Multiple sequence alignment - TraesCS7B01G238100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G238100 chr7B 100.000 3084 0 0 1 3084 443689214 443692297 0.000000e+00 5696.0
1 TraesCS7B01G238100 chr7B 84.044 1454 162 41 692 2127 443731918 443733319 0.000000e+00 1336.0
2 TraesCS7B01G238100 chr7B 85.318 1335 121 37 997 2321 443696517 443697786 0.000000e+00 1310.0
3 TraesCS7B01G238100 chr7B 88.043 92 9 2 601 691 443730444 443730534 1.170000e-19 108.0
4 TraesCS7B01G238100 chr7D 91.639 2679 130 51 456 3084 426449890 426452524 0.000000e+00 3620.0
5 TraesCS7B01G238100 chr7D 86.905 1428 129 31 933 2350 426496426 426497805 0.000000e+00 1548.0
6 TraesCS7B01G238100 chr7D 87.781 1334 99 30 997 2321 426517894 426519172 0.000000e+00 1502.0
7 TraesCS7B01G238100 chr7D 86.103 1432 138 27 928 2350 426632534 426633913 0.000000e+00 1485.0
8 TraesCS7B01G238100 chr7D 84.207 1564 168 42 601 2139 426643774 426645283 0.000000e+00 1447.0
9 TraesCS7B01G238100 chr7D 87.944 788 62 18 1290 2075 426488914 426489670 0.000000e+00 898.0
10 TraesCS7B01G238100 chr7D 92.476 319 20 2 4 318 574039998 574039680 1.300000e-123 453.0
11 TraesCS7B01G238100 chr7D 80.420 286 31 12 2415 2682 426452598 426452320 8.730000e-46 195.0
12 TraesCS7B01G238100 chr7D 86.154 130 13 4 321 448 623726880 623726754 5.360000e-28 135.0
13 TraesCS7B01G238100 chr7D 84.071 113 11 4 601 713 426637971 426638076 5.440000e-18 102.0
14 TraesCS7B01G238100 chr7A 92.031 1920 99 25 458 2350 507023397 507021505 0.000000e+00 2649.0
15 TraesCS7B01G238100 chr7A 92.173 1776 95 17 601 2350 507014776 507013019 0.000000e+00 2470.0
16 TraesCS7B01G238100 chr7A 92.389 946 58 5 1233 2165 506854997 506854053 0.000000e+00 1336.0
17 TraesCS7B01G238100 chr7A 96.000 250 10 0 997 1246 506873460 506873211 1.030000e-109 407.0
18 TraesCS7B01G238100 chr7A 86.345 249 20 10 2845 3084 729317979 729318222 3.050000e-65 259.0
19 TraesCS7B01G238100 chr7A 85.714 112 10 4 602 713 507018932 507018827 2.510000e-21 113.0
20 TraesCS7B01G238100 chr7A 98.148 54 1 0 319 372 705275113 705275060 9.100000e-16 95.3
21 TraesCS7B01G238100 chr2B 87.344 1928 162 40 456 2344 753834218 753836102 0.000000e+00 2134.0
22 TraesCS7B01G238100 chr2B 87.645 518 36 16 2353 2845 714794372 714794886 7.420000e-161 577.0
23 TraesCS7B01G238100 chr2B 90.361 249 15 5 2844 3084 794253907 794253660 4.960000e-83 318.0
24 TraesCS7B01G238100 chr2B 88.800 250 17 7 2844 3084 714794755 714794508 2.330000e-76 296.0
25 TraesCS7B01G238100 chr2B 88.353 249 19 6 2845 3084 771008558 771008805 1.080000e-74 291.0
26 TraesCS7B01G238100 chr5D 86.160 513 51 11 2352 2848 57441974 57441466 1.260000e-148 536.0
27 TraesCS7B01G238100 chr5D 94.006 317 15 1 5 317 518965733 518965417 7.740000e-131 477.0
28 TraesCS7B01G238100 chr5D 85.088 114 13 3 321 433 57372200 57372310 2.510000e-21 113.0
29 TraesCS7B01G238100 chr3D 86.180 521 38 17 2352 2845 432514493 432515006 1.630000e-147 532.0
30 TraesCS7B01G238100 chr3D 82.483 451 47 15 2345 2767 432515440 432514994 1.750000e-97 366.0
31 TraesCS7B01G238100 chr3D 88.000 250 17 9 2844 3084 432514875 432514630 1.810000e-72 283.0
32 TraesCS7B01G238100 chr1A 85.277 523 45 20 2353 2848 464126292 464125775 7.630000e-141 510.0
