Multiple sequence alignment - TraesCS7B01G239500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G239500 chr7B 100.000 3842 0 0 1 3842 445659627 445655786 0.000000e+00 7095.0
1 TraesCS7B01G239500 chr7D 92.547 2254 75 27 65 2274 427907856 427905652 0.000000e+00 3145.0
2 TraesCS7B01G239500 chr7D 91.781 876 53 10 2722 3590 427905373 427904510 0.000000e+00 1201.0
3 TraesCS7B01G239500 chr7D 89.655 348 26 6 3471 3809 427904510 427904164 5.890000e-118 435.0
4 TraesCS7B01G239500 chr7D 100.000 31 0 0 3812 3842 427901963 427901933 1.490000e-04 58.4
5 TraesCS7B01G239500 chr7A 89.378 772 42 14 2548 3303 504734185 504734932 0.000000e+00 935.0
6 TraesCS7B01G239500 chr7A 81.061 1056 86 53 206 1186 504732184 504733200 0.000000e+00 737.0
7 TraesCS7B01G239500 chr7A 84.668 587 41 22 1705 2266 504733587 504734149 1.210000e-149 540.0
8 TraesCS7B01G239500 chr7A 86.195 297 29 5 3302 3590 504735094 504735386 1.040000e-80 311.0
9 TraesCS7B01G239500 chr7A 86.594 276 36 1 3468 3743 504735383 504735657 1.730000e-78 303.0
10 TraesCS7B01G239500 chr7A 89.655 116 11 1 3727 3842 504735727 504735841 3.090000e-31 147.0
11 TraesCS7B01G239500 chr7A 83.117 77 13 0 1241 1317 504733280 504733356 1.910000e-08 71.3
12 TraesCS7B01G239500 chr3D 80.909 110 19 2 2732 2840 330053440 330053548 6.840000e-13 86.1
13 TraesCS7B01G239500 chr3B 80.909 110 19 2 2732 2840 427585057 427585165 6.840000e-13 86.1
14 TraesCS7B01G239500 chr3A 80.909 110 19 2 2732 2840 445268559 445268667 6.840000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G239500 chr7B 445655786 445659627 3841 True 7095.00 7095 100.000000 1 3842 1 chr7B.!!$R1 3841
1 TraesCS7B01G239500 chr7D 427901933 427907856 5923 True 1209.85 3145 93.495750 65 3842 4 chr7D.!!$R1 3777
2 TraesCS7B01G239500 chr7A 504732184 504735841 3657 False 434.90 935 85.809714 206 3842 7 chr7A.!!$F1 3636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.243907 CTGTTCACCGACCTCGTGAT 59.756 55.0 0.0 0.0 37.74 3.06 F
1703 1840 0.170561 AGTAGCCGTGTTAGTCTGCG 59.829 55.0 0.0 0.0 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1889 2030 0.039618 TGGCTTCCACATTCCTTCCC 59.960 55.0 0.0 0.0 0.0 3.97 R
3683 4167 0.036010 CTGGAGCAGTGGTTAGGGTG 60.036 60.0 0.0 0.0 0.0 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.571080 TTTTTATTTTACTGTTCACCGACCT 57.429 32.000 0.00 0.00 0.00 3.85
33 34 6.790285 TTTATTTTACTGTTCACCGACCTC 57.210 37.500 0.00 0.00 0.00 3.85
34 35 2.427232 TTTACTGTTCACCGACCTCG 57.573 50.000 0.00 0.00 39.44 4.63
35 36 1.321474 TTACTGTTCACCGACCTCGT 58.679 50.000 0.00 0.00 37.74 4.18
36 37 0.594602 TACTGTTCACCGACCTCGTG 59.405 55.000 0.00 0.00 37.74 4.35
37 38 1.105167 ACTGTTCACCGACCTCGTGA 61.105 55.000 0.00 0.00 37.74 4.35
38 39 0.243907 CTGTTCACCGACCTCGTGAT 59.756 55.000 0.00 0.00 37.74 3.06
39 40 1.471287 CTGTTCACCGACCTCGTGATA 59.529 52.381 0.00 0.00 37.74 2.15
40 41 1.887854 TGTTCACCGACCTCGTGATAA 59.112 47.619 0.00 0.00 37.74 1.75
41 42 2.094906 TGTTCACCGACCTCGTGATAAG 60.095 50.000 0.00 0.00 37.74 1.73
42 43 2.118313 TCACCGACCTCGTGATAAGA 57.882 50.000 0.00 0.00 37.74 2.10
43 44 2.439409 TCACCGACCTCGTGATAAGAA 58.561 47.619 0.00 0.00 37.74 2.52
44 45 3.021695 TCACCGACCTCGTGATAAGAAT 58.978 45.455 0.00 0.00 37.74 2.40
45 46 4.201657 TCACCGACCTCGTGATAAGAATA 58.798 43.478 0.00 0.00 37.74 1.75
46 47 4.036027 TCACCGACCTCGTGATAAGAATAC 59.964 45.833 0.00 0.00 37.74 1.89
47 48 3.003068 ACCGACCTCGTGATAAGAATACG 59.997 47.826 0.00 0.00 39.04 3.06
48 49 3.003068 CCGACCTCGTGATAAGAATACGT 59.997 47.826 0.00 0.00 38.80 3.57
49 50 3.966844 CGACCTCGTGATAAGAATACGTG 59.033 47.826 0.00 0.00 38.80 4.49
50 51 4.495349 CGACCTCGTGATAAGAATACGTGT 60.495 45.833 0.00 0.00 38.80 4.49
51 52 4.669318 ACCTCGTGATAAGAATACGTGTG 58.331 43.478 0.00 0.00 38.80 3.82
52 53 4.157289 ACCTCGTGATAAGAATACGTGTGT 59.843 41.667 0.00 0.00 38.80 3.72
53 54 4.733887 CCTCGTGATAAGAATACGTGTGTC 59.266 45.833 0.00 0.00 38.80 3.67
54 55 4.665212 TCGTGATAAGAATACGTGTGTCC 58.335 43.478 0.00 0.00 38.80 4.02
55 56 4.397103 TCGTGATAAGAATACGTGTGTCCT 59.603 41.667 0.00 0.00 38.80 3.85
56 57 4.733887 CGTGATAAGAATACGTGTGTCCTC 59.266 45.833 0.00 0.00 33.48 3.71
57 58 5.448768 CGTGATAAGAATACGTGTGTCCTCT 60.449 44.000 0.00 0.00 33.48 3.69
58 59 6.331061 GTGATAAGAATACGTGTGTCCTCTT 58.669 40.000 0.00 0.00 34.93 2.85
59 60 6.472808 GTGATAAGAATACGTGTGTCCTCTTC 59.527 42.308 0.00 0.00 33.53 2.87
60 61 3.489180 AGAATACGTGTGTCCTCTTCG 57.511 47.619 0.00 0.00 0.00 3.79
61 62 2.818432 AGAATACGTGTGTCCTCTTCGT 59.182 45.455 0.00 0.00 38.30 3.85
62 63 4.005650 AGAATACGTGTGTCCTCTTCGTA 58.994 43.478 0.00 0.00 40.32 3.43
63 64 4.639310 AGAATACGTGTGTCCTCTTCGTAT 59.361 41.667 0.00 0.00 45.29 3.06
74 75 5.482878 TGTCCTCTTCGTATCCCTTTAAACT 59.517 40.000 0.00 0.00 0.00 2.66
101 102 6.041523 TGTTTCAAAGTTTGGGATCCCTAAAG 59.958 38.462 31.05 18.59 33.07 1.85
135 136 4.094887 GCATAACATACTGGCATATTCGGG 59.905 45.833 0.00 0.00 0.00 5.14
136 137 2.185004 ACATACTGGCATATTCGGGC 57.815 50.000 0.00 0.00 0.00 6.13
146 147 2.872245 GCATATTCGGGCGCACATATAT 59.128 45.455 11.77 9.11 0.00 0.86
253 254 4.849329 CCGCCTCGTAGCCGTGTC 62.849 72.222 0.00 0.00 35.01 3.67
356 358 4.767255 CCACCCCACTCGCTGCTC 62.767 72.222 0.00 0.00 0.00 4.26
357 359 4.007644 CACCCCACTCGCTGCTCA 62.008 66.667 0.00 0.00 0.00 4.26
358 360 3.699894 ACCCCACTCGCTGCTCAG 61.700 66.667 0.00 0.00 0.00 3.35
398 402 2.497138 ACCTAGTAACAAACGGCCAAC 58.503 47.619 2.24 0.00 0.00 3.77
470 474 1.339929 GGCAAAAAGAAAGCCCGAAGA 59.660 47.619 0.00 0.00 42.58 2.87
504 521 0.698238 TACCCCAGCAGCAGTTTCAT 59.302 50.000 0.00 0.00 0.00 2.57
537 554 3.542602 ACCTCCTCCCCACCACCT 61.543 66.667 0.00 0.00 0.00 4.00
618 644 3.801997 AAGCAGCCAGATCGGGGG 61.802 66.667 14.13 5.43 34.06 5.40
746 773 3.878667 GCTGCTCGGGGGCCTATT 61.879 66.667 0.84 0.00 0.00 1.73
747 774 2.427753 CTGCTCGGGGGCCTATTC 59.572 66.667 0.84 0.00 0.00 1.75
748 775 3.521529 CTGCTCGGGGGCCTATTCG 62.522 68.421 0.84 3.06 0.00 3.34
