Multiple sequence alignment - TraesCS7B01G238500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G238500 chr7B 100.000 3468 0 0 1423 4890 443849790 443853257 0.000000e+00 6405.0
1 TraesCS7B01G238500 chr7B 100.000 1102 0 0 1 1102 443848368 443849469 0.000000e+00 2036.0
2 TraesCS7B01G238500 chr7A 91.521 1545 92 24 1423 2945 506685843 506684316 0.000000e+00 2091.0
3 TraesCS7B01G238500 chr7A 91.528 1499 82 22 2979 4469 506684173 506682712 0.000000e+00 2023.0
4 TraesCS7B01G238500 chr7A 88.037 535 54 9 11 538 223417405 223417936 4.160000e-175 625.0
5 TraesCS7B01G238500 chr7A 89.655 319 9 8 797 1102 506686283 506685976 7.680000e-103 385.0
6 TraesCS7B01G238500 chr7A 93.750 64 1 1 691 751 506686372 506686309 5.210000e-15 93.5
7 TraesCS7B01G238500 chr7D 93.449 1206 59 11 1423 2612 426747903 426749104 0.000000e+00 1772.0
8 TraesCS7B01G238500 chr7D 89.606 1116 60 18 3692 4784 426750302 426751384 0.000000e+00 1367.0
9 TraesCS7B01G238500 chr7D 91.095 685 43 5 2974 3655 426749427 426750096 0.000000e+00 911.0
10 TraesCS7B01G238500 chr7D 97.059 306 8 1 797 1102 426747463 426747767 9.390000e-142 514.0
11 TraesCS7B01G238500 chr7D 92.424 66 2 1 692 754 426747383 426747448 1.870000e-14 91.6
12 TraesCS7B01G238500 chr1D 88.743 533 54 5 11 538 57062427 57062958 0.000000e+00 647.0
13 TraesCS7B01G238500 chr1D 88.073 545 55 8 1 538 295991108 295991649 5.340000e-179 638.0
14 TraesCS7B01G238500 chr1D 94.937 79 3 1 4812 4890 212076080 212076157 6.650000e-24 122.0
15 TraesCS7B01G238500 chr1D 92.727 55 4 0 2611 2665 465974049 465974103 4.060000e-11 80.5
16 TraesCS7B01G238500 chr5D 87.868 544 59 6 1 538 218263578 218263036 2.480000e-177 632.0
17 TraesCS7B01G238500 chr5D 87.661 543 61 5 1 538 555954540 555953999 1.160000e-175 627.0
18 TraesCS7B01G238500 chr5D 87.616 541 60 6 1 536 476322604 476322066 5.380000e-174 621.0
19 TraesCS7B01G238500 chr5D 86.842 76 10 0 4813 4888 313154043 313153968 8.720000e-13 86.1
20 TraesCS7B01G238500 chr3D 88.202 534 55 7 10 538 251093160 251093690 8.930000e-177 630.0
21 TraesCS7B01G238500 chr3D 87.778 540 60 5 1 535 471568156 471568694 1.160000e-175 627.0
22 TraesCS7B01G238500 chr3D 95.833 48 2 0 4832 4879 43241455 43241502 1.460000e-10 78.7
23 TraesCS7B01G238500 chr2D 88.202 534 54 8 10 538 308493271 308492742 3.210000e-176 628.0
24 TraesCS7B01G238500 chr4B 92.308 78 6 0 4812 4889 608941183 608941260 1.440000e-20 111.0
25 TraesCS7B01G238500 chr4B 89.062 64 6 1 2612 2674 486779886 486779949 1.460000e-10 78.7
26 TraesCS7B01G238500 chr5B 92.000 75 6 0 4813 4887 48308118 48308192 6.690000e-19 106.0
27 TraesCS7B01G238500 chr5B 85.526 76 11 0 4813 4888 360863489 360863414 4.060000e-11 80.5
28 TraesCS7B01G238500 chr5B 88.889 63 6 1 2613 2674 195737708 195737646 5.250000e-10 76.8
29 TraesCS7B01G238500 chr5B 88.889 63 6 1 2613 2674 671876782 671876720 5.250000e-10 76.8
30 TraesCS7B01G238500 chr6B 91.045 67 4 2 2610 2674 321280330 321280396 6.740000e-14 89.8
31 TraesCS7B01G238500 chr2B 91.803 61 5 0 4828 4888 146907048 146907108 8.720000e-13 86.1
32 TraesCS7B01G238500 chr2A 90.625 64 5 1 2612 2674 371335240 371335177 3.140000e-12 84.2
33 TraesCS7B01G238500 chr3B 88.406 69 7 1 555 623 391651353 391651420 1.130000e-11 82.4
34 TraesCS7B01G238500 chr3B 89.062 64 7 0 2611 2674 540201823 540201760 4.060000e-11 80.5
35 TraesCS7B01G238500 chr3B 93.878 49 3 0 4831 4879 67375871 67375919 1.890000e-09 75.0
36 TraesCS7B01G238500 chr1A 88.406 69 7 1 557 625 559543298 559543231 1.130000e-11 82.4
37 TraesCS7B01G238500 chr3A 89.231 65 6 1 2611 2674 628192211 628192275 4.060000e-11 80.5
38 TraesCS7B01G238500 chr6A 88.710 62 6 1 2614 2674 430574743 430574682 1.890000e-09 75.0
39 TraesCS7B01G238500 chr5A 87.097 62 4 1 4812 4873 339749250 339749307 3.160000e-07 67.6
40 TraesCS7B01G238500 chr1B 88.679 53 4 2 557 609 505963590 505963540 4.090000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G238500 chr7B 443848368 443853257 4889 False 4220.500 6405 100.0000 1 4890 2 chr7B.!!$F1 4889
1 TraesCS7B01G238500 chr7A 506682712 506686372 3660 True 1148.125 2091 91.6135 691 4469 4 chr7A.!!$R1 3778
2 TraesCS7B01G238500 chr7A 223417405 223417936 531 False 625.000 625 88.0370 11 538 1 chr7A.!!$F1 527
3 TraesCS7B01G238500 chr7D 426747383 426751384 4001 False 931.120 1772 92.7266 692 4784 5 chr7D.!!$F1 4092
4 TraesCS7B01G238500 chr1D 57062427 57062958 531 False 647.000 647 88.7430 11 538 1 chr1D.!!$F1 527
5 TraesCS7B01G238500 chr1D 295991108 295991649 541 False 638.000 638 88.0730 1 538 1 chr1D.!!$F3 537
6 TraesCS7B01G238500 chr5D 218263036 218263578 542 True 632.000 632 87.8680 1 538 1 chr5D.!!$R1 537
7 TraesCS7B01G238500 chr5D 555953999 555954540 541 True 627.000 627 87.6610 1 538 1 chr5D.!!$R4 537
8 TraesCS7B01G238500 chr5D 476322066 476322604 538 True 621.000 621 87.6160 1 536 1 chr5D.!!$R3 535
9 TraesCS7B01G238500 chr3D 251093160 251093690 530 False 630.000 630 88.2020 10 538 1 chr3D.!!$F2 528
10 TraesCS7B01G238500 chr3D 471568156 471568694 538 False 627.000 627 87.7780 1 535 1 chr3D.!!$F3 534
11 TraesCS7B01G238500 chr2D 308492742 308493271 529 True 628.000 628 88.2020 10 538 1 chr2D.!!$R1 528

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
616 625 0.037447 TTGTCCGGATGTGGAATGCA 59.963 50.0 7.81 0.0 40.44 3.96 F
759 771 0.178984 AACGGACACGGGGGATTTTT 60.179 50.0 0.00 0.0 46.48 1.94 F
1958 2002 0.309922 GGCTCAATGACATGCCATCG 59.690 55.0 9.77 0.0 44.34 3.84 F
2667 2735 0.259938 GCATGGTCCAGGGAAGGATT 59.740 55.0 5.53 0.0 40.42 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1958 2002 1.416401 TCCCTGAATCCGCCATAGTTC 59.584 52.381 0.0 0.0 0.00 3.01 R
2651 2719 0.252513 TCGAATCCTTCCCTGGACCA 60.253 55.000 0.0 0.0 39.17 4.02 R
2807 2882 1.395954 CATCAATGTCGCAGTCCACAG 59.604 52.381 0.0 0.0 0.00 3.66 R
4648 5056 1.337635 CGATGCCCTAGAATGCCTCTC 60.338 57.143 0.0 0.0 35.41 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
108 113 1.543802 AGGCTTCTCTCTCGAACACAG 59.456 52.381 0.00 0.00 0.00 3.66
152 157 6.699575 ATTACTGTTGGGCAATTGATAGAC 57.300 37.500 10.34 2.75 0.00 2.59
181 186 7.361201 GCGCATAGTTATGATGTTATTCATGGT 60.361 37.037 0.30 0.00 36.97 3.55
250 256 6.256819 TCCTGCCTGCATCTACTACTATTAT 58.743 40.000 0.00 0.00 0.00 1.28
266 272 8.475639 ACTACTATTATTCCAACAATCGACTGT 58.524 33.333 0.00 0.00 0.00 3.55
376 382 7.725251 TCAAGCAATATGAATAAACCCCATTC 58.275 34.615 0.00 0.00 33.78 2.67
377 383 7.344093 TCAAGCAATATGAATAAACCCCATTCA 59.656 33.333 0.66 0.66 44.26 2.57
438 447 2.030027 TTCTGTCACTGGGTGAGGAT 57.970 50.000 0.27 0.00 43.57 3.24
474 483 1.701847 ACATCACAAAGCACCTCTCCT 59.298 47.619 0.00 0.00 0.00 3.69
511 520 6.065374 TCAATCTAGTTAGCCAAACCAAACA 58.935 36.000 0.00 0.00 39.03 2.83
514 523 5.061179 TCTAGTTAGCCAAACCAAACAGAC 58.939 41.667 0.00 0.00 39.03 3.51
538 547 6.533367 ACAGATCGAAGAGAAATACAAAGCTC 59.467 38.462 0.00 0.00 43.63 4.09
539 548 6.019156 CAGATCGAAGAGAAATACAAAGCTCC 60.019 42.308 0.00 0.00 43.63 4.70
540 549 4.174009 TCGAAGAGAAATACAAAGCTCCG 58.826 43.478 0.00 0.00 0.00 4.63
541 550 3.242123 CGAAGAGAAATACAAAGCTCCGC 60.242 47.826 0.00 0.00 0.00 5.54
