Multiple sequence alignment - TraesCS7B01G238400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G238400 chr7B 100.000 7699 0 0 1 7699 443735908 443743606 0.000000e+00 14218.0
1 TraesCS7B01G238400 chr7B 98.370 552 7 1 1 550 233704841 233704290 0.000000e+00 968.0
2 TraesCS7B01G238400 chr7B 98.364 550 9 0 1 550 152068356 152068905 0.000000e+00 966.0
3 TraesCS7B01G238400 chr7B 85.050 602 66 16 3406 4002 648243997 648243415 6.650000e-165 592.0
4 TraesCS7B01G238400 chr7B 86.019 515 65 6 2870 3379 1295941 1295429 5.250000e-151 545.0
5 TraesCS7B01G238400 chr7B 83.912 547 56 10 7117 7640 219506855 219506318 1.930000e-135 494.0
6 TraesCS7B01G238400 chr7B 82.071 396 55 7 2506 2888 648269781 648269389 2.680000e-84 324.0
7 TraesCS7B01G238400 chr7B 81.443 388 56 7 2495 2869 648162246 648161862 3.490000e-78 303.0
8 TraesCS7B01G238400 chr7D 97.210 3513 53 14 3381 6878 426731563 426735045 0.000000e+00 5903.0
9 TraesCS7B01G238400 chr7D 98.606 1076 14 1 1795 2869 426730488 426731563 0.000000e+00 1903.0
10 TraesCS7B01G238400 chr7D 92.891 1055 40 16 668 1714 426729462 426730489 0.000000e+00 1500.0
11 TraesCS7B01G238400 chr7D 87.345 403 21 14 2870 3266 83994196 83993818 1.190000e-117 435.0
12 TraesCS7B01G238400 chr7D 91.860 86 6 1 1713 1797 579751348 579751263 1.360000e-22 119.0
13 TraesCS7B01G238400 chr7D 100.000 29 0 0 600 628 124538515 124538487 4.000000e-03 54.7
14 TraesCS7B01G238400 chr7A 97.495 2116 43 7 3381 5492 506822170 506820061 0.000000e+00 3605.0
15 TraesCS7B01G238400 chr7A 94.884 1075 35 3 1795 2869 506823224 506822170 0.000000e+00 1663.0
16 TraesCS7B01G238400 chr7A 92.103 1051 49 19 671 1714 506824246 506823223 0.000000e+00 1450.0
17 TraesCS7B01G238400 chr7A 92.771 581 30 9 6306 6878 506819546 506818970 0.000000e+00 830.0
18 TraesCS7B01G238400 chr7A 93.548 403 17 2 5649 6042 506820064 506819662 6.650000e-165 592.0
19 TraesCS7B01G238400 chr7A 87.398 492 45 5 7111 7586 73943835 73944325 4.060000e-152 549.0
20 TraesCS7B01G238400 chr7A 89.197 361 21 10 7118 7474 680379459 680379113 1.190000e-117 435.0
21 TraesCS7B01G238400 chr7A 94.444 162 9 0 5490 5651 494786990 494786829 4.610000e-62 250.0
22 TraesCS7B01G238400 chr7A 81.949 277 20 12 7450 7699 680379099 680378826 2.820000e-49 207.0
23 TraesCS7B01G238400 chr7A 94.286 35 2 0 594 628 708914614 708914648 4.000000e-03 54.7
24 TraesCS7B01G238400 chr6A 98.370 552 7 1 1 550 538053764 538054315 0.000000e+00 968.0
25 TraesCS7B01G238400 chr6A 92.986 442 28 3 2939 3377 21752767 21753208 6.510000e-180 641.0
26 TraesCS7B01G238400 chr6A 88.219 365 24 10 7115 7474 255035240 255035590 1.190000e-112 418.0
27 TraesCS7B01G238400 chr6A 87.978 366 26 9 7113 7474 15629850 15630201 4.300000e-112 416.0
28 TraesCS7B01G238400 chr6A 85.149 404 28 15 2870 3266 154239615 154239993 1.210000e-102 385.0
29 TraesCS7B01G238400 chr6A 82.156 269 19 9 7450 7692 255035604 255035869 3.640000e-48 204.0
30 TraesCS7B01G238400 chr6A 88.000 100 9 3 1711 1808 101295978 101296076 1.760000e-21 115.0
31 TraesCS7B01G238400 chr6A 82.258 124 12 9 1686 1804 501496063 501496181 1.770000e-16 99.0
32 TraesCS7B01G238400 chr6B 98.195 554 7 1 1 551 135435103 135435656 0.000000e+00 965.0
33 TraesCS7B01G238400 chr2B 98.364 550 8 1 1 550 340548145 340548693 0.000000e+00 965.0
34 TraesCS7B01G238400 chr2B 98.185 551 10 0 1 551 699216595 699216045 0.000000e+00 963.0
35 TraesCS7B01G238400 chr2B 97.666 557 13 0 1 557 191739050 191738494 0.000000e+00 957.0
36 TraesCS7B01G238400 chr2B 93.197 441 27 3 2939 3377 435187111 435186672 0.000000e+00 645.0
37 TraesCS7B01G238400 chr2B 93.529 170 11 0 5485 5654 117888408 117888239 3.570000e-63 254.0
38 TraesCS7B01G238400 chr2B 89.000 100 7 4 1713 1809 575874903 575875001 3.770000e-23 121.0
39 TraesCS7B01G238400 chr2B 89.474 95 9 1 1704 1797 89487008 89487102 1.360000e-22 119.0
40 TraesCS7B01G238400 chr5B 98.188 552 8 1 1 550 641105679 641106230 0.000000e+00 963.0
41 TraesCS7B01G238400 chr5B 91.111 180 14 2 5479 5658 70793551 70793374 7.720000e-60 243.0
42 TraesCS7B01G238400 chr5B 89.474 95 8 2 1713 1806 406172763 406172670 1.360000e-22 119.0
43 TraesCS7B01G238400 chr1B 98.182 550 10 0 1 550 404479696 404480245 0.000000e+00 961.0
44 TraesCS7B01G238400 chr1B 93.103 87 5 1 1712 1797 322104546 322104632 8.110000e-25 126.0
45 TraesCS7B01G238400 chr2D 93.483 445 25 4 2939 3380 528421984 528421541 0.000000e+00 658.0
46 TraesCS7B01G238400 chr2D 93.364 437 25 4 2942 3375 366552434 366551999 1.810000e-180 643.0
47 TraesCS7B01G238400 chr2D 86.241 407 43 10 2857 3256 475926703 475927103 5.520000e-116 429.0
48 TraesCS7B01G238400 chr2D 84.017 463 36 17 7270 7699 532646620 532646163 2.000000e-110 411.0
49 TraesCS7B01G238400 chr5D 93.439 442 25 4 2939 3377 74933877 74933437 0.000000e+00 652.0
50 TraesCS7B01G238400 chr5D 92.000 175 12 2 5479 5653 59947673 59947845 2.150000e-60 244.0
51 TraesCS7B01G238400 chr5D 94.574 129 4 2 2860 2988 538439591 538439716 6.100000e-46 196.0
52 TraesCS7B01G238400 chr5D 90.323 93 7 2 1713 1804 487170817 487170908 3.770000e-23 121.0
53 TraesCS7B01G238400 chr5D 89.888 89 8 1 1713 1800 522111513 522111425 6.310000e-21 113.0
54 TraesCS7B01G238400 chr5D 88.172 93 10 1 1705 1796 66292119 66292027 8.170000e-20 110.0
55 TraesCS7B01G238400 chr5D 85.057 87 7 4 550 630 463401815 463401729 4.950000e-12 84.2
56 TraesCS7B01G238400 chr5A 93.439 442 25 4 2940 3377 187098259 187098700 0.000000e+00 652.0
57 TraesCS7B01G238400 chr5A 93.228 443 28 2 2939 3379 672857625 672858067 0.000000e+00 651.0
58 TraesCS7B01G238400 chr5A 92.809 445 29 3 2939 3380 428414448 428414004 6.510000e-180 641.0
59 TraesCS7B01G238400 chr5A 90.426 94 7 2 1713 1805 453762829 453762737 1.050000e-23 122.0
60 TraesCS7B01G238400 chr3A 93.622 439 24 4 2942 3377 732236488 732236925 0.000000e+00 652.0
61 TraesCS7B01G238400 chr3A 84.119 403 33 10 2870 3266 332751553 332751930 2.040000e-95 361.0
62 TraesCS7B01G238400 chr3A 83.623 403 35 11 2870 3265 495960958 495960580 4.420000e-92 350.0
63 TraesCS7B01G238400 chr3A 89.535 86 3 3 550 629 95663158 95663243 3.800000e-18 104.0
64 TraesCS7B01G238400 chrUn 85.945 619 50 9 7113 7699 26080434 26079821 1.820000e-175 627.0
65 TraesCS7B01G238400 chrUn 89.931 288 24 2 7113 7399 267370714 267370997 4.390000e-97 366.0
66 TraesCS7B01G238400 chrUn 89.931 288 24 2 7113 7399 343053437 343053154 4.390000e-97 366.0
67 TraesCS7B01G238400 chrUn 89.931 288 24 2 7113 7399 408534075 408533792 4.390000e-97 366.0
68 TraesCS7B01G238400 chrUn 89.583 96 8 2 1713 1807 23609562 23609468 3.770000e-23 121.0
69 TraesCS7B01G238400 chrUn 88.889 90 6 4 1710 1796 84435468 84435380 2.940000e-19 108.0
70 TraesCS7B01G238400 chrUn 84.946 93 10 4 1711 1800 100223825 100223734 2.960000e-14 91.6
71 TraesCS7B01G238400 chrUn 85.556 90 8 5 1710 1796 41678324 41678411 1.060000e-13 89.8
72 TraesCS7B01G238400 chrUn 83.168 101 14 3 1706 1804 461112277 461112376 1.060000e-13 89.8
73 TraesCS7B01G238400 chrUn 83.516 91 12 3 1711 1799 222975856 222975767 1.780000e-11 82.4
74 TraesCS7B01G238400 chrUn 83.516 91 12 3 1711 1799 303647990 303647901 1.780000e-11 82.4
75 TraesCS7B01G238400 chrUn 82.759 87 9 5 1714 1797 113155857 113155774 1.070000e-08 73.1
76 TraesCS7B01G238400 chrUn 94.737 38 2 0 1713 1750 41178321 41178284 8.340000e-05 60.2
77 TraesCS7B01G238400 chr1A 84.577 603 51 22 7117 7699 504086989 504087569 1.880000e-155 560.0
78 TraesCS7B01G238400 chr1A 84.158 404 33 14 2870 3266 136166756 136167135 5.680000e-96 363.0
79 TraesCS7B01G238400 chr1A 81.852 270 20 9 7450 7693 480837055 480836789 4.710000e-47 200.0
80 TraesCS7B01G238400 chr4D 87.224 407 26 12 2870 3266 314089156 314088766 2.550000e-119 440.0
81 TraesCS7B01G238400 chr4D 90.426 188 13 4 5490 5676 386984668 386984851 7.720000e-60 243.0
82 TraesCS7B01G238400 chr4D 90.000 90 8 1 1713 1801 9574493 9574404 1.760000e-21 115.0
83 TraesCS7B01G238400 chr4D 89.011 91 7 3 1709 1797 213708324 213708413 8.170000e-20 110.0
84 TraesCS7B01G238400 chr4D 88.889 90 9 1 1713 1801 359681480 359681569 8.170000e-20 110.0
85 TraesCS7B01G238400 chr4D 86.957 92 8 4 1710 1798 121405555 121405465 4.920000e-17 100.0
86 TraesCS7B01G238400 chr3D 89.500 200 15 6 5468 5664 87925976 87926172 1.660000e-61 248.0
87 TraesCS7B01G238400 chr3D 88.350 103 8 4 1705 1806 534687043 534687142 3.770000e-23 121.0
88 TraesCS7B01G238400 chr2A 92.529 174 10 3 5481 5651 703708252 703708425 5.970000e-61 246.0
89 TraesCS7B01G238400 chr2A 93.333 165 11 0 5487 5651 419206980 419206816 2.150000e-60 244.0
