 7.20 0.00 43.41 3.77
600 3072 3.740044 AGCGTCATTTCCGTAATGTTG 57.260 42.857 7.20 3.69 43.41 3.33
601 3073 4.472286 CAAAGCGTCATTTCCGTAATGTT 58.528 39.130 7.20 0.00 43.41 2.71
602 3074 3.119990 CCAAAGCGTCATTTCCGTAATGT 60.120 43.478 7.20 0.00 43.41 2.71
603 3075 3.119990 ACCAAAGCGTCATTTCCGTAATG 60.120 43.478 2.07 2.07 44.14 1.90
604 3076 3.078837 ACCAAAGCGTCATTTCCGTAAT 58.921 40.909 0.00 0.00 0.00 1.89
605 3077 2.481185 GACCAAAGCGTCATTTCCGTAA 59.519 45.455 0.00 0.00 32.74 3.18
606 3078 2.070783 GACCAAAGCGTCATTTCCGTA 58.929 47.619 0.00 0.00 32.74 4.02
607 3079 0.872388 GACCAAAGCGTCATTTCCGT 59.128 50.000 0.00 0.00 32.74 4.69
608 3080 0.168128 GGACCAAAGCGTCATTTCCG 59.832 55.000 0.00 0.00 34.24 4.30
609 3081 1.068541 GTGGACCAAAGCGTCATTTCC 60.069 52.381 0.00 0.00 34.24 3.13
610 3082 1.606668 TGTGGACCAAAGCGTCATTTC 59.393 47.619 0.00 0.00 34.24 2.17
611 3083 1.686355 TGTGGACCAAAGCGTCATTT 58.314 45.000 0.00 0.00 34.24 2.32
612 3084 1.812571 GATGTGGACCAAAGCGTCATT 59.187 47.619 0.00 0.00 34.24 2.57
613 3085 1.453155 GATGTGGACCAAAGCGTCAT 58.547 50.000 0.00 0.00 34.24 3.06
614 3086 0.605319 GGATGTGGACCAAAGCGTCA 60.605 55.000 0.00 0.00 34.24 4.35
615 3087 0.321653 AGGATGTGGACCAAAGCGTC 60.322 55.000 0.00 0.00 0.00 5.19
616 3088 0.606401 CAGGATGTGGACCAAAGCGT 60.606 55.000 0.00 0.00 0.00 5.07
617 3089 1.926511 GCAGGATGTGGACCAAAGCG 61.927 60.000 0.00 0.00 39.31 4.68
618 3090 1.598701 GGCAGGATGTGGACCAAAGC 61.599 60.000 0.00 0.00 39.31 3.51
619 3091 0.967380 GGGCAGGATGTGGACCAAAG 60.967 60.000 0.00 0.00 39.31 2.77
620 3092 1.076549 GGGCAGGATGTGGACCAAA 59.923 57.895 0.00 0.00 39.31 3.28
621 3093 1.508667 ATGGGCAGGATGTGGACCAA 61.509 55.000 0.00 0.00 39.31 3.67
622 3094 1.508667 AATGGGCAGGATGTGGACCA 61.509 55.000 0.00 0.00 39.31 4.02
623 3095 1.039233 CAATGGGCAGGATGTGGACC 61.039 60.000 0.00 0.00 39.31 4.46
624 3096 1.039233 CCAATGGGCAGGATGTGGAC 61.039 60.000 0.00 0.00 39.31 4.02
625 3097 1.213619 TCCAATGGGCAGGATGTGGA 61.214 55.000 0.00 0.00 39.31 4.02
626 3098 0.105862 ATCCAATGGGCAGGATGTGG 60.106 55.000 0.00 0.00 42.86 4.17
627 3099 1.325355 GATCCAATGGGCAGGATGTG 58.675 55.000 0.00 0.00 44.44 3.21
628 3100 0.179009 CGATCCAATGGGCAGGATGT 60.179 55.000 0.00 0.00 44.44 3.06
629 3101 1.521450 GCGATCCAATGGGCAGGATG 61.521 60.000 0.00 0.00 44.44 3.51
630 3102 1.228367 GCGATCCAATGGGCAGGAT 60.228 57.895 0.00 0.00 46.98 3.24
631 3103 2.192979 GCGATCCAATGGGCAGGA 59.807 61.111 0.00 0.00 38.50 3.86
632 3104 3.282157 CGCGATCCAATGGGCAGG 61.282 66.667 0.00 0.00 0.00 4.85