542 551 3.618690 AGAGAAATACAAAGCTCCGCT 57.381 42.857 0.00 0.00 42.56 5.52
553 562 1.739067 AGCTCCGCTTAAAAATCGCT 58.261 45.000 0.00 0.00 33.89 4.93
554 563 2.901249 AGCTCCGCTTAAAAATCGCTA 58.099 42.857 0.00 0.00 33.89 4.26
555 564 2.608090 AGCTCCGCTTAAAAATCGCTAC 59.392 45.455 0.00 0.00 33.89 3.58
556 565 2.596807 GCTCCGCTTAAAAATCGCTACG 60.597 50.000 0.00 0.00 0.00 3.51
557 566 2.601763 CTCCGCTTAAAAATCGCTACGT 59.398 45.455 0.00 0.00 0.00 3.57
558 567 2.995258 TCCGCTTAAAAATCGCTACGTT 59.005 40.909 0.00 0.00 0.00 3.99
559 568 3.088552 CCGCTTAAAAATCGCTACGTTG 58.911 45.455 0.00 0.00 0.00 4.10
560 569 2.520754 CGCTTAAAAATCGCTACGTTGC 59.479 45.455 12.16 12.16 0.00 4.17
561 570 3.484683 GCTTAAAAATCGCTACGTTGCA 58.515 40.909 21.37 9.33 0.00 4.08
562 571 3.297202 GCTTAAAAATCGCTACGTTGCAC 59.703 43.478 21.37 0.00 0.00 4.57
563 572 4.459606 CTTAAAAATCGCTACGTTGCACA 58.540 39.130 21.37 7.86 0.00 4.57
564 573 2.594529 AAAATCGCTACGTTGCACAG 57.405 45.000 21.37 5.95 0.00 3.66
565 574 1.508632 AAATCGCTACGTTGCACAGT 58.491 45.000 21.37 4.06 0.00 3.55
566 575 2.357327 AATCGCTACGTTGCACAGTA 57.643 45.000 21.37 2.11 0.00 2.74
567 576 2.357327 ATCGCTACGTTGCACAGTAA 57.643 45.000 21.37 0.45 0.00 2.24
568 577 2.357327 TCGCTACGTTGCACAGTAAT 57.643 45.000 21.37 0.00 0.00 1.89
569 578 3.490800 TCGCTACGTTGCACAGTAATA 57.509 42.857 21.37 0.00 0.00 0.98
570 579 3.835779 TCGCTACGTTGCACAGTAATAA 58.164 40.909 21.37 0.00 0.00 1.40
571 580 4.426416 TCGCTACGTTGCACAGTAATAAT 58.574 39.130 21.37 0.00 0.00 1.28
572 581 5.580661 TCGCTACGTTGCACAGTAATAATA 58.419 37.500 21.37 0.00 0.00 0.98
573 582 6.210796 TCGCTACGTTGCACAGTAATAATAT 58.789 36.000 21.37 0.00 0.00 1.28
574 583 6.143278 TCGCTACGTTGCACAGTAATAATATG 59.857 38.462 21.37 0.63 0.00 1.78
575 584 6.590357 GCTACGTTGCACAGTAATAATATGG 58.410 40.000 17.16 0.00 0.00 2.74
576 585 6.422701 GCTACGTTGCACAGTAATAATATGGA 59.577 38.462 17.16 0.00 0.00 3.41
577 586 7.117812 GCTACGTTGCACAGTAATAATATGGAT 59.882 37.037 17.16 0.00 0.00 3.41
578 587 7.801716 ACGTTGCACAGTAATAATATGGATT 57.198 32.000 0.00 0.00 0.00 3.01
579 588 8.220755 ACGTTGCACAGTAATAATATGGATTT 57.779 30.769 0.00 0.00 0.00 2.17
580 589 8.128582 ACGTTGCACAGTAATAATATGGATTTG 58.871 33.333 0.00 0.00 0.00 2.32
581 590 8.341903 CGTTGCACAGTAATAATATGGATTTGA 58.658 33.333 0.00 0.00 0.00 2.69
582 591 9.669353 GTTGCACAGTAATAATATGGATTTGAG 57.331 33.333 0.00 0.00 0.00 3.02
583 592 8.394971 TGCACAGTAATAATATGGATTTGAGG 57.605 34.615 0.00 0.00 0.00 3.86
584 593 7.998383 TGCACAGTAATAATATGGATTTGAGGT 59.002 33.333 0.00 0.00 0.00 3.85
585 594 8.850156 GCACAGTAATAATATGGATTTGAGGTT 58.150 33.333 0.00 0.00 0.00 3.50
603 612 9.685828 TTTGAGGTTTCTATTTTAAATTGTCCG 57.314 29.630 0.00 0.00 0.00 4.79
604 613 7.822658 TGAGGTTTCTATTTTAAATTGTCCGG 58.177 34.615 0.00 0.00 0.00 5.14
605 614 7.666388 TGAGGTTTCTATTTTAAATTGTCCGGA 59.334 33.333 0.00 0.00 0.00 5.14
606 615 8.589701 AGGTTTCTATTTTAAATTGTCCGGAT 57.410 30.769 7.81 0.00 0.00 4.18
607 616 8.466798 AGGTTTCTATTTTAAATTGTCCGGATG 58.533 33.333 7.81 0.00 0.00 3.51
608 617 8.248253 GGTTTCTATTTTAAATTGTCCGGATGT 58.752 33.333 7.81 0.00 0.00 3.06
609 618 9.072294 GTTTCTATTTTAAATTGTCCGGATGTG 57.928 33.333 7.81 0.00 0.00 3.21
610 619 7.328277 TCTATTTTAAATTGTCCGGATGTGG 57.672 36.000 7.81 0.00 0.00 4.17
611 620 7.113437 TCTATTTTAAATTGTCCGGATGTGGA 58.887 34.615 7.81 0.00 35.04 4.02
612 621 6.597832 ATTTTAAATTGTCCGGATGTGGAA 57.402 33.333 7.81 0.00 40.44 3.53
613 622 6.597832 TTTTAAATTGTCCGGATGTGGAAT 57.402 33.333 7.81 0.00 40.44 3.01
614 623 5.574891 TTAAATTGTCCGGATGTGGAATG 57.425 39.130 7.81 0.00 40.44 2.67
615 624 1.392589 ATTGTCCGGATGTGGAATGC 58.607 50.000 7.81 0.00 40.44 3.56
616 625 0.037447 TTGTCCGGATGTGGAATGCA 59.963 50.000 7.81 0.00 40.44 3.96
617 626 0.255604 TGTCCGGATGTGGAATGCAT 59.744 50.000 7.81 0.00 40.44 3.96
618 627 1.340893 TGTCCGGATGTGGAATGCATT 60.341 47.619 12.83 12.83 40.44 3.56
619 628 1.066002 GTCCGGATGTGGAATGCATTG 59.934 52.381 18.59 0.00 40.44 2.82
620 629 1.105457 CCGGATGTGGAATGCATTGT 58.895 50.000 18.59 0.00 0.00 2.71
621 630 1.477700 CCGGATGTGGAATGCATTGTT 59.522 47.619 18.59 0.00 0.00 2.83
622 631 2.094078 CCGGATGTGGAATGCATTGTTT 60.094 45.455 18.59 0.00 0.00 2.83
623 632 2.924926 CGGATGTGGAATGCATTGTTTG 59.075 45.455 18.59 0.00 0.00 2.93
624 633 3.367190 CGGATGTGGAATGCATTGTTTGA 60.367 43.478 18.59 0.00 0.00 2.69
625 634 3.928375 GGATGTGGAATGCATTGTTTGAC 59.072 43.478 18.59 6.33 0.00 3.18
626 635 4.322198 GGATGTGGAATGCATTGTTTGACT 60.322 41.667 18.59 0.00 0.00 3.41
627 636 4.241590 TGTGGAATGCATTGTTTGACTC 57.758 40.909 18.59 0.00 0.00 3.36
628 637 3.236816 GTGGAATGCATTGTTTGACTCG 58.763 45.455 18.59 0.00 0.00 4.18
629 638 2.884012 TGGAATGCATTGTTTGACTCGT 59.116 40.909 18.59 0.00 0.00 4.18
630 639 3.058293 TGGAATGCATTGTTTGACTCGTC 60.058 43.478 18.59 0.00 0.00 4.20
631 640 3.189287 GGAATGCATTGTTTGACTCGTCT 59.811 43.478 18.59 0.00 0.00 4.18
632 641 3.818961 ATGCATTGTTTGACTCGTCTG 57.181 42.857 0.00 0.00 0.00 3.51
633 642 2.560504 TGCATTGTTTGACTCGTCTGT 58.439 42.857 0.00 0.00 0.00 3.41
634 643 2.287644 TGCATTGTTTGACTCGTCTGTG 59.712 45.455 0.00 0.00 0.00 3.66
635 644 2.349817 GCATTGTTTGACTCGTCTGTGG 60.350 50.000 0.00 0.00 0.00 4.17
636 645 1.948104 TTGTTTGACTCGTCTGTGGG 58.052 50.000 0.00 0.00 0.00 4.61
637 646 0.828022 TGTTTGACTCGTCTGTGGGT 59.172 50.000 0.00 0.00 0.00 4.51
638 647 1.217882 GTTTGACTCGTCTGTGGGTG 58.782 55.000 0.00 0.00 0.00 4.61
639 648 0.828022 TTTGACTCGTCTGTGGGTGT 59.172 50.000 0.00 0.00 0.00 4.16
640 649 0.828022 TTGACTCGTCTGTGGGTGTT 59.172 50.000 0.00 0.00 0.00 3.32
641 650 0.828022 TGACTCGTCTGTGGGTGTTT 59.172 50.000 0.00 0.00 0.00 2.83
642 651 1.217882 GACTCGTCTGTGGGTGTTTG 58.782 55.000 0.00 0.00 0.00 2.93
643 652 0.828022 ACTCGTCTGTGGGTGTTTGA 59.172 50.000 0.00 0.00 0.00 2.69
644 653 1.217882 CTCGTCTGTGGGTGTTTGAC 58.782 55.000 0.00 0.00 0.00 3.18
645 654 1.931551 CGTCTGTGGGTGTTTGACG 59.068 57.895 0.00 0.00 43.03 4.35
646 655 3.372795 GTCTGTGGGTGTTTGACGA 57.627 52.632 0.00 0.00 0.00 4.20
647 656 1.217882 GTCTGTGGGTGTTTGACGAG 58.782 55.000 0.00 0.00 0.00 4.18
648 657 0.531974 TCTGTGGGTGTTTGACGAGC 60.532 55.000 0.00 0.00 0.00 5.03
649 658 1.507141 CTGTGGGTGTTTGACGAGCC 61.507 60.000 0.00 0.00 0.00 4.70
650 659 1.525077 GTGGGTGTTTGACGAGCCA 60.525 57.895 0.00 0.00 37.40 4.75
651 660 1.098712 GTGGGTGTTTGACGAGCCAA 61.099 55.000 0.00 0.00 41.30 4.52
652 661 0.394488 TGGGTGTTTGACGAGCCAAA 60.394 50.000 0.00 0.00 36.80 3.28
653 662 0.958822 GGGTGTTTGACGAGCCAAAT 59.041 50.000 0.00 0.00 38.18 2.32
654 663 1.339929 GGGTGTTTGACGAGCCAAATT 59.660 47.619 0.00 0.00 38.18 1.82
655 664 2.223947 GGGTGTTTGACGAGCCAAATTT 60.224 45.455 0.00 0.00 38.18 1.82
656 665 2.794350 GGTGTTTGACGAGCCAAATTTG 59.206 45.455 11.40 11.40 38.18 2.32
657 666 2.218530 GTGTTTGACGAGCCAAATTTGC 59.781 45.455 12.92 8.39 38.18 3.68
658 667 2.159184 TGTTTGACGAGCCAAATTTGCA 60.159 40.909 12.92 1.38 38.18 4.08
659 668 2.863137 GTTTGACGAGCCAAATTTGCAA 59.137 40.909 12.92 7.50 38.18 4.08
660 669 2.879002 TGACGAGCCAAATTTGCAAA 57.121 40.000 15.44 15.44 0.00 3.68