90 TraesCS7B01G238400 chr4A 89.623 106 7 4 1701 1803 464687378 464687274 1.740000e-26 132.0
91 TraesCS7B01G238400 chr4B 91.111 90 7 1 1713 1801 18440919 18440830 3.770000e-23 121.0
92 TraesCS7B01G238400 chr1D 90.805 87 7 1 1711 1796 477184323 477184237 1.760000e-21 115.0
93 TraesCS7B01G238400 chr1D 89.130 92 5 5 1711 1799 440050356 440050445 8.170000e-20 110.0
94 TraesCS7B01G238400 chr1D 87.234 94 10 2 1712 1804 251295167 251295259 1.060000e-18 106.0
95 TraesCS7B01G238400 chr6D 87.000 100 10 3 1711 1808 84071830 84071928 8.170000e-20 110.0
96 TraesCS7B01G238400 chr6D 89.655 87 8 1 1712 1797 454580599 454580685 8.170000e-20 110.0
97 TraesCS7B01G238400 chr6D 87.640 89 9 2 1709 1796 389608183 389608096 1.370000e-17 102.0
98 TraesCS7B01G238400 chr6D 87.209 86 10 1 1712 1796 5831498 5831583 6.360000e-16 97.1
99 TraesCS7B01G238400 chr6D 100.000 31 0 0 600 630 8105872 8105842 3.000000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G238400 chr7B 443735908 443743606 7698 False 14218 14218 100.000000 1 7699 1 chr7B.!!$F2 7698
1 TraesCS7B01G238400 chr7B 233704290 233704841 551 True 968 968 98.370000 1 550 1 chr7B.!!$R3 549
2 TraesCS7B01G238400 chr7B 152068356 152068905 549 False 966 966 98.364000 1 550 1 chr7B.!!$F1 549
3 TraesCS7B01G238400 chr7B 648243415 648243997 582 True 592 592 85.050000 3406 4002 1 chr7B.!!$R5 596
4 TraesCS7B01G238400 chr7B 1295429 1295941 512 True 545 545 86.019000 2870 3379 1 chr7B.!!$R1 509
5 TraesCS7B01G238400 chr7B 219506318 219506855 537 True 494 494 83.912000 7117 7640 1 chr7B.!!$R2 523
6 TraesCS7B01G238400 chr7D 426729462 426735045 5583 False 3102 5903 96.235667 668 6878 3 chr7D.!!$F1 6210
7 TraesCS7B01G238400 chr7A 506818970 506824246 5276 True 1628 3605 94.160200 671 6878 5 chr7A.!!$R2 6207
8 TraesCS7B01G238400 chr7A 680378826 680379459 633 True 321 435 85.573000 7118 7699 2 chr7A.!!$R3 581
9 TraesCS7B01G238400 chr6A 538053764 538054315 551 False 968 968 98.370000 1 550 1 chr6A.!!$F6 549
10 TraesCS7B01G238400 chr6A 255035240 255035869 629 False 311 418 85.187500 7115 7692 2 chr6A.!!$F7 577
11 TraesCS7B01G238400 chr6B 135435103 135435656 553 False 965 965 98.195000 1 551 1 chr6B.!!$F1 550
12 TraesCS7B01G238400 chr2B 340548145 340548693 548 False 965 965 98.364000 1 550 1 chr2B.!!$F2 549
13 TraesCS7B01G238400 chr2B 699216045 699216595 550 True 963 963 98.185000 1 551 1 chr2B.!!$R4 550
14 TraesCS7B01G238400 chr2B 191738494 191739050 556 True 957 957 97.666000 1 557 1 chr2B.!!$R2 556
15 TraesCS7B01G238400 chr5B 641105679 641106230 551 False 963 963 98.188000 1 550 1 chr5B.!!$F1 549
16 TraesCS7B01G238400 chr1B 404479696 404480245 549 False 961 961 98.182000 1 550 1 chr1B.!!$F2 549
17 TraesCS7B01G238400 chrUn 26079821 26080434 613 True 627 627 85.945000 7113 7699 1 chrUn.!!$R2 586
18 TraesCS7B01G238400 chr1A 504086989 504087569 580 False 560 560 84.577000 7117 7699 1 chr1A.!!$F2 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
824 840 0.680618 CACAAGCAGAAAATGGGCCA 59.319 50.000 9.61 9.61 0.00 5.36 F
1389 1405 0.096976 CCCTGTGCGCGTGATTTTAG 59.903 55.000 8.43 0.00 0.00 1.85 F
3162 3183 0.107165 GGATCAAGTAGGCCCCACAC 60.107 60.000 0.00 0.00 0.00 3.82 F
3311 3333 0.179156 AGCGATGGCATTTTTGAGCG 60.179 50.000 0.00 0.00 43.41 5.03 F
3315 3337 1.994779 GATGGCATTTTTGAGCGGTTG 59.005 47.619 0.00 0.00 0.00 3.77 F
3374 3396 5.656480 ACCGGTGGCATAAATGATAAAAAC 58.344 37.500 6.12 0.00 0.00 2.43 F
3855 3881 5.924254 GCATCACAACCCATCATCATAATTG 59.076 40.000 0.00 0.00 0.00 2.32 F
6010 6047 3.865745 CGTGAGGTTAAATAGCACCAGAG 59.134 47.826 0.00 0.00 35.25 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1771 1787 0.179045 CCTCCGTCCCCTAATGCAAG 60.179 60.000 0.00 0.00 0.00 4.01 R
3294 3316 0.171007 ACCGCTCAAAAATGCCATCG 59.829 50.000 0.00 0.00 0.00 3.84 R
4829 4856 3.604582 CAGGTTCTTCAGGTTCAGGATC 58.395 50.000 0.00 0.00 0.00 3.36 R
5307 5334 5.163622 GGATCACTCCACACAACCATTAATG 60.164 44.000 8.58 8.58 41.64 1.90 R
5487 5515 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90 R
5569 5597 6.859508 CGGATGTATGTAGACGTATTTTAGCA 59.140 38.462 0.00 0.00 0.00 3.49 R
6042 6079 1.167033 AAATCCCCAAGTCAACCCCT 58.833 50.000 0.00 0.00 0.00 4.79 R
6881 6944 0.106719 AACATATTCCGGCCCTGGTG 60.107 55.000 0.00 0.00 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.467035 CCAAGGTAAATGGTTGATGTTGT 57.533 39.130 0.00 0.00 33.08 3.32
340 341 2.701951 GGTCCCGTACCCAATAAGATGA 59.298 50.000 0.00 0.00 43.16 2.92
526 534 2.883122 AAGTTAATGTGGCCCCGTTA 57.117 45.000 0.00 0.00 0.00 3.18
551 559 2.490991 GCACGGGTGTTCTTCTAGTTT 58.509 47.619 0.25 0.00 0.00 2.66
553 561 3.314357 GCACGGGTGTTCTTCTAGTTTTT 59.686 43.478 0.25 0.00 0.00 1.94
557 565 6.480981 CACGGGTGTTCTTCTAGTTTTTCTAA 59.519 38.462 0.00 0.00 0.00 2.10
558 566 7.011669 CACGGGTGTTCTTCTAGTTTTTCTAAA 59.988 37.037 0.00 0.00 0.00 1.85
559 567 7.553760 ACGGGTGTTCTTCTAGTTTTTCTAAAA 59.446 33.333 0.00 0.00 0.00 1.52
560 568 8.400186 CGGGTGTTCTTCTAGTTTTTCTAAAAA 58.600 33.333 0.00 0.00 35.67 1.94
575 583 7.532682 TTTCTAAAAACTTGGTGAAACATGC 57.467 32.000 0.00 0.00 39.98 4.06
576 584 6.214191 TCTAAAAACTTGGTGAAACATGCA 57.786 33.333 0.00 0.00 39.98 3.96
577 585 6.039616 TCTAAAAACTTGGTGAAACATGCAC 58.960 36.000 0.00 0.00 39.98 4.57
578 586 4.470334 AAAACTTGGTGAAACATGCACT 57.530 36.364 0.00 0.00 39.98 4.40
579 587 3.715628 AACTTGGTGAAACATGCACTC 57.284 42.857 0.00 0.00 39.98 3.51
580 588 1.603802 ACTTGGTGAAACATGCACTCG 59.396 47.619 0.00 0.00 39.98 4.18
581 589 1.603802 CTTGGTGAAACATGCACTCGT 59.396 47.619 0.00 0.00 39.98 4.18
582 590 1.674359 TGGTGAAACATGCACTCGTT 58.326 45.000 0.00 0.00 39.98 3.85
583 591 2.020720 TGGTGAAACATGCACTCGTTT 58.979 42.857 9.74 9.74 39.98 3.60
584 592 2.223456 TGGTGAAACATGCACTCGTTTG 60.223 45.455 13.67 0.00 39.98 2.93
585 593 2.032799 GGTGAAACATGCACTCGTTTGA 59.967 45.455 13.67 4.75 39.98 2.69
586 594 3.035942 GTGAAACATGCACTCGTTTGAC 58.964 45.455 13.67 11.99 35.53 3.18
587 595 2.942376 TGAAACATGCACTCGTTTGACT 59.058 40.909 13.67 0.00 35.53 3.41
588 596 3.376859 TGAAACATGCACTCGTTTGACTT 59.623 39.130 13.67 0.00 35.53 3.01
589 597 4.142491 TGAAACATGCACTCGTTTGACTTT 60.142 37.500 13.67 0.00 35.53 2.66
590 598 4.370364 AACATGCACTCGTTTGACTTTT 57.630 36.364 0.00 0.00 0.00 2.27
591 599 3.694734 ACATGCACTCGTTTGACTTTTG 58.305 40.909 0.00 0.00 0.00 2.44
592 600 3.376859 ACATGCACTCGTTTGACTTTTGA 59.623 39.130 0.00 0.00 0.00 2.69
593 601 4.142491 ACATGCACTCGTTTGACTTTTGAA 60.142 37.500 0.00 0.00 0.00 2.69
594 602 4.427096 TGCACTCGTTTGACTTTTGAAA 57.573 36.364 0.00 0.00 0.00 2.69
595 603 4.799678 TGCACTCGTTTGACTTTTGAAAA 58.200 34.783 0.00 0.00 0.00 2.29
596 604 5.223382 TGCACTCGTTTGACTTTTGAAAAA 58.777 33.333 0.00 0.00 0.00 1.94
621 629 8.459911 AAAACCTTATATAAAGGAACGGATGG 57.540 34.615 10.67 4.11 39.81 3.51
622 630 7.383156 AACCTTATATAAAGGAACGGATGGA 57.617 36.000 10.67 0.00 39.81 3.41
623 631 7.005709 ACCTTATATAAAGGAACGGATGGAG 57.994 40.000 10.67 0.00 39.81 3.86
624 632 6.557633 ACCTTATATAAAGGAACGGATGGAGT 59.442 38.462 10.67 0.00 39.81 3.85
625 633 7.731688 ACCTTATATAAAGGAACGGATGGAGTA 59.268 37.037 10.67 0.00 39.81 2.59
626 634 8.759782 CCTTATATAAAGGAACGGATGGAGTAT 58.240 37.037 0.00 0.00 39.81 2.12
630 638 4.837093 AAGGAACGGATGGAGTATTTCA 57.163 40.909 0.00 0.00 0.00 2.69
631 639 4.138487 AGGAACGGATGGAGTATTTCAC 57.862 45.455 0.00 0.00 0.00 3.18
632 640 3.517901 AGGAACGGATGGAGTATTTCACA 59.482 43.478 0.00 0.00 0.00 3.58
633 641 4.019681 AGGAACGGATGGAGTATTTCACAA 60.020 41.667 0.00 0.00 0.00 3.33
634 642 4.698304 GGAACGGATGGAGTATTTCACAAA 59.302 41.667 0.00 0.00 0.00 2.83
635 643 5.182380 GGAACGGATGGAGTATTTCACAAAA 59.818 40.000 0.00 0.00 0.00 2.44
636 644 6.294286 GGAACGGATGGAGTATTTCACAAAAA 60.294 38.462 0.00 0.00 0.00 1.94
637 645 6.834168 ACGGATGGAGTATTTCACAAAAAT 57.166 33.333 0.00 0.00 0.00 1.82
638 646 7.931578 ACGGATGGAGTATTTCACAAAAATA 57.068 32.000 0.00 0.00 0.00 1.40
639 647 8.343168 ACGGATGGAGTATTTCACAAAAATAA 57.657 30.769 0.00 0.00 0.00 1.40
640 648 8.798402 ACGGATGGAGTATTTCACAAAAATAAA 58.202 29.630 0.00 0.00 0.00 1.40
641 649 9.632807 CGGATGGAGTATTTCACAAAAATAAAA 57.367 29.630 0.00 0.00 0.00 1.52
734 750 6.465439 AAACCGTGAAGGAAAGAAGAAAAT 57.535 33.333 0.00 0.00 45.00 1.82
761 777 3.932545 AAAAACTGCCAATATGCGTGA 57.067 38.095 0.00 0.00 0.00 4.35
762 778 3.932545 AAAACTGCCAATATGCGTGAA 57.067 38.095 0.00 0.00 0.00 3.18
763 779 3.932545 AAACTGCCAATATGCGTGAAA 57.067 38.095 0.00 0.00 0.00 2.69
764 780 3.932545 AACTGCCAATATGCGTGAAAA 57.067 38.095 0.00 0.00 0.00 2.29