633 3105 1.572085 GATCGCGATCCAATGGGCAG 61.572 60.000 33.80 0.00 31.76 4.85
634 3106 1.597854 GATCGCGATCCAATGGGCA 60.598 57.895 33.80 0.00 31.76 5.36
635 3107 3.257933 GATCGCGATCCAATGGGC 58.742 61.111 33.80 10.92 31.76 5.36
643 3115 3.338676 GGCCGTTGGATCGCGATC 61.339 66.667 35.42 35.42 37.11 3.69
647 3119 3.792053 ATCTCGGCCGTTGGATCGC 62.792 63.158 27.15 0.00 0.00 4.58
648 3120 1.661821 GATCTCGGCCGTTGGATCG 60.662 63.158 27.15 6.14 0.00 3.69
649 3121 1.661821 CGATCTCGGCCGTTGGATC 60.662 63.158 29.61 29.61 35.37 3.36
650 3122 2.417516 CGATCTCGGCCGTTGGAT 59.582 61.111 27.15 24.51 35.37 3.41
651 3123 4.508128 GCGATCTCGGCCGTTGGA 62.508 66.667 27.15 21.06 40.23 3.53
652 3124 4.812476 TGCGATCTCGGCCGTTGG 62.812 66.667 27.15 16.42 40.23 3.77
653 3125 2.586079 ATGCGATCTCGGCCGTTG 60.586 61.111 27.15 19.13 40.23 4.10
654 3126 2.279517 GATGCGATCTCGGCCGTT 60.280 61.111 27.15 11.62 40.23 4.44
655 3127 4.630785 CGATGCGATCTCGGCCGT 62.631 66.667 27.15 5.51 40.23 5.68
656 3128 3.249973 TACGATGCGATCTCGGCCG 62.250 63.158 22.12 22.12 40.37 6.13
657 3129 1.442857 CTACGATGCGATCTCGGCC 60.443 63.158 7.63 0.00 40.37 6.13
658 3130 2.083522 GCTACGATGCGATCTCGGC 61.084 63.158 7.63 0.00 40.37 5.54
659 3131 0.999228 GTGCTACGATGCGATCTCGG 60.999 60.000 7.63 0.00 40.37 4.63
660 3132 0.999228 GGTGCTACGATGCGATCTCG 60.999 60.000 1.64 1.64 41.77 4.04
661 3133 0.312416 AGGTGCTACGATGCGATCTC 59.688 55.000 0.00 0.00 35.36 2.75
662 3134 1.605753 TAGGTGCTACGATGCGATCT 58.394 50.000 0.00 0.00 35.36 2.75
663 3135 2.320367 CTTAGGTGCTACGATGCGATC 58.680 52.381 0.00 0.00 35.36 3.69
664 3136 1.603172 GCTTAGGTGCTACGATGCGAT 60.603 52.381 0.00 0.00 35.36 4.58
665 3137 0.248907 GCTTAGGTGCTACGATGCGA 60.249 55.000 0.00 0.00 35.36 5.10
666 3138 1.215655 GGCTTAGGTGCTACGATGCG 61.216 60.000 0.00 0.00 35.36 4.73
667 3139 0.105039 AGGCTTAGGTGCTACGATGC 59.895 55.000 0.00 0.00 0.00 3.91
668 3140 1.539065 CCAGGCTTAGGTGCTACGATG 60.539 57.143 0.00 0.00 0.00 3.84
669 3141 0.753262 CCAGGCTTAGGTGCTACGAT 59.247 55.000 0.00 0.00 0.00 3.73
670 3142 0.613853 ACCAGGCTTAGGTGCTACGA 60.614 55.000 0.00 0.00 38.13 3.43
671 3143 1.898154 ACCAGGCTTAGGTGCTACG 59.102 57.895 0.00 0.00 38.13 3.51
695 3167 2.050144 GGGAGAATATCTGGTGCTCCA 58.950 52.381 7.39 7.39 45.39 3.86
696 3168 2.334023 AGGGAGAATATCTGGTGCTCC 58.666 52.381 0.00 0.00 43.40 4.70
697 3169 3.057174 CGTAGGGAGAATATCTGGTGCTC 60.057 52.174 0.00 0.00 0.00 4.26