661 670 2.741612 TGACGAGCCAAATTTGCAAAG 58.258 42.857 18.19 4.91 0.00 2.77
662 671 2.100584 TGACGAGCCAAATTTGCAAAGT 59.899 40.909 18.19 12.65 0.00 2.66
663 672 2.726241 GACGAGCCAAATTTGCAAAGTC 59.274 45.455 18.19 12.26 0.00 3.01
664 673 2.061028 CGAGCCAAATTTGCAAAGTCC 58.939 47.619 18.19 7.31 0.00 3.85
665 674 2.288395 CGAGCCAAATTTGCAAAGTCCT 60.288 45.455 18.19 11.77 0.00 3.85
666 675 3.732212 GAGCCAAATTTGCAAAGTCCTT 58.268 40.909 18.19 3.93 0.00 3.36
667 676 4.558496 CGAGCCAAATTTGCAAAGTCCTTA 60.558 41.667 18.19 0.00 0.00 2.69
668 677 5.482006 GAGCCAAATTTGCAAAGTCCTTAT 58.518 37.500 18.19 1.32 0.00 1.73
669 678 5.482006 AGCCAAATTTGCAAAGTCCTTATC 58.518 37.500 18.19 2.72 0.00 1.75
670 679 5.011943 AGCCAAATTTGCAAAGTCCTTATCA 59.988 36.000 18.19 0.00 0.00 2.15
671 680 5.349543 GCCAAATTTGCAAAGTCCTTATCAG 59.650 40.000 18.19 0.40 0.00 2.90
672 681 5.870978 CCAAATTTGCAAAGTCCTTATCAGG 59.129 40.000 18.19 4.43 42.50 3.86
754 766 3.618750 GTCAACGGACACGGGGGA 61.619 66.667 0.00 0.00 46.48 4.81
755 767 2.605295 TCAACGGACACGGGGGAT 60.605 61.111 0.00 0.00 46.48 3.85
756 768 2.218454 TCAACGGACACGGGGGATT 61.218 57.895 0.00 0.00 46.48 3.01
757 769 1.302993 CAACGGACACGGGGGATTT 60.303 57.895 0.00 0.00 46.48 2.17
758 770 0.891904 CAACGGACACGGGGGATTTT 60.892 55.000 0.00 0.00 46.48 1.82
759 771 0.178984 AACGGACACGGGGGATTTTT 60.179 50.000 0.00 0.00 46.48 1.94
827 848 4.392445 CGAAATCGGGTAAACCATTACACA 59.608 41.667 0.81 0.00 44.20 3.72
828 849 5.106634 CGAAATCGGGTAAACCATTACACAA 60.107 40.000 0.81 0.00 44.20 3.33
885 906 3.717294 CTCCACCACCTTCCCCCG 61.717 72.222 0.00 0.00 0.00 5.73
908 939 3.145551 CTACCCCGACCCACCTCG 61.146 72.222 0.00 0.00 0.00 4.63
909 940 3.951769 CTACCCCGACCCACCTCGT 62.952 68.421 0.00 0.00 31.35 4.18
910 941 3.944250 TACCCCGACCCACCTCGTC 62.944 68.421 0.00 0.00 31.35 4.20
912 943 3.450115 CCCGACCCACCTCGTCTC 61.450 72.222 0.00 0.00 31.35 3.36
913 944 3.812019 CCGACCCACCTCGTCTCG 61.812 72.222 0.00 0.00 31.35 4.04
914 945 4.477975 CGACCCACCTCGTCTCGC 62.478 72.222 0.00 0.00 0.00 5.03
915 946 4.131088 GACCCACCTCGTCTCGCC 62.131 72.222 0.00 0.00 0.00 5.54
916 947 4.680537 ACCCACCTCGTCTCGCCT 62.681 66.667 0.00 0.00 0.00 5.52
917 948 3.827898 CCCACCTCGTCTCGCCTC 61.828 72.222 0.00 0.00 0.00 4.70
1448 1492 2.043450 CTCCTCTCCCCGCTCACT 60.043 66.667 0.00 0.00 0.00 3.41
1883 1927 1.808133 GCCATAGAGAAGGAAGGCGTG 60.808 57.143 0.00 0.00 31.88 5.34
1958 2002 0.309922 GGCTCAATGACATGCCATCG 59.690 55.000 9.77 0.00 44.34 3.84
2105 2149 1.739562 GCTTGGACTCTCTGCACCG 60.740 63.158 0.00 0.00 0.00 4.94
2152 2197 2.297315 TCAGAGACACTCATTCTTGCGT 59.703 45.455 0.00 0.00 32.06 5.24
2174 2219 7.172532 TGCGTAACACATTTGAATCTCTAACTT 59.827 33.333 0.00 0.00 0.00 2.66
2214 2259 6.539826 CCAAGATATAAGTCAATGCTCACACA 59.460 38.462 0.00 0.00 0.00 3.72
2215 2260 7.254692 CCAAGATATAAGTCAATGCTCACACAG 60.255 40.741 0.00 0.00 0.00 3.66
2216 2261 6.882656 AGATATAAGTCAATGCTCACACAGT 58.117 36.000 0.00 0.00 0.00 3.55
2218 2263 2.916702 AGTCAATGCTCACACAGTCA 57.083 45.000 0.00 0.00 0.00 3.41
2219 2264 2.487934 AGTCAATGCTCACACAGTCAC 58.512 47.619 0.00 0.00 0.00 3.67
2220 2265 2.158914 AGTCAATGCTCACACAGTCACA 60.159 45.455 0.00 0.00 0.00 3.58
2221 2266 2.032549 GTCAATGCTCACACAGTCACAC 60.033 50.000 0.00 0.00 0.00 3.82
2231 2283 5.670485 TCACACAGTCACACTTATGAGTTT 58.330 37.500 0.00 0.00 32.54 2.66
2319 2371 7.853299 TGGTAATGTTGACCATTTAGCTAGTA 58.147 34.615 0.00 0.00 41.01 1.82
2394 2454 1.697432 TCTTTGACGGTCAGGAATGGT 59.303 47.619 11.14 0.00 0.00 3.55
2395 2455 1.806542 CTTTGACGGTCAGGAATGGTG 59.193 52.381 11.14 0.00 0.00 4.17
2396 2456 0.605319 TTGACGGTCAGGAATGGTGC 60.605 55.000 11.14 0.00 0.00 5.01
2407 2468 3.686726 CAGGAATGGTGCTGAGTAGAAAC 59.313 47.826 0.00 0.00 45.65 2.78
2419 2480 4.185394 TGAGTAGAAACGTTGCTTGTTCA 58.815 39.130 15.51 12.72 0.00 3.18
2420 2481 4.033587 TGAGTAGAAACGTTGCTTGTTCAC 59.966 41.667 15.51 6.04 0.00 3.18
2433 2494 5.302360 TGCTTGTTCACGTATTTAGGTTCT 58.698 37.500 0.00 0.00 0.00 3.01
2445 2506 9.455847 ACGTATTTAGGTTCTTACGACATAATC 57.544 33.333 8.16 0.00 39.71 1.75
2486 2547 7.865706 ATTTAATGAAGTTAGTGCTAGGGTG 57.134 36.000 0.00 0.00 0.00 4.61
2488 2549 7.484993 TTAATGAAGTTAGTGCTAGGGTGTA 57.515 36.000 0.00 0.00 0.00 2.90
2552 2614 3.996825 GCAGTAGGCGACAAAATGG 57.003 52.632 0.00 0.00 0.00 3.16
2641 2709 1.910722 CCCAGTGCATGTAGCTCCT 59.089 57.895 0.00 0.00 45.94 3.69
2643 2711 1.094073 CCAGTGCATGTAGCTCCTGC 61.094 60.000 7.85 7.85 45.94 4.85
2656 2724 3.818787 CCTGCTTGCGCATGGTCC 61.819 66.667 22.96 8.63 46.74 4.46
2657 2725 3.057548 CTGCTTGCGCATGGTCCA 61.058 61.111 22.96 12.42 46.74 4.02
2658 2726 3.047718 CTGCTTGCGCATGGTCCAG 62.048 63.158 22.96 17.24 46.74 3.86
2659 2727 3.818787 GCTTGCGCATGGTCCAGG 61.819 66.667 22.96 0.00 35.78 4.45
2660 2728 3.136123 CTTGCGCATGGTCCAGGG 61.136 66.667 12.75 3.62 0.00 4.45
2661 2729 3.626996 CTTGCGCATGGTCCAGGGA 62.627 63.158 12.75 0.00 0.00 4.20
2662 2730 3.203086 TTGCGCATGGTCCAGGGAA 62.203 57.895 12.75 0.00 0.00 3.97
2663 2731 2.825836 GCGCATGGTCCAGGGAAG 60.826 66.667 0.30 0.00 0.00 3.46
2664 2732 2.124570 CGCATGGTCCAGGGAAGG 60.125 66.667 5.53 0.00 0.00 3.46
2665 2733 2.669133 CGCATGGTCCAGGGAAGGA 61.669 63.158 5.53 0.00 34.64 3.36
2666 2734 1.925888 GCATGGTCCAGGGAAGGAT 59.074 57.895 5.53 0.00 40.42 3.24
2667 2735 0.259938 GCATGGTCCAGGGAAGGATT 59.740 55.000 5.53 0.00 40.42 3.01
2740 2815 2.672961 TATGCTTCTCTGTTGTCCCG 57.327 50.000 0.00 0.00 0.00 5.14
2746 2821 1.004918 CTCTGTTGTCCCGGTGTCC 60.005 63.158 0.00 0.00 0.00 4.02
2754 2829 1.273154 TGTCCCGGTGTCCCACTAATA 60.273 52.381 0.00 0.00 34.40 0.98
2794 2869 1.545706 AACCCGAGGTCCTCTTGAGC 61.546 60.000 17.00 0.00 41.93 4.26
2807 2882 3.617263 CCTCTTGAGCCGTATGTGTAAAC 59.383 47.826 0.00 0.00 0.00 2.01
2835 2910 0.376152 GCGACATTGATGCTGACAGG 59.624 55.000 4.26 0.00 0.00 4.00
2858 2933 4.695455 GCTGACACCAGATGCTTAGTTTTA 59.305 41.667 0.00 0.00 43.02 1.52
2883 2958 5.046878 TGGTAGTGACAACAACGATAGGATT 60.047 40.000 0.00 0.00 43.77 3.01
2886 2961 3.374058 GTGACAACAACGATAGGATTGGG 59.626 47.826 0.00 0.00 43.77 4.12
2905 2980 7.068716 GGATTGGGTCAGTTTATTTGAGCTATT 59.931 37.037 4.70 0.00 41.51 1.73
2974 3132 9.716531 TTTTTATGTTTCCATTAATGATGTGCA 57.283 25.926 17.23 9.06 33.71 4.57
2975 3133 8.700722 TTTATGTTTCCATTAATGATGTGCAC 57.299 30.769 17.23 10.75 33.71 4.57
2976 3134 5.718724 TGTTTCCATTAATGATGTGCACA 57.281 34.783 24.08 24.08 33.71 4.57
2988 3176 4.862350 TGATGTGCACAAATTCAGTTCAG 58.138 39.130 25.72 0.00 0.00 3.02
3011 3199 4.154375 GCATATCTGTCATCCTGAATGCTG 59.846 45.833 0.00 0.00 35.38 4.41
3076 3264 3.375782 AAATCTGCTGCTGGTTCAAAC 57.624 42.857 5.47 0.00 0.00 2.93
3100 3288 1.708993 TTGGTGGTGAGGCAGAAGCT 61.709 55.000 0.00 0.00 41.70 3.74
3169 3357 6.401153 CGAACAAAGCTGTCAAAGATAGTACC 60.401 42.308 0.00 0.00 33.45 3.34
3383 3571 9.638239 GGTCTTATTTCTTTTGTGCATAATTGA 57.362 29.630 0.00 0.00 0.00 2.57
3392 3580 8.196771 TCTTTTGTGCATAATTGACAACTTTCT 58.803 29.630 0.00 0.00 29.44 2.52
3393 3581 8.715191 TTTTGTGCATAATTGACAACTTTCTT 57.285 26.923 0.00 0.00 29.44 2.52
3394 3582 8.715191 TTTGTGCATAATTGACAACTTTCTTT 57.285 26.923 0.00 0.00 29.44 2.52