765 781 3.932545 ACTGCCAATATGCGTGAAAAA 57.067 38.095 0.00 0.00 0.00 1.94
766 782 4.454728 ACTGCCAATATGCGTGAAAAAT 57.545 36.364 0.00 0.00 0.00 1.82
767 783 5.574891 ACTGCCAATATGCGTGAAAAATA 57.425 34.783 0.00 0.00 0.00 1.40
787 803 3.793797 AAACAGAAACCAGAAAACCCG 57.206 42.857 0.00 0.00 0.00 5.28
788 804 1.029681 ACAGAAACCAGAAAACCCGC 58.970 50.000 0.00 0.00 0.00 6.13
807 823 2.327940 GCGAACAGCCACACACAC 59.672 61.111 0.00 0.00 40.81 3.82
824 840 0.680618 CACAAGCAGAAAATGGGCCA 59.319 50.000 9.61 9.61 0.00 5.36
970 986 3.973516 CCGCTGTAGCCGCCGATA 61.974 66.667 0.00 0.00 37.91 2.92
1386 1402 3.055719 CCCCTGTGCGCGTGATTT 61.056 61.111 8.43 0.00 0.00 2.17
1387 1403 2.625823 CCCCTGTGCGCGTGATTTT 61.626 57.895 8.43 0.00 0.00 1.82
1388 1404 1.302383 CCCCTGTGCGCGTGATTTTA 61.302 55.000 8.43 0.00 0.00 1.52
1389 1405 0.096976 CCCTGTGCGCGTGATTTTAG 59.903 55.000 8.43 0.00 0.00 1.85
1390 1406 0.521242 CCTGTGCGCGTGATTTTAGC 60.521 55.000 8.43 0.00 0.00 3.09
1435 1451 2.331265 GCAACTTTGCGGGTCTTCT 58.669 52.632 0.00 0.00 45.11 2.85
1448 1464 2.633481 GGGTCTTCTACTCTTGGTGTGT 59.367 50.000 0.00 0.00 0.00 3.72
1505 1521 9.143155 ACCAGTAAAGAAATCTTGGTGTTAAAT 57.857 29.630 4.18 0.00 36.12 1.40
1513 1529 7.754924 AGAAATCTTGGTGTTAAATTACATGCG 59.245 33.333 0.00 0.00 0.00 4.73
1529 1545 3.255642 ACATGCGTATTTGGAAGCAAAGT 59.744 39.130 0.00 0.00 43.19 2.66
1621 1637 5.140454 TGGAAGAAGATGATGACGGAGATA 58.860 41.667 0.00 0.00 0.00 1.98
1626 1642 5.957168 AGAAGATGATGACGGAGATATGGAT 59.043 40.000 0.00 0.00 0.00 3.41
1712 1728 8.007742 TGGTAATACATTTGGGGCATATTAGTT 58.992 33.333 0.00 0.00 0.00 2.24
1713 1729 9.523168 GGTAATACATTTGGGGCATATTAGTTA 57.477 33.333 0.00 0.00 0.00 2.24
1716 1732 8.863872 ATACATTTGGGGCATATTAGTTACTC 57.136 34.615 0.00 0.00 0.00 2.59
1717 1733 6.068670 ACATTTGGGGCATATTAGTTACTCC 58.931 40.000 0.00 0.00 0.00 3.85
1718 1734 4.717279 TTGGGGCATATTAGTTACTCCC 57.283 45.455 0.00 0.00 0.00 4.30
1719 1735 3.949430 TGGGGCATATTAGTTACTCCCT 58.051 45.455 4.84 0.00 34.47 4.20
1720 1736 3.908103 TGGGGCATATTAGTTACTCCCTC 59.092 47.826 4.84 0.00 34.47 4.30
1721 1737 3.263681 GGGGCATATTAGTTACTCCCTCC 59.736 52.174 4.84 0.00 32.98 4.30
1722 1738 3.056035 GGGCATATTAGTTACTCCCTCCG 60.056 52.174 0.00 0.00 0.00 4.63
1723 1739 3.577415 GGCATATTAGTTACTCCCTCCGT 59.423 47.826 0.00 0.00 0.00 4.69
1724 1740 4.321824 GGCATATTAGTTACTCCCTCCGTC 60.322 50.000 0.00 0.00 0.00 4.79
1725 1741 4.321824 GCATATTAGTTACTCCCTCCGTCC 60.322 50.000 0.00 0.00 0.00 4.79
1726 1742 2.149973 TTAGTTACTCCCTCCGTCCC 57.850 55.000 0.00 0.00 0.00 4.46
1727 1743 1.002069 TAGTTACTCCCTCCGTCCCA 58.998 55.000 0.00 0.00 0.00 4.37
1728 1744 0.338814 AGTTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
1729 1745 1.572415 AGTTACTCCCTCCGTCCCATA 59.428 52.381 0.00 0.00 0.00 2.74
1730 1746 2.023695 AGTTACTCCCTCCGTCCCATAA 60.024 50.000 0.00 0.00 0.00 1.90
1731 1747 2.970640 GTTACTCCCTCCGTCCCATAAT 59.029 50.000 0.00 0.00 0.00 1.28
1732 1748 4.140853 AGTTACTCCCTCCGTCCCATAATA 60.141 45.833 0.00 0.00 0.00 0.98
1733 1749 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
1734 1750 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
1735 1751 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
1736 1752 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
1737 1753 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
1738 1754 5.021458 TCCCTCCGTCCCATAATATAAGAC 58.979 45.833 0.00 0.00 0.00 3.01
1740 1756 4.461781 CCTCCGTCCCATAATATAAGACGT 59.538 45.833 17.31 0.00 46.62 4.34
1741 1757 5.047519 CCTCCGTCCCATAATATAAGACGTT 60.048 44.000 17.31 0.00 46.62 3.99
1742 1758 6.017400 TCCGTCCCATAATATAAGACGTTC 57.983 41.667 17.31 0.00 46.62 3.95
1743 1759 5.771666 TCCGTCCCATAATATAAGACGTTCT 59.228 40.000 17.31 0.00 46.62 3.01
1744 1760 6.266103 TCCGTCCCATAATATAAGACGTTCTT 59.734 38.462 17.31 0.00 46.62 2.52
1745 1761 6.927381 CCGTCCCATAATATAAGACGTTCTTT 59.073 38.462 17.31 0.00 46.62 2.52
1746 1762 7.095774 CCGTCCCATAATATAAGACGTTCTTTG 60.096 40.741 17.31 3.91 46.62 2.77
1747 1763 7.650504 CGTCCCATAATATAAGACGTTCTTTGA 59.349 37.037 13.04 0.00 43.89 2.69
1748 1764 8.762426 GTCCCATAATATAAGACGTTCTTTGAC 58.238 37.037 5.74 0.00 37.89 3.18
1749 1765 8.479689 TCCCATAATATAAGACGTTCTTTGACA 58.520 33.333 5.74 0.00 37.89 3.58
1750 1766 8.765219 CCCATAATATAAGACGTTCTTTGACAG 58.235 37.037 5.74 0.00 37.89 3.51
1751 1767 9.529325 CCATAATATAAGACGTTCTTTGACAGA 57.471 33.333 5.74 0.00 37.89 3.41
1754 1770 7.813852 ATATAAGACGTTCTTTGACAGACAC 57.186 36.000 5.74 0.00 37.89 3.67
1755 1771 3.802948 AGACGTTCTTTGACAGACACT 57.197 42.857 0.00 0.00 0.00 3.55
1756 1772 4.913335 AGACGTTCTTTGACAGACACTA 57.087 40.909 0.00 0.00 0.00 2.74
1757 1773 4.861210 AGACGTTCTTTGACAGACACTAG 58.139 43.478 0.00 0.00 0.00 2.57
1758 1774 4.338682 AGACGTTCTTTGACAGACACTAGT 59.661 41.667 0.00 0.00 0.00 2.57
1759 1775 4.360563 ACGTTCTTTGACAGACACTAGTG 58.639 43.478 21.44 21.44 0.00 2.74
1760 1776 9.445419 AAGACGTTCTTTGACAGACACTAGTGT 62.445 40.741 28.27 28.27 39.07 3.55
1786 1802 2.403252 AAGTCTTGCATTAGGGGACG 57.597 50.000 0.00 0.00 32.86 4.79
1787 1803 0.541863 AGTCTTGCATTAGGGGACGG 59.458 55.000 0.00 0.00 32.86 4.79
1788 1804 0.539986 GTCTTGCATTAGGGGACGGA 59.460 55.000 0.00 0.00 0.00 4.69
1789 1805 0.830648 TCTTGCATTAGGGGACGGAG 59.169 55.000 0.00 0.00 0.00 4.63
1790 1806 0.179045 CTTGCATTAGGGGACGGAGG 60.179 60.000 0.00 0.00 0.00 4.30
1791 1807 1.632018 TTGCATTAGGGGACGGAGGG 61.632 60.000 0.00 0.00 0.00 4.30
1792 1808 1.764854 GCATTAGGGGACGGAGGGA 60.765 63.158 0.00 0.00 0.00 4.20
1793 1809 1.759459 GCATTAGGGGACGGAGGGAG 61.759 65.000 0.00 0.00 0.00 4.30
1830 1846 5.971493 ACTCCTAGGAGATTGCTATACCTT 58.029 41.667 39.72 14.08 44.53 3.50
1976 1993 4.279169 AGTTTGGTCCTTGTCATGACATTG 59.721 41.667 28.32 21.99 41.52 2.82
1981 1998 5.240623 TGGTCCTTGTCATGACATTGTAAAC 59.759 40.000 28.32 18.58 41.52 2.01
1984 2001 7.120579 GGTCCTTGTCATGACATTGTAAACATA 59.879 37.037 28.32 9.17 41.52 2.29
2015 2032 8.710835 AAAGATTTAACCGTTTTGTGTCATTT 57.289 26.923 0.00 0.00 0.00 2.32
2614 2631 6.841755 AGTTCAGAGGTTCCTATGCTAATAGT 59.158 38.462 8.43 0.00 34.96 2.12
2769 2786 2.744202 CCGGTTGATGAAGAAGGACAAG 59.256 50.000 0.00 0.00 0.00 3.16
2868 2885 8.617809 GCGGAGGTAATTCATAGTTTATTTTGA 58.382 33.333 0.00 0.00 0.00 2.69
2872 2889 9.990868 AGGTAATTCATAGTTTATTTTGAGGGT 57.009 29.630 0.00 0.00 0.00 4.34
2903 2920 7.564793 TCATTTATATGCCACTAGTTGTGTCT 58.435 34.615 4.03 0.00 44.81 3.41
2913 2930 5.335269 CCACTAGTTGTGTCTCACTACTCAG 60.335 48.000 16.88 14.63 44.27 3.35
2925 2942 6.091441 GTCTCACTACTCAGTTTTGCCATTAG 59.909 42.308 0.00 0.00 30.46 1.73
2928 2945 6.650807 TCACTACTCAGTTTTGCCATTAGAAG 59.349 38.462 0.00 0.00 30.46 2.85
2937 2954 8.564574 CAGTTTTGCCATTAGAAGTTACAACTA 58.435 33.333 0.00 0.00 38.57 2.24
2940 2957 7.900782 TTGCCATTAGAAGTTACAACTACTC 57.099 36.000 0.00 0.00 38.57 2.59
2954 2971 4.759693 ACAACTACTCAAAAATGCCATCGA 59.240 37.500 0.00 0.00 0.00 3.59
2960 2977 4.202080 ACTCAAAAATGCCATCGATCCATG 60.202 41.667 8.42 0.00 0.00 3.66
2966 2983 1.085091 GCCATCGATCCATGAGATGC 58.915 55.000 1.38 0.00 40.11 3.91
2967 2984 1.338864 GCCATCGATCCATGAGATGCT 60.339 52.381 1.38 0.00 40.11 3.79
2988 3005 4.328169 GCTTGCTCAAAAATGCCATTAGAC 59.672 41.667 0.00 0.00 0.00 2.59
2995 3012 7.622672 GCTCAAAAATGCCATTAGACATTGTTG 60.623 37.037 10.87 10.87 46.19 3.33
2998 3015 8.344098 CAAAAATGCCATTAGACATTGTTGTTT 58.656 29.630 9.46 0.00 42.59 2.83
3001 3018 6.154203 TGCCATTAGACATTGTTGTTTTCA 57.846 33.333 0.00 0.00 35.79 2.69
3002 3019 5.982516 TGCCATTAGACATTGTTGTTTTCAC 59.017 36.000 0.00 0.00 35.79 3.18
3012 3029 2.178783 GTTGTTTTCACGTCAAACCCG 58.821 47.619 14.47 0.00 33.83 5.28
3015 3032 3.005554 TGTTTTCACGTCAAACCCGTTA 58.994 40.909 14.47 0.00 36.17 3.18
3025 3042 4.154556 CGTCAAACCCGTTAACCATGTTAT 59.845 41.667 0.00 0.00 0.00 1.89
3036 3053 9.796120 CCGTTAACCATGTTATATGACAAAAAT 57.204 29.630 4.23 0.00 32.47 1.82
3052 3070 5.580022 ACAAAAATAAGCCTAGACCCACAT 58.420 37.500 0.00 0.00 0.00 3.21
3056 3074 1.958288 AAGCCTAGACCCACATGTCT 58.042 50.000 0.00 0.00 46.90 3.41
3058 3076 0.905357 GCCTAGACCCACATGTCTGT 59.095 55.000 0.00 0.00 45.03 3.41
3061 3079 2.834549 CCTAGACCCACATGTCTGTTCT 59.165 50.000 0.00 0.00 45.03 3.01
3074 3093 6.210385 ACATGTCTGTTCTCTCTACTCACAAT 59.790 38.462 0.00 0.00 28.70 2.71
3084 3103 8.354711 TCTCTCTACTCACAATGATAAGTGTT 57.645 34.615 0.00 0.00 37.07 3.32
3087 3108 6.640518 TCTACTCACAATGATAAGTGTTCCC 58.359 40.000 0.00 0.00 37.07 3.97
3104 3125 3.764237 TCCCCACTTGTCAAGAGTAAC 57.236 47.619 19.53 0.00 0.00 2.50