33 TraesCS7B01G238100 chr1A 89.286 252 13 10 2844 3084 464125908 464126156 1.390000e-78 303.0
34 TraesCS7B01G238100 chr1A 84.252 127 15 4 319 443 580454852 580454729 5.400000e-23 119.0
35 TraesCS7B01G238100 chr3A 85.545 505 50 16 2358 2845 578929784 578930282 9.870000e-140 507.0
36 TraesCS7B01G238100 chr3A 87.500 248 21 6 2845 3084 31240119 31240364 8.420000e-71 278.0
37 TraesCS7B01G238100 chr3A 94.444 126 7 0 2352 2477 19298992 19299117 8.730000e-46 195.0
38 TraesCS7B01G238100 chr4A 84.280 528 54 25 2352 2859 542275006 542275524 3.570000e-134 488.0
39 TraesCS7B01G238100 chr4A 87.149 249 19 9 2845 3084 511230171 511229927 1.410000e-68 270.0
40 TraesCS7B01G238100 chr6A 84.600 513 54 22 2352 2845 5571949 5572455 1.290000e-133 486.0
41 TraesCS7B01G238100 chr6A 83.380 361 28 14 2353 2686 48912126 48911771 3.860000e-79 305.0
42 TraesCS7B01G238100 chr6A 88.400 250 17 8 2845 3084 11040509 11040262 1.080000e-74 291.0
43 TraesCS7B01G238100 chrUn 84.405 513 55 22 2352 2845 344092873 344093379 5.980000e-132 481.0
44 TraesCS7B01G238100 chrUn 82.444 450 38 17 2345 2767 305392153 305392588 3.780000e-94 355.0
45 TraesCS7B01G238100 chrUn 82.366 448 37 18 2348 2767 344093800 344093367 4.890000e-93 351.0
46 TraesCS7B01G238100 chr1D 94.025 318 16 1 4 318 464785829 464785512 2.150000e-131 479.0
47 TraesCS7B01G238100 chr1D 91.718 326 23 2 4 326 11339895 11339571 1.690000e-122 449.0
48 TraesCS7B01G238100 chr4D 93.750 320 17 1 1 317 96719656 96719975 7.740000e-131 477.0
49 TraesCS7B01G238100 chr5A 93.730 319 16 2 4 318 641567607 641567289 2.780000e-130 475.0
50 TraesCS7B01G238100 chr2D 94.426 305 14 1 1 302 436016613 436016917 1.670000e-127 466.0
51 TraesCS7B01G238100 chr2D 83.613 537 43 24 2341 2858 476851149 476850639 2.170000e-126 462.0
52 TraesCS7B01G238100 chr5B 93.082 318 19 1 4 318 697803246 697802929 2.170000e-126 462.0
53 TraesCS7B01G238100 chr4B 93.038 316 19 1 5 317 8369185 8368870 2.800000e-125 459.0
54 TraesCS7B01G238100 chr3B 83.213 417 43 16 2352 2745 785077444 785077856 1.050000e-94 357.0
55 TraesCS7B01G238100 chr3B 81.941 443 41 17 2352 2767 173248870 173249300 3.810000e-89 339.0
56 TraesCS7B01G238100 chr2A 85.385 130 16 3 321 448 257849916 257850044 6.940000e-27 132.0
57 TraesCS7B01G238100 chr1B 83.333 132 17 4 319 448 49472900 49472772 1.940000e-22 117.0
58 TraesCS7B01G238100 chr6B 83.206 131 17 4 320 448 234557024 234557151 6.990000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G238100 chr7B 443689214 443692297 3083 False 5696.0 5696 100.0000 1 3084 1 chr7B.!!$F1 3083
1 TraesCS7B01G238100 chr7B 443696517 443697786 1269 False 1310.0 1310 85.3180 997 2321 1 chr7B.!!$F2 1324
2 TraesCS7B01G238100 chr7B 443730444 443733319 2875 False 722.0 1336 86.0435 601 2127 2 chr7B.!!$F3 1526
3 TraesCS7B01G238100 chr7D 426449890 426452524 2634 False 3620.0 3620 91.6390 456 3084 1 chr7D.!!$F1 2628
4 TraesCS7B01G238100 chr7D 426496426 426497805 1379 False 1548.0 1548 86.9050 933 2350 1 chr7D.!!$F3 1417
5 TraesCS7B01G238100 chr7D 426517894 426519172 1278 False 1502.0 1502 87.7810 997 2321 1 chr7D.!!$F4 1324