3395 3583 8.715191 TTGTGCATAATTGACAACTTTCTTTT 57.285 26.923 0.00 0.00 0.00 2.27
3449 3641 3.625463 CCAAGGATGGTGATGGAACATCA 60.625 47.826 7.78 7.78 42.62 3.07
3572 3764 7.388437 ACTTACACTTGTGATATCCGGTAAAA 58.612 34.615 0.00 0.00 0.00 1.52
3574 3766 8.795842 TTACACTTGTGATATCCGGTAAAATT 57.204 30.769 0.00 0.00 0.00 1.82
3575 3767 7.083875 ACACTTGTGATATCCGGTAAAATTG 57.916 36.000 0.00 0.00 0.00 2.32
3576 3768 6.657541 ACACTTGTGATATCCGGTAAAATTGT 59.342 34.615 0.00 0.00 0.00 2.71
3577 3769 6.966632 CACTTGTGATATCCGGTAAAATTGTG 59.033 38.462 0.00 0.00 0.00 3.33
3579 3771 7.825270 ACTTGTGATATCCGGTAAAATTGTGTA 59.175 33.333 0.00 0.00 0.00 2.90
3585 3777 6.677781 ATCCGGTAAAATTGTGTATCTGTG 57.322 37.500 0.00 0.00 0.00 3.66
3587 3779 5.998981 TCCGGTAAAATTGTGTATCTGTGTT 59.001 36.000 0.00 0.00 0.00 3.32
3588 3780 6.072948 TCCGGTAAAATTGTGTATCTGTGTTG 60.073 38.462 0.00 0.00 0.00 3.33
3608 3803 8.920665 TGTGTTGAAAGTGAAGTTTGTTTTATG 58.079 29.630 0.00 0.00 0.00 1.90
3632 3827 9.896645 ATGAAGAGAACACAAATGATAGTACAT 57.103 29.630 0.00 0.00 0.00 2.29
3655 4030 9.331282 ACATTATTGTTAGCTTCCTTCTATGAC 57.669 33.333 0.00 0.00 29.55 3.06
3723 4098 3.372206 AGTCGCTTTAATCATCAGTGTGC 59.628 43.478 0.00 0.00 0.00 4.57
3724 4099 3.372206 GTCGCTTTAATCATCAGTGTGCT 59.628 43.478 0.00 0.00 0.00 4.40
3728 4103 5.258622 GCTTTAATCATCAGTGTGCTAACG 58.741 41.667 0.00 0.00 0.00 3.18
3736 4111 3.659786 TCAGTGTGCTAACGCTAAACAT 58.340 40.909 0.00 0.00 45.43 2.71
3741 4116 4.330074 GTGTGCTAACGCTAAACATCAGAT 59.670 41.667 0.00 0.00 36.97 2.90
3742 4117 4.935205 TGTGCTAACGCTAAACATCAGATT 59.065 37.500 0.00 0.00 36.97 2.40
3743 4118 6.035650 GTGTGCTAACGCTAAACATCAGATTA 59.964 38.462 0.00 0.00 36.97 1.75
3744 4119 6.255670 TGTGCTAACGCTAAACATCAGATTAG 59.744 38.462 0.00 0.00 36.97 1.73
3827 4206 3.670991 CGTCACAAAGAAGTACAGCTCTC 59.329 47.826 0.00 0.00 0.00 3.20
3841 4220 0.885196 GCTCTCCACAGAAGACGTCT 59.115 55.000 13.58 13.58 36.88 4.18
3853 4232 0.249911 AGACGTCTGAAGTTGCACCC 60.250 55.000 19.30 0.00 0.00 4.61
3895 4274 1.131126 CCTGCGTTTGCTTGAGTATGG 59.869 52.381 0.00 0.00 43.34 2.74
4027 4406 1.537202 CCAAGTAAGCTGTTCCTGCAC 59.463 52.381 0.00 0.00 0.00 4.57
4075 4454 4.820173 AGATCCGTTGTATCTGTCGACATA 59.180 41.667 20.40 12.98 32.44 2.29
4137 4517 3.744660 TGCTTCCTTCACTTTCTTCCTC 58.255 45.455 0.00 0.00 0.00 3.71
4228 4608 5.870978 AGCTTTTGATTGGTGCATTGATTAC 59.129 36.000 0.00 0.00 0.00 1.89
4469 4876 2.129607 CCAACAGTGACAAATGCAAGC 58.870 47.619 0.00 0.00 0.00 4.01
4490 4898 6.582929 AGCCTATATGATTAGGGGGAAATC 57.417 41.667 0.07 0.00 39.39 2.17
4517 4925 1.897802 CAAGCATTTGGAGGCCTCTTT 59.102 47.619 31.36 11.62 31.67 2.52
4520 4928 2.105766 GCATTTGGAGGCCTCTTTGAT 58.894 47.619 31.36 17.12 0.00 2.57
4526 4934 4.982241 TGGAGGCCTCTTTGATTATAGG 57.018 45.455 31.36 0.00 0.00 2.57
4530 4938 6.103205 TGGAGGCCTCTTTGATTATAGGATTT 59.897 38.462 31.36 0.00 0.00 2.17
4580 4988 5.852827 ACATTGGTTGTTTGATTTGTAGGG 58.147 37.500 0.00 0.00 33.74 3.53
4597 5005 7.888514 TTGTAGGGTTGGATCCTATATGATT 57.111 36.000 14.23 0.00 38.90 2.57
4599 5007 7.918076 TGTAGGGTTGGATCCTATATGATTTC 58.082 38.462 14.23 0.00 38.90 2.17
4661 5069 5.738909 TCTCTTTTTGGAGAGGCATTCTAG 58.261 41.667 2.41 0.00 42.73 2.43
4662 5070 4.848357 TCTTTTTGGAGAGGCATTCTAGG 58.152 43.478 0.00 0.00 35.87 3.02
4663 5071 3.652057 TTTTGGAGAGGCATTCTAGGG 57.348 47.619 0.00 0.00 35.87 3.53
4665 5073 0.326522 TGGAGAGGCATTCTAGGGCA 60.327 55.000 0.00 0.00 35.87 5.36
4666 5074 1.063183 GGAGAGGCATTCTAGGGCAT 58.937 55.000 0.00 0.00 35.87 4.40
4667 5075 1.003003 GGAGAGGCATTCTAGGGCATC 59.997 57.143 8.04 8.04 40.84 3.91
4668 5076 0.683973 AGAGGCATTCTAGGGCATCG 59.316 55.000 9.69 0.00 44.79 3.84
4669 5077 0.394565 GAGGCATTCTAGGGCATCGT 59.605 55.000 0.00 0.00 30.80 3.73
4670 5078 1.618837 GAGGCATTCTAGGGCATCGTA 59.381 52.381 0.00 0.00 30.80 3.43
4671 5079 2.234908 GAGGCATTCTAGGGCATCGTAT 59.765 50.000 0.00 0.00 30.80 3.06
4673 5081 4.033709 AGGCATTCTAGGGCATCGTATAT 58.966 43.478 0.00 0.00 0.00 0.86
4674 5082 4.100189 AGGCATTCTAGGGCATCGTATATC 59.900 45.833 0.00 0.00 0.00 1.63
4675 5083 4.100189 GGCATTCTAGGGCATCGTATATCT 59.900 45.833 0.00 0.00 0.00 1.98
4676 5084 5.046529 GCATTCTAGGGCATCGTATATCTG 58.953 45.833 0.00 0.00 0.00 2.90
4678 5086 6.462207 GCATTCTAGGGCATCGTATATCTGAT 60.462 42.308 0.00 0.00 0.00 2.90
4679 5087 7.255625 GCATTCTAGGGCATCGTATATCTGATA 60.256 40.741 0.00 0.00 0.00 2.15
4681 5089 8.768501 TTCTAGGGCATCGTATATCTGATATT 57.231 34.615 14.87 1.11 0.00 1.28
4684 5092 7.187824 AGGGCATCGTATATCTGATATTTGT 57.812 36.000 14.87 0.00 0.00 2.83
4685 5093 7.268586 AGGGCATCGTATATCTGATATTTGTC 58.731 38.462 14.87 9.53 0.00 3.18
4686 5094 7.041721 GGGCATCGTATATCTGATATTTGTCA 58.958 38.462 14.87 0.00 0.00 3.58
4687 5095 7.549134 GGGCATCGTATATCTGATATTTGTCAA 59.451 37.037 14.87 0.00 0.00 3.18
4688 5096 8.935844 GGCATCGTATATCTGATATTTGTCAAA 58.064 33.333 14.87 0.00 0.00 2.69
4699 5107 9.748708 TCTGATATTTGTCAAAAAGAAAAGGTG 57.251 29.630 1.31 0.00 0.00 4.00
4700 5108 9.533253 CTGATATTTGTCAAAAAGAAAAGGTGT 57.467 29.630 1.31 0.00 0.00 4.16
4701 5109 9.311916 TGATATTTGTCAAAAAGAAAAGGTGTG 57.688 29.630 1.31 0.00 0.00 3.82
4702 5110 5.854431 TTTGTCAAAAAGAAAAGGTGTGC 57.146 34.783 0.00 0.00 0.00 4.57
4719 5127 1.416030 GTGCATTTTTGGAACCTGGGT 59.584 47.619 0.00 0.00 0.00 4.51
4726 5134 0.474854 TTGGAACCTGGGTCTAGGCA 60.475 55.000 12.27 0.00 41.75 4.75
4730 5138 0.473886 AACCTGGGTCTAGGCACACT 60.474 55.000 0.00 0.00 41.75 3.55
4737 5145 3.055385 TGGGTCTAGGCACACTCATTTAC 60.055 47.826 0.00 0.00 0.00 2.01
4745 5153 3.987220 GGCACACTCATTTACGCAAAAAT 59.013 39.130 0.00 0.00 0.00 1.82
4748 5156 6.310224 GGCACACTCATTTACGCAAAAATAAT 59.690 34.615 0.00 0.00 0.00 1.28
4749 5157 7.486551 GGCACACTCATTTACGCAAAAATAATA 59.513 33.333 0.00 0.00 0.00 0.98
4750 5158 8.855279 GCACACTCATTTACGCAAAAATAATAA 58.145 29.630 0.00 0.00 0.00 1.40
4791 5199 6.641176 AAAAATGTGAAACTTTGTCGGAAC 57.359 33.333 0.00 0.00 38.04 3.62
4792 5200 4.974368 AATGTGAAACTTTGTCGGAACA 57.026 36.364 0.00 0.00 38.04 3.18
4793 5201 4.974368 ATGTGAAACTTTGTCGGAACAA 57.026 36.364 0.00 0.00 39.59 2.83
4794 5202 4.349663 TGTGAAACTTTGTCGGAACAAG 57.650 40.909 0.00 0.00 39.90 3.16
4795 5203 3.105937 GTGAAACTTTGTCGGAACAAGC 58.894 45.455 0.00 0.00 45.72 4.01
4796 5204 2.750166 TGAAACTTTGTCGGAACAAGCA 59.250 40.909 0.00 0.00 45.72 3.91
4797 5205 3.380004 TGAAACTTTGTCGGAACAAGCAT 59.620 39.130 0.00 0.00 45.72 3.79
4798 5206 4.142271 TGAAACTTTGTCGGAACAAGCATT 60.142 37.500 0.00 0.00 45.72 3.56
4817 5225 9.944663 CAAGCATTGTTAGTGTTTTTAGAGTAA 57.055 29.630 0.00 0.00 42.34 2.24
4820 5228 9.946165 GCATTGTTAGTGTTTTTAGAGTAAAGT 57.054 29.630 0.00 0.00 0.00 2.66
4822 5230 9.946165 ATTGTTAGTGTTTTTAGAGTAAAGTGC 57.054 29.630 0.00 0.00 0.00 4.40
4823 5231 8.495361 TGTTAGTGTTTTTAGAGTAAAGTGCA 57.505 30.769 0.00 0.00 0.00 4.57
4824 5232 9.116067 TGTTAGTGTTTTTAGAGTAAAGTGCAT 57.884 29.630 0.00 0.00 0.00 3.96
4825 5233 9.595357 GTTAGTGTTTTTAGAGTAAAGTGCATC 57.405 33.333 0.00 0.00 0.00 3.91
4826 5234 7.801716 AGTGTTTTTAGAGTAAAGTGCATCA 57.198 32.000 0.00 0.00 0.00 3.07