698 3170 2.894126 CGTAGGGAGAATATCTGGTGCT 59.106 50.000 0.00 0.00 0.00 4.40
699 3171 2.891580 TCGTAGGGAGAATATCTGGTGC 59.108 50.000 0.00 0.00 0.00 5.01
700 3172 5.290386 GTTTCGTAGGGAGAATATCTGGTG 58.710 45.833 0.00 0.00 0.00 4.17
701 3173 4.344390 GGTTTCGTAGGGAGAATATCTGGT 59.656 45.833 0.00 0.00 0.00 4.00
702 3174 4.262506 GGGTTTCGTAGGGAGAATATCTGG 60.263 50.000 0.00 0.00 0.00 3.86
703 3175 4.589374 AGGGTTTCGTAGGGAGAATATCTG 59.411 45.833 0.00 0.00 0.00 2.90
704 3176 4.817286 AGGGTTTCGTAGGGAGAATATCT 58.183 43.478 0.00 0.00 0.00 1.98
705 3177 5.047448 GGTAGGGTTTCGTAGGGAGAATATC 60.047 48.000 0.00 0.00 0.00 1.63
706 3178 4.837298 GGTAGGGTTTCGTAGGGAGAATAT 59.163 45.833 0.00 0.00 0.00 1.28
707 3179 4.218312 GGTAGGGTTTCGTAGGGAGAATA 58.782 47.826 0.00 0.00 0.00 1.75
708 3180 3.036819 GGTAGGGTTTCGTAGGGAGAAT 58.963 50.000 0.00 0.00 0.00 2.40
709 3181 2.460669 GGTAGGGTTTCGTAGGGAGAA 58.539 52.381 0.00 0.00 0.00 2.87
710 3182 1.683011 CGGTAGGGTTTCGTAGGGAGA 60.683 57.143 0.00 0.00 0.00 3.71
711 3183 0.743097 CGGTAGGGTTTCGTAGGGAG 59.257 60.000 0.00 0.00 0.00 4.30
712 3184 1.322538 GCGGTAGGGTTTCGTAGGGA 61.323 60.000 0.00 0.00 0.00 4.20
713 3185 1.142531 GCGGTAGGGTTTCGTAGGG 59.857 63.158 0.00 0.00 0.00 3.53
714 3186 1.226773 CGCGGTAGGGTTTCGTAGG 60.227 63.158 0.00 0.00 0.00 3.18
715 3187 0.799534 CACGCGGTAGGGTTTCGTAG 60.800 60.000 12.47 0.00 41.93 3.51
716 3188 1.212490 CACGCGGTAGGGTTTCGTA 59.788 57.895 12.47 0.00 41.93 3.43
717 3189 2.048877 CACGCGGTAGGGTTTCGT 60.049 61.111 12.47 0.00 41.93 3.85
718 3190 3.484547 GCACGCGGTAGGGTTTCG 61.485 66.667 12.47 0.00 41.93 3.46
719 3191 2.357760 TGCACGCGGTAGGGTTTC 60.358 61.111 12.47 0.00 41.93 2.78
720 3192 2.667199 GTGCACGCGGTAGGGTTT 60.667 61.111 12.47 0.00 41.93 3.27
721 3193 4.692475 GGTGCACGCGGTAGGGTT 62.692 66.667 12.47 0.00 41.93 4.11
724 3196 4.814294 GAGGGTGCACGCGGTAGG 62.814 72.222 25.95 0.00 0.00 3.18
725 3197 3.296709 AAGAGGGTGCACGCGGTAG 62.297 63.158 25.95 0.13 0.00 3.18
733 3205 1.251527 GGAGACGAGAAGAGGGTGCA 61.252 60.000 0.00 0.00 0.00 4.57
742 3214 0.323542 GGGAGACTGGGAGACGAGAA 60.324 60.000 0.00 0.00 38.67 2.87
748 3220 2.169590 GAGGGTGGGAGACTGGGAGA 62.170 65.000 0.00 0.00 0.00 3.71
811 3283 3.746949 GAGCCCCACCTGCAGATCG 62.747 68.421 17.39 0.15 0.00 3.69
984 3463 1.473965 GCCATTCTCCGATTGCTCTGA 60.474 52.381 0.00 0.00 0.00 3.27
1089 3568 2.596419 GCTCGACAGATGAGTTTCGAAG 59.404 50.000 0.00 0.00 39.83 3.79
1203 3682 1.810030 GATCGGGGCACACGTTCTC 60.810 63.158 0.00 0.00 0.00 2.87