3109 3130 3.251004 CCACTTGTCAAGAGTAACCAAGC 59.749 47.826 19.53 0.00 36.78 4.01
3110 3131 3.059597 CACTTGTCAAGAGTAACCAAGCG 60.060 47.826 19.53 0.00 36.78 4.68
3155 3176 2.044123 CCTGTTGGGATCAAGTAGGC 57.956 55.000 0.00 0.00 34.08 3.93
3157 3178 0.623723 TGTTGGGATCAAGTAGGCCC 59.376 55.000 0.00 0.00 41.08 5.80
3162 3183 0.107165 GGATCAAGTAGGCCCCACAC 60.107 60.000 0.00 0.00 0.00 3.82
3169 3190 4.536888 TCAAGTAGGCCCCACACTTTATTA 59.463 41.667 0.00 0.00 30.20 0.98
3180 3201 7.819900 GCCCCACACTTTATTATAGTGAGATAG 59.180 40.741 17.70 6.37 44.52 2.08
3191 3212 3.228188 AGTGAGATAGAGGGAGAGCTG 57.772 52.381 0.00 0.00 0.00 4.24
3202 3223 1.028868 GGAGAGCTGGCATGTTGGTC 61.029 60.000 0.00 0.38 0.00 4.02
3209 3230 0.998928 TGGCATGTTGGTCCATAGGT 59.001 50.000 0.00 0.00 0.00 3.08
3214 3235 5.103898 TGGCATGTTGGTCCATAGGTATTTA 60.104 40.000 0.00 0.00 0.00 1.40
3219 3240 6.285224 TGTTGGTCCATAGGTATTTATGTCG 58.715 40.000 0.00 0.00 30.65 4.35
3231 3252 8.319143 AGGTATTTATGTCGTTATAACATGGC 57.681 34.615 15.67 2.59 37.86 4.40
3275 3296 4.741321 AATGGTATCCAGTGGCATTTTG 57.259 40.909 3.51 0.00 36.75 2.44
3282 3304 1.274167 CCAGTGGCATTTTGAGCATGT 59.726 47.619 0.00 0.00 0.00 3.21
3284 3306 1.965643 AGTGGCATTTTGAGCATGTGT 59.034 42.857 0.00 0.00 0.00 3.72
3289 3311 4.168760 GGCATTTTGAGCATGTGTCTAAC 58.831 43.478 0.00 0.00 0.00 2.34
3294 3316 2.337583 TGAGCATGTGTCTAACGAAGC 58.662 47.619 0.00 0.00 0.00 3.86
3311 3333 0.179156 AGCGATGGCATTTTTGAGCG 60.179 50.000 0.00 0.00 43.41 5.03
3315 3337 1.994779 GATGGCATTTTTGAGCGGTTG 59.005 47.619 0.00 0.00 0.00 3.77
3374 3396 5.656480 ACCGGTGGCATAAATGATAAAAAC 58.344 37.500 6.12 0.00 0.00 2.43
3379 3401 7.053498 GGTGGCATAAATGATAAAAACCCAAT 58.947 34.615 0.00 0.00 0.00 3.16
3855 3881 5.924254 GCATCACAACCCATCATCATAATTG 59.076 40.000 0.00 0.00 0.00 2.32
4261 4287 7.159322 TGTTCTAACCTTTACACTTTTGCAA 57.841 32.000 0.00 0.00 0.00 4.08
4829 4856 8.355913 AGAAAGTGAAAGCTTTAAATGAAGAGG 58.644 33.333 12.68 0.00 38.64 3.69
5569 5597 6.823689 ACGGAGCAAAATAAGTGAATCTACAT 59.176 34.615 0.00 0.00 0.00 2.29
5704 5732 9.141400 ACGATAAGACTTCTTTTCTGTGAATAC 57.859 33.333 0.00 0.00 37.40 1.89
5956 5993 6.481644 CACTTATCCTCTCCTGAAGCATTTAC 59.518 42.308 0.00 0.00 0.00 2.01
5957 5994 3.914426 TCCTCTCCTGAAGCATTTACC 57.086 47.619 0.00 0.00 0.00 2.85
6010 6047 3.865745 CGTGAGGTTAAATAGCACCAGAG 59.134 47.826 0.00 0.00 35.25 3.35
6042 6079 2.493675 GCAGTATGGCCGATCTATGAGA 59.506 50.000 0.00 0.00 35.86 3.27
6118 6155 8.654230 TTCTTGCTTGATGAGAATAGATACAC 57.346 34.615 0.00 0.00 0.00 2.90
6119 6156 7.212976 TCTTGCTTGATGAGAATAGATACACC 58.787 38.462 0.00 0.00 0.00 4.16
6120 6157 6.484364 TGCTTGATGAGAATAGATACACCA 57.516 37.500 0.00 0.00 0.00 4.17
6121 6158 6.888105 TGCTTGATGAGAATAGATACACCAA 58.112 36.000 0.00 0.00 0.00 3.67
6122 6159 6.988580 TGCTTGATGAGAATAGATACACCAAG 59.011 38.462 0.00 0.00 0.00 3.61
6123 6160 7.147672 TGCTTGATGAGAATAGATACACCAAGA 60.148 37.037 0.00 0.00 31.69 3.02
6124 6161 7.170658 GCTTGATGAGAATAGATACACCAAGAC 59.829 40.741 0.00 0.00 31.69 3.01
6125 6162 7.904558 TGATGAGAATAGATACACCAAGACT 57.095 36.000 0.00 0.00 0.00 3.24
6126 6163 7.946207 TGATGAGAATAGATACACCAAGACTC 58.054 38.462 0.00 0.00 0.00 3.36
6127 6164 7.782168 TGATGAGAATAGATACACCAAGACTCT 59.218 37.037 0.00 0.00 0.00 3.24
6128 6165 7.962995 TGAGAATAGATACACCAAGACTCTT 57.037 36.000 0.00 0.00 0.00 2.85
6129 6166 8.367660 TGAGAATAGATACACCAAGACTCTTT 57.632 34.615 0.00 0.00 0.00 2.52
6130 6167 9.475620 TGAGAATAGATACACCAAGACTCTTTA 57.524 33.333 0.00 0.00 0.00 1.85
6136 6173 8.824756 AGATACACCAAGACTCTTTATGTAGA 57.175 34.615 13.62 0.45 0.00 2.59
6219 6257 6.018589 AGAAAATTGTCTTAAGCTCAAGCC 57.981 37.500 14.64 0.00 43.38 4.35
6323 6377 1.103398 GGCATAGTGGCATGTGGGTC 61.103 60.000 0.00 0.00 43.14 4.46
6374 6431 6.192970 ACTATACCCTTGATTCCCTTGATG 57.807 41.667 0.00 0.00 0.00 3.07
6382 6439 5.361857 CCTTGATTCCCTTGATGCAGTTATT 59.638 40.000 0.00 0.00 0.00 1.40
6484 6546 1.061131 CGGCAGCAGTTGATTAAGACG 59.939 52.381 0.00 0.00 0.00 4.18
6635 6697 5.875359 GGTCATTCAGAGAGTAAAACCGAAT 59.125 40.000 0.00 0.00 0.00 3.34
6774 6836 2.556559 GGACCTGGGTTTTCTTGCCATA 60.557 50.000 0.00 0.00 0.00 2.74
6878 6941 0.676736 TTTTGGGGTGCGATTGTTCC 59.323 50.000 0.00 0.00 0.00 3.62
6879 6942 0.178975 TTTGGGGTGCGATTGTTCCT 60.179 50.000 0.00 0.00 0.00 3.36
6880 6943 0.893270 TTGGGGTGCGATTGTTCCTG 60.893 55.000 0.00 0.00 0.00 3.86
6881 6944 2.700773 GGGGTGCGATTGTTCCTGC 61.701 63.158 0.00 0.00 0.00 4.85
6882 6945 1.971167 GGGTGCGATTGTTCCTGCA 60.971 57.895 0.00 0.00 34.44 4.41
6884 6947 3.667087 TGCGATTGTTCCTGCACC 58.333 55.556 0.00 0.00 31.31 5.01
6885 6948 1.228094 TGCGATTGTTCCTGCACCA 60.228 52.632 0.00 0.00 31.31 4.17
6886 6949 1.236616 TGCGATTGTTCCTGCACCAG 61.237 55.000 0.00 0.00 31.31 4.00
6895 6958 4.431131 CTGCACCAGGGCCGGAAT 62.431 66.667 19.10 0.00 0.00 3.01
6896 6959 3.012119 TGCACCAGGGCCGGAATA 61.012 61.111 19.10 3.99 0.00 1.75
6897 6960 2.343475 CTGCACCAGGGCCGGAATAT 62.343 60.000 19.10 0.00 0.00 1.28
6898 6961 1.898574 GCACCAGGGCCGGAATATG 60.899 63.158 19.10 9.19 0.00 1.78
6899 6962 1.531748 CACCAGGGCCGGAATATGT 59.468 57.895 19.10 0.00 0.00 2.29
6900 6963 0.106719 CACCAGGGCCGGAATATGTT 60.107 55.000 19.10 0.00 0.00 2.71
6901 6964 0.629058 ACCAGGGCCGGAATATGTTT 59.371 50.000 19.10 0.00 0.00 2.83
6902 6965 1.032014 CCAGGGCCGGAATATGTTTG 58.968 55.000 5.05 0.00 0.00 2.93
6903 6966 1.684869 CCAGGGCCGGAATATGTTTGT 60.685 52.381 5.05 0.00 0.00 2.83
6904 6967 2.422235 CCAGGGCCGGAATATGTTTGTA 60.422 50.000 5.05 0.00 0.00 2.41
6905 6968 2.616842 CAGGGCCGGAATATGTTTGTAC 59.383 50.000 5.05 0.00 0.00 2.90
6906 6969 1.951602 GGGCCGGAATATGTTTGTACC 59.048 52.381 5.05 0.00 0.00 3.34
6907 6970 2.645802 GGCCGGAATATGTTTGTACCA 58.354 47.619 5.05 0.00 0.00 3.25
6908 6971 2.616842 GGCCGGAATATGTTTGTACCAG 59.383 50.000 5.05 0.00 0.00 4.00
6909 6972 2.616842 GCCGGAATATGTTTGTACCAGG 59.383 50.000 5.05 0.00 0.00 4.45
6910 6973 3.211045 CCGGAATATGTTTGTACCAGGG 58.789 50.000 0.00 0.00 0.00 4.45
6911 6974 3.118186 CCGGAATATGTTTGTACCAGGGA 60.118 47.826 0.00 0.00 0.00 4.20
6912 6975 4.519213 CGGAATATGTTTGTACCAGGGAA 58.481 43.478 0.00 0.00 0.00 3.97
6913 6976 4.574828 CGGAATATGTTTGTACCAGGGAAG 59.425 45.833 0.00 0.00 0.00 3.46
6914 6977 5.506708 GGAATATGTTTGTACCAGGGAAGT 58.493 41.667 0.00 0.00 0.00 3.01
6915 6978 5.589050 GGAATATGTTTGTACCAGGGAAGTC 59.411 44.000 0.00 0.00 0.00 3.01
6916 6979 2.536761 TGTTTGTACCAGGGAAGTCG 57.463 50.000 0.00 0.00 0.00 4.18
6917 6980 1.154197 GTTTGTACCAGGGAAGTCGC 58.846 55.000 0.00 0.00 0.00 5.19
6918 6981 0.759959 TTTGTACCAGGGAAGTCGCA 59.240 50.000 0.00 0.00 0.00 5.10
6919 6982 0.759959 TTGTACCAGGGAAGTCGCAA 59.240 50.000 0.00 0.00 0.00 4.85
6920 6983 0.320374 TGTACCAGGGAAGTCGCAAG 59.680 55.000 0.00 0.00 0.00 4.01
6921 6984 0.320697 GTACCAGGGAAGTCGCAAGT 59.679 55.000 0.00 0.00 39.48 3.16
6922 6985 1.053424 TACCAGGGAAGTCGCAAGTT 58.947 50.000 0.00 0.00 39.48 2.66
6923 6986 1.053424 ACCAGGGAAGTCGCAAGTTA 58.947 50.000 0.00 0.00 39.48 2.24
6924 6987 1.002087 ACCAGGGAAGTCGCAAGTTAG 59.998 52.381 0.00 0.00 39.48 2.34
6925 6988 1.676014 CCAGGGAAGTCGCAAGTTAGG 60.676 57.143 0.00 0.00 39.48 2.69
6926 6989 1.275291 CAGGGAAGTCGCAAGTTAGGA 59.725 52.381 0.00 0.00 39.48 2.94
6927 6990 2.093447 CAGGGAAGTCGCAAGTTAGGAT 60.093 50.000 0.00 0.00 39.48 3.24
6928 6991 3.132289 CAGGGAAGTCGCAAGTTAGGATA 59.868 47.826 0.00 0.00 39.48 2.59
6929 6992 3.385111 AGGGAAGTCGCAAGTTAGGATAG 59.615 47.826 0.00 0.00 39.48 2.08
6930 6993 3.132467 GGGAAGTCGCAAGTTAGGATAGT 59.868 47.826 0.00 0.00 39.48 2.12
6931 6994 4.113354 GGAAGTCGCAAGTTAGGATAGTG 58.887 47.826 0.00 0.00 39.48 2.74
6932 6995 4.381718 GGAAGTCGCAAGTTAGGATAGTGT 60.382 45.833 0.00 0.00 39.48 3.55
6933 6996 4.803098 AGTCGCAAGTTAGGATAGTGTT 57.197 40.909 0.00 0.00 39.48 3.32
6934 6997 5.148651 AGTCGCAAGTTAGGATAGTGTTT 57.851 39.130 0.00 0.00 39.48 2.83
6935 6998 5.548406 AGTCGCAAGTTAGGATAGTGTTTT 58.452 37.500 0.00 0.00 39.48 2.43
6936 6999 5.995897 AGTCGCAAGTTAGGATAGTGTTTTT 59.004 36.000 0.00 0.00 39.48 1.94
6937 7000 6.073222 AGTCGCAAGTTAGGATAGTGTTTTTG 60.073 38.462 0.00 0.00 39.48 2.44
6938 7001 5.761234 TCGCAAGTTAGGATAGTGTTTTTGT 59.239 36.000 0.00 0.00 39.48 2.83
6939 7002 6.073440 TCGCAAGTTAGGATAGTGTTTTTGTC 60.073 38.462 0.00 0.00 39.48 3.18
6940 7003 6.073222 CGCAAGTTAGGATAGTGTTTTTGTCT 60.073 38.462 0.00 0.00 0.00 3.41
6941 7004 7.117236 CGCAAGTTAGGATAGTGTTTTTGTCTA 59.883 37.037 0.00 0.00 0.00 2.59
6942 7005 8.947115 GCAAGTTAGGATAGTGTTTTTGTCTAT 58.053 33.333 0.00 0.00 0.00 1.98