876 907 0.466124 GGGAGAGGAGGGATTTGTCG 59.534 60.000 0.00 0.00 0.00 4.35
877 908 1.486211 GGAGAGGAGGGATTTGTCGA 58.514 55.000 0.00 0.00 0.00 4.20
994 1047 3.132139 CGAGAGGCGAACCGAGGA 61.132 66.667 0.00 0.00 44.57 3.71
1071 1143 4.488136 ATCGCAATGCCGGCCTCA 62.488 61.111 26.77 5.45 0.00 3.86
1145 1221 1.287730 CGCGCACTCTGCTTTCTCTT 61.288 55.000 8.75 0.00 42.25 2.85
1236 1355 3.194861 CGTCCTCATTCCATTTCGCTTA 58.805 45.455 0.00 0.00 0.00 3.09
1237 1356 3.809832 CGTCCTCATTCCATTTCGCTTAT 59.190 43.478 0.00 0.00 0.00 1.73
1382 1501 2.717580 TCACTGCGAAACGACATACT 57.282 45.000 0.00 0.00 0.00 2.12
1383 1502 2.592194 TCACTGCGAAACGACATACTC 58.408 47.619 0.00 0.00 0.00 2.59
1384 1503 1.654105 CACTGCGAAACGACATACTCC 59.346 52.381 0.00 0.00 0.00 3.85
1385 1504 1.544691 ACTGCGAAACGACATACTCCT 59.455 47.619 0.00 0.00 0.00 3.69
1387 1506 3.106672 CTGCGAAACGACATACTCCTAC 58.893 50.000 0.00 0.00 0.00 3.18
1388 1507 2.488937 TGCGAAACGACATACTCCTACA 59.511 45.455 0.00 0.00 0.00 2.74
1483 1610 9.546428 CTTTATTTTGTTCCCATTTCTCACTTT 57.454 29.630 0.00 0.00 0.00 2.66
1579 1708 6.183360 GCAGCTTTGGAACTTTGATGATCTAT 60.183 38.462 0.00 0.00 0.00 1.98
1584 1713 6.908870 TGGAACTTTGATGATCTATTGACG 57.091 37.500 0.00 0.00 0.00 4.35
1601 1730 4.521130 TGACGCTTGACATCTCTTACTT 57.479 40.909 0.00 0.00 0.00 2.24
1623 1760 7.450074 ACTTGTACATGTCAATTTGGTAGAGA 58.550 34.615 0.00 0.00 0.00 3.10
1625 1762 6.764379 TGTACATGTCAATTTGGTAGAGACA 58.236 36.000 0.00 0.00 42.62 3.41
1629 1766 5.152623 TGTCAATTTGGTAGAGACAGAGG 57.847 43.478 0.00 0.00 34.59 3.69
1661 1798 1.210478 AGATTGCCGTCCTGCTTATGT 59.790 47.619 0.00 0.00 0.00 2.29
1664 1801 0.541392 TGCCGTCCTGCTTATGTGAT 59.459 50.000 0.00 0.00 0.00 3.06
1682 1819 6.245115 TGTGATTGTGCTGAATAAGTCAAG 57.755 37.500 0.00 0.00 35.22 3.02
1683 1820 5.997129 TGTGATTGTGCTGAATAAGTCAAGA 59.003 36.000 0.00 0.00 35.22 3.02
1684 1821 6.486320 TGTGATTGTGCTGAATAAGTCAAGAA 59.514 34.615 0.00 0.00 35.22 2.52
1699 1836 3.919197 GTCAAGAAGTAGCCGTGTTAGTC 59.081 47.826 0.00 0.00 0.00 2.59
1703 1840 0.170561 AGTAGCCGTGTTAGTCTGCG 59.829 55.000 0.00 0.00 0.00 5.18
1711 1848 3.499048 CGTGTTAGTCTGCGTATCTTGT 58.501 45.455 0.00 0.00 0.00 3.16
1819 1956 6.234177 AGGAACTGTCTCTATCAGGTTTTTG 58.766 40.000 0.00 0.00 37.18 2.44
1821 1958 4.911390 ACTGTCTCTATCAGGTTTTTGGG 58.089 43.478 0.00 0.00 37.25 4.12
1825 1962 4.079730 GTCTCTATCAGGTTTTTGGGGGAT 60.080 45.833 0.00 0.00 0.00 3.85
1889 2030 7.275560 TGCAATATATTCCGAGTAACATCGATG 59.724 37.037 23.68 23.68 45.56 3.84
1890 2031 7.254117 GCAATATATTCCGAGTAACATCGATGG 60.254 40.741 28.09 9.71 45.56 3.51
2019 2169 4.824479 TGCTGTCCATCTGTCAAGAATA 57.176 40.909 0.00 0.00 35.59 1.75
2084 2237 4.412528 ACTTCCCTTTCACCTGTAGAACTT 59.587 41.667 0.00 0.00 0.00 2.66
2107 2260 0.610232 CCCTTGGTCTGCTTCCTTGG 60.610 60.000 0.00 0.00 0.00 3.61
2266 2425 2.233676 CCTTCCTGTTTTAATGCCCACC 59.766 50.000 0.00 0.00 0.00 4.61
2269 2428 3.515562 TCCTGTTTTAATGCCCACCAAT 58.484 40.909 0.00 0.00 0.00 3.16
2270 2429 4.678256 TCCTGTTTTAATGCCCACCAATA 58.322 39.130 0.00 0.00 0.00 1.90
2271 2430 5.276440 TCCTGTTTTAATGCCCACCAATAT 58.724 37.500 0.00 0.00 0.00 1.28
2273 2432 6.897966 TCCTGTTTTAATGCCCACCAATATTA 59.102 34.615 0.00 0.00 0.00 0.98
2274 2433 6.983890 CCTGTTTTAATGCCCACCAATATTAC 59.016 38.462 0.00 0.00 0.00 1.89
2278 2437 6.969993 TTAATGCCCACCAATATTACTTCC 57.030 37.500 0.00 0.00 0.00 3.46
2280 2439 4.164843 TGCCCACCAATATTACTTCCTC 57.835 45.455 0.00 0.00 0.00 3.71
2281 2440 3.139077 GCCCACCAATATTACTTCCTCG 58.861 50.000 0.00 0.00 0.00 4.63
2284 2443 4.814771 CCCACCAATATTACTTCCTCGTTC 59.185 45.833 0.00 0.00 0.00 3.95
2285 2444 4.814771 CCACCAATATTACTTCCTCGTTCC 59.185 45.833 0.00 0.00 0.00 3.62
2286 2445 5.424757 CACCAATATTACTTCCTCGTTCCA 58.575 41.667 0.00 0.00 0.00 3.53
2288 2447 6.373216 CACCAATATTACTTCCTCGTTCCAAA 59.627 38.462 0.00 0.00 0.00 3.28
2289 2448 6.943718 ACCAATATTACTTCCTCGTTCCAAAA 59.056 34.615 0.00 0.00 0.00 2.44
2294 2453 9.901172 ATATTACTTCCTCGTTCCAAAATAAGT 57.099 29.630 0.00 0.00 0.00 2.24
2295 2454 5.941948 ACTTCCTCGTTCCAAAATAAGTG 57.058 39.130 0.00 0.00 0.00 3.16
2296 2455 5.374071 ACTTCCTCGTTCCAAAATAAGTGT 58.626 37.500 0.00 0.00 0.00 3.55
2298 2457 4.320870 TCCTCGTTCCAAAATAAGTGTCC 58.679 43.478 0.00 0.00 0.00 4.02
2299 2458 3.439129 CCTCGTTCCAAAATAAGTGTCCC 59.561 47.826 0.00 0.00 0.00 4.46
2300 2459 4.324267 CTCGTTCCAAAATAAGTGTCCCT 58.676 43.478 0.00 0.00 0.00 4.20
2301 2460 4.721132 TCGTTCCAAAATAAGTGTCCCTT 58.279 39.130 0.00 0.00 37.17 3.95
2302 2461 4.517453 TCGTTCCAAAATAAGTGTCCCTTG 59.483 41.667 0.00 0.00 34.46 3.61
2304 2463 4.463050 TCCAAAATAAGTGTCCCTTGGT 57.537 40.909 0.00 0.00 35.77 3.67
2306 2465 5.566469 TCCAAAATAAGTGTCCCTTGGTAG 58.434 41.667 0.00 0.00 35.77 3.18
2307 2466 5.073965 TCCAAAATAAGTGTCCCTTGGTAGT 59.926 40.000 0.00 0.00 35.77 2.73
2308 2467 6.272792 TCCAAAATAAGTGTCCCTTGGTAGTA 59.727 38.462 0.00 0.00 35.77 1.82
2309 2468 6.373495 CCAAAATAAGTGTCCCTTGGTAGTAC 59.627 42.308 0.00 0.00 34.46 2.73
2310 2469 6.691255 AAATAAGTGTCCCTTGGTAGTACA 57.309 37.500 2.06 0.00 34.46 2.90
2311 2470 6.691255 AATAAGTGTCCCTTGGTAGTACAA 57.309 37.500 2.06 0.00 34.46 2.41
2312 2471 4.347360 AAGTGTCCCTTGGTAGTACAAC 57.653 45.455 2.06 0.00 30.18 3.32
2313 2472 3.584294 AGTGTCCCTTGGTAGTACAACT 58.416 45.455 2.06 0.00 0.00 3.16
2314 2473 3.971971 AGTGTCCCTTGGTAGTACAACTT 59.028 43.478 2.06 0.00 0.00 2.66
2315 2474 5.149976 AGTGTCCCTTGGTAGTACAACTTA 58.850 41.667 2.06 0.00 0.00 2.24
2316 2475 5.011431 AGTGTCCCTTGGTAGTACAACTTAC 59.989 44.000 2.06 0.00 0.00 2.34
2317 2476 4.900652 TGTCCCTTGGTAGTACAACTTACA 59.099 41.667 2.06 0.00 0.00 2.41
2318 2477 5.221501 TGTCCCTTGGTAGTACAACTTACAC 60.222 44.000 2.06 0.00 0.00 2.90
2319 2478 5.011431 GTCCCTTGGTAGTACAACTTACACT 59.989 44.000 2.06 0.00 0.00 3.55
2320 2479 5.603813 TCCCTTGGTAGTACAACTTACACTT 59.396 40.000 2.06 0.00 0.00 3.16