1347 3827 4.717877 TCAGTGCATCCTCTGAAAGAAAA 58.282 39.130 2.45 0.00 46.34 2.29
1367 3847 5.548056 ACACCTCTTTTCCTTAGATCCTTCA 59.452 40.000 0.00 0.00 0.00 3.02
1389 3869 4.081406 ACTTTTTGGCAGCAGATATCACA 58.919 39.130 5.32 0.00 0.00 3.58
1811 4363 1.583556 TCTGCTCCCATACCATGTGT 58.416 50.000 0.00 0.00 0.00 3.72
1852 4519 2.852449 TGGGCCTGATTTTCTACCATCT 59.148 45.455 4.53 0.00 0.00 2.90
2048 4721 7.386025 TGACATGAACAGAGTACTTGAAGAATG 59.614 37.037 0.00 1.23 0.00 2.67
2116 4789 3.997021 CTCTGGTGTTGTGTCCAATACTC 59.003 47.826 3.03 0.00 41.09 2.59
2117 4790 3.391296 ACTCTGGTGTTGTGTCCAATACT 59.609 43.478 3.03 0.00 41.09 2.12
2118 4791 3.498397 CACTCTGGTGTTGTGTCCAATAC 59.502 47.826 0.00 0.00 40.73 1.89
2119 4792 3.738982 CACTCTGGTGTTGTGTCCAATA 58.261 45.455 0.00 0.00 38.54 1.90
2120 4793 2.575532 CACTCTGGTGTTGTGTCCAAT 58.424 47.619 0.00 0.00 38.54 3.16
2121 4794 2.036958 CACTCTGGTGTTGTGTCCAA 57.963 50.000 0.00 0.00 38.54 3.53
2122 4795 3.778619 CACTCTGGTGTTGTGTCCA 57.221 52.632 0.00 0.00 38.54 4.02
2544 5224 3.073946 GGCTTAGATTGTATTAGGCCCCA 59.926 47.826 0.00 0.00 36.38 4.96
2715 5395 7.502120 AGATGCCATGTCAAGTTTATCATAC 57.498 36.000 0.00 0.00 0.00 2.39
2806 5486 4.635765 GCTGCATCACCTTCATTACAGTAA 59.364 41.667 0.00 0.00 0.00 2.24
2808 5488 3.012518 GCTGCATCACCTTCATTACAGT 58.987 45.455 0.00 0.00 0.00 3.55
2902 5583 8.685427 CCTCACCAATCACAAATCAAATATACA 58.315 33.333 0.00 0.00 0.00 2.29
3036 6566 3.135712 GGAAATCCAACCAAAACCACCTT 59.864 43.478 0.00 0.00 35.64 3.50
3102 6632 3.594134 CCAGGCACTAGAACTGAGAAAG 58.406 50.000 12.42 0.00 36.02 2.62
3663 7212 7.979115 TTTTGAACAAAATACACAGTACTGC 57.021 32.000 22.90 2.45 35.57 4.40
3705 7254 8.079203 CCTGCTACAAACACAATAAATACACAA 58.921 33.333 0.00 0.00 0.00 3.33
3720 7269 1.807142 GGCTTGTCTCCTGCTACAAAC 59.193 52.381 0.00 0.00 35.32 2.93
3744 7293 5.418524 TGCCAACATATCTGCAACAGTAAAT 59.581 36.000 0.00 0.00 32.61 1.40
3759 7308 2.942376 CGGCTATGTTTCTGCCAACATA 59.058 45.455 10.95 10.95 44.08 2.29
3760 7309 1.745087 CGGCTATGTTTCTGCCAACAT 59.255 47.619 10.02 10.02 46.82 2.71
3819 7371 6.071840 ACTCTGCTAGTACAAAATTCGAGAGT 60.072 38.462 0.00 0.00 36.36 3.24
3820 7372 6.326375 ACTCTGCTAGTACAAAATTCGAGAG 58.674 40.000 0.00 0.00 36.36 3.20
3821 7373 6.268825 ACTCTGCTAGTACAAAATTCGAGA 57.731 37.500 0.00 0.00 36.36 4.04
3840 7392 9.561069 AGTGTCATTTTCTTAATGTTGTACTCT 57.439 29.630 0.00 0.00 0.00 3.24
3942 7494 3.696548 GAGTTTGGCCATCTTAGGAAAGG 59.303 47.826 6.09 0.00 33.22 3.11