6 TraesCS7B01G238100 chr7D 426632534 426633913 1379 False 1485.0 1485 86.1030 928 2350 1 chr7D.!!$F5 1422
7 TraesCS7B01G238100 chr7D 426643774 426645283 1509 False 1447.0 1447 84.2070 601 2139 1 chr7D.!!$F7 1538
8 TraesCS7B01G238100 chr7D 426488914 426489670 756 False 898.0 898 87.9440 1290 2075 1 chr7D.!!$F2 785
9 TraesCS7B01G238100 chr7A 507013019 507014776 1757 True 2470.0 2470 92.1730 601 2350 1 chr7A.!!$R3 1749
10 TraesCS7B01G238100 chr7A 507018827 507023397 4570 True 1381.0 2649 88.8725 458 2350 2 chr7A.!!$R5 1892
11 TraesCS7B01G238100 chr7A 506854053 506854997 944 True 1336.0 1336 92.3890 1233 2165 1 chr7A.!!$R1 932
12 TraesCS7B01G238100 chr2B 753834218 753836102 1884 False 2134.0 2134 87.3440 456 2344 1 chr2B.!!$F2 1888
13 TraesCS7B01G238100 chr2B 714794372 714794886 514 False 577.0 577 87.6450 2353 2845 1 chr2B.!!$F1 492
14 TraesCS7B01G238100 chr5D 57441466 57441974 508 True 536.0 536 86.1600 2352 2848 1 chr5D.!!$R1 496
15 TraesCS7B01G238100 chr3D 432514493 432515006 513 False 532.0 532 86.1800 2352 2845 1 chr3D.!!$F1 493
16 TraesCS7B01G238100 chr3D 432514630 432515440 810 True 324.5 366 85.2415 2345 3084 2 chr3D.!!$R1 739
17 TraesCS7B01G238100 chr1A 464125775 464126292 517 True 510.0 510 85.2770 2353 2848 1 chr1A.!!$R1 495
18 TraesCS7B01G238100 chr4A 542275006 542275524 518 False 488.0 488 84.2800 2352 2859 1 chr4A.!!$F1 507
19 TraesCS7B01G238100 chr6A 5571949 5572455 506 False 486.0 486 84.6000 2352 2845 1 chr6A.!!$F1 493
20 TraesCS7B01G238100 chrUn 344092873 344093379 506 False 481.0 481 84.4050 2352 2845 1 chrUn.!!$F2 493
21 TraesCS7B01G238100 chr2D 476850639 476851149 510 True 462.0 462 83.6130 2341 2858 1 chr2D.!!$R1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
562 574 0.033366 AGCATTTCAACGGTTTGCCC 59.967 50.0 10.69 0.00 33.85 5.36 F
1963 3448 0.170339 TCGTGGAGATGTACAGCACG 59.830 55.0 14.51 14.34 36.13 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2032 3517 0.616395 TCACCTCTACGGGCATTCCA 60.616 55.00 0.0 0.0 36.97 3.53 R
2807 4619 4.043073 GGTCGTGGCAATAAAAACGAAAA 58.957 39.13 0.0 0.0 45.58 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.691702 GCGCGATATTCACTTCGTG 57.308 52.632 12.10 1.84 45.85 4.35
19 20 3.691702 CGCGATATTCACTTCGTGC 57.308 52.632 0.00 0.00 38.77 5.34
20 21 0.112137 CGCGATATTCACTTCGTGCG 60.112 55.000 0.00 0.00 38.77 5.34
21 22 0.381909 GCGATATTCACTTCGTGCGC 60.382 55.000 0.00 0.00 37.66 6.09
22 23 0.112137 CGATATTCACTTCGTGCGCG 60.112 55.000 14.79 14.79 39.92 6.86
23 24 1.197055 GATATTCACTTCGTGCGCGA 58.803 50.000 20.10 20.10 46.36 5.87
37 38 3.741476 GCGAGCAGGTTGCCCTTG 61.741 66.667 0.00 0.00 46.52 3.61
38 39 3.058160 CGAGCAGGTTGCCCTTGG 61.058 66.667 0.00 0.00 46.52 3.61
39 40 2.116125 GAGCAGGTTGCCCTTGGT 59.884 61.111 0.00 0.00 46.52 3.67
40 41 1.973812 GAGCAGGTTGCCCTTGGTC 60.974 63.158 0.00 0.28 46.52 4.02
41 42 3.365265 GCAGGTTGCCCTTGGTCG 61.365 66.667 0.00 0.00 39.89 4.79
42 43 2.672996 CAGGTTGCCCTTGGTCGG 60.673 66.667 0.00 0.00 39.89 4.79
44 45 4.280019 GGTTGCCCTTGGTCGGGT 62.280 66.667 0.00 0.00 46.47 5.28
45 46 2.203437 GTTGCCCTTGGTCGGGTT 60.203 61.111 0.00 0.00 46.47 4.11
46 47 2.114411 TTGCCCTTGGTCGGGTTC 59.886 61.111 0.00 0.00 46.47 3.62