6947 7010 9.802039 TTAGGATAGTGTTTTTGTCTATTTGGT 57.198 29.630 0.00 0.00 0.00 3.67
6949 7012 9.975218 AGGATAGTGTTTTTGTCTATTTGGTAT 57.025 29.630 0.00 0.00 0.00 2.73
6984 7047 8.947055 ACAAAATTCTAAACACATTTGCTTCT 57.053 26.923 0.00 0.00 32.49 2.85
6985 7048 9.034544 ACAAAATTCTAAACACATTTGCTTCTC 57.965 29.630 0.00 0.00 32.49 2.87
6986 7049 7.858052 AAATTCTAAACACATTTGCTTCTCG 57.142 32.000 0.00 0.00 0.00 4.04
6987 7050 6.560253 ATTCTAAACACATTTGCTTCTCGT 57.440 33.333 0.00 0.00 0.00 4.18
6988 7051 5.591643 TCTAAACACATTTGCTTCTCGTC 57.408 39.130 0.00 0.00 0.00 4.20
6989 7052 3.626028 AAACACATTTGCTTCTCGTCC 57.374 42.857 0.00 0.00 0.00 4.79
6990 7053 2.550830 ACACATTTGCTTCTCGTCCT 57.449 45.000 0.00 0.00 0.00 3.85
6991 7054 2.146342 ACACATTTGCTTCTCGTCCTG 58.854 47.619 0.00 0.00 0.00 3.86
6992 7055 2.146342 CACATTTGCTTCTCGTCCTGT 58.854 47.619 0.00 0.00 0.00 4.00
6993 7056 2.158449 CACATTTGCTTCTCGTCCTGTC 59.842 50.000 0.00 0.00 0.00 3.51
6994 7057 2.037772 ACATTTGCTTCTCGTCCTGTCT 59.962 45.455 0.00 0.00 0.00 3.41
6995 7058 2.154854 TTTGCTTCTCGTCCTGTCTG 57.845 50.000 0.00 0.00 0.00 3.51
6996 7059 0.319900 TTGCTTCTCGTCCTGTCTGC 60.320 55.000 0.00 0.00 0.00 4.26
6997 7060 1.181741 TGCTTCTCGTCCTGTCTGCT 61.182 55.000 0.00 0.00 0.00 4.24
6998 7061 0.457681 GCTTCTCGTCCTGTCTGCTC 60.458 60.000 0.00 0.00 0.00 4.26
6999 7062 0.172352 CTTCTCGTCCTGTCTGCTCC 59.828 60.000 0.00 0.00 0.00 4.70
7000 7063 0.251386 TTCTCGTCCTGTCTGCTCCT 60.251 55.000 0.00 0.00 0.00 3.69
7001 7064 0.618981 TCTCGTCCTGTCTGCTCCTA 59.381 55.000 0.00 0.00 0.00 2.94
7002 7065 1.021202 CTCGTCCTGTCTGCTCCTAG 58.979 60.000 0.00 0.00 0.00 3.02
7003 7066 0.618981 TCGTCCTGTCTGCTCCTAGA 59.381 55.000 0.00 0.00 0.00 2.43
7004 7067 1.213182 TCGTCCTGTCTGCTCCTAGAT 59.787 52.381 0.00 0.00 0.00 1.98
7005 7068 2.028130 CGTCCTGTCTGCTCCTAGATT 58.972 52.381 0.00 0.00 0.00 2.40
7006 7069 2.034053 CGTCCTGTCTGCTCCTAGATTC 59.966 54.545 0.00 0.00 0.00 2.52
7007 7070 3.027412 GTCCTGTCTGCTCCTAGATTCA 58.973 50.000 0.00 0.00 0.00 2.57
7008 7071 3.449018 GTCCTGTCTGCTCCTAGATTCAA 59.551 47.826 0.00 0.00 0.00 2.69
7009 7072 3.449018 TCCTGTCTGCTCCTAGATTCAAC 59.551 47.826 0.00 0.00 0.00 3.18
7010 7073 3.196469 CCTGTCTGCTCCTAGATTCAACA 59.804 47.826 0.00 0.00 0.00 3.33
7011 7074 4.431809 CTGTCTGCTCCTAGATTCAACAG 58.568 47.826 0.00 0.00 0.00 3.16
7012 7075 3.196469 TGTCTGCTCCTAGATTCAACAGG 59.804 47.826 0.00 0.00 0.00 4.00
7013 7076 3.196685 GTCTGCTCCTAGATTCAACAGGT 59.803 47.826 0.00 0.00 0.00 4.00
7014 7077 3.449018 TCTGCTCCTAGATTCAACAGGTC 59.551 47.826 0.00 0.00 0.00 3.85
7015 7078 3.445008 TGCTCCTAGATTCAACAGGTCT 58.555 45.455 0.00 0.00 0.00 3.85
7016 7079 3.840666 TGCTCCTAGATTCAACAGGTCTT 59.159 43.478 0.00 0.00 0.00 3.01
7017 7080 4.081420 TGCTCCTAGATTCAACAGGTCTTC 60.081 45.833 0.00 0.00 0.00 2.87
7018 7081 4.682050 GCTCCTAGATTCAACAGGTCTTCC 60.682 50.000 0.00 0.00 0.00 3.46
7019 7082 4.425772 TCCTAGATTCAACAGGTCTTCCA 58.574 43.478 0.00 0.00 35.89 3.53
7020 7083 4.223032 TCCTAGATTCAACAGGTCTTCCAC 59.777 45.833 0.00 0.00 35.89 4.02
7021 7084 4.020218 CCTAGATTCAACAGGTCTTCCACA 60.020 45.833 0.00 0.00 35.89 4.17
7022 7085 3.744660 AGATTCAACAGGTCTTCCACAC 58.255 45.455 0.00 0.00 35.89 3.82
7023 7086 3.136443 AGATTCAACAGGTCTTCCACACA 59.864 43.478 0.00 0.00 35.89 3.72
7024 7087 3.358111 TTCAACAGGTCTTCCACACAA 57.642 42.857 0.00 0.00 35.89 3.33
7025 7088 2.639065 TCAACAGGTCTTCCACACAAC 58.361 47.619 0.00 0.00 35.89 3.32
7026 7089 1.330521 CAACAGGTCTTCCACACAACG 59.669 52.381 0.00 0.00 35.89 4.10
7027 7090 0.539986 ACAGGTCTTCCACACAACGT 59.460 50.000 0.00 0.00 35.89 3.99
7028 7091 1.758280 ACAGGTCTTCCACACAACGTA 59.242 47.619 0.00 0.00 35.89 3.57
7029 7092 2.367567 ACAGGTCTTCCACACAACGTAT 59.632 45.455 0.00 0.00 35.89 3.06
7030 7093 3.181458 ACAGGTCTTCCACACAACGTATT 60.181 43.478 0.00 0.00 35.89 1.89
7031 7094 3.813166 CAGGTCTTCCACACAACGTATTT 59.187 43.478 0.00 0.00 35.89 1.40
7032 7095 4.274950 CAGGTCTTCCACACAACGTATTTT 59.725 41.667 0.00 0.00 35.89 1.82
7033 7096 4.514066 AGGTCTTCCACACAACGTATTTTC 59.486 41.667 0.00 0.00 35.89 2.29
7034 7097 4.273969 GGTCTTCCACACAACGTATTTTCA 59.726 41.667 0.00 0.00 0.00 2.69
7035 7098 5.220892 GGTCTTCCACACAACGTATTTTCAA 60.221 40.000 0.00 0.00 0.00 2.69
7036 7099 6.259638 GTCTTCCACACAACGTATTTTCAAA 58.740 36.000 0.00 0.00 0.00 2.69
7037 7100 6.915843 GTCTTCCACACAACGTATTTTCAAAT 59.084 34.615 0.00 0.00 0.00 2.32
7038 7101 7.112984 GTCTTCCACACAACGTATTTTCAAATC 59.887 37.037 0.00 0.00 0.00 2.17
7039 7102 6.627395 TCCACACAACGTATTTTCAAATCT 57.373 33.333 0.00 0.00 0.00 2.40
7040 7103 7.033530 TCCACACAACGTATTTTCAAATCTT 57.966 32.000 0.00 0.00 0.00 2.40
7041 7104 8.155821 TCCACACAACGTATTTTCAAATCTTA 57.844 30.769 0.00 0.00 0.00 2.10
7042 7105 8.622157 TCCACACAACGTATTTTCAAATCTTAA 58.378 29.630 0.00 0.00 0.00 1.85
7043 7106 9.239002 CCACACAACGTATTTTCAAATCTTAAA 57.761 29.630 0.00 0.00 0.00 1.52
7230 7293 5.933617 TCTCTTAACATGCAGCCATCTAAT 58.066 37.500 0.00 0.00 0.00 1.73
7235 7298 3.211865 ACATGCAGCCATCTAATCACAG 58.788 45.455 0.00 0.00 0.00 3.66
7259 7322 0.625316 TATGCCATGTCAGCAACCCT 59.375 50.000 0.00 0.00 44.83 4.34
7281 7348 5.042463 TGTTTTGATGGTCAGTAGTTCCA 57.958 39.130 0.00 0.00 35.64 3.53
7282 7349 4.819630 TGTTTTGATGGTCAGTAGTTCCAC 59.180 41.667 0.00 0.00 33.91 4.02
7307 7374 1.135888 GCCGTAACAACCGATCAAACC 60.136 52.381 0.00 0.00 0.00 3.27
7308 7375 1.465777 CCGTAACAACCGATCAAACCC 59.534 52.381 0.00 0.00 0.00 4.11
7309 7376 2.144730 CGTAACAACCGATCAAACCCA 58.855 47.619 0.00 0.00 0.00 4.51
7310 7377 2.158841 CGTAACAACCGATCAAACCCAG 59.841 50.000 0.00 0.00 0.00 4.45
7347 7418 6.641314 CCACGTCTCACTAATCGCTAATTATT 59.359 38.462 0.00 0.00 0.00 1.40
7412 7484 2.159653 AGTCGATTCATTTTCTGCACGC 60.160 45.455 0.00 0.00 0.00 5.34
7439 7511 2.487762 CGAAGCTAGGATTTTTGCACCA 59.512 45.455 0.00 0.00 0.00 4.17
7491 7648 0.322187 ATGTCCAACGGGCCAGTTAC 60.322 55.000 21.31 16.63 32.35 2.50
7570 7755 7.132213 CCCATGTAACTAAACGCATCTAATTG 58.868 38.462 0.00 0.00 0.00 2.32
7571 7756 7.132213 CCATGTAACTAAACGCATCTAATTGG 58.868 38.462 0.00 0.00 0.00 3.16
7623 7818 0.466739 TCCGGCTTATCGCAGTAGGA 60.467 55.000 0.00 0.00 41.67 2.94
7657 7863 2.408704 CGTCGTTTTGTCTTCTGCTAGG 59.591 50.000 0.00 0.00 0.00 3.02
7694 7900 1.664873 CCCATGAAACGGCAGCAAA 59.335 52.632 0.00 0.00 0.00 3.68
7695 7901 0.247185 CCCATGAAACGGCAGCAAAT 59.753 50.000 0.00 0.00 0.00 2.32
7696 7902 1.476085 CCCATGAAACGGCAGCAAATA 59.524 47.619 0.00 0.00 0.00 1.40
7697 7903 2.101249 CCCATGAAACGGCAGCAAATAT 59.899 45.455 0.00 0.00 0.00 1.28
7698 7904 3.374745 CCATGAAACGGCAGCAAATATC 58.625 45.455 0.00 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.661437 GCCAACATATATCATCCTAGACAAACA 59.339 37.037 0.00 0.00 0.00 2.83
340 341 7.394641 TCTCTCTCTCTAACACACACACATATT 59.605 37.037 0.00 0.00 0.00 1.28
526 534 1.433837 GAAGAACACCCGTGCGTTGT 61.434 55.000 0.00 0.00 0.00 3.32
551 559 7.064016 GTGCATGTTTCACCAAGTTTTTAGAAA 59.936 33.333 0.00 0.00 0.00 2.52
553 561 6.039616 GTGCATGTTTCACCAAGTTTTTAGA 58.960 36.000 0.00 0.00 0.00 2.10
557 565 4.432712 GAGTGCATGTTTCACCAAGTTTT 58.567 39.130 0.00 0.00 35.14 2.43
558 566 3.489059 CGAGTGCATGTTTCACCAAGTTT 60.489 43.478 0.00 0.00 35.14 2.66
559 567 2.033299 CGAGTGCATGTTTCACCAAGTT 59.967 45.455 0.00 0.00 35.14 2.66
560 568 1.603802 CGAGTGCATGTTTCACCAAGT 59.396 47.619 0.00 0.00 35.14 3.16
561 569 1.603802 ACGAGTGCATGTTTCACCAAG 59.396 47.619 0.00 0.00 35.14 3.61
562 570 1.674359 ACGAGTGCATGTTTCACCAA 58.326 45.000 0.00 0.00 35.14 3.67
563 571 1.674359 AACGAGTGCATGTTTCACCA 58.326 45.000 0.00 0.00 35.14 4.17
564 572 2.032799 TCAAACGAGTGCATGTTTCACC 59.967 45.455 10.55 0.00 36.22 4.02
565 573 3.035942 GTCAAACGAGTGCATGTTTCAC 58.964 45.455 10.55 6.19 36.22 3.18
566 574 2.942376 AGTCAAACGAGTGCATGTTTCA 59.058 40.909 10.55 0.00 36.22 2.69
567 575 3.609103 AGTCAAACGAGTGCATGTTTC 57.391 42.857 10.55 3.42 36.22 2.78
568 576 4.370364 AAAGTCAAACGAGTGCATGTTT 57.630 36.364 8.36 8.36 38.76 2.83
569 577 4.104776 CAAAAGTCAAACGAGTGCATGTT 58.895 39.130 0.00 0.00 0.00 2.71
570 578 3.376859 TCAAAAGTCAAACGAGTGCATGT 59.623 39.130 0.00 0.00 0.00 3.21
571 579 3.951306 TCAAAAGTCAAACGAGTGCATG 58.049 40.909 0.00 0.00 0.00 4.06
572 580 4.630894 TTCAAAAGTCAAACGAGTGCAT 57.369 36.364 0.00 0.00 0.00 3.96
573 581 4.427096 TTTCAAAAGTCAAACGAGTGCA 57.573 36.364 0.00 0.00 0.00 4.57
574 582 5.755330 TTTTTCAAAAGTCAAACGAGTGC 57.245 34.783 0.00 0.00 0.00 4.40
595 603 8.909923 CCATCCGTTCCTTTATATAAGGTTTTT 58.090 33.333 4.13 0.00 38.55 1.94
596 604 8.276477 TCCATCCGTTCCTTTATATAAGGTTTT 58.724 33.333 4.13 0.00 38.55 2.43