4827 5235 8.396272 AGTGTTTTTAGAGTAAAGTGCATCAT 57.604 30.769 0.00 0.00 0.00 2.45
4828 5236 9.502091 AGTGTTTTTAGAGTAAAGTGCATCATA 57.498 29.630 0.00 0.00 0.00 2.15
4833 5241 8.718102 TTTAGAGTAAAGTGCATCATAAGTCC 57.282 34.615 0.00 0.00 0.00 3.85
4834 5242 6.552445 AGAGTAAAGTGCATCATAAGTCCT 57.448 37.500 0.00 0.00 0.00 3.85
4835 5243 7.661536 AGAGTAAAGTGCATCATAAGTCCTA 57.338 36.000 0.00 0.00 0.00 2.94
4836 5244 8.079211 AGAGTAAAGTGCATCATAAGTCCTAA 57.921 34.615 0.00 0.00 0.00 2.69
4837 5245 8.540388 AGAGTAAAGTGCATCATAAGTCCTAAA 58.460 33.333 0.00 0.00 0.00 1.85
4838 5246 8.723942 AGTAAAGTGCATCATAAGTCCTAAAG 57.276 34.615 0.00 0.00 0.00 1.85
4839 5247 6.442513 AAAGTGCATCATAAGTCCTAAAGC 57.557 37.500 0.00 0.00 0.00 3.51
4840 5248 5.365021 AGTGCATCATAAGTCCTAAAGCT 57.635 39.130 0.00 0.00 0.00 3.74
4841 5249 6.485830 AGTGCATCATAAGTCCTAAAGCTA 57.514 37.500 0.00 0.00 0.00 3.32
4842 5250 7.072263 AGTGCATCATAAGTCCTAAAGCTAT 57.928 36.000 0.00 0.00 0.00 2.97
4843 5251 7.512992 AGTGCATCATAAGTCCTAAAGCTATT 58.487 34.615 0.00 0.00 0.00 1.73
4844 5252 7.443575 AGTGCATCATAAGTCCTAAAGCTATTG 59.556 37.037 0.00 0.00 0.00 1.90
4845 5253 6.712095 TGCATCATAAGTCCTAAAGCTATTGG 59.288 38.462 0.00 0.00 0.00 3.16
4846 5254 6.936900 GCATCATAAGTCCTAAAGCTATTGGA 59.063 38.462 0.00 0.00 0.00 3.53
4847 5255 7.118971 GCATCATAAGTCCTAAAGCTATTGGAG 59.881 40.741 2.25 0.00 0.00 3.86
4848 5256 7.067496 TCATAAGTCCTAAAGCTATTGGAGG 57.933 40.000 2.25 0.00 0.00 4.30
4849 5257 6.615726 TCATAAGTCCTAAAGCTATTGGAGGT 59.384 38.462 2.25 0.00 37.55 3.85
4850 5258 4.762289 AGTCCTAAAGCTATTGGAGGTG 57.238 45.455 2.25 0.00 35.56 4.00
4851 5259 4.104831 AGTCCTAAAGCTATTGGAGGTGT 58.895 43.478 2.25 0.00 35.56 4.16
4852 5260 4.080863 AGTCCTAAAGCTATTGGAGGTGTG 60.081 45.833 2.25 0.00 35.56 3.82
4853 5261 3.844211 TCCTAAAGCTATTGGAGGTGTGT 59.156 43.478 0.00 0.00 35.56 3.72
4854 5262 4.081087 TCCTAAAGCTATTGGAGGTGTGTC 60.081 45.833 0.00 0.00 35.56 3.67
4855 5263 3.788227 AAAGCTATTGGAGGTGTGTCA 57.212 42.857 0.00 0.00 35.56 3.58
4856 5264 3.788227 AAGCTATTGGAGGTGTGTCAA 57.212 42.857 0.00 0.00 35.56 3.18
4857 5265 4.307032 AAGCTATTGGAGGTGTGTCAAT 57.693 40.909 0.00 0.00 35.56 2.57
4858 5266 4.307032 AGCTATTGGAGGTGTGTCAATT 57.693 40.909 0.00 0.00 33.53 2.32
4859 5267 4.666512 AGCTATTGGAGGTGTGTCAATTT 58.333 39.130 0.00 0.00 33.53 1.82
4860 5268 5.815581 AGCTATTGGAGGTGTGTCAATTTA 58.184 37.500 0.00 0.00 33.53 1.40
4861 5269 5.882557 AGCTATTGGAGGTGTGTCAATTTAG 59.117 40.000 0.00 0.00 33.53 1.85
4862 5270 5.648092 GCTATTGGAGGTGTGTCAATTTAGT 59.352 40.000 0.00 0.00 33.72 2.24
4863 5271 6.183360 GCTATTGGAGGTGTGTCAATTTAGTC 60.183 42.308 0.00 0.00 33.72 2.59
4864 5272 4.015872 TGGAGGTGTGTCAATTTAGTCC 57.984 45.455 0.00 0.00 0.00 3.85
4865 5273 3.650942 TGGAGGTGTGTCAATTTAGTCCT 59.349 43.478 0.00 0.00 0.00 3.85
4866 5274 4.841813 TGGAGGTGTGTCAATTTAGTCCTA 59.158 41.667 0.00 0.00 0.00 2.94
4867 5275 5.487488 TGGAGGTGTGTCAATTTAGTCCTAT 59.513 40.000 0.00 0.00 0.00 2.57
4868 5276 6.670464 TGGAGGTGTGTCAATTTAGTCCTATA 59.330 38.462 0.00 0.00 0.00 1.31
4869 5277 7.181305 TGGAGGTGTGTCAATTTAGTCCTATAA 59.819 37.037 0.00 0.00 0.00 0.98
4870 5278 7.494952 GGAGGTGTGTCAATTTAGTCCTATAAC 59.505 40.741 0.00 0.00 0.00 1.89
4871 5279 8.147244 AGGTGTGTCAATTTAGTCCTATAACT 57.853 34.615 0.00 0.00 0.00 2.24
4872 5280 8.603304 AGGTGTGTCAATTTAGTCCTATAACTT 58.397 33.333 0.00 0.00 0.00 2.66
4873 5281 8.880750 GGTGTGTCAATTTAGTCCTATAACTTC 58.119 37.037 0.00 0.00 0.00 3.01
4874 5282 9.431887 GTGTGTCAATTTAGTCCTATAACTTCA 57.568 33.333 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 49 7.256763 CCCCCGGGTCTACTTTAATCATATAAA 60.257 40.741 21.85 0.00 0.00 1.40
47 51 5.722923 CCCCCGGGTCTACTTTAATCATATA 59.277 44.000 21.85 0.00 0.00 0.86
108 113 2.389962 TGTTTACCCACCGTATGCTC 57.610 50.000 0.00 0.00 0.00 4.26
152 157 7.575365 TGAATAACATCATAACTATGCGCTTG 58.425 34.615 9.73 0.58 33.76 4.01
181 186 8.695456 ACGTGATGCCTATATACATGATCATTA 58.305 33.333 5.16 2.98 0.00 1.90
250 256 4.900684 TGGATAACAGTCGATTGTTGGAA 58.099 39.130 29.90 15.14 41.18 3.53
266 272 9.737844 TTAATACAATAGATGCATGCTGGATAA 57.262 29.630 20.33 0.00 0.00 1.75
307 313 2.248280 TCTTGCTTAAGGCGTCACAA 57.752 45.000 4.29 0.00 45.43 3.33
308 314 2.076100 CATCTTGCTTAAGGCGTCACA 58.924 47.619 4.29 0.00 45.43 3.58
311 317 2.346803 TGTCATCTTGCTTAAGGCGTC 58.653 47.619 4.29 0.00 45.43 5.19
376 382 9.814899 TTGTATTGTTGCCATTAAGGATAAATG 57.185 29.630 0.00 0.00 41.22 2.32
438 447 3.435327 GTGATGTGTTCAATCTTGCGGTA 59.565 43.478 0.00 0.00 35.70 4.02
498 507 2.435372 TCTGTCTGTTTGGTTTGGCT 57.565 45.000 0.00 0.00 0.00 4.75
511 520 6.533367 GCTTTGTATTTCTCTTCGATCTGTCT 59.467 38.462 0.00 0.00 0.00 3.41
514 523 6.019156 GGAGCTTTGTATTTCTCTTCGATCTG 60.019 42.308 0.00 0.00 0.00 2.90
538 547 3.088552 CAACGTAGCGATTTTTAAGCGG 58.911 45.455 0.00 0.00 41.26 5.52
539 548 2.520754 GCAACGTAGCGATTTTTAAGCG 59.479 45.455 0.00 0.00 44.28 4.68
540 549 3.297202 GTGCAACGTAGCGATTTTTAAGC 59.703 43.478 0.00 0.00 37.31 3.09
541 550 4.459606 TGTGCAACGTAGCGATTTTTAAG 58.540 39.130 0.00 0.00 42.39 1.85
542 551 4.024725 ACTGTGCAACGTAGCGATTTTTAA 60.025 37.500 0.00 0.00 42.39 1.52
543 552 3.495377 ACTGTGCAACGTAGCGATTTTTA 59.505 39.130 0.00 0.00 42.39 1.52
544 553 2.289547 ACTGTGCAACGTAGCGATTTTT 59.710 40.909 0.00 0.00 42.39 1.94
545 554 1.871039 ACTGTGCAACGTAGCGATTTT 59.129 42.857 0.00 0.00 42.39 1.82
546 555 1.508632 ACTGTGCAACGTAGCGATTT 58.491 45.000 0.00 0.00 42.39 2.17
547 556 2.357327 TACTGTGCAACGTAGCGATT 57.643 45.000 0.00 0.00 42.39 3.34
548 557 2.357327 TTACTGTGCAACGTAGCGAT 57.643 45.000 0.00 0.00 42.39 4.58
549 558 2.357327 ATTACTGTGCAACGTAGCGA 57.643 45.000 0.00 0.00 42.39 4.93
550 559 4.772046 ATTATTACTGTGCAACGTAGCG 57.228 40.909 0.00 0.00 42.39 4.26
551 560 6.422701 TCCATATTATTACTGTGCAACGTAGC 59.577 38.462 0.00 0.00 42.39 3.58
552 561 7.940178 TCCATATTATTACTGTGCAACGTAG 57.060 36.000 0.00 0.00 42.39 3.51
553 562 8.896320 AATCCATATTATTACTGTGCAACGTA 57.104 30.769 0.00 0.00 42.39 3.57
554 563 7.801716 AATCCATATTATTACTGTGCAACGT 57.198 32.000 0.00 0.00 42.39 3.99
555 564 8.341903 TCAAATCCATATTATTACTGTGCAACG 58.658 33.333 0.00 0.00 42.39 4.10
556 565 9.669353 CTCAAATCCATATTATTACTGTGCAAC 57.331 33.333 0.00 0.00 37.35 4.17
557 566 8.849168 CCTCAAATCCATATTATTACTGTGCAA 58.151 33.333 0.00 0.00 0.00 4.08
558 567 7.998383 ACCTCAAATCCATATTATTACTGTGCA 59.002 33.333 0.00 0.00 0.00 4.57
559 568 8.396272 ACCTCAAATCCATATTATTACTGTGC 57.604 34.615 0.00 0.00 0.00 4.57
577 586 9.685828 CGGACAATTTAAAATAGAAACCTCAAA 57.314 29.630 0.00 0.00 0.00 2.69
578 587 8.301002 CCGGACAATTTAAAATAGAAACCTCAA 58.699 33.333 0.00 0.00 0.00 3.02
579 588 7.666388 TCCGGACAATTTAAAATAGAAACCTCA 59.334 33.333 0.00 0.00 0.00 3.86
580 589 8.047413 TCCGGACAATTTAAAATAGAAACCTC 57.953 34.615 0.00 0.00 0.00 3.85
581 590 8.466798 CATCCGGACAATTTAAAATAGAAACCT 58.533 33.333 6.12 0.00 0.00 3.50
582 591 8.248253 ACATCCGGACAATTTAAAATAGAAACC 58.752 33.333 6.12 0.00 0.00 3.27
583 592 9.072294 CACATCCGGACAATTTAAAATAGAAAC 57.928 33.333 6.12 0.00 0.00 2.78
584 593 8.247562 CCACATCCGGACAATTTAAAATAGAAA 58.752 33.333 6.12 0.00 0.00 2.52