47 48 3.835790 TTGCCCTTGGTCGGGTTCG 62.836 63.158 0.00 0.00 46.47 3.95
49 50 4.404098 CCCTTGGTCGGGTTCGGG 62.404 72.222 0.00 0.00 39.51 5.14
50 51 3.633116 CCTTGGTCGGGTTCGGGT 61.633 66.667 0.00 0.00 36.95 5.28
51 52 2.428622 CTTGGTCGGGTTCGGGTT 59.571 61.111 0.00 0.00 36.95 4.11
52 53 1.670083 CTTGGTCGGGTTCGGGTTC 60.670 63.158 0.00 0.00 36.95 3.62
53 54 2.108278 CTTGGTCGGGTTCGGGTTCT 62.108 60.000 0.00 0.00 36.95 3.01
54 55 2.103339 TTGGTCGGGTTCGGGTTCTC 62.103 60.000 0.00 0.00 36.95 2.87
55 56 2.263852 GTCGGGTTCGGGTTCTCC 59.736 66.667 0.00 0.00 36.95 3.71
56 57 2.203669 TCGGGTTCGGGTTCTCCA 60.204 61.111 0.00 0.00 36.95 3.86
57 58 2.047560 CGGGTTCGGGTTCTCCAC 60.048 66.667 0.00 0.00 34.36 4.02
58 59 2.047560 GGGTTCGGGTTCTCCACG 60.048 66.667 0.00 0.00 34.36 4.94
59 60 2.739132 GGTTCGGGTTCTCCACGT 59.261 61.111 0.00 0.00 34.36 4.49
60 61 1.666872 GGTTCGGGTTCTCCACGTG 60.667 63.158 9.08 9.08 34.36 4.49
61 62 2.029964 TTCGGGTTCTCCACGTGC 59.970 61.111 10.91 0.00 34.36 5.34
62 63 3.524648 TTCGGGTTCTCCACGTGCC 62.525 63.158 10.91 5.21 34.36 5.01
64 65 3.998672 GGGTTCTCCACGTGCCGA 61.999 66.667 10.91 5.42 35.00 5.54
65 66 2.737376 GGTTCTCCACGTGCCGAC 60.737 66.667 10.91 5.58 0.00 4.79
75 76 4.059459 GTGCCGACGACGCAACAG 62.059 66.667 0.64 0.00 38.29 3.16
76 77 4.578898 TGCCGACGACGCAACAGT 62.579 61.111 0.64 0.00 38.29 3.55
77 78 3.335534 GCCGACGACGCAACAGTT 61.336 61.111 0.64 0.00 38.29 3.16
78 79 2.877974 GCCGACGACGCAACAGTTT 61.878 57.895 0.64 0.00 38.29 2.66
79 80 1.083657 CCGACGACGCAACAGTTTG 60.084 57.895 0.64 0.00 38.29 2.93
91 92 4.492791 CAACAGTTTGCTGATGTGATGA 57.507 40.909 1.30 0.00 45.28 2.92
92 93 4.224433 CAACAGTTTGCTGATGTGATGAC 58.776 43.478 1.30 0.00 45.28 3.06
93 94 3.748083 ACAGTTTGCTGATGTGATGACT 58.252 40.909 1.30 0.00 45.28 3.41
94 95 4.898320 ACAGTTTGCTGATGTGATGACTA 58.102 39.130 1.30 0.00 45.28 2.59
95 96 5.308014 ACAGTTTGCTGATGTGATGACTAA 58.692 37.500 1.30 0.00 45.28 2.24
96 97 5.410746 ACAGTTTGCTGATGTGATGACTAAG 59.589 40.000 1.30 0.00 45.28 2.18
97 98 4.940046 AGTTTGCTGATGTGATGACTAAGG 59.060 41.667 0.00 0.00 0.00 2.69
98 99 3.548745 TGCTGATGTGATGACTAAGGG 57.451 47.619 0.00 0.00 0.00 3.95
99 100 3.106827 TGCTGATGTGATGACTAAGGGA 58.893 45.455 0.00 0.00 0.00 4.20
100 101 3.713248 TGCTGATGTGATGACTAAGGGAT 59.287 43.478 0.00 0.00 0.00 3.85
101 102 4.164796 TGCTGATGTGATGACTAAGGGATT 59.835 41.667 0.00 0.00 0.00 3.01
102 103 4.514441 GCTGATGTGATGACTAAGGGATTG 59.486 45.833 0.00 0.00 0.00 2.67
103 104 4.454678 TGATGTGATGACTAAGGGATTGC 58.545 43.478 0.00 0.00 0.00 3.56
104 105 3.281727 TGTGATGACTAAGGGATTGCC 57.718 47.619 0.00 0.00 0.00 4.52
105 106 2.846206 TGTGATGACTAAGGGATTGCCT 59.154 45.455 0.00 0.00 0.00 4.75
106 107 4.037222 TGTGATGACTAAGGGATTGCCTA 58.963 43.478 0.00 0.00 0.00 3.93
107 108 4.141711 TGTGATGACTAAGGGATTGCCTAC 60.142 45.833 0.00 0.00 0.00 3.18
108 109 4.101741 GTGATGACTAAGGGATTGCCTACT 59.898 45.833 0.00 0.00 0.00 2.57
109 110 4.345257 TGATGACTAAGGGATTGCCTACTC 59.655 45.833 0.00 0.00 0.00 2.59
110 111 3.039011 TGACTAAGGGATTGCCTACTCC 58.961 50.000 0.00 0.00 0.00 3.85
113 114 3.643398 GGGATTGCCTACTCCCGT 58.357 61.111 0.00 0.00 41.74 5.28