2321 2480 6.100134 TCCCTTGGTAGTACAACTTACACTTT 59.900 38.462 2.06 0.00 0.00 2.66
2322 2481 6.769341 CCCTTGGTAGTACAACTTACACTTTT 59.231 38.462 2.06 0.00 0.00 2.27
2323 2482 7.283807 CCCTTGGTAGTACAACTTACACTTTTT 59.716 37.037 2.06 0.00 0.00 1.94
2342 2501 2.773993 TTTTGGGACGGATGGAGTAC 57.226 50.000 0.00 0.00 0.00 2.73
2343 2502 1.946984 TTTGGGACGGATGGAGTACT 58.053 50.000 0.00 0.00 0.00 2.73
2344 2503 1.946984 TTGGGACGGATGGAGTACTT 58.053 50.000 0.00 0.00 0.00 2.24
2345 2504 2.832643 TGGGACGGATGGAGTACTTA 57.167 50.000 0.00 0.00 0.00 2.24
2346 2505 2.662866 TGGGACGGATGGAGTACTTAG 58.337 52.381 0.00 0.00 0.00 2.18
2347 2506 2.024655 TGGGACGGATGGAGTACTTAGT 60.025 50.000 0.00 0.00 0.00 2.24
2348 2507 3.202818 TGGGACGGATGGAGTACTTAGTA 59.797 47.826 0.00 0.00 0.00 1.82
2349 2508 4.141088 TGGGACGGATGGAGTACTTAGTAT 60.141 45.833 0.00 0.00 0.00 2.12
2350 2509 4.831710 GGGACGGATGGAGTACTTAGTATT 59.168 45.833 0.00 0.00 0.00 1.89
2351 2510 5.303845 GGGACGGATGGAGTACTTAGTATTT 59.696 44.000 0.00 0.00 0.00 1.40
2352 2511 6.183360 GGGACGGATGGAGTACTTAGTATTTT 60.183 42.308 0.00 0.00 0.00 1.82
2353 2512 7.270779 GGACGGATGGAGTACTTAGTATTTTT 58.729 38.462 0.00 0.00 0.00 1.94
2354 2513 7.224167 GGACGGATGGAGTACTTAGTATTTTTG 59.776 40.741 0.00 0.00 0.00 2.44
2355 2514 7.618137 ACGGATGGAGTACTTAGTATTTTTGT 58.382 34.615 0.00 0.00 0.00 2.83
2356 2515 8.752187 ACGGATGGAGTACTTAGTATTTTTGTA 58.248 33.333 0.00 0.00 0.00 2.41
2357 2516 9.590451 CGGATGGAGTACTTAGTATTTTTGTAA 57.410 33.333 0.00 0.00 0.00 2.41
2383 2542 5.709631 TGACAAACAAATCAGCTATTAGCCA 59.290 36.000 12.05 0.00 43.77 4.75
2401 2563 1.107945 CATGCTGCCCATCATGACAA 58.892 50.000 0.00 0.00 41.82 3.18
2415 2577 9.177608 CCCATCATGACAACTAAGAATTTTAGA 57.822 33.333 0.00 0.00 0.00 2.10
2421 2583 9.739276 ATGACAACTAAGAATTTTAGACATCCA 57.261 29.630 11.79 0.00 0.00 3.41
2430 2592 6.540189 AGAATTTTAGACATCCATTGACTCGG 59.460 38.462 0.00 0.00 32.49 4.63
2437 2599 1.107114 TCCATTGACTCGGAGCTCTC 58.893 55.000 14.64 3.54 0.00 3.20
2440 2602 0.453793 ATTGACTCGGAGCTCTCGTG 59.546 55.000 14.64 17.20 0.00 4.35
2456 2618 1.875963 GTGGTCGGTCAATTGGCAG 59.124 57.895 12.93 8.26 0.00 4.85
2458 2620 0.327924 TGGTCGGTCAATTGGCAGAT 59.672 50.000 15.87 0.00 0.00 2.90
2459 2621 0.734889 GGTCGGTCAATTGGCAGATG 59.265 55.000 15.87 0.63 0.00 2.90
2460 2622 1.678728 GGTCGGTCAATTGGCAGATGA 60.679 52.381 15.87 3.05 0.00 2.92
2461 2623 1.398390 GTCGGTCAATTGGCAGATGAC 59.602 52.381 15.87 20.25 42.08 3.06
2463 2625 1.399440 CGGTCAATTGGCAGATGACAG 59.601 52.381 25.95 21.12 44.05 3.51
2464 2626 1.747355 GGTCAATTGGCAGATGACAGG 59.253 52.381 25.95 0.00 44.05 4.00
2465 2627 2.440409 GTCAATTGGCAGATGACAGGT 58.560 47.619 22.29 0.00 42.31 4.00
2466 2628 2.163010 GTCAATTGGCAGATGACAGGTG 59.837 50.000 22.29 0.00 42.31 4.00
2467 2629 2.040145 TCAATTGGCAGATGACAGGTGA 59.960 45.455 5.42 0.55 32.66 4.02
2468 2630 2.821378 CAATTGGCAGATGACAGGTGAA 59.179 45.455 0.00 0.00 32.66 3.18
2469 2631 2.885135 TTGGCAGATGACAGGTGAAT 57.115 45.000 0.00 0.00 32.66 2.57
2470 2632 2.885135 TGGCAGATGACAGGTGAATT 57.115 45.000 0.00 0.00 0.00 2.17
2471 2633 2.715046 TGGCAGATGACAGGTGAATTC 58.285 47.619 0.00 0.00 0.00 2.17
2472 2634 2.040145 TGGCAGATGACAGGTGAATTCA 59.960 45.455 3.38 3.38 0.00 2.57
2473 2635 2.681848 GGCAGATGACAGGTGAATTCAG 59.318 50.000 8.80 0.00 0.00 3.02
2474 2636 3.341823 GCAGATGACAGGTGAATTCAGT 58.658 45.455 8.80 3.20 0.00 3.41
2475 2637 3.755378 GCAGATGACAGGTGAATTCAGTT 59.245 43.478 8.80 0.00 0.00 3.16
2476 2638 4.937620 GCAGATGACAGGTGAATTCAGTTA 59.062 41.667 8.80 0.71 0.00 2.24
2477 2639 5.163814 GCAGATGACAGGTGAATTCAGTTAC 60.164 44.000 8.80 0.00 0.00 2.50
2478 2640 5.934043 CAGATGACAGGTGAATTCAGTTACA 59.066 40.000 8.80 6.56 0.00 2.41
2479 2641 5.934625 AGATGACAGGTGAATTCAGTTACAC 59.065 40.000 8.80 0.00 0.00 2.90
2488 2650 7.251704 GTGAATTCAGTTACACCATCCTATG 57.748 40.000 8.80 0.00 0.00 2.23
2489 2651 7.047891 GTGAATTCAGTTACACCATCCTATGA 58.952 38.462 8.80 0.00 0.00 2.15
2490 2652 7.552687 GTGAATTCAGTTACACCATCCTATGAA 59.447 37.037 8.80 0.00 0.00 2.57
2491 2653 8.106462 TGAATTCAGTTACACCATCCTATGAAA 58.894 33.333 3.38 0.00 0.00 2.69
2492 2654 8.877864 AATTCAGTTACACCATCCTATGAAAA 57.122 30.769 0.00 0.00 0.00 2.29
2493 2655 9.479549 AATTCAGTTACACCATCCTATGAAAAT 57.520 29.630 0.00 0.00 0.00 1.82
2494 2656 8.506168 TTCAGTTACACCATCCTATGAAAATC 57.494 34.615 0.00 0.00 0.00 2.17
2495 2657 7.861629 TCAGTTACACCATCCTATGAAAATCT 58.138 34.615 0.00 0.00 0.00 2.40
2496 2658 7.770433 TCAGTTACACCATCCTATGAAAATCTG 59.230 37.037 0.00 0.00 0.00 2.90
2497 2659 7.012704 CAGTTACACCATCCTATGAAAATCTGG 59.987 40.741 0.00 0.00 0.00 3.86
2498 2660 5.456921 ACACCATCCTATGAAAATCTGGT 57.543 39.130 0.00 0.00 35.98 4.00
2499 2661 5.762825 CACCATCCTATGAAAATCTGGTG 57.237 43.478 4.59 4.59 44.19 4.17
2500 2662 5.715439 ACCATCCTATGAAAATCTGGTGA 57.285 39.130 0.00 0.00 34.38 4.02
2501 2663 6.078456 ACCATCCTATGAAAATCTGGTGAA 57.922 37.500 0.00 0.00 34.38 3.18
2502 2664 6.493166 ACCATCCTATGAAAATCTGGTGAAA 58.507 36.000 0.00 0.00 34.38 2.69
2503 2665 7.128077 ACCATCCTATGAAAATCTGGTGAAAT 58.872 34.615 0.00 0.00 34.38 2.17
2504 2666 7.620888 ACCATCCTATGAAAATCTGGTGAAATT 59.379 33.333 0.00 0.00 34.38 1.82
2505 2667 8.480501 CCATCCTATGAAAATCTGGTGAAATTT 58.519 33.333 0.00 0.00 0.00 1.82
2506 2668 9.525409 CATCCTATGAAAATCTGGTGAAATTTC 57.475 33.333 11.41 11.41 34.98 2.17
2507 2669 8.648698 TCCTATGAAAATCTGGTGAAATTTCA 57.351 30.769 16.91 16.91 41.65 2.69
2508 2670 9.087871 TCCTATGAAAATCTGGTGAAATTTCAA 57.912 29.630 22.07 7.58 41.23 2.69
2509 2671 9.709495 CCTATGAAAATCTGGTGAAATTTCAAA 57.291 29.630 22.07 12.62 41.23 2.69
2511 2673 7.784633 TGAAAATCTGGTGAAATTTCAAACC 57.215 32.000 22.07 19.22 38.23 3.27
2512 2674 7.334090 TGAAAATCTGGTGAAATTTCAAACCA 58.666 30.769 22.07 22.31 38.23 3.67
2513 2675 7.992033 TGAAAATCTGGTGAAATTTCAAACCAT 59.008 29.630 23.54 13.12 38.23 3.55
2514 2676 7.733402 AAATCTGGTGAAATTTCAAACCATG 57.267 32.000 23.54 18.45 39.21 3.66