585 594 7.612244 TCCACATCCGGACAATTTAAAATAGAA 59.388 33.333 6.12 0.00 0.00 2.10
586 595 7.113437 TCCACATCCGGACAATTTAAAATAGA 58.887 34.615 6.12 0.00 0.00 1.98
587 596 7.328277 TCCACATCCGGACAATTTAAAATAG 57.672 36.000 6.12 0.00 0.00 1.73
588 597 7.704578 TTCCACATCCGGACAATTTAAAATA 57.295 32.000 6.12 0.00 33.75 1.40
589 598 6.597832 TTCCACATCCGGACAATTTAAAAT 57.402 33.333 6.12 0.00 33.75 1.82
590 599 6.393990 CATTCCACATCCGGACAATTTAAAA 58.606 36.000 6.12 0.00 33.75 1.52
591 600 5.623368 GCATTCCACATCCGGACAATTTAAA 60.623 40.000 6.12 0.00 33.75 1.52
592 601 4.142271 GCATTCCACATCCGGACAATTTAA 60.142 41.667 6.12 0.00 33.75 1.52
593 602 3.380004 GCATTCCACATCCGGACAATTTA 59.620 43.478 6.12 0.00 33.75 1.40
594 603 2.166254 GCATTCCACATCCGGACAATTT 59.834 45.455 6.12 0.00 33.75 1.82
595 604 1.750778 GCATTCCACATCCGGACAATT 59.249 47.619 6.12 0.00 33.75 2.32
596 605 1.340893 TGCATTCCACATCCGGACAAT 60.341 47.619 6.12 0.00 33.75 2.71
597 606 0.037447 TGCATTCCACATCCGGACAA 59.963 50.000 6.12 0.00 33.75 3.18
598 607 0.255604 ATGCATTCCACATCCGGACA 59.744 50.000 6.12 0.00 33.75 4.02
599 608 1.066002 CAATGCATTCCACATCCGGAC 59.934 52.381 6.12 0.00 33.75 4.79
600 609 1.340893 ACAATGCATTCCACATCCGGA 60.341 47.619 6.61 6.61 0.00 5.14
601 610 1.105457 ACAATGCATTCCACATCCGG 58.895 50.000 9.53 0.00 0.00 5.14
602 611 2.924926 CAAACAATGCATTCCACATCCG 59.075 45.455 9.53 0.00 0.00 4.18
603 612 3.928375 GTCAAACAATGCATTCCACATCC 59.072 43.478 9.53 0.00 0.00 3.51
604 613 4.813027 AGTCAAACAATGCATTCCACATC 58.187 39.130 9.53 0.00 0.00 3.06
605 614 4.616604 CGAGTCAAACAATGCATTCCACAT 60.617 41.667 9.53 0.00 0.00 3.21
606 615 3.304592 CGAGTCAAACAATGCATTCCACA 60.305 43.478 9.53 0.00 0.00 4.17
607 616 3.236816 CGAGTCAAACAATGCATTCCAC 58.763 45.455 9.53 2.07 0.00 4.02
608 617 2.884012 ACGAGTCAAACAATGCATTCCA 59.116 40.909 9.53 0.00 0.00 3.53
609 618 3.189287 AGACGAGTCAAACAATGCATTCC 59.811 43.478 9.53 0.00 0.00 3.01
610 619 4.153986 CAGACGAGTCAAACAATGCATTC 58.846 43.478 9.53 0.00 0.00 2.67
611 620 3.565482 ACAGACGAGTCAAACAATGCATT 59.435 39.130 5.99 5.99 0.00 3.56
612 621 3.058708 CACAGACGAGTCAAACAATGCAT 60.059 43.478 5.99 0.00 0.00 3.96
613 622 2.287644 CACAGACGAGTCAAACAATGCA 59.712 45.455 5.99 0.00 0.00 3.96
614 623 2.349817 CCACAGACGAGTCAAACAATGC 60.350 50.000 5.99 0.00 0.00 3.56
615 624 2.224079 CCCACAGACGAGTCAAACAATG 59.776 50.000 5.99 0.00 0.00 2.82
616 625 2.158813 ACCCACAGACGAGTCAAACAAT 60.159 45.455 5.99 0.00 0.00 2.71
617 626 1.208535 ACCCACAGACGAGTCAAACAA 59.791 47.619 5.99 0.00 0.00 2.83
618 627 0.828022 ACCCACAGACGAGTCAAACA 59.172 50.000 5.99 0.00 0.00 2.83
619 628 1.217882 CACCCACAGACGAGTCAAAC 58.782 55.000 5.99 0.00 0.00 2.93
620 629 0.828022 ACACCCACAGACGAGTCAAA 59.172 50.000 5.99 0.00 0.00 2.69
621 630 0.828022 AACACCCACAGACGAGTCAA 59.172 50.000 5.99 0.00 0.00 3.18
622 631 0.828022 AAACACCCACAGACGAGTCA 59.172 50.000 5.99 0.00 0.00 3.41
623 632 1.202486 TCAAACACCCACAGACGAGTC 60.202 52.381 0.00 0.00 0.00 3.36
624 633 0.828022 TCAAACACCCACAGACGAGT 59.172 50.000 0.00 0.00 0.00 4.18
625 634 1.217882 GTCAAACACCCACAGACGAG 58.782 55.000 0.00 0.00 0.00 4.18
626 635 3.372795 GTCAAACACCCACAGACGA 57.627 52.632 0.00 0.00 0.00 4.20
627 636 1.931551 CGTCAAACACCCACAGACG 59.068 57.895 0.00 0.00 44.64 4.18
628 637 1.217882 CTCGTCAAACACCCACAGAC 58.782 55.000 0.00 0.00 0.00 3.51
629 638 0.531974 GCTCGTCAAACACCCACAGA 60.532 55.000 0.00 0.00 0.00 3.41
630 639 1.507141 GGCTCGTCAAACACCCACAG 61.507 60.000 0.00 0.00 0.00 3.66
631 640 1.525077 GGCTCGTCAAACACCCACA 60.525 57.895 0.00 0.00 0.00 4.17
632 641 1.098712 TTGGCTCGTCAAACACCCAC 61.099 55.000 0.00 0.00 0.00 4.61
633 642 0.394488 TTTGGCTCGTCAAACACCCA 60.394 50.000 0.00 0.00 32.39 4.51
634 643 0.958822 ATTTGGCTCGTCAAACACCC 59.041 50.000 0.00 0.00 39.13 4.61
635 644 2.793278 AATTTGGCTCGTCAAACACC 57.207 45.000 0.00 0.00 39.13 4.16
636 645 2.218530 GCAAATTTGGCTCGTCAAACAC 59.781 45.455 19.47 0.00 39.13 3.32
637 646 2.159184 TGCAAATTTGGCTCGTCAAACA 60.159 40.909 19.47 2.39 39.13 2.83
638 647 2.468831 TGCAAATTTGGCTCGTCAAAC 58.531 42.857 19.47 0.00 39.13 2.93
639 648 2.879002 TGCAAATTTGGCTCGTCAAA 57.121 40.000 19.47 0.00 40.37 2.69
640 649 2.879002 TTGCAAATTTGGCTCGTCAA 57.121 40.000 19.47 10.71 0.00 3.18
641 650 2.100584 ACTTTGCAAATTTGGCTCGTCA 59.899 40.909 19.47 5.18 0.00 4.35
642 651 2.726241 GACTTTGCAAATTTGGCTCGTC 59.274 45.455 19.47 9.96 0.00 4.20
643 652 2.545742 GGACTTTGCAAATTTGGCTCGT 60.546 45.455 19.47 4.16 0.00 4.18
644 653 2.061028 GGACTTTGCAAATTTGGCTCG 58.939 47.619 19.47 0.59 0.00 5.03
645 654 3.391506 AGGACTTTGCAAATTTGGCTC 57.608 42.857 19.47 3.99 0.00 4.70
646 655 3.843893 AAGGACTTTGCAAATTTGGCT 57.156 38.095 19.47 0.00 0.00 4.75
647 656 5.237048 TGATAAGGACTTTGCAAATTTGGC 58.763 37.500 19.47 12.02 0.00 4.52
648 657 5.870978 CCTGATAAGGACTTTGCAAATTTGG 59.129 40.000 19.47 3.33 0.00 3.28
649 658 6.690530 TCCTGATAAGGACTTTGCAAATTTG 58.309 36.000 13.23 14.03 32.09 2.32
650 659 6.916360 TCCTGATAAGGACTTTGCAAATTT 57.084 33.333 13.23 2.44 32.09 1.82
651 660 6.916360 TTCCTGATAAGGACTTTGCAAATT 57.084 33.333 13.23 7.10 37.76 1.82
652 661 6.916360 TTTCCTGATAAGGACTTTGCAAAT 57.084 33.333 13.23 3.03 37.76 2.32
653 662 6.723298 TTTTCCTGATAAGGACTTTGCAAA 57.277 33.333 12.14 12.14 37.76 3.68
654 663 6.723298 TTTTTCCTGATAAGGACTTTGCAA 57.277 33.333 0.00 0.00 37.76 4.08
707 716 4.223923 GGTTTTCCAGGAGATTCTCTCTGA 59.776 45.833 23.07 11.98 40.50 3.27
771 783 3.487202 CCCGTGTCCGTTGATGCG 61.487 66.667 0.00 0.00 0.00 4.73
772 784 3.124921 CCCCGTGTCCGTTGATGC 61.125 66.667 0.00 0.00 0.00 3.91
773 785 2.435938 CCCCCGTGTCCGTTGATG 60.436 66.667 0.00 0.00 0.00 3.07
774 786 2.522367 AACCCCCGTGTCCGTTGAT 61.522 57.895 0.00 0.00 0.00 2.57
775 787 3.162858 AACCCCCGTGTCCGTTGA 61.163 61.111 0.00 0.00 0.00 3.18
776 788 2.975799 CAACCCCCGTGTCCGTTG 60.976 66.667 0.00 0.00 0.00 4.10
777 789 4.259131 CCAACCCCCGTGTCCGTT 62.259 66.667 0.00 0.00 0.00 4.44
780 792 2.627839 TTTCACCAACCCCCGTGTCC 62.628 60.000 0.00 0.00 0.00 4.02
781 793 0.752376 TTTTCACCAACCCCCGTGTC 60.752 55.000 0.00 0.00 0.00 3.67
828 849 2.883026 TCGATCCCACCAACCATTTTT 58.117 42.857 0.00 0.00 0.00 1.94
908 939 1.939769 GAGGTGAGGTGAGGCGAGAC 61.940 65.000 0.00 0.00 0.00 3.36
909 940 1.679305 GAGGTGAGGTGAGGCGAGA 60.679 63.158 0.00 0.00 0.00 4.04
910 941 2.716017 GGAGGTGAGGTGAGGCGAG 61.716 68.421 0.00 0.00 0.00 5.03
911 942 2.680352 GGAGGTGAGGTGAGGCGA 60.680 66.667 0.00 0.00 0.00 5.54
912 943 3.775654 GGGAGGTGAGGTGAGGCG 61.776 72.222 0.00 0.00 0.00 5.52
913 944 2.284995 AGGGAGGTGAGGTGAGGC 60.285 66.667 0.00 0.00 0.00 4.70
914 945 1.687493 GGAGGGAGGTGAGGTGAGG 60.687 68.421 0.00 0.00 0.00 3.86
915 946 0.686112 GAGGAGGGAGGTGAGGTGAG 60.686 65.000 0.00 0.00 0.00 3.51
916 947 1.388531 GAGGAGGGAGGTGAGGTGA 59.611 63.158 0.00 0.00 0.00 4.02
917 948 1.687493 GGAGGAGGGAGGTGAGGTG 60.687 68.421 0.00 0.00 0.00 4.00
1883 1927 1.555533 CCCCAGAAGTACTTGACCTCC 59.444 57.143 14.14 0.00 0.00 4.30
1958 2002 1.416401 TCCCTGAATCCGCCATAGTTC 59.584 52.381 0.00 0.00 0.00 3.01
2174 2219 4.767578 ATCTTGGCTAGAAGCTGAATGA 57.232 40.909 2.10 0.00 41.99 2.57