114 115 1.446366 GGGATTGCCTACTCCCGTC 59.554 63.158 0.00 0.00 41.74 4.79
115 116 1.049289 GGGATTGCCTACTCCCGTCT 61.049 60.000 0.00 0.00 41.74 4.18
116 117 0.831307 GGATTGCCTACTCCCGTCTT 59.169 55.000 0.00 0.00 0.00 3.01
117 118 1.202545 GGATTGCCTACTCCCGTCTTC 60.203 57.143 0.00 0.00 0.00 2.87
118 119 0.460311 ATTGCCTACTCCCGTCTTCG 59.540 55.000 0.00 0.00 0.00 3.79
119 120 0.609957 TTGCCTACTCCCGTCTTCGA 60.610 55.000 0.00 0.00 39.71 3.71
120 121 1.310933 TGCCTACTCCCGTCTTCGAC 61.311 60.000 0.00 0.00 39.71 4.20
130 131 3.468780 GTCTTCGACGAGTTTCGGT 57.531 52.632 0.00 0.00 45.59 4.69
131 132 1.325647 GTCTTCGACGAGTTTCGGTC 58.674 55.000 0.00 0.00 45.59 4.79
132 133 0.239347 TCTTCGACGAGTTTCGGTCC 59.761 55.000 0.00 0.00 45.59 4.46
133 134 0.039798 CTTCGACGAGTTTCGGTCCA 60.040 55.000 0.00 0.00 45.59 4.02
134 135 0.039798 TTCGACGAGTTTCGGTCCAG 60.040 55.000 0.00 0.00 45.59 3.86
135 136 1.168407 TCGACGAGTTTCGGTCCAGT 61.168 55.000 0.00 0.00 45.59 4.00
136 137 0.728466 CGACGAGTTTCGGTCCAGTC 60.728 60.000 3.37 0.00 45.59 3.51
137 138 0.597072 GACGAGTTTCGGTCCAGTCT 59.403 55.000 3.37 0.00 45.59 3.24
138 139 0.597072 ACGAGTTTCGGTCCAGTCTC 59.403 55.000 3.37 0.00 45.59 3.36
139 140 0.882474 CGAGTTTCGGTCCAGTCTCT 59.118 55.000 0.00 0.00 36.00 3.10
140 141 1.401670 CGAGTTTCGGTCCAGTCTCTG 60.402 57.143 0.00 0.00 36.00 3.35
141 142 1.614413 GAGTTTCGGTCCAGTCTCTGT 59.386 52.381 0.00 0.00 0.00 3.41
142 143 1.341531 AGTTTCGGTCCAGTCTCTGTG 59.658 52.381 0.00 0.00 0.00 3.66
143 144 1.068741 GTTTCGGTCCAGTCTCTGTGT 59.931 52.381 0.00 0.00 0.00 3.72
144 145 0.959553 TTCGGTCCAGTCTCTGTGTC 59.040 55.000 0.00 0.00 0.00 3.67
145 146 0.110678 TCGGTCCAGTCTCTGTGTCT 59.889 55.000 0.00 0.00 0.00 3.41
146 147 0.523966 CGGTCCAGTCTCTGTGTCTC 59.476 60.000 0.00 0.00 0.00 3.36
147 148 0.892063 GGTCCAGTCTCTGTGTCTCC 59.108 60.000 0.00 0.00 0.00 3.71
148 149 1.621992 GTCCAGTCTCTGTGTCTCCA 58.378 55.000 0.00 0.00 0.00 3.86
149 150 1.543802 GTCCAGTCTCTGTGTCTCCAG 59.456 57.143 0.00 0.00 0.00 3.86
150 151 0.246086 CCAGTCTCTGTGTCTCCAGC 59.754 60.000 0.00 0.00 32.32 4.85
151 152 0.109365 CAGTCTCTGTGTCTCCAGCG 60.109 60.000 0.00 0.00 32.32 5.18
152 153 0.250945 AGTCTCTGTGTCTCCAGCGA 60.251 55.000 0.00 0.00 32.32 4.93
153 154 0.814457 GTCTCTGTGTCTCCAGCGAT 59.186 55.000 0.00 0.00 29.71 4.58
154 155 0.813821 TCTCTGTGTCTCCAGCGATG 59.186 55.000 0.00 0.00 32.32 3.84
155 156 0.805322 CTCTGTGTCTCCAGCGATGC 60.805 60.000 0.00 0.00 32.32 3.91
156 157 1.217511 CTGTGTCTCCAGCGATGCT 59.782 57.895 0.00 0.00 40.77 3.79
157 158 0.390866 CTGTGTCTCCAGCGATGCTT 60.391 55.000 0.00 0.00 36.40 3.91
158 159 0.390340 TGTGTCTCCAGCGATGCTTC 60.390 55.000 0.00 0.00 36.40 3.86
168 169 2.892425 GATGCTTCGACTGCGGGG 60.892 66.667 0.00 0.00 38.28 5.73
169 170 4.473520 ATGCTTCGACTGCGGGGG 62.474 66.667 0.00 0.00 38.28 5.40
171 172 4.699522 GCTTCGACTGCGGGGGTT 62.700 66.667 0.00 0.00 38.28 4.11
172 173 2.742372 CTTCGACTGCGGGGGTTG 60.742 66.667 0.00 0.00 38.28 3.77
173 174 3.234630 CTTCGACTGCGGGGGTTGA 62.235 63.158 0.00 0.00 38.28 3.18
174 175 2.725203 CTTCGACTGCGGGGGTTGAA 62.725 60.000 0.00 0.00 38.28 2.69
175 176 2.046314 CGACTGCGGGGGTTGAAT 60.046 61.111 0.00 0.00 0.00 2.57