597 605 7.808218 TCCATCCGTTCCTTTATATAAGGTTT 58.192 34.615 4.13 0.00 38.55 3.27
598 606 7.072076 ACTCCATCCGTTCCTTTATATAAGGTT 59.928 37.037 4.13 0.00 38.55 3.50
599 607 6.557633 ACTCCATCCGTTCCTTTATATAAGGT 59.442 38.462 4.13 0.00 38.55 3.50
600 608 7.005709 ACTCCATCCGTTCCTTTATATAAGG 57.994 40.000 0.00 0.00 38.78 2.69
604 612 8.656806 TGAAATACTCCATCCGTTCCTTTATAT 58.343 33.333 0.00 0.00 0.00 0.86
605 613 7.929785 GTGAAATACTCCATCCGTTCCTTTATA 59.070 37.037 0.00 0.00 0.00 0.98
606 614 6.766467 GTGAAATACTCCATCCGTTCCTTTAT 59.234 38.462 0.00 0.00 0.00 1.40
607 615 6.110707 GTGAAATACTCCATCCGTTCCTTTA 58.889 40.000 0.00 0.00 0.00 1.85
608 616 4.941873 GTGAAATACTCCATCCGTTCCTTT 59.058 41.667 0.00 0.00 0.00 3.11
609 617 4.019681 TGTGAAATACTCCATCCGTTCCTT 60.020 41.667 0.00 0.00 0.00 3.36
610 618 3.517901 TGTGAAATACTCCATCCGTTCCT 59.482 43.478 0.00 0.00 0.00 3.36
611 619 3.869065 TGTGAAATACTCCATCCGTTCC 58.131 45.455 0.00 0.00 0.00 3.62
612 620 5.873179 TTTGTGAAATACTCCATCCGTTC 57.127 39.130 0.00 0.00 0.00 3.95
613 621 6.642707 TTTTTGTGAAATACTCCATCCGTT 57.357 33.333 0.00 0.00 0.00 4.44
614 622 6.834168 ATTTTTGTGAAATACTCCATCCGT 57.166 33.333 0.00 0.00 0.00 4.69
615 623 9.632807 TTTTATTTTTGTGAAATACTCCATCCG 57.367 29.630 0.00 0.00 0.00 4.18
657 665 8.450964 CGGCTTTCTGTTTTATTCTTATCTTCA 58.549 33.333 0.00 0.00 0.00 3.02
658 666 8.451748 ACGGCTTTCTGTTTTATTCTTATCTTC 58.548 33.333 0.00 0.00 0.00 2.87
659 667 8.336801 ACGGCTTTCTGTTTTATTCTTATCTT 57.663 30.769 0.00 0.00 0.00 2.40
660 668 7.923414 ACGGCTTTCTGTTTTATTCTTATCT 57.077 32.000 0.00 0.00 0.00 1.98
746 762 6.309980 TGTTTATTTTTCACGCATATTGGCAG 59.690 34.615 0.00 0.00 0.00 4.85
747 763 6.159293 TGTTTATTTTTCACGCATATTGGCA 58.841 32.000 0.00 0.00 0.00 4.92
748 764 6.529829 TCTGTTTATTTTTCACGCATATTGGC 59.470 34.615 0.00 0.00 0.00 4.52
749 765 8.459521 TTCTGTTTATTTTTCACGCATATTGG 57.540 30.769 0.00 0.00 0.00 3.16
750 766 9.726034 GTTTCTGTTTATTTTTCACGCATATTG 57.274 29.630 0.00 0.00 0.00 1.90
751 767 8.921670 GGTTTCTGTTTATTTTTCACGCATATT 58.078 29.630 0.00 0.00 0.00 1.28
753 769 7.426410 TGGTTTCTGTTTATTTTTCACGCATA 58.574 30.769 0.00 0.00 0.00 3.14
755 771 5.651530 TGGTTTCTGTTTATTTTTCACGCA 58.348 33.333 0.00 0.00 0.00 5.24
756 772 5.974751 TCTGGTTTCTGTTTATTTTTCACGC 59.025 36.000 0.00 0.00 0.00 5.34
759 775 9.157104 GGTTTTCTGGTTTCTGTTTATTTTTCA 57.843 29.630 0.00 0.00 0.00 2.69
760 776 8.609176 GGGTTTTCTGGTTTCTGTTTATTTTTC 58.391 33.333 0.00 0.00 0.00 2.29
761 777 7.279090 CGGGTTTTCTGGTTTCTGTTTATTTTT 59.721 33.333 0.00 0.00 0.00 1.94
762 778 6.759356 CGGGTTTTCTGGTTTCTGTTTATTTT 59.241 34.615 0.00 0.00 0.00 1.82
763 779 6.277605 CGGGTTTTCTGGTTTCTGTTTATTT 58.722 36.000 0.00 0.00 0.00 1.40
764 780 5.737922 GCGGGTTTTCTGGTTTCTGTTTATT 60.738 40.000 0.00 0.00 0.00 1.40
765 781 4.261867 GCGGGTTTTCTGGTTTCTGTTTAT 60.262 41.667 0.00 0.00 0.00 1.40
766 782 3.067040 GCGGGTTTTCTGGTTTCTGTTTA 59.933 43.478 0.00 0.00 0.00 2.01
767 783 2.159156 GCGGGTTTTCTGGTTTCTGTTT 60.159 45.455 0.00 0.00 0.00 2.83
787 803 3.279116 TGTGTGGCTGTTCGCTGC 61.279 61.111 0.00 0.00 40.71 5.25
788 804 2.179547 TGTGTGTGGCTGTTCGCTG 61.180 57.895 0.00 0.00 39.13 5.18
802 818 1.069049 GCCCATTTTCTGCTTGTGTGT 59.931 47.619 0.00 0.00 0.00 3.72
805 821 0.680618 TGGCCCATTTTCTGCTTGTG 59.319 50.000 0.00 0.00 0.00 3.33
806 822 0.971386 CTGGCCCATTTTCTGCTTGT 59.029 50.000 0.00 0.00 0.00 3.16
807 823 0.248289 CCTGGCCCATTTTCTGCTTG 59.752 55.000 0.00 0.00 0.00 4.01
883 899 1.388837 GGAGGAGAGAAGAGGGCGAC 61.389 65.000 0.00 0.00 0.00 5.19
886 902 0.759060 GGAGGAGGAGAGAAGAGGGC 60.759 65.000 0.00 0.00 0.00 5.19
967 983 4.221422 TGGGGTGCGCGCTCTATC 62.221 66.667 33.29 20.24 0.00 2.08
1386 1402 5.050490 CCGCTAAATCAGAAGCTAAGCTAA 58.950 41.667 0.00 0.00 38.25 3.09
1387 1403 4.099573 ACCGCTAAATCAGAAGCTAAGCTA 59.900 41.667 0.00 0.00 38.25 3.32
1388 1404 3.118592 ACCGCTAAATCAGAAGCTAAGCT 60.119 43.478 0.00 0.00 42.56 3.74
1389 1405 3.198872 ACCGCTAAATCAGAAGCTAAGC 58.801 45.455 0.00 0.00 36.56 3.09
1390 1406 6.757010 TCTTTACCGCTAAATCAGAAGCTAAG 59.243 38.462 0.00 0.00 36.56 2.18
1435 1451 7.770366 TCTTCTACAATACACACCAAGAGTA 57.230 36.000 0.00 0.00 0.00 2.59
1448 1464 5.584649 CACCTCGCCATTTTCTTCTACAATA 59.415 40.000 0.00 0.00 0.00 1.90
1490 1506 6.919721 ACGCATGTAATTTAACACCAAGATT 58.080 32.000 0.00 0.00 30.75 2.40
1505 1521 5.048364 ACTTTGCTTCCAAATACGCATGTAA 60.048 36.000 0.00 0.00 39.98 2.41
1554 1570 5.063880 GGCACATCCTCGTCCTAATAAAAT 58.936 41.667 0.00 0.00 0.00 1.82
1555 1571 4.163458 AGGCACATCCTCGTCCTAATAAAA 59.837 41.667 0.00 0.00 43.20 1.52
1556 1572 3.709653 AGGCACATCCTCGTCCTAATAAA 59.290 43.478 0.00 0.00 43.20 1.40
1557 1573 3.305720 AGGCACATCCTCGTCCTAATAA 58.694 45.455 0.00 0.00 43.20 1.40
1558 1574 2.958818 AGGCACATCCTCGTCCTAATA 58.041 47.619 0.00 0.00 43.20 0.98
1559 1575 1.794714 AGGCACATCCTCGTCCTAAT 58.205 50.000 0.00 0.00 43.20 1.73
1621 1637 5.153675 TCTTATCTGCTTCTCCTCATCCAT 58.846 41.667 0.00 0.00 0.00 3.41
1626 1642 6.266558 GGAGTATTCTTATCTGCTTCTCCTCA 59.733 42.308 0.00 0.00 36.84 3.86
1712 1728 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
1713 1729 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
1714 1730 5.127356 GTCTTATATTATGGGACGGAGGGAG 59.873 48.000 0.00 0.00 0.00 4.30
1715 1731 5.021458 GTCTTATATTATGGGACGGAGGGA 58.979 45.833 0.00 0.00 0.00 4.20
1716 1732 4.142227 CGTCTTATATTATGGGACGGAGGG 60.142 50.000 17.59 0.46 43.69 4.30
1717 1733 4.995124 CGTCTTATATTATGGGACGGAGG 58.005 47.826 17.59 0.00 43.69 4.30
1722 1738 8.762426 GTCAAAGAACGTCTTATATTATGGGAC 58.238 37.037 0.00 0.00 35.27 4.46
1723 1739 8.479689 TGTCAAAGAACGTCTTATATTATGGGA 58.520 33.333 0.00 0.00 35.27 4.37
1724 1740 8.657074 TGTCAAAGAACGTCTTATATTATGGG 57.343 34.615 0.00 0.00 35.27 4.00
1725 1741 9.529325 TCTGTCAAAGAACGTCTTATATTATGG 57.471 33.333 0.00 0.00 35.27 2.74
1728 1744 9.350357 GTGTCTGTCAAAGAACGTCTTATATTA 57.650 33.333 0.00 0.00 35.27 0.98
1729 1745 8.088981 AGTGTCTGTCAAAGAACGTCTTATATT 58.911 33.333 0.00 0.00 35.27 1.28
1730 1746 7.603651 AGTGTCTGTCAAAGAACGTCTTATAT 58.396 34.615 0.00 0.00 35.27 0.86
1731 1747 6.978338 AGTGTCTGTCAAAGAACGTCTTATA 58.022 36.000 0.00 0.00 35.27 0.98
1732 1748 5.844004 AGTGTCTGTCAAAGAACGTCTTAT 58.156 37.500 0.00 0.00 35.27 1.73
1733 1749 5.258456 AGTGTCTGTCAAAGAACGTCTTA 57.742 39.130 0.00 0.00 35.27 2.10
1734 1750 4.124851 AGTGTCTGTCAAAGAACGTCTT 57.875 40.909 0.00 0.00 38.59 3.01
1735 1751 3.802948 AGTGTCTGTCAAAGAACGTCT 57.197 42.857 0.00 0.00 36.40 4.18
1736 1752 4.441415 CACTAGTGTCTGTCAAAGAACGTC 59.559 45.833 15.06 0.00 36.40 4.34
1737 1753 4.142227 ACACTAGTGTCTGTCAAAGAACGT 60.142 41.667 22.95 0.00 40.24 3.99
1738 1754 4.360563 ACACTAGTGTCTGTCAAAGAACG 58.639 43.478 22.95 0.00 40.24 3.95
1764 1780 3.506067 CGTCCCCTAATGCAAGACTTTTT 59.494 43.478 0.00 0.00 0.00 1.94
1765 1781 3.081804 CGTCCCCTAATGCAAGACTTTT 58.918 45.455 0.00 0.00 0.00 2.27
1766 1782 2.618045 CCGTCCCCTAATGCAAGACTTT 60.618 50.000 0.00 0.00 0.00 2.66
1767 1783 1.065418 CCGTCCCCTAATGCAAGACTT 60.065 52.381 0.00 0.00 0.00 3.01
1768 1784 0.541863 CCGTCCCCTAATGCAAGACT 59.458 55.000 0.00 0.00 0.00 3.24
1769 1785 0.539986 TCCGTCCCCTAATGCAAGAC 59.460 55.000 0.00 0.00 0.00 3.01
1770 1786 0.830648 CTCCGTCCCCTAATGCAAGA 59.169 55.000 0.00 0.00 0.00 3.02
1771 1787 0.179045 CCTCCGTCCCCTAATGCAAG 60.179 60.000 0.00 0.00 0.00 4.01
1772 1788 1.632018 CCCTCCGTCCCCTAATGCAA 61.632 60.000 0.00 0.00 0.00 4.08
1773 1789 2.070039 CCCTCCGTCCCCTAATGCA 61.070 63.158 0.00 0.00 0.00 3.96
1774 1790 1.759459 CTCCCTCCGTCCCCTAATGC 61.759 65.000 0.00 0.00 0.00 3.56
1775 1791 0.398664 ACTCCCTCCGTCCCCTAATG 60.399 60.000 0.00 0.00 0.00 1.90
1776 1792 1.147399 CTACTCCCTCCGTCCCCTAAT 59.853 57.143 0.00 0.00 0.00 1.73
1777 1793 0.554792 CTACTCCCTCCGTCCCCTAA 59.445 60.000 0.00 0.00 0.00 2.69
1778 1794 0.327867 TCTACTCCCTCCGTCCCCTA 60.328 60.000 0.00 0.00 0.00 3.53
1779 1795 1.000041 ATCTACTCCCTCCGTCCCCT 61.000 60.000 0.00 0.00 0.00 4.79
1780 1796 0.776176 TATCTACTCCCTCCGTCCCC 59.224 60.000 0.00 0.00 0.00 4.81
1781 1797 1.424684 ACTATCTACTCCCTCCGTCCC 59.575 57.143 0.00 0.00 0.00 4.46
1782 1798 2.955342 ACTATCTACTCCCTCCGTCC 57.045 55.000 0.00 0.00 0.00 4.79
1783 1799 6.897706 ATTTAACTATCTACTCCCTCCGTC 57.102 41.667 0.00 0.00 0.00 4.79
1784 1800 7.525165 AGTATTTAACTATCTACTCCCTCCGT 58.475 38.462 0.00 0.00 36.36 4.69
1785 1801 7.999450 AGTATTTAACTATCTACTCCCTCCG 57.001 40.000 0.00 0.00 36.36 4.63
1830 1846 5.144100 AGTGACCCAATTTTGTTCCATGTA 58.856 37.500 0.00 0.00 0.00 2.29