2218 2263 7.254117 CGCGAGAATTATCAAACTCATAAGTGT 60.254 37.037 0.00 0.00 35.36 3.55
2219 2264 7.059817 CGCGAGAATTATCAAACTCATAAGTG 58.940 38.462 0.00 0.00 35.36 3.16
2220 2265 6.292381 GCGCGAGAATTATCAAACTCATAAGT 60.292 38.462 12.10 0.00 37.32 2.24
2221 2266 6.067669 GCGCGAGAATTATCAAACTCATAAG 58.932 40.000 12.10 0.00 0.00 1.73
2231 2283 3.871006 ACAATTCAGCGCGAGAATTATCA 59.129 39.130 29.95 8.72 42.17 2.15
2283 2335 5.276270 GTCAACATTACCAAGCATGCTATG 58.724 41.667 23.00 21.62 0.00 2.23
2319 2371 8.462016 GCCTGTGAATATCTTCTACAACAATTT 58.538 33.333 0.00 0.00 32.29 1.82
2330 2382 6.124088 ACAAAATCGCCTGTGAATATCTTC 57.876 37.500 0.00 0.00 0.00 2.87
2340 2400 4.281898 ACCTACTAACAAAATCGCCTGT 57.718 40.909 0.00 0.00 0.00 4.00
2341 2401 4.142687 CCAACCTACTAACAAAATCGCCTG 60.143 45.833 0.00 0.00 0.00 4.85
2394 2454 2.526304 AGCAACGTTTCTACTCAGCA 57.474 45.000 0.00 0.00 0.00 4.41
2395 2455 2.544267 ACAAGCAACGTTTCTACTCAGC 59.456 45.455 0.00 0.00 0.00 4.26
2396 2456 4.270084 TGAACAAGCAACGTTTCTACTCAG 59.730 41.667 0.00 0.00 0.00 3.35
2407 2468 4.084223 ACCTAAATACGTGAACAAGCAACG 60.084 41.667 0.00 0.00 0.00 4.10
2465 2526 6.438108 TGTACACCCTAGCACTAACTTCATTA 59.562 38.462 0.00 0.00 0.00 1.90
2486 2547 3.983344 CCAAACAAGAAGCAAGCATGTAC 59.017 43.478 0.00 0.00 0.00 2.90
2488 2549 2.431782 ACCAAACAAGAAGCAAGCATGT 59.568 40.909 0.00 0.00 0.00 3.21
2622 2690 1.821332 GGAGCTACATGCACTGGGC 60.821 63.158 0.00 0.00 45.94 5.36
2623 2691 0.463295 CAGGAGCTACATGCACTGGG 60.463 60.000 0.00 0.00 45.94 4.45
2643 2711 3.136123 CCCTGGACCATGCGCAAG 61.136 66.667 17.11 10.85 43.44 4.01
2644 2712 3.203086 TTCCCTGGACCATGCGCAA 62.203 57.895 17.11 0.00 0.00 4.85
2647 2715 1.987807 ATCCTTCCCTGGACCATGCG 61.988 60.000 0.00 0.00 39.17 4.73
2649 2717 1.475751 CGAATCCTTCCCTGGACCATG 60.476 57.143 0.00 0.00 39.17 3.66
2651 2719 0.252513 TCGAATCCTTCCCTGGACCA 60.253 55.000 0.00 0.00 39.17 4.02
2656 2724 1.679032 GGTTGGTCGAATCCTTCCCTG 60.679 57.143 0.00 0.00 0.00 4.45
2657 2725 0.618981 GGTTGGTCGAATCCTTCCCT 59.381 55.000 0.00 0.00 0.00 4.20
2658 2726 0.326927 TGGTTGGTCGAATCCTTCCC 59.673 55.000 0.00 0.00 0.00 3.97
2659 2727 1.271163 TGTGGTTGGTCGAATCCTTCC 60.271 52.381 0.00 0.00 0.00 3.46
2660 2728 2.178912 TGTGGTTGGTCGAATCCTTC 57.821 50.000 0.00 0.00 0.00 3.46
2661 2729 2.039746 TCATGTGGTTGGTCGAATCCTT 59.960 45.455 0.00 0.00 0.00 3.36
2662 2730 1.628340 TCATGTGGTTGGTCGAATCCT 59.372 47.619 0.00 0.00 0.00 3.24
2663 2731 2.107950 TCATGTGGTTGGTCGAATCC 57.892 50.000 0.00 0.00 0.00 3.01
2664 2732 4.497473 TTTTCATGTGGTTGGTCGAATC 57.503 40.909 0.00 0.00 0.00 2.52
2665 2733 4.927978 TTTTTCATGTGGTTGGTCGAAT 57.072 36.364 0.00 0.00 0.00 3.34
2689 2763 4.799564 ACAGAAGCAAAGACAAAACCAA 57.200 36.364 0.00 0.00 0.00 3.67
2746 2821 6.367969 GGCGTAATGTGTCCTTATATTAGTGG 59.632 42.308 0.00 0.00 0.00 4.00
2754 2829 6.461640 GGTTATAGGCGTAATGTGTCCTTAT 58.538 40.000 0.00 0.00 0.00 1.73
2764 2839 2.560105 GACCTCGGGTTATAGGCGTAAT 59.440 50.000 0.00 0.00 35.25 1.89
2794 2869 3.678072 CAGTCCACAGTTTACACATACGG 59.322 47.826 0.00 0.00 0.00 4.02
2807 2882 1.395954 CATCAATGTCGCAGTCCACAG 59.604 52.381 0.00 0.00 0.00 3.66
2835 2910 2.393271 ACTAAGCATCTGGTGTCAGC 57.607 50.000 0.00 0.00 40.69 4.26
2858 2933 4.464951 TCCTATCGTTGTTGTCACTACCAT 59.535 41.667 0.00 0.00 0.00 3.55
2883 2958 6.245408 ACAATAGCTCAAATAAACTGACCCA 58.755 36.000 0.00 0.00 0.00 4.51
2886 2961 7.377766 TGGACAATAGCTCAAATAAACTGAC 57.622 36.000 0.00 0.00 0.00 3.51
2905 2980 8.862325 ACAAACATTACAGAAAGATATGGACA 57.138 30.769 0.00 0.00 0.00 4.02
2970 3128 3.082698 TGCTGAACTGAATTTGTGCAC 57.917 42.857 10.75 10.75 0.00 4.57
2971 3129 5.416639 AGATATGCTGAACTGAATTTGTGCA 59.583 36.000 0.00 0.00 0.00 4.57
2972 3130 5.888105 AGATATGCTGAACTGAATTTGTGC 58.112 37.500 0.00 0.00 0.00 4.57
3011 3199 8.925700 AGTGAAATTTGAAGTTCAGAAAAACAC 58.074 29.630 5.56 12.48 42.72 3.32
3100 3288 4.262164 GCAAATTTCTTCAGCCTTTCCAGA 60.262 41.667 0.00 0.00 0.00 3.86
3383 3571 7.865706 TGCTCTAGAAGAAAAAGAAAGTTGT 57.134 32.000 0.00 0.00 0.00 3.32
3387 3575 8.571336 TGGAATTGCTCTAGAAGAAAAAGAAAG 58.429 33.333 0.00 0.00 0.00 2.62
3392 3580 7.121759 CCTGATGGAATTGCTCTAGAAGAAAAA 59.878 37.037 0.00 0.00 34.57 1.94
3393 3581 6.600822 CCTGATGGAATTGCTCTAGAAGAAAA 59.399 38.462 0.00 0.00 34.57 2.29
3394 3582 6.118170 CCTGATGGAATTGCTCTAGAAGAAA 58.882 40.000 0.00 0.00 34.57 2.52
3395 3583 5.397221 CCCTGATGGAATTGCTCTAGAAGAA 60.397 44.000 0.00 0.00 35.39 2.52
3449 3641 2.610438 ACCAATTTGTCCCAGCATCT 57.390 45.000 0.00 0.00 0.00 2.90
3572 3764 7.283127 ACTTCACTTTCAACACAGATACACAAT 59.717 33.333 0.00 0.00 0.00 2.71
3574 3766 6.112734 ACTTCACTTTCAACACAGATACACA 58.887 36.000 0.00 0.00 0.00 3.72
3575 3767 6.604735 ACTTCACTTTCAACACAGATACAC 57.395 37.500 0.00 0.00 0.00 2.90
3576 3768 7.120579 ACAAACTTCACTTTCAACACAGATACA 59.879 33.333 0.00 0.00 0.00 2.29
3577 3769 7.472543 ACAAACTTCACTTTCAACACAGATAC 58.527 34.615 0.00 0.00 0.00 2.24
3579 3771 6.515272 ACAAACTTCACTTTCAACACAGAT 57.485 33.333 0.00 0.00 0.00 2.90
3587 3779 9.787532 CTCTTCATAAAACAAACTTCACTTTCA 57.212 29.630 0.00 0.00 0.00 2.69
3630 3825 8.778358 GGTCATAGAAGGAAGCTAACAATAATG 58.222 37.037 0.00 0.00 0.00 1.90
3632 3827 6.984474 CGGTCATAGAAGGAAGCTAACAATAA 59.016 38.462 0.00 0.00 0.00 1.40
3655 4030 3.119531 TGCAATATTTCTTTGACAGGCGG 60.120 43.478 0.00 0.00 0.00 6.13
3723 4098 7.863375 AGCTACTAATCTGATGTTTAGCGTTAG 59.137 37.037 14.22 4.20 31.84 2.34
3724 4099 7.713750 AGCTACTAATCTGATGTTTAGCGTTA 58.286 34.615 14.22 0.00 31.84 3.18
3728 4103 7.115663 GCAGTAGCTACTAATCTGATGTTTAGC 59.884 40.741 25.63 15.23 37.91 3.09
3736 4111 6.998673 TCATACTGCAGTAGCTACTAATCTGA 59.001 38.462 29.05 20.29 42.74 3.27
3741 4116 8.082852 GCTAAATCATACTGCAGTAGCTACTAA 58.917 37.037 29.05 15.77 42.74 2.24
3742 4117 7.448777 AGCTAAATCATACTGCAGTAGCTACTA 59.551 37.037 28.12 17.23 40.65 1.82
3743 4118 6.266558 AGCTAAATCATACTGCAGTAGCTACT 59.733 38.462 28.12 20.95 40.65 2.57
3744 4119 6.364706 CAGCTAAATCATACTGCAGTAGCTAC 59.635 42.308 28.50 16.43 40.52 3.58
3841 4220 2.904866 GTGGCGGGTGCAACTTCA 60.905 61.111 0.00 0.00 42.13 3.02
3895 4274 2.163815 TCTCTGCTTGGCTAACTACGTC 59.836 50.000 0.00 0.00 0.00 4.34
4027 4406 4.009675 TCCGAGATCAAATTGGTCCAAAG 58.990 43.478 8.75 2.11 0.00 2.77
4058 4437 9.901724 CTTACAAAATATGTCGACAGATACAAC 57.098 33.333 24.74 0.00 42.70 3.32
4075 4454 8.561738 ACGATACCATTCAAGTCTTACAAAAT 57.438 30.769 0.00 0.00 0.00 1.82
4137 4517 7.946655 TTCACTCCTATTATATTCAACTGCG 57.053 36.000 0.00 0.00 0.00 5.18
4239 4619 3.996363 GCACATCCCAAAGTCCAAAATTC 59.004 43.478 0.00 0.00 0.00 2.17
4291 4677 1.728971 CATCCAGCTGACGAACACTTC 59.271 52.381 17.39 0.00 0.00 3.01
4397 4804 4.380444 GGAGCGCAATTACCATCTCAAAAA 60.380 41.667 11.47 0.00 0.00 1.94
4398 4805 3.128589 GGAGCGCAATTACCATCTCAAAA 59.871 43.478 11.47 0.00 0.00 2.44
4399 4806 2.682856 GGAGCGCAATTACCATCTCAAA 59.317 45.455 11.47 0.00 0.00 2.69
4400 4807 2.092968 AGGAGCGCAATTACCATCTCAA 60.093 45.455 11.47 0.00 0.00 3.02
4469 4876 6.159398 AGCAGATTTCCCCCTAATCATATAGG 59.841 42.308 0.00 0.00 41.86 2.57