176 177 1.219664 CGACTGCGGGGGTTGAATA 59.780 57.895 0.00 0.00 0.00 1.75
177 178 0.179056 CGACTGCGGGGGTTGAATAT 60.179 55.000 0.00 0.00 0.00 1.28
178 179 1.069513 CGACTGCGGGGGTTGAATATA 59.930 52.381 0.00 0.00 0.00 0.86
179 180 2.289444 CGACTGCGGGGGTTGAATATAT 60.289 50.000 0.00 0.00 0.00 0.86
180 181 3.056393 CGACTGCGGGGGTTGAATATATA 60.056 47.826 0.00 0.00 0.00 0.86
181 182 4.382685 CGACTGCGGGGGTTGAATATATAT 60.383 45.833 0.00 0.00 0.00 0.86
182 183 5.497474 GACTGCGGGGGTTGAATATATATT 58.503 41.667 7.72 7.72 0.00 1.28
183 184 5.887754 ACTGCGGGGGTTGAATATATATTT 58.112 37.500 9.33 0.00 0.00 1.40
184 185 6.311735 ACTGCGGGGGTTGAATATATATTTT 58.688 36.000 9.33 0.00 0.00 1.82
185 186 6.208599 ACTGCGGGGGTTGAATATATATTTTG 59.791 38.462 9.33 0.00 0.00 2.44
186 187 6.071984 TGCGGGGGTTGAATATATATTTTGT 58.928 36.000 9.33 0.00 0.00 2.83
187 188 7.232188 TGCGGGGGTTGAATATATATTTTGTA 58.768 34.615 9.33 0.00 0.00 2.41
188 189 7.891183 TGCGGGGGTTGAATATATATTTTGTAT 59.109 33.333 9.33 0.00 0.00 2.29
189 190 8.745590 GCGGGGGTTGAATATATATTTTGTATT 58.254 33.333 9.33 0.00 0.00 1.89
191 192 9.869757 GGGGGTTGAATATATATTTTGTATTGC 57.130 33.333 9.33 0.00 0.00 3.56
204 205 7.795431 ATTTTGTATTGCACGTGTAATGAAG 57.205 32.000 33.38 1.48 32.67 3.02
205 206 5.933187 TTGTATTGCACGTGTAATGAAGT 57.067 34.783 33.38 16.34 32.67 3.01
206 207 5.933187 TGTATTGCACGTGTAATGAAGTT 57.067 34.783 33.38 15.69 32.67 2.66
207 208 5.684850 TGTATTGCACGTGTAATGAAGTTG 58.315 37.500 33.38 0.00 32.67 3.16
208 209 4.829064 ATTGCACGTGTAATGAAGTTGT 57.171 36.364 27.75 5.13 0.00 3.32
209 210 3.600717 TGCACGTGTAATGAAGTTGTG 57.399 42.857 18.38 0.00 0.00 3.33
210 211 2.289274 TGCACGTGTAATGAAGTTGTGG 59.711 45.455 18.38 0.00 0.00 4.17
211 212 2.916111 CACGTGTAATGAAGTTGTGGC 58.084 47.619 7.58 0.00 0.00 5.01
212 213 1.877443 ACGTGTAATGAAGTTGTGGCC 59.123 47.619 0.00 0.00 0.00 5.36
213 214 1.199097 CGTGTAATGAAGTTGTGGCCC 59.801 52.381 0.00 0.00 0.00 5.80
214 215 2.235016 GTGTAATGAAGTTGTGGCCCA 58.765 47.619 0.00 0.00 0.00 5.36
215 216 2.030274 GTGTAATGAAGTTGTGGCCCAC 60.030 50.000 7.01 7.01 34.56 4.61
216 217 1.544246 GTAATGAAGTTGTGGCCCACC 59.456 52.381 12.25 0.00 32.73 4.61
217 218 0.188342 AATGAAGTTGTGGCCCACCT 59.812 50.000 12.25 0.00 36.63 4.00
218 219 0.188342 ATGAAGTTGTGGCCCACCTT 59.812 50.000 12.25 8.30 36.63 3.50
219 220 0.467290 TGAAGTTGTGGCCCACCTTC 60.467 55.000 19.98 19.98 35.10 3.46
220 221 0.178990 GAAGTTGTGGCCCACCTTCT 60.179 55.000 19.68 10.10 33.26 2.85
221 222 1.073284 GAAGTTGTGGCCCACCTTCTA 59.927 52.381 19.68 0.00 33.26 2.10
222 223 0.693049 AGTTGTGGCCCACCTTCTAG 59.307 55.000 12.25 0.00 36.63 2.43
223 224 0.400594 GTTGTGGCCCACCTTCTAGT 59.599 55.000 12.25 0.00 36.63 2.57
224 225 0.690762 TTGTGGCCCACCTTCTAGTC 59.309 55.000 12.25 0.00 36.63 2.59
225 226 0.178903 TGTGGCCCACCTTCTAGTCT 60.179 55.000 12.25 0.00 36.63 3.24
226 227 0.984995 GTGGCCCACCTTCTAGTCTT 59.015 55.000 1.17 0.00 36.63 3.01
227 228 0.984230 TGGCCCACCTTCTAGTCTTG 59.016 55.000 0.00 0.00 36.63 3.02
228 229 0.984995 GGCCCACCTTCTAGTCTTGT 59.015 55.000 0.00 0.00 0.00 3.16
229 230 2.185387 GGCCCACCTTCTAGTCTTGTA 58.815 52.381 0.00 0.00 0.00 2.41
230 231 2.772515 GGCCCACCTTCTAGTCTTGTAT 59.227 50.000 0.00 0.00 0.00 2.29