2515 2677 6.669125 ATCTGGTGAAATTTCAAACCATGA 57.331 33.333 23.54 21.48 39.21 3.07
2516 2678 5.841810 TCTGGTGAAATTTCAAACCATGAC 58.158 37.500 23.54 10.55 39.21 3.06
2517 2679 5.362143 TCTGGTGAAATTTCAAACCATGACA 59.638 36.000 23.54 12.37 39.21 3.58
2518 2680 5.982356 TGGTGAAATTTCAAACCATGACAA 58.018 33.333 22.07 0.00 39.21 3.18
2519 2681 6.047870 TGGTGAAATTTCAAACCATGACAAG 58.952 36.000 22.07 0.00 39.21 3.16
2531 2693 4.082125 ACCATGACAAGGATGAACTTTCC 58.918 43.478 3.17 0.00 0.00 3.13
2553 2715 3.243035 CGAGTTCCATTTTCAAGCACACA 60.243 43.478 0.00 0.00 0.00 3.72
2555 2717 3.446873 AGTTCCATTTTCAAGCACACACA 59.553 39.130 0.00 0.00 0.00 3.72
2564 2726 6.573664 TTTCAAGCACACACAGCTATTTAT 57.426 33.333 0.00 0.00 42.53 1.40
2588 2750 8.655935 ATTCCTTTTGAGTTATCTTTCACCAT 57.344 30.769 0.00 0.00 0.00 3.55
2591 2753 9.753674 TCCTTTTGAGTTATCTTTCACCATAAT 57.246 29.630 0.00 0.00 0.00 1.28
2595 2757 7.770801 TGAGTTATCTTTCACCATAATCGTG 57.229 36.000 0.00 0.00 0.00 4.35
2596 2758 6.257849 TGAGTTATCTTTCACCATAATCGTGC 59.742 38.462 0.00 0.00 0.00 5.34
2612 2774 3.959975 GCAGGCGTTTGCAACCGA 61.960 61.111 21.26 0.00 45.35 4.69
2624 2788 1.463056 TGCAACCGAGCTGTTATTTCG 59.537 47.619 0.00 0.00 34.99 3.46
2628 2792 3.034721 ACCGAGCTGTTATTTCGAACA 57.965 42.857 0.00 0.00 36.98 3.18
2645 2809 5.406649 TCGAACATGTTGTTTTCAAGCTTT 58.593 33.333 17.58 0.00 41.28 3.51
2659 2823 4.265073 TCAAGCTTTATTCTGCTCCCTTC 58.735 43.478 0.00 0.00 38.75 3.46
2700 2864 2.565834 TGTGTGAAGCTAGACTAACCCC 59.434 50.000 0.00 0.00 0.00 4.95
2701 2865 2.832733 GTGTGAAGCTAGACTAACCCCT 59.167 50.000 0.00 0.00 0.00 4.79
2702 2866 2.832129 TGTGAAGCTAGACTAACCCCTG 59.168 50.000 0.00 0.00 0.00 4.45
2703 2867 1.831736 TGAAGCTAGACTAACCCCTGC 59.168 52.381 0.00 0.00 0.00 4.85
2704 2868 2.112190 GAAGCTAGACTAACCCCTGCT 58.888 52.381 0.00 0.00 0.00 4.24
2705 2869 1.490574 AGCTAGACTAACCCCTGCTG 58.509 55.000 0.00 0.00 0.00 4.41
2706 2870 0.179070 GCTAGACTAACCCCTGCTGC 60.179 60.000 0.00 0.00 0.00 5.25
2707 2871 1.195115 CTAGACTAACCCCTGCTGCA 58.805 55.000 0.88 0.88 0.00 4.41
2708 2872 1.765314 CTAGACTAACCCCTGCTGCAT 59.235 52.381 1.31 0.00 0.00 3.96
2709 2873 0.543749 AGACTAACCCCTGCTGCATC 59.456 55.000 1.31 0.00 0.00 3.91
2710 2874 0.543749 GACTAACCCCTGCTGCATCT 59.456 55.000 1.31 0.00 0.00 2.90
2711 2875 0.543749 ACTAACCCCTGCTGCATCTC 59.456 55.000 1.31 0.00 0.00 2.75
2748 2912 2.167219 CGCAGGCACGTCGATTGAT 61.167 57.895 0.00 0.00 0.00 2.57
2754 2918 1.154205 GCACGTCGATTGATCAGGGG 61.154 60.000 0.00 0.00 0.00 4.79
2766 2930 0.603569 ATCAGGGGATCGCATACGTC 59.396 55.000 12.32 0.00 41.18 4.34
2907 3074 4.122046 CTGTGCGATGATGATTTAGGTGA 58.878 43.478 0.00 0.00 0.00 4.02
2915 3082 5.227569 TGATGATTTAGGTGAGTGTGTGT 57.772 39.130 0.00 0.00 0.00 3.72
2916 3083 4.996758 TGATGATTTAGGTGAGTGTGTGTG 59.003 41.667 0.00 0.00 0.00 3.82
2936 3109 5.514914 GTGTGTGTGGTGTTCTATTTTTGTG 59.485 40.000 0.00 0.00 0.00 3.33
3078 3256 3.502455 ATGTGCTGCGATGCGTGG 61.502 61.111 0.00 0.00 35.36 4.94
3079 3257 4.986645 TGTGCTGCGATGCGTGGT 62.987 61.111 0.00 0.00 35.36 4.16
3124 3306 2.829720 GTGACACCTACTACCCATGTGA 59.170 50.000 0.00 0.00 0.00 3.58
3178 3362 3.070018 GTGATCTCTTGTGGTCCAGTTG 58.930 50.000 0.00 0.00 0.00 3.16
3187 3371 0.770166 TGGTCCAGTTGGTCCATCCA 60.770 55.000 12.26 5.67 46.05 3.41
3204 3388 6.926272 GTCCATCCAAGATTCATCTGTACTAC 59.074 42.308 0.00 0.00 37.19 2.73
3206 3390 6.239036 CCATCCAAGATTCATCTGTACTACGA 60.239 42.308 0.00 0.00 37.19 3.43
3281 3465 6.197903 TCTAGTCTCCTCCTGATGAATTTCA 58.802 40.000 0.75 0.75 0.00 2.69
3321 3673 0.179000 GATGTCATGGGCTTCGACCT 59.821 55.000 0.00 0.00 0.00 3.85
3325 3677 0.614697 TCATGGGCTTCGACCTCTCA 60.615 55.000 0.00 0.00 0.00 3.27
3326 3678 0.250234 CATGGGCTTCGACCTCTCAA 59.750 55.000 0.00 0.00 0.00 3.02
3372 3724 5.004361 TCTGTTTTTGGGTGGATGGATTA 57.996 39.130 0.00 0.00 0.00 1.75
3381 3733 7.654022 TTGGGTGGATGGATTAAATTTCTAC 57.346 36.000 0.00 0.00 0.00 2.59
3407 3759 8.429493 TGCAAATTTGATTGTGTGTTATGAAA 57.571 26.923 22.31 0.00 32.80 2.69
3408 3760 9.053840 TGCAAATTTGATTGTGTGTTATGAAAT 57.946 25.926 22.31 0.00 32.80 2.17
3450 3807 5.562890 GCGAATAGTAGGATTTCAAATGCCC 60.563 44.000 0.00 0.00 0.00 5.36
3452 3809 6.934645 CGAATAGTAGGATTTCAAATGCCCTA 59.065 38.462 0.00 0.12 0.00 3.53
3453 3810 7.095187 CGAATAGTAGGATTTCAAATGCCCTAC 60.095 40.741 15.74 15.74 45.90 3.18
3456 3813 6.319141 GTAGGATTTCAAATGCCCTACATC 57.681 41.667 17.54 0.00 45.25 3.06
3458 3815 4.891756 AGGATTTCAAATGCCCTACATCAG 59.108 41.667 0.00 0.00 38.34 2.90
3460 3817 3.370840 TTCAAATGCCCTACATCAGCT 57.629 42.857 0.00 0.00 38.34 4.24
3461 3818 2.646930 TCAAATGCCCTACATCAGCTG 58.353 47.619 7.63 7.63 38.34 4.24
3462 3819 2.025981 TCAAATGCCCTACATCAGCTGT 60.026 45.455 14.67 0.00 38.34 4.40
3463 3820 2.048444 AATGCCCTACATCAGCTGTG 57.952 50.000 14.67 13.55 38.34 3.66
3464 3821 0.914644 ATGCCCTACATCAGCTGTGT 59.085 50.000 20.56 20.56 38.92 3.72
3465 3822 1.567357 TGCCCTACATCAGCTGTGTA 58.433 50.000 20.58 20.58 38.92 2.90
3466 3823 2.118679 TGCCCTACATCAGCTGTGTAT 58.881 47.619 21.50 5.32 38.92 2.29
3469 3944 2.487934 CCTACATCAGCTGTGTATGGC 58.512 52.381 21.50 0.00 38.92 4.40
3483 3958 0.249868 TATGGCAGCGGTCTACATGC 60.250 55.000 0.00 0.00 37.95 4.06
3546 4027 7.796054 TCCTAAATCTAAATGCTAGCAGACTT 58.204 34.615 23.89 17.26 0.00 3.01
3563 4044 5.932303 GCAGACTTAGACCATGAACTTAACA 59.068 40.000 0.00 0.00 0.00 2.41
3569 4050 5.319043 AGACCATGAACTTAACAGGGAAA 57.681 39.130 0.00 0.00 40.97 3.13
3596 4079 2.231478 TGCTCCTTGAAGGTACGAGAAG 59.769 50.000 11.60 0.16 36.53 2.85
3609 4092 0.730834 CGAGAAGTGGTGAGCGAGTG 60.731 60.000 0.00 0.00 0.00 3.51
3610 4093 0.315568 GAGAAGTGGTGAGCGAGTGT 59.684 55.000 0.00 0.00 0.00 3.55
3616 4099 1.726791 GTGGTGAGCGAGTGTATTGTG 59.273 52.381 0.00 0.00 0.00 3.33
3626 4109 4.260620 GCGAGTGTATTGTGTCTGTGTTTT 60.261 41.667 0.00 0.00 0.00 2.43
3638 4121 2.994417 TGTTTTCCATGGGCCGCC 60.994 61.111 13.02 0.00 0.00 6.13