4042 7596 2.777094 TGCATCAATCAAGTGACCGAA 58.223 42.857 0.00 0.00 0.00 4.30
4046 7600 6.400727 GCAAGAAAATGCATCAATCAAGTGAC 60.401 38.462 0.00 0.00 45.70 3.67
4198 7759 7.171337 GCAGCAGAAACCAATTCTTTTGATAAA 59.829 33.333 0.00 0.00 46.39 1.40
4413 10536 8.713271 GTTTTGTTTGTTCTGTCAAAATGGTAA 58.287 29.630 0.00 0.00 40.28 2.85
4442 10565 8.319146 TCCTTAGTCATTCCCTACTTTGTAAAG 58.681 37.037 2.94 2.94 41.73 1.85
4490 10622 7.414222 ACAGTGATGCAATCCAAAATCTTAT 57.586 32.000 0.00 0.00 44.73 1.73
4491 10623 6.839124 ACAGTGATGCAATCCAAAATCTTA 57.161 33.333 0.00 0.00 44.73 2.10
4492 10624 5.733620 ACAGTGATGCAATCCAAAATCTT 57.266 34.783 0.00 0.00 44.73 2.40
4493 10625 6.660521 TCTTACAGTGATGCAATCCAAAATCT 59.339 34.615 0.00 0.00 44.73 2.40
4494 10626 6.855836 TCTTACAGTGATGCAATCCAAAATC 58.144 36.000 0.00 0.00 44.73 2.17
4495 10627 6.839124 TCTTACAGTGATGCAATCCAAAAT 57.161 33.333 0.00 0.00 44.73 1.82
4496 10628 6.839124 ATCTTACAGTGATGCAATCCAAAA 57.161 33.333 0.00 0.00 44.73 2.44
4497 10629 6.839124 AATCTTACAGTGATGCAATCCAAA 57.161 33.333 0.00 0.00 44.73 3.28
4498 10630 6.839124 AAATCTTACAGTGATGCAATCCAA 57.161 33.333 0.00 0.00 44.73 3.53
4499 10631 6.350361 CCAAAATCTTACAGTGATGCAATCCA 60.350 38.462 0.00 0.00 44.73 3.41
4500 10632 6.038356 CCAAAATCTTACAGTGATGCAATCC 58.962 40.000 0.00 0.00 44.73 3.01
4501 10633 6.855836 TCCAAAATCTTACAGTGATGCAATC 58.144 36.000 0.00 0.00 45.83 2.67
4502 10634 6.839124 TCCAAAATCTTACAGTGATGCAAT 57.161 33.333 0.00 0.00 0.00 3.56
4503 10635 6.839124 ATCCAAAATCTTACAGTGATGCAA 57.161 33.333 0.00 0.00 0.00 4.08
4504 10636 6.839124 AATCCAAAATCTTACAGTGATGCA 57.161 33.333 0.00 0.00 0.00 3.96
4505 10637 9.638239 TTTTAATCCAAAATCTTACAGTGATGC 57.362 29.630 0.00 0.00 31.05 3.91
4553 10690 2.755655 ACGTCATCTTTCTCATCTCCGT 59.244 45.455 0.00 0.00 0.00 4.69
4690 10839 9.071276 AGGATCCATGTCATCAAACATATTAAC 57.929 33.333 15.82 0.00 37.78 2.01
4702 10851 7.052873 CCCTCATATTAAGGATCCATGTCATC 58.947 42.308 15.82 0.00 35.83 2.92
4833 11023 1.826385 ACTTCCTCAATTGGCCTTCG 58.174 50.000 3.32 0.00 0.00 3.79
4841 11031 8.454106 CGACATCTTCAAAATACTTCCTCAATT 58.546 33.333 0.00 0.00 0.00 2.32
4924 11114 6.072175 CGTAAATCATCAAGGGAAAAGGTTGA 60.072 38.462 0.00 0.00 34.79 3.18
5024 11226 4.411256 TGTTACTTTCGAACCAACCTCT 57.589 40.909 0.00 0.00 0.00 3.69
5086 11288 4.556699 GCAGTTGACACAAATTGTACCTCC 60.557 45.833 0.00 0.00 39.17 4.30
5129 11331 8.716646 TGCATAACAAAAGAGATTAATCGAGA 57.283 30.769 9.78 0.00 0.00 4.04
5178 11380 9.185192 GACCACCAGTTAACGTATTATGTATAC 57.815 37.037 0.00 0.00 36.54 1.47