1943 1960 2.665165 AGGACCAAACTTTCATGCACA 58.335 42.857 0.00 0.00 0.00 4.57
1944 1961 3.181476 ACAAGGACCAAACTTTCATGCAC 60.181 43.478 0.00 0.00 0.00 4.57
1984 2001 9.974980 ACACAAAACGGTTAAATCTTTATCATT 57.025 25.926 0.00 0.00 0.00 2.57
2015 2032 9.408648 CCTTCTTCTTCCTATTGCCTATTTAAA 57.591 33.333 0.00 0.00 0.00 1.52
2421 2438 5.643379 TCTTGTGTGCTTCCATAATTTCC 57.357 39.130 0.00 0.00 0.00 3.13
2614 2631 6.947733 ACCTCCATCTACACAAATTCATGAAA 59.052 34.615 13.09 0.00 0.00 2.69
2868 2885 8.782137 AGTGGCATATAAATGATAAAAACCCT 57.218 30.769 0.00 0.00 34.84 4.34
2903 2920 6.109156 TCTAATGGCAAAACTGAGTAGTGA 57.891 37.500 0.00 0.00 37.19 3.41
2913 2930 8.565416 AGTAGTTGTAACTTCTAATGGCAAAAC 58.435 33.333 2.20 0.00 40.37 2.43
2925 2942 7.422399 TGGCATTTTTGAGTAGTTGTAACTTC 58.578 34.615 2.20 0.00 40.37 3.01
2928 2945 6.523201 CGATGGCATTTTTGAGTAGTTGTAAC 59.477 38.462 0.00 0.00 0.00 2.50
2937 2954 3.355378 TGGATCGATGGCATTTTTGAGT 58.645 40.909 0.54 0.00 0.00 3.41
2940 2957 4.037089 TCTCATGGATCGATGGCATTTTTG 59.963 41.667 16.58 0.00 0.00 2.44
2947 2964 1.085091 GCATCTCATGGATCGATGGC 58.915 55.000 16.58 8.95 36.07 4.40
2954 2971 3.292492 TTGAGCAAGCATCTCATGGAT 57.708 42.857 0.00 0.00 39.96 3.41
2960 2977 2.928116 GGCATTTTTGAGCAAGCATCTC 59.072 45.455 0.00 0.00 0.00 2.75
2966 2983 5.472148 TGTCTAATGGCATTTTTGAGCAAG 58.528 37.500 19.21 7.02 0.00 4.01
2967 2984 5.465532 TGTCTAATGGCATTTTTGAGCAA 57.534 34.783 19.21 0.00 0.00 3.91
2988 3005 4.032331 GGGTTTGACGTGAAAACAACAATG 59.968 41.667 17.29 0.00 38.91 2.82
2995 3012 2.547913 AACGGGTTTGACGTGAAAAC 57.452 45.000 7.02 7.02 44.83 2.43
2998 3015 1.939255 GGTTAACGGGTTTGACGTGAA 59.061 47.619 0.00 0.00 44.83 3.18
3002 3019 1.874872 ACATGGTTAACGGGTTTGACG 59.125 47.619 0.00 0.00 37.36 4.35
3015 3032 9.816354 GGCTTATTTTTGTCATATAACATGGTT 57.184 29.630 0.00 0.00 0.00 3.67
3025 3042 6.826741 GTGGGTCTAGGCTTATTTTTGTCATA 59.173 38.462 0.00 0.00 0.00 2.15
3036 3053 2.766263 CAGACATGTGGGTCTAGGCTTA 59.234 50.000 1.15 0.00 46.05 3.09
3037 3054 1.556911 CAGACATGTGGGTCTAGGCTT 59.443 52.381 1.15 0.00 46.05 4.35
3039 3056 0.905357 ACAGACATGTGGGTCTAGGC 59.095 55.000 1.15 0.00 46.05 3.93
3052 3070 5.770162 TCATTGTGAGTAGAGAGAACAGACA 59.230 40.000 0.00 0.00 0.00 3.41
3056 3074 8.246871 CACTTATCATTGTGAGTAGAGAGAACA 58.753 37.037 0.00 0.00 36.38 3.18
3058 3076 8.354711 ACACTTATCATTGTGAGTAGAGAGAA 57.645 34.615 0.00 0.00 37.59 2.87
3061 3079 7.363880 GGGAACACTTATCATTGTGAGTAGAGA 60.364 40.741 0.00 0.00 37.59 3.10
3084 3103 2.370849 GGTTACTCTTGACAAGTGGGGA 59.629 50.000 18.71 4.77 0.00 4.81
3087 3108 3.251004 GCTTGGTTACTCTTGACAAGTGG 59.749 47.826 18.71 13.39 40.35 4.00
3121 3142 6.382925 TCCCAACAGGGTTTTTATTTTCCTA 58.617 36.000 0.00 0.00 43.53 2.94
3124 3145 6.764379 TGATCCCAACAGGGTTTTTATTTTC 58.236 36.000 0.00 0.00 43.53 2.29
3132 3153 3.245264 CCTACTTGATCCCAACAGGGTTT 60.245 47.826 0.00 0.00 43.53 3.27
3136 3157 1.408822 GGCCTACTTGATCCCAACAGG 60.409 57.143 0.00 0.00 34.66 4.00
3152 3173 4.724798 TCACTATAATAAAGTGTGGGGCCT 59.275 41.667 0.84 0.00 43.88 5.19
3155 3176 9.090103 TCTATCTCACTATAATAAAGTGTGGGG 57.910 37.037 3.40 0.00 43.88 4.96
3169 3190 4.263905 CCAGCTCTCCCTCTATCTCACTAT 60.264 50.000 0.00 0.00 0.00 2.12
3180 3201 0.747283 CAACATGCCAGCTCTCCCTC 60.747 60.000 0.00 0.00 0.00 4.30
3191 3212 3.508845 ATACCTATGGACCAACATGCC 57.491 47.619 0.00 0.00 32.39 4.40
3214 3235 6.597672 TCTCTTTTGCCATGTTATAACGACAT 59.402 34.615 10.92 0.00 38.21 3.06
3219 3240 9.294030 CTCAAATCTCTTTTGCCATGTTATAAC 57.706 33.333 8.75 8.75 43.68 1.89
3246 3267 5.072741 GCCACTGGATACCATTATTGTGAT 58.927 41.667 0.00 0.00 30.82 3.06
3248 3269 4.206375 TGCCACTGGATACCATTATTGTG 58.794 43.478 0.00 0.00 30.82 3.33
3252 3273 6.135454 TCAAAATGCCACTGGATACCATTAT 58.865 36.000 0.00 0.00 30.82 1.28
3257 3278 2.099756 GCTCAAAATGCCACTGGATACC 59.900 50.000 0.00 0.00 0.00 2.73
3260 3281 1.927487 TGCTCAAAATGCCACTGGAT 58.073 45.000 0.00 0.00 0.00 3.41
3275 3296 1.321743 CGCTTCGTTAGACACATGCTC 59.678 52.381 0.00 0.00 0.00 4.26
3282 3304 0.245266 TGCCATCGCTTCGTTAGACA 59.755 50.000 0.00 0.00 35.36 3.41
3284 3306 2.309528 AATGCCATCGCTTCGTTAGA 57.690 45.000 0.00 0.00 35.36 2.10
3289 3311 2.179589 CTCAAAAATGCCATCGCTTCG 58.820 47.619 0.00 0.00 35.36 3.79
3294 3316 0.171007 ACCGCTCAAAAATGCCATCG 59.829 50.000 0.00 0.00 0.00 3.84
3311 3333 4.864704 TTTGCCACTAGGAATTTCAACC 57.135 40.909 0.00 0.00 36.89 3.77
3315 3337 5.241728 ACTCAGTTTTGCCACTAGGAATTTC 59.758 40.000 0.00 0.00 36.89 2.17
3349 3371 4.909696 TTATCATTTATGCCACCGGTTG 57.090 40.909 2.97 1.36 0.00 3.77
3354 3376 5.983540 TGGGTTTTTATCATTTATGCCACC 58.016 37.500 0.00 0.00 0.00 4.61
3363 3385 9.056799 AGGGAATTGTATTGGGTTTTTATCATT 57.943 29.630 0.00 0.00 0.00 2.57
3855 3881 3.003480 ACGCTCCTGCAGATAAGAAAAC 58.997 45.455 17.39 0.00 39.64 2.43
3910 3936 6.662414 TTCTTCATAATCTAGCCGTGTTTG 57.338 37.500 0.00 0.00 0.00 2.93
4302 4328 5.949952 TCTAGTACCATCAAAGCTCTACACA 59.050 40.000 0.00 0.00 0.00 3.72
4303 4329 6.452494 TCTAGTACCATCAAAGCTCTACAC 57.548 41.667 0.00 0.00 0.00 2.90
4829 4856 3.604582 CAGGTTCTTCAGGTTCAGGATC 58.395 50.000 0.00 0.00 0.00 3.36
5005 5032 8.028938 ACATATTTTACCTTCTTGTCAACATGC 58.971 33.333 0.00 0.00 0.00 4.06
5307 5334 5.163622 GGATCACTCCACACAACCATTAATG 60.164 44.000 8.58 8.58 41.64 1.90
5486 5514 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
5487 5515 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
5569 5597 6.859508 CGGATGTATGTAGACGTATTTTAGCA 59.140 38.462 0.00 0.00 0.00 3.49
5829 5866 4.331717 GTGGGTTGTCGACAATTATAGTGG 59.668 45.833 31.81 0.00 38.24 4.00
5956 5993 3.826729 TCATGACAGATCTATACCCGTGG 59.173 47.826 0.00 0.00 0.00 4.94
5957 5994 5.010112 AGTTCATGACAGATCTATACCCGTG 59.990 44.000 0.00 0.00 0.00 4.94
6010 6047 3.570212 ATACTGCCCGGCCATCCC 61.570 66.667 7.03 0.00 0.00 3.85
6042 6079 1.167033 AAATCCCCAAGTCAACCCCT 58.833 50.000 0.00 0.00 0.00 4.79
6076 6113 7.141758 AGCAAGAATAGTTTGATATCTCCCA 57.858 36.000 3.98 0.00 0.00 4.37
6114 6151 6.663953 AGCTCTACATAAAGAGTCTTGGTGTA 59.336 38.462 20.67 20.67 44.13 2.90
6115 6152 5.482175 AGCTCTACATAAAGAGTCTTGGTGT 59.518 40.000 20.65 20.65 44.13 4.16
6116 6153 5.809562 CAGCTCTACATAAAGAGTCTTGGTG 59.190 44.000 6.06 10.72 44.13 4.17
6117 6154 5.105146 CCAGCTCTACATAAAGAGTCTTGGT 60.105 44.000 6.06 8.09 44.13 3.67
6118 6155 5.105146 ACCAGCTCTACATAAAGAGTCTTGG 60.105 44.000 6.06 1.82 44.13 3.61
6119 6156 5.971763 ACCAGCTCTACATAAAGAGTCTTG 58.028 41.667 6.06 0.00 44.13 3.02
6120 6157 5.955355 AGACCAGCTCTACATAAAGAGTCTT 59.045 40.000 0.00 0.00 44.13 3.01
6121 6158 5.515106 AGACCAGCTCTACATAAAGAGTCT 58.485 41.667 3.08 0.00 44.13 3.24
6122 6159 5.221165 GGAGACCAGCTCTACATAAAGAGTC 60.221 48.000 3.08 0.00 44.13 3.36
6123 6160 4.647399 GGAGACCAGCTCTACATAAAGAGT 59.353 45.833 3.08 0.00 44.13 3.24
6124 6161 4.892934 AGGAGACCAGCTCTACATAAAGAG 59.107 45.833 0.00 0.00 44.92 2.85
6125 6162 4.646945 CAGGAGACCAGCTCTACATAAAGA 59.353 45.833 0.00 0.00 43.43 2.52
6126 6163 4.202202 CCAGGAGACCAGCTCTACATAAAG 60.202 50.000 0.00 0.00 43.43 1.85
6127 6164 3.706594 CCAGGAGACCAGCTCTACATAAA 59.293 47.826 0.00 0.00 43.43 1.40
6128 6165 3.300388 CCAGGAGACCAGCTCTACATAA 58.700 50.000 0.00 0.00 43.43 1.90
6129 6166 2.950781 CCAGGAGACCAGCTCTACATA 58.049 52.381 0.00 0.00 43.43 2.29
6130 6167 1.786937 CCAGGAGACCAGCTCTACAT 58.213 55.000 0.00 0.00 43.43 2.29
6131 6168 0.972983 GCCAGGAGACCAGCTCTACA 60.973 60.000 0.00 0.00 43.43 2.74
6132 6169 1.681486 GGCCAGGAGACCAGCTCTAC 61.681 65.000 0.00 0.00 43.43 2.59
6133 6170 1.381872 GGCCAGGAGACCAGCTCTA 60.382 63.158 0.00 0.00 43.43 2.43
6134 6171 2.686835 GGCCAGGAGACCAGCTCT 60.687 66.667 0.00 0.00 43.43 4.09
6135 6172 2.880629 TAGGGCCAGGAGACCAGCTC 62.881 65.000 6.18 0.00 43.17 4.09
6136 6173 2.477190 TTAGGGCCAGGAGACCAGCT 62.477 60.000 6.18 0.00 0.00 4.24
6382 6439 6.151648 CCACAGCCTCAGATTCTTATTTCAAA 59.848 38.462 0.00 0.00 0.00 2.69
6484 6546 5.355350 ACAGCAATTAGAACCATAGAAGCAC 59.645 40.000 0.00 0.00 0.00 4.40
6635 6697 2.838202 AGAGGCCTTCTTTATGTTCGGA 59.162 45.455 6.77 0.00 29.61 4.55
6774 6836 7.573968 ACTTCTCAAGTGTTTGAAAATAGCT 57.426 32.000 0.00 0.00 42.48 3.32
6878 6941 2.343475 ATATTCCGGCCCTGGTGCAG 62.343 60.000 0.00 5.22 0.00 4.41
6879 6942 2.382770 ATATTCCGGCCCTGGTGCA 61.383 57.895 0.00 0.00 0.00 4.57
6880 6943 1.898574 CATATTCCGGCCCTGGTGC 60.899 63.158 0.00 0.00 0.00 5.01
6881 6944 0.106719 AACATATTCCGGCCCTGGTG 60.107 55.000 0.00 0.00 0.00 4.17
6882 6945 0.629058 AAACATATTCCGGCCCTGGT 59.371 50.000 0.00 0.00 0.00 4.00
6883 6946 1.032014 CAAACATATTCCGGCCCTGG 58.968 55.000 0.00 0.00 0.00 4.45