3663 4146 3.220110 CCGACCAGCTATACCACTTCTA 58.780 50.000 0.00 0.00 0.00 2.10
3664 4147 3.004524 CCGACCAGCTATACCACTTCTAC 59.995 52.174 0.00 0.00 0.00 2.59
3666 4149 2.957006 ACCAGCTATACCACTTCTACCG 59.043 50.000 0.00 0.00 0.00 4.02
3667 4150 2.288273 CCAGCTATACCACTTCTACCGC 60.288 54.545 0.00 0.00 0.00 5.68
3683 4167 0.463833 CCGCTGTATTCACCCCCTTC 60.464 60.000 0.00 0.00 0.00 3.46
3718 4202 1.139734 CAGCCGTCTAGCGTCATGT 59.860 57.895 0.00 0.00 39.32 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 7.518689 CGAGGTCGGTGAACAGTAAAATAAAAA 60.519 37.037 0.00 0.00 35.37 1.94
9 10 6.073657 CGAGGTCGGTGAACAGTAAAATAAAA 60.074 38.462 0.00 0.00 35.37 1.52
10 11 5.406175 CGAGGTCGGTGAACAGTAAAATAAA 59.594 40.000 0.00 0.00 35.37 1.40
11 12 4.925054 CGAGGTCGGTGAACAGTAAAATAA 59.075 41.667 0.00 0.00 35.37 1.40
12 13 4.022068 ACGAGGTCGGTGAACAGTAAAATA 60.022 41.667 4.13 0.00 44.95 1.40
13 14 3.243975 ACGAGGTCGGTGAACAGTAAAAT 60.244 43.478 4.13 0.00 44.95 1.82
14 15 2.101249 ACGAGGTCGGTGAACAGTAAAA 59.899 45.455 4.13 0.00 44.95 1.52
15 16 1.682854 ACGAGGTCGGTGAACAGTAAA 59.317 47.619 4.13 0.00 44.95 2.01
16 17 1.001048 CACGAGGTCGGTGAACAGTAA 60.001 52.381 4.13 0.00 44.95 2.24
17 18 0.594602 CACGAGGTCGGTGAACAGTA 59.405 55.000 4.13 0.00 44.95 2.74
18 19 1.105167 TCACGAGGTCGGTGAACAGT 61.105 55.000 4.13 0.00 44.95 3.55
19 20 0.243907 ATCACGAGGTCGGTGAACAG 59.756 55.000 4.13 0.00 44.95 3.16
20 21 1.536940 TATCACGAGGTCGGTGAACA 58.463 50.000 4.13 0.00 44.95 3.18
21 22 2.163010 TCTTATCACGAGGTCGGTGAAC 59.837 50.000 4.13 0.00 44.95 3.18
22 23 2.439409 TCTTATCACGAGGTCGGTGAA 58.561 47.619 4.13 0.00 44.95 3.18
23 24 2.118313 TCTTATCACGAGGTCGGTGA 57.882 50.000 4.13 5.84 44.95 4.02
24 25 2.933495 TTCTTATCACGAGGTCGGTG 57.067 50.000 4.13 0.55 44.95 4.94
25 26 3.003068 CGTATTCTTATCACGAGGTCGGT 59.997 47.826 4.13 0.00 44.95 4.69
26 27 3.003068 ACGTATTCTTATCACGAGGTCGG 59.997 47.826 4.13 0.00 44.95 4.79
27 28 3.966844 CACGTATTCTTATCACGAGGTCG 59.033 47.826 0.00 0.00 46.33 4.79
28 29 4.733887 CACACGTATTCTTATCACGAGGTC 59.266 45.833 0.00 0.00 38.96 3.85
29 30 4.157289 ACACACGTATTCTTATCACGAGGT 59.843 41.667 0.00 0.00 38.96 3.85
30 31 4.669318 ACACACGTATTCTTATCACGAGG 58.331 43.478 0.00 0.00 38.96 4.63
31 32 4.733887 GGACACACGTATTCTTATCACGAG 59.266 45.833 0.00 0.00 38.96 4.18
32 33 4.397103 AGGACACACGTATTCTTATCACGA 59.603 41.667 0.00 0.00 38.96 4.35
33 34 4.669318 AGGACACACGTATTCTTATCACG 58.331 43.478 0.00 0.00 41.32 4.35
34 35 5.892568 AGAGGACACACGTATTCTTATCAC 58.107 41.667 0.00 0.00 0.00 3.06
35 36 6.525578 AAGAGGACACACGTATTCTTATCA 57.474 37.500 0.00 0.00 30.29 2.15
36 37 5.681982 CGAAGAGGACACACGTATTCTTATC 59.318 44.000 0.00 0.00 34.01 1.75
37 38 5.125097 ACGAAGAGGACACACGTATTCTTAT 59.875 40.000 0.00 0.00 34.01 1.73
38 39 4.456911 ACGAAGAGGACACACGTATTCTTA 59.543 41.667 0.00 0.00 34.01 2.10
39 40 3.255149 ACGAAGAGGACACACGTATTCTT 59.745 43.478 0.00 0.00 34.01 2.52
40 41 2.818432 ACGAAGAGGACACACGTATTCT 59.182 45.455 0.00 0.00 34.01 2.40
41 42 3.213249 ACGAAGAGGACACACGTATTC 57.787 47.619 0.00 0.00 35.49 1.75
42 43 4.201990 GGATACGAAGAGGACACACGTATT 60.202 45.833 0.00 0.00 45.55 1.89
44 45 2.679837 GGATACGAAGAGGACACACGTA 59.320 50.000 0.00 0.00 42.06 3.57
45 46 1.471684 GGATACGAAGAGGACACACGT 59.528 52.381 0.00 0.00 40.23 4.49
46 47 1.202268 GGGATACGAAGAGGACACACG 60.202 57.143 0.00 0.00 37.60 4.49
47 48 2.100989 AGGGATACGAAGAGGACACAC 58.899 52.381 0.00 0.00 37.60 3.82
48 49 2.526888 AGGGATACGAAGAGGACACA 57.473 50.000 0.00 0.00 37.60 3.72
49 50 3.889520 AAAGGGATACGAAGAGGACAC 57.110 47.619 0.00 0.00 37.60 3.67
50 51 5.482878 AGTTTAAAGGGATACGAAGAGGACA 59.517 40.000 0.00 0.00 37.60 4.02
51 52 5.975282 AGTTTAAAGGGATACGAAGAGGAC 58.025 41.667 0.00 0.00 37.60 3.85
52 53 6.616237 AAGTTTAAAGGGATACGAAGAGGA 57.384 37.500 0.00 0.00 37.60 3.71
53 54 6.653740 ACAAAGTTTAAAGGGATACGAAGAGG 59.346 38.462 0.00 0.00 37.60 3.69
54 55 7.668525 ACAAAGTTTAAAGGGATACGAAGAG 57.331 36.000 0.00 0.00 37.60 2.85
55 56 8.454570 AAACAAAGTTTAAAGGGATACGAAGA 57.545 30.769 0.00 0.00 37.60 2.87
56 57 8.347035 TGAAACAAAGTTTAAAGGGATACGAAG 58.653 33.333 0.00 0.00 37.60 3.79
57 58 8.223177 TGAAACAAAGTTTAAAGGGATACGAA 57.777 30.769 0.00 0.00 37.60 3.85
58 59 7.804843 TGAAACAAAGTTTAAAGGGATACGA 57.195 32.000 0.00 0.00 37.60 3.43
59 60 8.859517 TTTGAAACAAAGTTTAAAGGGATACG 57.140 30.769 0.00 0.00 37.60 3.06
60 61 9.811995 ACTTTGAAACAAAGTTTAAAGGGATAC 57.188 29.630 19.66 0.00 37.18 2.24
74 75 4.719273 AGGGATCCCAAACTTTGAAACAAA 59.281 37.500 32.69 0.00 38.92 2.83
119 120 0.673644 GCGCCCGAATATGCCAGTAT 60.674 55.000 0.00 0.00 0.00 2.12
121 122 2.591715 GCGCCCGAATATGCCAGT 60.592 61.111 0.00 0.00 0.00 4.00
122 123 2.591429 TGCGCCCGAATATGCCAG 60.591 61.111 4.18 0.00 0.00 4.85
146 147 1.068610 GTCCACATGCAAAAGCGCTTA 60.069 47.619 25.33 8.13 0.00 3.09
187 188 3.083997 ATCCAGAGTCCGGTGGGC 61.084 66.667 8.84 0.00 34.27 5.36
346 348 1.444553 GCGTTACTGAGCAGCGAGT 60.445 57.895 5.54 5.54 0.00 4.18
348 350 2.126071 GGCGTTACTGAGCAGCGA 60.126 61.111 0.00 0.00 34.54 4.93
350 352 1.374758 AGTGGCGTTACTGAGCAGC 60.375 57.895 0.00 0.00 34.54 5.25
351 353 4.996976 AGTGGCGTTACTGAGCAG 57.003 55.556 0.00 0.00 34.54 4.24
356 358 1.270412 TGTTACCCAGTGGCGTTACTG 60.270 52.381 2.61 12.42 45.93 2.74
357 359 1.050204 TGTTACCCAGTGGCGTTACT 58.950 50.000 2.61 0.00 33.59 2.24
358 360 2.103537 ATGTTACCCAGTGGCGTTAC 57.896 50.000 2.61 8.16 33.59 2.50
466 470 0.807667 ACGATGCCATGTCGCTCTTC 60.808 55.000 4.28 0.00 42.56 2.87
470 474 1.227263 GGTACGATGCCATGTCGCT 60.227 57.895 4.28 0.00 42.56 4.93
537 554 2.288025 GGGCGTGGGAGTTGGTAGA 61.288 63.158 0.00 0.00 0.00 2.59
737 764 2.422479 GTGAAAGAAACGAATAGGCCCC 59.578 50.000 0.00 0.00 0.00 5.80
738 765 3.344515 AGTGAAAGAAACGAATAGGCCC 58.655 45.455 0.00 0.00 0.00 5.80
739 766 4.000988 TGAGTGAAAGAAACGAATAGGCC 58.999 43.478 0.00 0.00 0.00 5.19
740 767 4.691216 AGTGAGTGAAAGAAACGAATAGGC 59.309 41.667 0.00 0.00 0.00 3.93