4563 4971 5.523438 TCCAACCCTACAAATCAAACAAC 57.477 39.130 0.00 0.00 0.00 3.32
4580 4988 5.510430 GGGGGAAATCATATAGGATCCAAC 58.490 45.833 15.82 2.31 0.00 3.77
4636 5044 5.192176 AGAATGCCTCTCCAAAAAGAGATC 58.808 41.667 2.53 0.00 44.67 2.75
4648 5056 1.337635 CGATGCCCTAGAATGCCTCTC 60.338 57.143 0.00 0.00 35.41 3.20
4653 5061 5.046529 CAGATATACGATGCCCTAGAATGC 58.953 45.833 0.00 0.00 0.00 3.56
4661 5069 7.041721 TGACAAATATCAGATATACGATGCCC 58.958 38.462 3.17 0.00 0.00 5.36
4662 5070 8.479313 TTGACAAATATCAGATATACGATGCC 57.521 34.615 3.17 0.00 0.00 4.40
4673 5081 9.748708 CACCTTTTCTTTTTGACAAATATCAGA 57.251 29.630 0.50 0.00 0.00 3.27
4674 5082 9.533253 ACACCTTTTCTTTTTGACAAATATCAG 57.467 29.630 0.50 0.00 0.00 2.90
4675 5083 9.311916 CACACCTTTTCTTTTTGACAAATATCA 57.688 29.630 0.50 0.00 0.00 2.15
4676 5084 8.275632 GCACACCTTTTCTTTTTGACAAATATC 58.724 33.333 0.50 0.00 0.00 1.63
4678 5086 7.099764 TGCACACCTTTTCTTTTTGACAAATA 58.900 30.769 0.50 0.00 0.00 1.40
4679 5087 5.936956 TGCACACCTTTTCTTTTTGACAAAT 59.063 32.000 0.50 0.00 0.00 2.32
4681 5089 4.887748 TGCACACCTTTTCTTTTTGACAA 58.112 34.783 0.00 0.00 0.00 3.18
4684 5092 7.303998 CAAAAATGCACACCTTTTCTTTTTGA 58.696 30.769 17.80 0.00 41.27 2.69
4685 5093 6.527372 CCAAAAATGCACACCTTTTCTTTTTG 59.473 34.615 16.54 16.54 39.76 2.44
4686 5094 6.432472 TCCAAAAATGCACACCTTTTCTTTTT 59.568 30.769 0.00 0.00 0.00 1.94
4687 5095 5.942826 TCCAAAAATGCACACCTTTTCTTTT 59.057 32.000 0.00 0.00 0.00 2.27
4688 5096 5.495640 TCCAAAAATGCACACCTTTTCTTT 58.504 33.333 0.00 0.00 0.00 2.52
4689 5097 5.096443 TCCAAAAATGCACACCTTTTCTT 57.904 34.783 0.00 0.00 0.00 2.52
4690 5098 4.751767 TCCAAAAATGCACACCTTTTCT 57.248 36.364 0.00 0.00 0.00 2.52
4691 5099 4.035091 GGTTCCAAAAATGCACACCTTTTC 59.965 41.667 0.00 0.00 0.00 2.29
4692 5100 3.944650 GGTTCCAAAAATGCACACCTTTT 59.055 39.130 0.00 0.00 0.00 2.27
4693 5101 3.199727 AGGTTCCAAAAATGCACACCTTT 59.800 39.130 0.00 0.00 28.23 3.11
4694 5102 2.771372 AGGTTCCAAAAATGCACACCTT 59.229 40.909 0.00 0.00 28.23 3.50
4695 5103 2.102925 CAGGTTCCAAAAATGCACACCT 59.897 45.455 0.00 0.00 33.24 4.00
4696 5104 2.482864 CAGGTTCCAAAAATGCACACC 58.517 47.619 0.00 0.00 0.00 4.16
4697 5105 2.482864 CCAGGTTCCAAAAATGCACAC 58.517 47.619 0.00 0.00 0.00 3.82
4698 5106 1.415659 CCCAGGTTCCAAAAATGCACA 59.584 47.619 0.00 0.00 0.00 4.57
4699 5107 1.416030 ACCCAGGTTCCAAAAATGCAC 59.584 47.619 0.00 0.00 0.00 4.57
4700 5108 1.691434 GACCCAGGTTCCAAAAATGCA 59.309 47.619 0.00 0.00 0.00 3.96
4701 5109 1.970640 AGACCCAGGTTCCAAAAATGC 59.029 47.619 0.00 0.00 0.00 3.56
4702 5110 3.763897 CCTAGACCCAGGTTCCAAAAATG 59.236 47.826 0.00 0.00 0.00 2.32
4719 5127 2.232696 TGCGTAAATGAGTGTGCCTAGA 59.767 45.455 0.00 0.00 0.00 2.43
4771 5179 4.974368 TGTTCCGACAAAGTTTCACATT 57.026 36.364 0.00 0.00 31.49 2.71
4773 5181 3.426963 GCTTGTTCCGACAAAGTTTCACA 60.427 43.478 0.00 0.00 44.65 3.58
4780 5188 3.354089 ACAATGCTTGTTCCGACAAAG 57.646 42.857 0.00 0.00 44.65 2.77
4791 5199 9.944663 TTACTCTAAAAACACTAACAATGCTTG 57.055 29.630 0.00 0.00 0.00 4.01
4794 5202 9.946165 ACTTTACTCTAAAAACACTAACAATGC 57.054 29.630 0.00 0.00 0.00 3.56
4796 5204 9.946165 GCACTTTACTCTAAAAACACTAACAAT 57.054 29.630 0.00 0.00 0.00 2.71
4797 5205 8.948145 TGCACTTTACTCTAAAAACACTAACAA 58.052 29.630 0.00 0.00 0.00 2.83
4798 5206 8.495361 TGCACTTTACTCTAAAAACACTAACA 57.505 30.769 0.00 0.00 0.00 2.41
4799 5207 9.595357 GATGCACTTTACTCTAAAAACACTAAC 57.405 33.333 0.00 0.00 0.00 2.34
4800 5208 9.332502 TGATGCACTTTACTCTAAAAACACTAA 57.667 29.630 0.00 0.00 0.00 2.24
4801 5209 8.896320 TGATGCACTTTACTCTAAAAACACTA 57.104 30.769 0.00 0.00 0.00 2.74
4802 5210 7.801716 TGATGCACTTTACTCTAAAAACACT 57.198 32.000 0.00 0.00 0.00 3.55
4807 5215 9.162764 GGACTTATGATGCACTTTACTCTAAAA 57.837 33.333 0.00 0.00 0.00 1.52
4808 5216 8.540388 AGGACTTATGATGCACTTTACTCTAAA 58.460 33.333 0.00 0.00 0.00 1.85
4809 5217 8.079211 AGGACTTATGATGCACTTTACTCTAA 57.921 34.615 0.00 0.00 0.00 2.10
4810 5218 7.661536 AGGACTTATGATGCACTTTACTCTA 57.338 36.000 0.00 0.00 0.00 2.43
4811 5219 6.552445 AGGACTTATGATGCACTTTACTCT 57.448 37.500 0.00 0.00 0.00 3.24
4812 5220 8.718102 TTTAGGACTTATGATGCACTTTACTC 57.282 34.615 0.00 0.00 0.00 2.59
4813 5221 7.281100 GCTTTAGGACTTATGATGCACTTTACT 59.719 37.037 0.00 0.00 0.00 2.24
4814 5222 7.281100 AGCTTTAGGACTTATGATGCACTTTAC 59.719 37.037 0.00 0.00 0.00 2.01
4815 5223 7.338710 AGCTTTAGGACTTATGATGCACTTTA 58.661 34.615 0.00 0.00 0.00 1.85
4816 5224 6.183347 AGCTTTAGGACTTATGATGCACTTT 58.817 36.000 0.00 0.00 0.00 2.66
4817 5225 5.749462 AGCTTTAGGACTTATGATGCACTT 58.251 37.500 0.00 0.00 0.00 3.16
4818 5226 5.365021 AGCTTTAGGACTTATGATGCACT 57.635 39.130 0.00 0.00 0.00 4.40
4819 5227 7.308229 CCAATAGCTTTAGGACTTATGATGCAC 60.308 40.741 0.00 0.00 0.00 4.57
4820 5228 6.712095 CCAATAGCTTTAGGACTTATGATGCA 59.288 38.462 0.00 0.00 0.00 3.96
4821 5229 6.936900 TCCAATAGCTTTAGGACTTATGATGC 59.063 38.462 0.00 0.00 0.00 3.91
4822 5230 7.605691 CCTCCAATAGCTTTAGGACTTATGATG 59.394 40.741 0.00 0.00 0.00 3.07
4823 5231 7.293535 ACCTCCAATAGCTTTAGGACTTATGAT 59.706 37.037 0.00 0.00 0.00 2.45
4824 5232 6.615726 ACCTCCAATAGCTTTAGGACTTATGA 59.384 38.462 0.00 0.00 0.00 2.15
4825 5233 6.708054 CACCTCCAATAGCTTTAGGACTTATG 59.292 42.308 0.00 0.00 0.00 1.90
4826 5234 6.387220 ACACCTCCAATAGCTTTAGGACTTAT 59.613 38.462 0.00 0.00 0.00 1.73
4827 5235 5.724854 ACACCTCCAATAGCTTTAGGACTTA 59.275 40.000 0.00 0.00 0.00 2.24
4828 5236 4.536489 ACACCTCCAATAGCTTTAGGACTT 59.464 41.667 0.00 0.00 0.00 3.01
4829 5237 4.080863 CACACCTCCAATAGCTTTAGGACT 60.081 45.833 0.00 0.00 0.00 3.85
4830 5238 4.192317 CACACCTCCAATAGCTTTAGGAC 58.808 47.826 0.00 0.00 0.00 3.85
4831 5239 3.844211 ACACACCTCCAATAGCTTTAGGA 59.156 43.478 0.00 0.00 0.00 2.94
4832 5240 4.192317 GACACACCTCCAATAGCTTTAGG 58.808 47.826 0.00 0.00 0.00 2.69
4833 5241 4.832248 TGACACACCTCCAATAGCTTTAG 58.168 43.478 0.00 0.00 0.00 1.85
4834 5242 4.901197 TGACACACCTCCAATAGCTTTA 57.099 40.909 0.00 0.00 0.00 1.85
4835 5243 3.788227 TGACACACCTCCAATAGCTTT 57.212 42.857 0.00 0.00 0.00 3.51
4836 5244 3.788227 TTGACACACCTCCAATAGCTT 57.212 42.857 0.00 0.00 0.00 3.74
4837 5245 4.307032 AATTGACACACCTCCAATAGCT 57.693 40.909 0.00 0.00 31.07 3.32
4838 5246 5.648092 ACTAAATTGACACACCTCCAATAGC 59.352 40.000 0.00 0.00 31.07 2.97
4839 5247 6.316390 GGACTAAATTGACACACCTCCAATAG 59.684 42.308 0.00 0.00 31.07 1.73
4840 5248 6.012858 AGGACTAAATTGACACACCTCCAATA 60.013 38.462 0.00 0.00 31.07 1.90
4841 5249 5.010282 GGACTAAATTGACACACCTCCAAT 58.990 41.667 0.00 0.00 32.46 3.16
4842 5250 4.104102 AGGACTAAATTGACACACCTCCAA 59.896 41.667 0.00 0.00 0.00 3.53
4843 5251 3.650942 AGGACTAAATTGACACACCTCCA 59.349 43.478 0.00 0.00 0.00 3.86
4844 5252 4.287766 AGGACTAAATTGACACACCTCC 57.712 45.455 0.00 0.00 0.00 4.30
4845 5253 8.258708 AGTTATAGGACTAAATTGACACACCTC 58.741 37.037 0.00 0.00 0.00 3.85
4846 5254 8.147244 AGTTATAGGACTAAATTGACACACCT 57.853 34.615 0.00 0.00 0.00 4.00
4847 5255 8.788325 AAGTTATAGGACTAAATTGACACACC 57.212 34.615 0.00 0.00 0.00 4.16
4848 5256 9.431887 TGAAGTTATAGGACTAAATTGACACAC 57.568 33.333 0.00 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.