6884 6947 1.762708 ACAAACATATTCCGGCCCTG 58.237 50.000 0.00 0.00 0.00 4.45
6885 6948 2.422377 GGTACAAACATATTCCGGCCCT 60.422 50.000 0.00 0.00 0.00 5.19
6886 6949 1.951602 GGTACAAACATATTCCGGCCC 59.048 52.381 0.00 0.00 0.00 5.80
6887 6950 2.616842 CTGGTACAAACATATTCCGGCC 59.383 50.000 0.00 0.00 38.70 6.13
6888 6951 2.616842 CCTGGTACAAACATATTCCGGC 59.383 50.000 0.00 0.00 38.70 6.13
6889 6952 3.118186 TCCCTGGTACAAACATATTCCGG 60.118 47.826 0.00 0.00 38.70 5.14
6890 6953 4.145365 TCCCTGGTACAAACATATTCCG 57.855 45.455 0.00 0.00 38.70 4.30
6891 6954 5.506708 ACTTCCCTGGTACAAACATATTCC 58.493 41.667 0.00 0.00 38.70 3.01
6892 6955 5.293569 CGACTTCCCTGGTACAAACATATTC 59.706 44.000 0.00 0.00 38.70 1.75
6893 6956 5.183228 CGACTTCCCTGGTACAAACATATT 58.817 41.667 0.00 0.00 38.70 1.28
6894 6957 4.766375 CGACTTCCCTGGTACAAACATAT 58.234 43.478 0.00 0.00 38.70 1.78
6895 6958 3.618019 GCGACTTCCCTGGTACAAACATA 60.618 47.826 0.00 0.00 38.70 2.29
6896 6959 2.874457 GCGACTTCCCTGGTACAAACAT 60.874 50.000 0.00 0.00 38.70 2.71
6897 6960 1.541670 GCGACTTCCCTGGTACAAACA 60.542 52.381 0.00 0.00 38.70 2.83
6898 6961 1.154197 GCGACTTCCCTGGTACAAAC 58.846 55.000 0.00 0.00 38.70 2.93
6899 6962 0.759959 TGCGACTTCCCTGGTACAAA 59.240 50.000 0.00 0.00 38.70 2.83
6900 6963 0.759959 TTGCGACTTCCCTGGTACAA 59.240 50.000 0.00 0.00 38.70 2.41
6901 6964 0.320374 CTTGCGACTTCCCTGGTACA 59.680 55.000 0.00 0.00 0.00 2.90
6902 6965 0.320697 ACTTGCGACTTCCCTGGTAC 59.679 55.000 0.00 0.00 0.00 3.34
6903 6966 1.053424 AACTTGCGACTTCCCTGGTA 58.947 50.000 0.00 0.00 0.00 3.25
6904 6967 1.002087 CTAACTTGCGACTTCCCTGGT 59.998 52.381 0.00 0.00 0.00 4.00
6905 6968 1.676014 CCTAACTTGCGACTTCCCTGG 60.676 57.143 0.00 0.00 0.00 4.45
6906 6969 1.275291 TCCTAACTTGCGACTTCCCTG 59.725 52.381 0.00 0.00 0.00 4.45
6907 6970 1.640917 TCCTAACTTGCGACTTCCCT 58.359 50.000 0.00 0.00 0.00 4.20
6908 6971 2.693267 ATCCTAACTTGCGACTTCCC 57.307 50.000 0.00 0.00 0.00 3.97
6909 6972 4.113354 CACTATCCTAACTTGCGACTTCC 58.887 47.826 0.00 0.00 0.00 3.46
6910 6973 4.745649 ACACTATCCTAACTTGCGACTTC 58.254 43.478 0.00 0.00 0.00 3.01
6911 6974 4.803098 ACACTATCCTAACTTGCGACTT 57.197 40.909 0.00 0.00 0.00 3.01
6912 6975 4.803098 AACACTATCCTAACTTGCGACT 57.197 40.909 0.00 0.00 0.00 4.18
6913 6976 5.857822 AAAACACTATCCTAACTTGCGAC 57.142 39.130 0.00 0.00 0.00 5.19
6914 6977 5.761234 ACAAAAACACTATCCTAACTTGCGA 59.239 36.000 0.00 0.00 0.00 5.10
6915 6978 5.997385 ACAAAAACACTATCCTAACTTGCG 58.003 37.500 0.00 0.00 0.00 4.85
6916 6979 7.203255 AGACAAAAACACTATCCTAACTTGC 57.797 36.000 0.00 0.00 0.00 4.01
6921 6984 9.802039 ACCAAATAGACAAAAACACTATCCTAA 57.198 29.630 0.00 0.00 0.00 2.69
6923 6986 9.975218 ATACCAAATAGACAAAAACACTATCCT 57.025 29.630 0.00 0.00 0.00 3.24
6958 7021 9.382275 AGAAGCAAATGTGTTTAGAATTTTGTT 57.618 25.926 0.00 0.00 0.00 2.83
6959 7022 8.947055 AGAAGCAAATGTGTTTAGAATTTTGT 57.053 26.923 0.00 0.00 0.00 2.83
6960 7023 8.209869 CGAGAAGCAAATGTGTTTAGAATTTTG 58.790 33.333 0.00 0.00 0.00 2.44
6961 7024 7.920682 ACGAGAAGCAAATGTGTTTAGAATTTT 59.079 29.630 0.00 0.00 0.00 1.82
6962 7025 7.425606 ACGAGAAGCAAATGTGTTTAGAATTT 58.574 30.769 0.00 0.00 0.00 1.82
6963 7026 6.970484 ACGAGAAGCAAATGTGTTTAGAATT 58.030 32.000 0.00 0.00 0.00 2.17
6964 7027 6.348540 GGACGAGAAGCAAATGTGTTTAGAAT 60.349 38.462 0.00 0.00 0.00 2.40
6965 7028 5.049680 GGACGAGAAGCAAATGTGTTTAGAA 60.050 40.000 0.00 0.00 0.00 2.10
6966 7029 4.451096 GGACGAGAAGCAAATGTGTTTAGA 59.549 41.667 0.00 0.00 0.00 2.10
6967 7030 4.452455 AGGACGAGAAGCAAATGTGTTTAG 59.548 41.667 0.00 0.00 0.00 1.85
6968 7031 4.213270 CAGGACGAGAAGCAAATGTGTTTA 59.787 41.667 0.00 0.00 0.00 2.01
6969 7032 3.003689 CAGGACGAGAAGCAAATGTGTTT 59.996 43.478 0.00 0.00 0.00 2.83
6970 7033 2.549754 CAGGACGAGAAGCAAATGTGTT 59.450 45.455 0.00 0.00 0.00 3.32
6971 7034 2.146342 CAGGACGAGAAGCAAATGTGT 58.854 47.619 0.00 0.00 0.00 3.72
6972 7035 2.146342 ACAGGACGAGAAGCAAATGTG 58.854 47.619 0.00 0.00 0.00 3.21
6973 7036 2.037772 AGACAGGACGAGAAGCAAATGT 59.962 45.455 0.00 0.00 0.00 2.71
6974 7037 2.414481 CAGACAGGACGAGAAGCAAATG 59.586 50.000 0.00 0.00 0.00 2.32
6975 7038 2.693069 CAGACAGGACGAGAAGCAAAT 58.307 47.619 0.00 0.00 0.00 2.32
6976 7039 1.873903 GCAGACAGGACGAGAAGCAAA 60.874 52.381 0.00 0.00 0.00 3.68
6977 7040 0.319900 GCAGACAGGACGAGAAGCAA 60.320 55.000 0.00 0.00 0.00 3.91
6978 7041 1.181741 AGCAGACAGGACGAGAAGCA 61.182 55.000 0.00 0.00 0.00 3.91
6979 7042 0.457681 GAGCAGACAGGACGAGAAGC 60.458 60.000 0.00 0.00 0.00 3.86
6980 7043 0.172352 GGAGCAGACAGGACGAGAAG 59.828 60.000 0.00 0.00 0.00 2.85
6981 7044 0.251386 AGGAGCAGACAGGACGAGAA 60.251 55.000 0.00 0.00 0.00 2.87
6982 7045 0.618981 TAGGAGCAGACAGGACGAGA 59.381 55.000 0.00 0.00 0.00 4.04
6983 7046 1.021202 CTAGGAGCAGACAGGACGAG 58.979 60.000 0.00 0.00 0.00 4.18
6984 7047 0.618981 TCTAGGAGCAGACAGGACGA 59.381 55.000 0.00 0.00 0.00 4.20
6985 7048 1.686355 ATCTAGGAGCAGACAGGACG 58.314 55.000 0.00 0.00 0.00 4.79
6986 7049 3.027412 TGAATCTAGGAGCAGACAGGAC 58.973 50.000 0.00 0.00 0.00 3.85
6987 7050 3.388552 TGAATCTAGGAGCAGACAGGA 57.611 47.619 0.00 0.00 0.00 3.86
6988 7051 3.196469 TGTTGAATCTAGGAGCAGACAGG 59.804 47.826 0.00 0.00 0.00 4.00
6989 7052 4.431809 CTGTTGAATCTAGGAGCAGACAG 58.568 47.826 0.00 0.00 0.00 3.51
6990 7053 3.196469 CCTGTTGAATCTAGGAGCAGACA 59.804 47.826 0.00 0.00 33.33 3.41
6991 7054 3.196685 ACCTGTTGAATCTAGGAGCAGAC 59.803 47.826 0.00 0.00 35.55 3.51
6992 7055 3.445008 ACCTGTTGAATCTAGGAGCAGA 58.555 45.455 0.00 0.00 35.55 4.26
6993 7056 3.450457 AGACCTGTTGAATCTAGGAGCAG 59.550 47.826 0.00 0.00 35.55 4.24
6994 7057 3.445008 AGACCTGTTGAATCTAGGAGCA 58.555 45.455 0.00 0.00 35.55 4.26
6995 7058 4.438148 GAAGACCTGTTGAATCTAGGAGC 58.562 47.826 0.00 0.00 35.55 4.70
6996 7059 4.467795 TGGAAGACCTGTTGAATCTAGGAG 59.532 45.833 0.00 0.00 35.55 3.69
6997 7060 4.223032 GTGGAAGACCTGTTGAATCTAGGA 59.777 45.833 0.00 0.00 35.55 2.94
6998 7061 4.020218 TGTGGAAGACCTGTTGAATCTAGG 60.020 45.833 0.00 0.00 37.61 3.02
6999 7062 4.932200 GTGTGGAAGACCTGTTGAATCTAG 59.068 45.833 0.00 0.00 37.04 2.43
7000 7063 4.346709 TGTGTGGAAGACCTGTTGAATCTA 59.653 41.667 0.00 0.00 37.04 1.98
7001 7064 3.136443 TGTGTGGAAGACCTGTTGAATCT 59.864 43.478 0.00 0.00 37.04 2.40
7002 7065 3.476552 TGTGTGGAAGACCTGTTGAATC 58.523 45.455 0.00 0.00 37.04 2.52
7003 7066 3.576078 TGTGTGGAAGACCTGTTGAAT 57.424 42.857 0.00 0.00 37.04 2.57
7004 7067 3.013921 GTTGTGTGGAAGACCTGTTGAA 58.986 45.455 0.00 0.00 37.04 2.69
7005 7068 2.639065 GTTGTGTGGAAGACCTGTTGA 58.361 47.619 0.00 0.00 37.04 3.18
7006 7069 1.330521 CGTTGTGTGGAAGACCTGTTG 59.669 52.381 0.00 0.00 37.04 3.33
7007 7070 1.065709 ACGTTGTGTGGAAGACCTGTT 60.066 47.619 0.00 0.00 37.04 3.16
7008 7071 0.539986 ACGTTGTGTGGAAGACCTGT 59.460 50.000 0.00 0.00 37.04 4.00
7009 7072 2.519377 TACGTTGTGTGGAAGACCTG 57.481 50.000 0.00 0.00 37.04 4.00
7010 7073 3.764237 AATACGTTGTGTGGAAGACCT 57.236 42.857 0.00 0.00 37.04 3.85
7011 7074 4.273969 TGAAAATACGTTGTGTGGAAGACC 59.726 41.667 0.00 0.00 0.00 3.85
7012 7075 5.412526 TGAAAATACGTTGTGTGGAAGAC 57.587 39.130 0.00 0.00 0.00 3.01
7013 7076 6.438259 TTTGAAAATACGTTGTGTGGAAGA 57.562 33.333 0.00 0.00 0.00 2.87
7014 7077 7.138736 AGATTTGAAAATACGTTGTGTGGAAG 58.861 34.615 0.00 0.00 0.00 3.46
7015 7078 7.033530 AGATTTGAAAATACGTTGTGTGGAA 57.966 32.000 0.00 0.00 0.00 3.53
7016 7079 6.627395 AGATTTGAAAATACGTTGTGTGGA 57.373 33.333 0.00 0.00 0.00 4.02
7017 7080 8.789881 TTAAGATTTGAAAATACGTTGTGTGG 57.210 30.769 0.00 0.00 0.00 4.17
7213 7276 3.623703 TGTGATTAGATGGCTGCATGTT 58.376 40.909 0.50 0.00 0.00 2.71
7259 7322 4.819630 GTGGAACTACTGACCATCAAAACA 59.180 41.667 0.00 0.00 36.09 2.83
7281 7348 0.390124 TCGGTTGTTACGGCAGAAGT 59.610 50.000 0.00 0.00 0.00 3.01
7282 7349 1.659098 GATCGGTTGTTACGGCAGAAG 59.341 52.381 0.00 0.00 0.00 2.85
7347 7418 1.078285 TCATTCATGCAGCAGCGGA 60.078 52.632 0.00 0.00 46.23 5.54
7400 7472 0.796312 CGTACAGGCGTGCAGAAAAT 59.204 50.000 6.26 0.00 0.00 1.82
7412 7484 4.201822 GCAAAAATCCTAGCTTCGTACAGG 60.202 45.833 0.00 0.00 0.00 4.00
7453 7569 8.761575 TGGACATTAGATGCAAAAATTCTTTC 57.238 30.769 0.00 0.00 0.00 2.62
7491 7648 3.555547 GCAAAACCAAAACAGCCTTACAG 59.444 43.478 0.00 0.00 0.00 2.74
7542 7712 3.613494 TGCGTTTAGTTACATGGGCTA 57.387 42.857 0.00 0.00 0.00 3.93
7582 7767 7.227461 CGGATACATTGATTAAGATGCGTTAC 58.773 38.462 0.00 0.00 0.00 2.50
7592 7780 5.350365 GCGATAAGCCGGATACATTGATTAA 59.650 40.000 5.05 0.00 40.81 1.40
7623 7818 0.395312 AACGACGGAACCCTCATTGT 59.605 50.000 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.