741 768 5.926542 TCAGTGAGTGAAAGAAACGAATAGG 59.073 40.000 0.00 0.00 29.64 2.57
742 769 6.642950 AGTCAGTGAGTGAAAGAAACGAATAG 59.357 38.462 0.00 0.00 36.74 1.73
743 770 6.420903 CAGTCAGTGAGTGAAAGAAACGAATA 59.579 38.462 21.38 0.00 36.74 1.75
744 771 5.235186 CAGTCAGTGAGTGAAAGAAACGAAT 59.765 40.000 21.38 0.00 36.74 3.34
745 772 4.566759 CAGTCAGTGAGTGAAAGAAACGAA 59.433 41.667 21.38 0.00 36.74 3.85
746 773 4.112634 CAGTCAGTGAGTGAAAGAAACGA 58.887 43.478 21.38 0.00 36.74 3.85
747 774 4.112634 TCAGTCAGTGAGTGAAAGAAACG 58.887 43.478 25.19 0.00 38.81 3.60
748 775 5.559799 GCATCAGTCAGTGAGTGAAAGAAAC 60.560 44.000 29.56 14.30 43.86 2.78
780 807 3.374058 CAGCTACAAGAAATGGTAACCGG 59.626 47.826 0.00 0.00 0.00 5.28
994 1047 3.061848 CCACGCCGCCATTTCCTT 61.062 61.111 0.00 0.00 0.00 3.36
1137 1213 3.367910 CCACGGGAGAGAGAAAGAGAAAG 60.368 52.174 0.00 0.00 0.00 2.62
1145 1221 0.832135 ACAAGCCACGGGAGAGAGAA 60.832 55.000 0.00 0.00 0.00 2.87
1236 1355 0.892358 TACCGCCGCGAGAGGATAAT 60.892 55.000 15.93 4.47 33.81 1.28
1237 1356 1.102809 TTACCGCCGCGAGAGGATAA 61.103 55.000 15.93 13.07 33.81 1.75
1406 1525 8.887036 TTATGAGCGTGACAATACTATCAAAT 57.113 30.769 0.00 0.00 0.00 2.32
1407 1526 8.600625 GTTTATGAGCGTGACAATACTATCAAA 58.399 33.333 0.00 0.00 0.00 2.69
1408 1527 7.762159 TGTTTATGAGCGTGACAATACTATCAA 59.238 33.333 0.00 0.00 0.00 2.57
1410 1529 7.694388 TGTTTATGAGCGTGACAATACTATC 57.306 36.000 0.00 0.00 0.00 2.08
1529 1658 5.063880 ACTTTGAAGGGCTAGTGTAAACTG 58.936 41.667 0.00 0.00 0.00 3.16
1531 1660 5.758924 CAACTTTGAAGGGCTAGTGTAAAC 58.241 41.667 0.00 0.00 0.00 2.01
1569 1698 5.009854 TGTCAAGCGTCAATAGATCATCA 57.990 39.130 0.00 0.00 0.00 3.07
1579 1708 4.521130 AGTAAGAGATGTCAAGCGTCAA 57.479 40.909 0.00 0.00 35.60 3.18
1584 1713 6.591834 ACATGTACAAGTAAGAGATGTCAAGC 59.408 38.462 1.03 0.00 0.00 4.01
1601 1730 6.764379 TGTCTCTACCAAATTGACATGTACA 58.236 36.000 0.00 0.00 33.45 2.90
1623 1760 2.540383 TCTGTAACCAGATGCCTCTGT 58.460 47.619 16.53 3.25 46.33 3.41
1648 1785 2.223112 GCACAATCACATAAGCAGGACG 60.223 50.000 0.00 0.00 0.00 4.79
1661 1798 6.712095 ACTTCTTGACTTATTCAGCACAATCA 59.288 34.615 0.00 0.00 34.94 2.57
1664 1801 6.147821 GCTACTTCTTGACTTATTCAGCACAA 59.852 38.462 0.00 0.00 34.94 3.33
1682 1819 2.260481 GCAGACTAACACGGCTACTTC 58.740 52.381 0.00 0.00 0.00 3.01
1683 1820 1.402456 CGCAGACTAACACGGCTACTT 60.402 52.381 0.00 0.00 0.00 2.24
1684 1821 0.170561 CGCAGACTAACACGGCTACT 59.829 55.000 0.00 0.00 0.00 2.57
1699 1836 5.734498 GCTAATTGTTTGACAAGATACGCAG 59.266 40.000 0.00 0.00 41.94 5.18
1703 1840 6.524586 GTGCAGCTAATTGTTTGACAAGATAC 59.475 38.462 0.00 0.00 41.94 2.24
1711 1848 8.654230 TTAATTTTGTGCAGCTAATTGTTTGA 57.346 26.923 9.09 0.00 0.00 2.69
1819 1956 3.138304 GCAAGAACAAAACAAATCCCCC 58.862 45.455 0.00 0.00 0.00 5.40
1821 1958 3.802866 TGGCAAGAACAAAACAAATCCC 58.197 40.909 0.00 0.00 0.00 3.85
1825 1962 4.636249 ACACTTGGCAAGAACAAAACAAA 58.364 34.783 32.50 0.00 0.00 2.83
1889 2030 0.039618 TGGCTTCCACATTCCTTCCC 59.960 55.000 0.00 0.00 0.00 3.97
1890 2031 2.149973 ATGGCTTCCACATTCCTTCC 57.850 50.000 0.00 0.00 35.80 3.46
1972 2122 7.460214 ACACCCTTCCTATATGGTTATCAAA 57.540 36.000 0.00 0.00 37.07 2.69
2019 2169 3.584848 ACACCAGAAAGGAGCAAGACTAT 59.415 43.478 0.00 0.00 41.22 2.12
2027 2177 2.498078 AGCTAGTACACCAGAAAGGAGC 59.502 50.000 0.00 0.00 41.22 4.70
2084 2237 0.690762 GGAAGCAGACCAAGGGTACA 59.309 55.000 0.00 0.00 35.25 2.90
2107 2260 6.942532 TCATGTATTTCAATGGAAGCTACC 57.057 37.500 0.00 0.00 33.82 3.18
2228 2387 3.129988 GGAAGGCCTGAAATTGATGACTG 59.870 47.826 5.69 0.00 0.00 3.51
2269 2428 9.158233 CACTTATTTTGGAACGAGGAAGTAATA 57.842 33.333 0.00 0.00 0.00 0.98
2270 2429 7.664318 ACACTTATTTTGGAACGAGGAAGTAAT 59.336 33.333 0.00 0.00 0.00 1.89
2271 2430 6.993902 ACACTTATTTTGGAACGAGGAAGTAA 59.006 34.615 0.00 0.00 0.00 2.24
2273 2432 5.374071 ACACTTATTTTGGAACGAGGAAGT 58.626 37.500 0.00 0.00 0.00 3.01
2274 2433 5.106673 GGACACTTATTTTGGAACGAGGAAG 60.107 44.000 0.00 0.00 0.00 3.46
2278 2437 4.324267 AGGGACACTTATTTTGGAACGAG 58.676 43.478 0.00 0.00 0.00 4.18
2280 2439 4.320935 CCAAGGGACACTTATTTTGGAACG 60.321 45.833 0.00 0.00 37.29 3.95
2281 2440 4.587262 ACCAAGGGACACTTATTTTGGAAC 59.413 41.667 7.95 0.00 37.29 3.62
2284 2443 5.321927 ACTACCAAGGGACACTTATTTTGG 58.678 41.667 0.00 0.00 37.29 3.28
2285 2444 6.938030 TGTACTACCAAGGGACACTTATTTTG 59.062 38.462 0.00 0.00 37.29 2.44
2286 2445 7.081857 TGTACTACCAAGGGACACTTATTTT 57.918 36.000 0.00 0.00 37.29 1.82
2288 2447 6.271624 AGTTGTACTACCAAGGGACACTTATT 59.728 38.462 3.72 0.00 37.29 1.40
2289 2448 5.783875 AGTTGTACTACCAAGGGACACTTAT 59.216 40.000 3.72 0.00 37.29 1.73
2292 2451 3.584294 AGTTGTACTACCAAGGGACACT 58.416 45.455 3.72 0.00 0.00 3.55
2293 2452 4.347360 AAGTTGTACTACCAAGGGACAC 57.653 45.455 3.72 0.00 0.00 3.67
2294 2453 4.900652 TGTAAGTTGTACTACCAAGGGACA 59.099 41.667 3.72 0.00 0.00 4.02
2295 2454 5.011431 AGTGTAAGTTGTACTACCAAGGGAC 59.989 44.000 3.72 0.00 0.00 4.46
2296 2455 5.149976 AGTGTAAGTTGTACTACCAAGGGA 58.850 41.667 3.72 0.00 0.00 4.20
2298 2457 7.797038 AAAAGTGTAAGTTGTACTACCAAGG 57.203 36.000 3.72 0.00 0.00 3.61
2322 2481 2.640826 AGTACTCCATCCGTCCCAAAAA 59.359 45.455 0.00 0.00 0.00 1.94
2323 2482 2.262637 AGTACTCCATCCGTCCCAAAA 58.737 47.619 0.00 0.00 0.00 2.44
2324 2483 1.946984 AGTACTCCATCCGTCCCAAA 58.053 50.000 0.00 0.00 0.00 3.28
2325 2484 1.946984 AAGTACTCCATCCGTCCCAA 58.053 50.000 0.00 0.00 0.00 4.12
2326 2485 2.024655 ACTAAGTACTCCATCCGTCCCA 60.025 50.000 0.00 0.00 0.00 4.37
2327 2486 2.664015 ACTAAGTACTCCATCCGTCCC 58.336 52.381 0.00 0.00 0.00 4.46
2328 2487 6.402456 AAATACTAAGTACTCCATCCGTCC 57.598 41.667 0.00 0.00 0.00 4.79
2329 2488 7.763071 ACAAAAATACTAAGTACTCCATCCGTC 59.237 37.037 0.00 0.00 0.00 4.79
2330 2489 7.618137 ACAAAAATACTAAGTACTCCATCCGT 58.382 34.615 0.00 0.00 0.00 4.69
2331 2490 9.590451 TTACAAAAATACTAAGTACTCCATCCG 57.410 33.333 0.00 0.00 0.00 4.18