231 232 3.965347 GGCCCACCTTCTAGTCTTGTATA 59.035 47.826 0.00 0.00 0.00 1.47
232 233 4.039366 GGCCCACCTTCTAGTCTTGTATAG 59.961 50.000 0.00 0.00 0.00 1.31
233 234 4.650131 GCCCACCTTCTAGTCTTGTATAGT 59.350 45.833 0.00 0.00 0.00 2.12
234 235 5.128991 GCCCACCTTCTAGTCTTGTATAGTT 59.871 44.000 0.00 0.00 0.00 2.24
235 236 6.574350 CCCACCTTCTAGTCTTGTATAGTTG 58.426 44.000 0.00 0.00 0.00 3.16
236 237 6.380274 CCCACCTTCTAGTCTTGTATAGTTGA 59.620 42.308 0.00 0.00 0.00 3.18
237 238 7.416890 CCCACCTTCTAGTCTTGTATAGTTGAG 60.417 44.444 0.00 0.00 0.00 3.02
238 239 7.416890 CCACCTTCTAGTCTTGTATAGTTGAGG 60.417 44.444 0.00 0.00 0.00 3.86
239 240 7.122948 CACCTTCTAGTCTTGTATAGTTGAGGT 59.877 40.741 0.00 0.00 32.94 3.85
240 241 8.334734 ACCTTCTAGTCTTGTATAGTTGAGGTA 58.665 37.037 0.00 0.00 32.00 3.08
241 242 8.842280 CCTTCTAGTCTTGTATAGTTGAGGTAG 58.158 40.741 0.00 0.00 0.00 3.18
242 243 9.616156 CTTCTAGTCTTGTATAGTTGAGGTAGA 57.384 37.037 0.00 0.00 0.00 2.59
243 244 9.616156 TTCTAGTCTTGTATAGTTGAGGTAGAG 57.384 37.037 0.00 0.00 0.00 2.43
244 245 8.212312 TCTAGTCTTGTATAGTTGAGGTAGAGG 58.788 40.741 0.00 0.00 0.00 3.69
245 246 5.595133 AGTCTTGTATAGTTGAGGTAGAGGC 59.405 44.000 0.00 0.00 0.00 4.70
246 247 4.894114 TCTTGTATAGTTGAGGTAGAGGCC 59.106 45.833 0.00 0.00 0.00 5.19
247 248 4.537945 TGTATAGTTGAGGTAGAGGCCT 57.462 45.455 3.86 3.86 42.53 5.19
248 249 4.880164 TGTATAGTTGAGGTAGAGGCCTT 58.120 43.478 6.77 0.00 39.34 4.35
249 250 4.894114 TGTATAGTTGAGGTAGAGGCCTTC 59.106 45.833 6.77 0.00 39.34 3.46
250 251 1.574263 AGTTGAGGTAGAGGCCTTCC 58.426 55.000 6.77 10.69 39.34 3.46
251 252 0.542333 GTTGAGGTAGAGGCCTTCCC 59.458 60.000 6.77 7.52 39.34 3.97
253 254 0.417841 TGAGGTAGAGGCCTTCCCTT 59.582 55.000 6.77 0.00 46.60 3.95
254 255 0.833949 GAGGTAGAGGCCTTCCCTTG 59.166 60.000 6.77 0.00 46.60 3.61
255 256 0.119358 AGGTAGAGGCCTTCCCTTGT 59.881 55.000 6.77 0.00 46.60 3.16
256 257 1.365028 AGGTAGAGGCCTTCCCTTGTA 59.635 52.381 6.77 0.00 46.60 2.41
257 258 2.021936 AGGTAGAGGCCTTCCCTTGTAT 60.022 50.000 6.77 0.00 46.60 2.29
258 259 2.778270 GGTAGAGGCCTTCCCTTGTATT 59.222 50.000 6.77 0.00 46.60 1.89
259 260 3.971971 GGTAGAGGCCTTCCCTTGTATTA 59.028 47.826 6.77 0.00 46.60 0.98
260 261 4.597940 GGTAGAGGCCTTCCCTTGTATTAT 59.402 45.833 6.77 0.00 46.60 1.28
261 262 5.783875 GGTAGAGGCCTTCCCTTGTATTATA 59.216 44.000 6.77 0.00 46.60 0.98
262 263 5.827326 AGAGGCCTTCCCTTGTATTATAC 57.173 43.478 6.77 0.00 46.60 1.47
263 264 5.224441 AGAGGCCTTCCCTTGTATTATACA 58.776 41.667 6.77 0.29 46.60 2.29
264 265 5.852250 AGAGGCCTTCCCTTGTATTATACAT 59.148 40.000 6.77 0.00 46.60 2.29
265 266 5.880901 AGGCCTTCCCTTGTATTATACATG 58.119 41.667 0.00 8.38 43.06 3.21
266 267 4.459337 GGCCTTCCCTTGTATTATACATGC 59.541 45.833 5.85 1.76 38.68 4.06
267 268 4.154195 GCCTTCCCTTGTATTATACATGCG 59.846 45.833 5.85 1.75 38.68 4.73
268 269 4.695455 CCTTCCCTTGTATTATACATGCGG 59.305 45.833 5.85 11.13 38.68 5.69
269 270 4.280436 TCCCTTGTATTATACATGCGGG 57.720 45.455 19.86 19.86 39.96 6.13
270 271 2.747446 CCCTTGTATTATACATGCGGGC 59.253 50.000 16.42 0.00 38.68 6.13
271 272 3.407698 CCTTGTATTATACATGCGGGCA 58.592 45.455 5.85 0.00 38.68 5.36