5199 11404 5.192927 TGTTTTGGATGGATGATAGACCAC 58.807 41.667 0.00 0.00 39.06 4.16
5233 11438 2.489971 ACGACGCCTGAAGAAAATTGA 58.510 42.857 0.00 0.00 0.00 2.57
5259 11465 7.169158 TGAGATTTGTATTTCCCATTTCCAC 57.831 36.000 0.00 0.00 0.00 4.02
5309 11536 3.550820 TGAGCACAAAAGCTGAGGTTAA 58.449 40.909 0.00 0.00 46.75 2.01
5416 11643 6.064717 AGCCCATGTTAATTATCAGGAGAAC 58.935 40.000 9.24 0.00 0.00 3.01
5527 11754 7.655236 TTGATTCAATTTGCCACTATGTTTG 57.345 32.000 0.00 0.00 0.00 2.93
5534 11761 5.534207 TCAGTTTGATTCAATTTGCCACT 57.466 34.783 0.00 0.00 0.00 4.00
5728 11957 5.947228 ATACGCATATCCAATCCAACAAG 57.053 39.130 0.00 0.00 0.00 3.16
5804 12033 1.269958 CCAGAGGAGACCATGACACA 58.730 55.000 0.00 0.00 0.00 3.72
5813 12042 2.635427 AGACAAGGAAACCAGAGGAGAC 59.365 50.000 0.00 0.00 0.00 3.36
5816 12045 2.408565 ACAGACAAGGAAACCAGAGGA 58.591 47.619 0.00 0.00 0.00 3.71
5817 12046 2.938956 ACAGACAAGGAAACCAGAGG 57.061 50.000 0.00 0.00 0.00 3.69
5870 12099 1.340889 GCCAGCATTCACAAACCAAGA 59.659 47.619 0.00 0.00 0.00 3.02
5871 12100 1.068895 TGCCAGCATTCACAAACCAAG 59.931 47.619 0.00 0.00 0.00 3.61
5924 12155 2.531522 AAAACTCACCAATGCAAGGC 57.468 45.000 8.36 0.00 0.00 4.35
6052 12283 5.313712 TCATCATCATGAGCTATGCATGTT 58.686 37.500 10.16 3.43 42.77 2.71
6053 12284 4.906618 TCATCATCATGAGCTATGCATGT 58.093 39.130 10.16 0.00 42.77 3.21
6062 12293 4.337274 TGTTGTCCATTCATCATCATGAGC 59.663 41.667 0.09 0.00 40.28 4.26
6093 12324 4.773674 TCCTCTACATGTTTTCGGAGGTAA 59.226 41.667 20.32 8.67 40.60 2.85
6115 12346 5.221126 GGAATCTATCCAACATGGCTTGTTC 60.221 44.000 15.07 2.32 46.90 3.18
6164 12395 2.752903 CCCTAACGTTTTGATCCAAGGG 59.247 50.000 5.91 10.26 36.73 3.95
6169 12400 6.374613 AGAGAATTTCCCTAACGTTTTGATCC 59.625 38.462 5.91 0.00 0.00 3.36
6178 12409 8.175716 GTGTTTATCAAGAGAATTTCCCTAACG 58.824 37.037 0.00 0.00 0.00 3.18
6234 12465 6.256912 TGTTTTGTACCTCGACTTTTGTTT 57.743 33.333 0.00 0.00 0.00 2.83
6237 12468 7.041644 TCCTATTGTTTTGTACCTCGACTTTTG 60.042 37.037 0.00 0.00 0.00 2.44
6238 12469 6.993902 TCCTATTGTTTTGTACCTCGACTTTT 59.006 34.615 0.00 0.00 0.00 2.27
6244 12475 7.061789 GCAATTTTCCTATTGTTTTGTACCTCG 59.938 37.037 0.00 0.00 37.72 4.63
6262 12493 3.233578 TGATTCGTCGCTTGCAATTTTC 58.766 40.909 0.00 0.00 0.00 2.29
6316 12571 9.553064 AATATAAAACTCAACTAGCATCTCAGG 57.447 33.333 0.00 0.00 0.00 3.86
6321 12576 9.956720 ATTGCAATATAAAACTCAACTAGCATC 57.043 29.630 11.02 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.