2352 2511 6.449635 AGCTGATTTGTTTGTCACTTACAA 57.550 33.333 0.00 0.00 46.41 2.41
2353 2512 7.744087 ATAGCTGATTTGTTTGTCACTTACA 57.256 32.000 0.00 0.00 35.88 2.41
2354 2513 9.760660 CTAATAGCTGATTTGTTTGTCACTTAC 57.239 33.333 0.00 0.00 0.00 2.34
2355 2514 8.450964 GCTAATAGCTGATTTGTTTGTCACTTA 58.549 33.333 4.79 0.00 38.45 2.24
2356 2515 7.308435 GCTAATAGCTGATTTGTTTGTCACTT 58.692 34.615 4.79 0.00 38.45 3.16
2357 2516 6.127897 GGCTAATAGCTGATTTGTTTGTCACT 60.128 38.462 12.41 0.00 41.99 3.41
2358 2517 6.030228 GGCTAATAGCTGATTTGTTTGTCAC 58.970 40.000 12.41 0.00 41.99 3.67
2359 2518 5.709631 TGGCTAATAGCTGATTTGTTTGTCA 59.290 36.000 12.41 0.00 41.99 3.58
2360 2519 6.194796 TGGCTAATAGCTGATTTGTTTGTC 57.805 37.500 12.41 0.00 41.99 3.18
2361 2520 6.567050 CATGGCTAATAGCTGATTTGTTTGT 58.433 36.000 12.41 0.00 41.99 2.83
2362 2521 5.461078 GCATGGCTAATAGCTGATTTGTTTG 59.539 40.000 12.41 0.00 41.99 2.93
2363 2522 5.361857 AGCATGGCTAATAGCTGATTTGTTT 59.638 36.000 12.41 0.00 41.99 2.83
2364 2523 4.891756 AGCATGGCTAATAGCTGATTTGTT 59.108 37.500 12.41 0.00 41.99 2.83
2383 2542 1.108776 GTTGTCATGATGGGCAGCAT 58.891 50.000 0.00 0.00 38.04 3.79
2401 2563 9.965902 AGTCAATGGATGTCTAAAATTCTTAGT 57.034 29.630 7.05 0.00 0.00 2.24
2415 2577 1.137872 GAGCTCCGAGTCAATGGATGT 59.862 52.381 0.87 0.00 32.83 3.06
2421 2583 0.453793 CACGAGAGCTCCGAGTCAAT 59.546 55.000 25.01 0.00 0.00 2.57
2424 2586 1.984321 GACCACGAGAGCTCCGAGTC 61.984 65.000 25.01 23.48 0.00 3.36
2426 2588 2.795297 GACCACGAGAGCTCCGAG 59.205 66.667 25.01 18.68 0.00 4.63
2430 2592 1.863662 TTGACCGACCACGAGAGCTC 61.864 60.000 5.27 5.27 42.66 4.09
2437 2599 1.911293 CTGCCAATTGACCGACCACG 61.911 60.000 7.12 0.00 39.43 4.94
2440 2602 0.734889 CATCTGCCAATTGACCGACC 59.265 55.000 7.12 0.00 0.00 4.79
2456 2618 5.122396 GGTGTAACTGAATTCACCTGTCATC 59.878 44.000 3.38 0.00 44.57 2.92
2458 2620 4.385825 GGTGTAACTGAATTCACCTGTCA 58.614 43.478 3.38 0.00 44.57 3.58
2464 2626 7.047891 TCATAGGATGGTGTAACTGAATTCAC 58.952 38.462 3.38 0.00 36.74 3.18
2465 2627 7.194112 TCATAGGATGGTGTAACTGAATTCA 57.806 36.000 8.12 8.12 36.74 2.57
2466 2628 8.506168 TTTCATAGGATGGTGTAACTGAATTC 57.494 34.615 0.00 0.00 36.74 2.17
2467 2629 8.877864 TTTTCATAGGATGGTGTAACTGAATT 57.122 30.769 0.00 0.00 36.74 2.17
2468 2630 9.125026 GATTTTCATAGGATGGTGTAACTGAAT 57.875 33.333 0.00 0.00 36.74 2.57
2469 2631 8.328758 AGATTTTCATAGGATGGTGTAACTGAA 58.671 33.333 0.00 0.00 36.74 3.02
2470 2632 7.770433 CAGATTTTCATAGGATGGTGTAACTGA 59.230 37.037 0.00 0.00 36.74 3.41
2471 2633 7.012704 CCAGATTTTCATAGGATGGTGTAACTG 59.987 40.741 0.00 0.00 36.74 3.16
2472 2634 7.056635 CCAGATTTTCATAGGATGGTGTAACT 58.943 38.462 0.00 0.00 36.74 2.24
2473 2635 6.828785 ACCAGATTTTCATAGGATGGTGTAAC 59.171 38.462 0.00 0.00 38.13 2.50
2474 2636 6.969043 ACCAGATTTTCATAGGATGGTGTAA 58.031 36.000 0.00 0.00 38.13 2.41
2475 2637 6.575244 ACCAGATTTTCATAGGATGGTGTA 57.425 37.500 0.00 0.00 38.13 2.90
2476 2638 5.456921 ACCAGATTTTCATAGGATGGTGT 57.543 39.130 0.00 0.00 38.13 4.16
2478 2640 5.715439 TCACCAGATTTTCATAGGATGGT 57.285 39.130 0.00 0.00 40.10 3.55
2479 2641 7.592885 ATTTCACCAGATTTTCATAGGATGG 57.407 36.000 0.00 0.00 0.00 3.51
2480 2642 9.525409 GAAATTTCACCAGATTTTCATAGGATG 57.475 33.333 13.40 0.00 31.59 3.51
2481 2643 9.258629 TGAAATTTCACCAGATTTTCATAGGAT 57.741 29.630 16.91 0.00 34.24 3.24
2482 2644 8.648698 TGAAATTTCACCAGATTTTCATAGGA 57.351 30.769 16.91 0.00 34.24 2.94
2483 2645 9.709495 TTTGAAATTTCACCAGATTTTCATAGG 57.291 29.630 20.35 0.00 36.73 2.57
2485 2647 9.487790 GGTTTGAAATTTCACCAGATTTTCATA 57.512 29.630 20.35 0.00 36.73 2.15
2486 2648 7.992033 TGGTTTGAAATTTCACCAGATTTTCAT 59.008 29.630 20.35 0.00 36.73 2.57
2487 2649 7.334090 TGGTTTGAAATTTCACCAGATTTTCA 58.666 30.769 20.35 6.50 36.83 2.69
2488 2650 7.784633 TGGTTTGAAATTTCACCAGATTTTC 57.215 32.000 20.35 4.29 36.83 2.29
2489 2651 7.992033 TCATGGTTTGAAATTTCACCAGATTTT 59.008 29.630 25.86 12.93 36.95 1.82
2490 2652 7.442062 GTCATGGTTTGAAATTTCACCAGATTT 59.558 33.333 25.86 13.21 36.95 2.17
2491 2653 6.930722 GTCATGGTTTGAAATTTCACCAGATT 59.069 34.615 25.86 13.47 36.95 2.40
2492 2654 6.041865 TGTCATGGTTTGAAATTTCACCAGAT 59.958 34.615 25.86 14.01 36.95 2.90
2493 2655 5.362143 TGTCATGGTTTGAAATTTCACCAGA 59.638 36.000 25.86 20.98 36.95 3.86
2494 2656 5.599732 TGTCATGGTTTGAAATTTCACCAG 58.400 37.500 25.86 19.70 36.95 4.00
2495 2657 5.604758 TGTCATGGTTTGAAATTTCACCA 57.395 34.783 24.79 24.79 37.62 4.17
2496 2658 5.466393 CCTTGTCATGGTTTGAAATTTCACC 59.534 40.000 20.35 18.47 36.83 4.02
2497 2659 6.279882 TCCTTGTCATGGTTTGAAATTTCAC 58.720 36.000 20.35 10.03 36.83 3.18
2498 2660 6.477053 TCCTTGTCATGGTTTGAAATTTCA 57.523 33.333 16.91 16.91 35.70 2.69
2499 2661 7.153985 TCATCCTTGTCATGGTTTGAAATTTC 58.846 34.615 11.41 11.41 35.70 2.17
2500 2662 7.065120 TCATCCTTGTCATGGTTTGAAATTT 57.935 32.000 4.76 0.00 35.70 1.82
2501 2663 6.669125 TCATCCTTGTCATGGTTTGAAATT 57.331 33.333 4.76 0.00 35.70 1.82
2502 2664 6.268387 AGTTCATCCTTGTCATGGTTTGAAAT 59.732 34.615 18.50 16.44 35.70 2.17
2503 2665 5.598005 AGTTCATCCTTGTCATGGTTTGAAA 59.402 36.000 18.50 8.14 35.70 2.69
2504 2666 5.139727 AGTTCATCCTTGTCATGGTTTGAA 58.860 37.500 15.45 15.45 35.70 2.69
2505 2667 4.728772 AGTTCATCCTTGTCATGGTTTGA 58.271 39.130 4.76 6.80 0.00 2.69
2506 2668 5.458041 AAGTTCATCCTTGTCATGGTTTG 57.542 39.130 4.76 4.86 0.00 2.93
2507 2669 5.011023 GGAAAGTTCATCCTTGTCATGGTTT 59.989 40.000 4.76 0.00 33.98 3.27
2508 2670 4.524328 GGAAAGTTCATCCTTGTCATGGTT 59.476 41.667 4.76 0.00 33.98 3.67
2509 2671 4.082125 GGAAAGTTCATCCTTGTCATGGT 58.918 43.478 4.76 0.00 33.98 3.55
2510 2672 3.127548 CGGAAAGTTCATCCTTGTCATGG 59.872 47.826 0.00 0.00 34.66 3.66
2511 2673 4.002982 TCGGAAAGTTCATCCTTGTCATG 58.997 43.478 0.00 0.00 34.66 3.07
2512 2674 4.256920 CTCGGAAAGTTCATCCTTGTCAT 58.743 43.478 0.00 0.00 34.66 3.06
2513 2675 3.071023 ACTCGGAAAGTTCATCCTTGTCA 59.929 43.478 0.00 0.00 33.03 3.58
2514 2676 3.665190 ACTCGGAAAGTTCATCCTTGTC 58.335 45.455 0.00 0.00 33.03 3.18
2515 2677 3.771577 ACTCGGAAAGTTCATCCTTGT 57.228 42.857 0.00 0.00 33.03 3.16
2531 2693 3.243035 TGTGTGCTTGAAAATGGAACTCG 60.243 43.478 0.00 0.00 0.00 4.18
2564 2726 9.581289 TTATGGTGAAAGATAACTCAAAAGGAA 57.419 29.630 0.00 0.00 0.00 3.36
2588 2750 1.499949 GCAAACGCCTGCACGATTA 59.500 52.632 3.48 0.00 42.17 1.75
2607 2769 3.395639 TGTTCGAAATAACAGCTCGGTT 58.604 40.909 0.00 0.00 34.50 4.44
2609 2771 3.370978 ACATGTTCGAAATAACAGCTCGG 59.629 43.478 0.00 0.00 42.33 4.63
2610 2772 4.584029 ACATGTTCGAAATAACAGCTCG 57.416 40.909 0.00 0.00 42.33 5.03
2611 2773 5.689819 ACAACATGTTCGAAATAACAGCTC 58.310 37.500 8.48 0.00 42.33 4.09
2612 2774 5.689383 ACAACATGTTCGAAATAACAGCT 57.311 34.783 8.48 0.00 42.33 4.24
2624 2788 9.034544 AGAATAAAGCTTGAAAACAACATGTTC 57.965 29.630 8.48 0.00 40.14 3.18
2628 2792 7.212274 AGCAGAATAAAGCTTGAAAACAACAT 58.788 30.769 0.00 0.00 38.01 2.71
2645 2809 4.240881 AGCAAATGAAGGGAGCAGAATA 57.759 40.909 0.00 0.00 0.00 1.75
2659 2823 3.798337 ACAAGAAACGAAGCAAGCAAATG 59.202 39.130 0.00 0.00 0.00 2.32
2700 2864 3.102985 GCAGCAGAGATGCAGCAG 58.897 61.111 4.07 0.00 44.90 4.24
2705 2869 2.836262 ACAGATTAGCAGCAGAGATGC 58.164 47.619 0.00 0.00 45.98 3.91
2706 2870 4.874396 TCAAACAGATTAGCAGCAGAGATG 59.126 41.667 0.00 0.00 0.00 2.90
2707 2871 4.874966 GTCAAACAGATTAGCAGCAGAGAT 59.125 41.667 0.00 0.00 0.00 2.75
2708 2872 4.248859 GTCAAACAGATTAGCAGCAGAGA 58.751 43.478 0.00 0.00 0.00 3.10
2709 2873 3.061831 CGTCAAACAGATTAGCAGCAGAG 59.938 47.826 0.00 0.00 0.00 3.35
2710 2874 2.995939 CGTCAAACAGATTAGCAGCAGA 59.004 45.455 0.00 0.00 0.00 4.26
2711 2875 2.475187 GCGTCAAACAGATTAGCAGCAG 60.475 50.000 0.00 0.00 0.00 4.24
2748 2912 1.461091 GGACGTATGCGATCCCCTGA 61.461 60.000 11.07 0.00 42.00 3.86
2754 2918 1.063806 GCATCAGGACGTATGCGATC 58.936 55.000 11.07 3.75 39.15 3.69
2766 2930 3.292481 AAGGGCCACCAGCATCAGG 62.292 63.158 6.18 0.00 46.50 3.86
2907 3074 1.003118 AGAACACCACACACACACACT 59.997 47.619 0.00 0.00 0.00 3.55
2915 3082 5.645624 CACACAAAAATAGAACACCACACA 58.354 37.500 0.00 0.00 0.00 3.72
2916 3083 4.502645 GCACACAAAAATAGAACACCACAC 59.497 41.667 0.00 0.00 0.00 3.82
2936 3109 1.860950 ACATAATCATCTGACGCGCAC 59.139 47.619 5.73 0.41 0.00 5.34
3078 3256 2.949644 ACTTGCAAAACCAGACCTACAC 59.050 45.455 0.00 0.00 0.00 2.90
3079 3257 3.290948 ACTTGCAAAACCAGACCTACA 57.709 42.857 0.00 0.00 0.00 2.74
3124 3306 3.661648 AGGGGCCGGACAAGCATT 61.662 61.111 11.00 0.00 0.00 3.56
3178 3362 4.162040 ACAGATGAATCTTGGATGGACC 57.838 45.455 0.00 0.00 34.22 4.46
3187 3371 6.817140 GGGTTTTCGTAGTACAGATGAATCTT 59.183 38.462 0.38 0.00 34.22 2.40
3204 3388 8.601845 AATGAAAAGGAATAAAAGGGTTTTCG 57.398 30.769 0.00 0.00 36.92 3.46
3237 3421 5.740290 AGAGAACCGAATTACTCCAGAAA 57.260 39.130 0.00 0.00 0.00 2.52
3247 3431 3.955551 GGAGGAGACTAGAGAACCGAATT 59.044 47.826 0.00 0.00 44.43 2.17
3253 3437 4.787551 TCATCAGGAGGAGACTAGAGAAC 58.212 47.826 0.00 0.00 44.43 3.01
3281 3465 5.534207 TCTCACATTGGCAGTTTCATTTT 57.466 34.783 0.00 0.00 0.00 1.82
3295 3479 3.285484 GAAGCCCATGACATCTCACATT 58.715 45.455 0.00 0.00 0.00 2.71
3372 3724 9.328845 ACACAATCAAATTTGCAGTAGAAATTT 57.671 25.926 13.54 1.11 41.52 1.82
3381 3733 7.640616 TCATAACACACAATCAAATTTGCAG 57.359 32.000 13.54 7.87 0.00 4.41
3407 3759 9.941664 CTATTCGCATCTGAATTTGTCTTTTAT 57.058 29.630 0.00 0.00 39.27 1.40
3408 3760 8.946085 ACTATTCGCATCTGAATTTGTCTTTTA 58.054 29.630 0.00 0.00 39.27 1.52
3427 3784 5.765182 AGGGCATTTGAAATCCTACTATTCG 59.235 40.000 0.00 0.00 0.00 3.34
3450 3807 3.129109 CTGCCATACACAGCTGATGTAG 58.871 50.000 23.35 14.03 41.41 2.74
3452 3809 2.034104 CTGCCATACACAGCTGATGT 57.966 50.000 23.35 21.57 45.43 3.06
3460 3817 0.174845 GTAGACCGCTGCCATACACA 59.825 55.000 0.00 0.00 0.00 3.72
3461 3818 0.174845 TGTAGACCGCTGCCATACAC 59.825 55.000 0.00 0.00 0.00 2.90
3462 3819 1.119684 ATGTAGACCGCTGCCATACA 58.880 50.000 0.00 0.00 0.00 2.29
3463 3820 1.502231 CATGTAGACCGCTGCCATAC 58.498 55.000 0.00 0.00 0.00 2.39
3464 3821 0.249868 GCATGTAGACCGCTGCCATA 60.250 55.000 0.00 0.00 0.00 2.74
3465 3822 1.524621 GCATGTAGACCGCTGCCAT 60.525 57.895 0.00 0.00 0.00 4.40
3466 3823 2.125147 GCATGTAGACCGCTGCCA 60.125 61.111 0.00 0.00 0.00 4.92
3469 3944 0.462581 ACATGGCATGTAGACCGCTG 60.463 55.000 30.56 3.43 42.78 5.18
3473 3948 1.065491 TGTGGACATGGCATGTAGACC 60.065 52.381 31.48 26.74 45.03 3.85
3483 3958 1.031235 TGCTGTTGTTGTGGACATGG 58.969 50.000 0.00 0.00 38.26 3.66
3507 3982 5.923204 AGATTTAGGAATACAGGAGCAGTG 58.077 41.667 0.00 0.00 0.00 3.66
3546 4027 6.271391 TCTTTCCCTGTTAAGTTCATGGTCTA 59.729 38.462 0.00 0.00 0.00 2.59
3563 4044 5.444176 CTTCAAGGAGCAATATCTTTCCCT 58.556 41.667 0.00 0.00 0.00 4.20
3569 4050 4.649674 TCGTACCTTCAAGGAGCAATATCT 59.350 41.667 11.59 0.00 37.67 1.98
3596 4079 1.726791 CACAATACACTCGCTCACCAC 59.273 52.381 0.00 0.00 0.00 4.16
3609 4092 5.460646 CCATGGAAAACACAGACACAATAC 58.539 41.667 5.56 0.00 0.00 1.89
3610 4093 4.522405 CCCATGGAAAACACAGACACAATA 59.478 41.667 15.22 0.00 0.00 1.90
3616 4099 0.603065 GGCCCATGGAAAACACAGAC 59.397 55.000 15.22 0.00 0.00 3.51
3638 4121 1.612463 GTGGTATAGCTGGTCGGTAGG 59.388 57.143 0.00 0.00 0.00 3.18
3649 4132 2.361438 ACAGCGGTAGAAGTGGTATAGC 59.639 50.000 0.00 0.00 0.00 2.97
3650 4133 5.961396 ATACAGCGGTAGAAGTGGTATAG 57.039 43.478 2.53 0.00 31.88 1.31
3651 4134 5.829391 TGAATACAGCGGTAGAAGTGGTATA 59.171 40.000 2.53 0.00 31.88 1.47
3663 4146 1.205460 AAGGGGGTGAATACAGCGGT 61.205 55.000 0.00 0.00 44.31 5.68
3664 4147 0.463833 GAAGGGGGTGAATACAGCGG 60.464 60.000 0.00 0.00 44.31 5.52
3666 4149 1.682087 GGTGAAGGGGGTGAATACAGC 60.682 57.143 0.00 0.00 42.88 4.40
3667 4150 1.064685 GGGTGAAGGGGGTGAATACAG 60.065 57.143 0.00 0.00 0.00 2.74
3683 4167 0.036010 CTGGAGCAGTGGTTAGGGTG 60.036 60.000 0.00 0.00 0.00 4.61
3718 4202 0.042731 ACCCTTGTAGCTAGGCTCCA 59.957 55.000 0.00 0.00 40.44 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.