272 273 3.188460 CCTTGTATTATACATGCGGGCAC 59.812 47.826 5.85 0.00 38.68 5.01
273 274 2.773487 TGTATTATACATGCGGGCACC 58.227 47.619 0.29 0.00 38.55 5.01
274 275 2.104963 TGTATTATACATGCGGGCACCA 59.895 45.455 0.29 0.00 41.11 4.17
275 276 3.805457 TGTATTATACATGCGGGCACCAG 60.805 47.826 0.29 0.00 41.11 4.00
286 287 4.408821 GCACCAGCACCCCGATCA 62.409 66.667 0.00 0.00 41.58 2.92
287 288 2.350895 CACCAGCACCCCGATCAA 59.649 61.111 0.00 0.00 0.00 2.57
288 289 1.077501 CACCAGCACCCCGATCAAT 60.078 57.895 0.00 0.00 0.00 2.57
289 290 0.180171 CACCAGCACCCCGATCAATA 59.820 55.000 0.00 0.00 0.00 1.90
290 291 0.180406 ACCAGCACCCCGATCAATAC 59.820 55.000 0.00 0.00 0.00 1.89
291 292 0.180171 CCAGCACCCCGATCAATACA 59.820 55.000 0.00 0.00 0.00 2.29
292 293 1.202806 CCAGCACCCCGATCAATACAT 60.203 52.381 0.00 0.00 0.00 2.29
293 294 2.146342 CAGCACCCCGATCAATACATC 58.854 52.381 0.00 0.00 0.00 3.06
294 295 1.148310 GCACCCCGATCAATACATCG 58.852 55.000 0.00 0.00 44.45 3.84
295 296 1.540363 GCACCCCGATCAATACATCGT 60.540 52.381 2.46 0.00 43.53 3.73
296 297 2.288579 GCACCCCGATCAATACATCGTA 60.289 50.000 2.46 0.00 43.53 3.43
297 298 3.616560 GCACCCCGATCAATACATCGTAT 60.617 47.826 2.46 0.00 43.53 3.06
298 299 4.566004 CACCCCGATCAATACATCGTATT 58.434 43.478 2.46 0.00 43.53 1.89
299 300 4.388773 CACCCCGATCAATACATCGTATTG 59.611 45.833 17.04 17.04 43.53 1.90
300 301 3.370978 CCCCGATCAATACATCGTATTGC 59.629 47.826 17.95 7.76 43.53 3.56
301 302 3.993736 CCCGATCAATACATCGTATTGCA 59.006 43.478 17.95 10.13 43.53 4.08
302 303 4.450757 CCCGATCAATACATCGTATTGCAA 59.549 41.667 17.95 0.00 43.53 4.08
303 304 5.049749 CCCGATCAATACATCGTATTGCAAA 60.050 40.000 17.95 5.84 43.53 3.68
304 305 6.426327 CCGATCAATACATCGTATTGCAAAA 58.574 36.000 17.95 5.56 43.53 2.44
305 306 7.077605 CCGATCAATACATCGTATTGCAAAAT 58.922 34.615 17.95 9.23 43.53 1.82
306 307 8.227119 CCGATCAATACATCGTATTGCAAAATA 58.773 33.333 17.95 4.69 43.53 1.40
307 308 9.759259 CGATCAATACATCGTATTGCAAAATAT 57.241 29.630 17.95 8.40 40.72 1.28
311 312 9.882996 CAATACATCGTATTGCAAAATATCTGT 57.117 29.630 1.71 6.22 0.00 3.41
313 314 7.792374 ACATCGTATTGCAAAATATCTGTCT 57.208 32.000 1.71 0.00 0.00 3.41
314 315 8.887036 ACATCGTATTGCAAAATATCTGTCTA 57.113 30.769 1.71 0.00 0.00 2.59
315 316 8.765219 ACATCGTATTGCAAAATATCTGTCTAC 58.235 33.333 1.71 0.00 0.00 2.59
316 317 8.764287 CATCGTATTGCAAAATATCTGTCTACA 58.236 33.333 1.71 0.00 0.00 2.74
317 318 8.126871 TCGTATTGCAAAATATCTGTCTACAC 57.873 34.615 1.71 0.00 0.00 2.90
318 319 7.043656 TCGTATTGCAAAATATCTGTCTACACG 60.044 37.037 1.71 0.00 0.00 4.49
319 320 5.794687 TTGCAAAATATCTGTCTACACGG 57.205 39.130 0.00 0.00 0.00 4.94
320 321 5.079689 TGCAAAATATCTGTCTACACGGA 57.920 39.130 0.00 0.00 42.39 4.69
321 322 5.109210 TGCAAAATATCTGTCTACACGGAG 58.891 41.667 0.00 0.00 41.45 4.63
322 323 4.508124 GCAAAATATCTGTCTACACGGAGG 59.492 45.833 0.00 0.00 41.45 4.30
323 324 5.681437 GCAAAATATCTGTCTACACGGAGGA 60.681 44.000 0.00 0.00 41.45 3.71
324 325 6.516718 CAAAATATCTGTCTACACGGAGGAT 58.483 40.000 0.00 0.00 41.45 3.24
325 326 7.658261 CAAAATATCTGTCTACACGGAGGATA 58.342 38.462 0.00 0.00 41.45 2.59
326 327 7.455641 AAATATCTGTCTACACGGAGGATAG 57.544 40.000 0.00 0.00 41.45 2.08
327 328 3.210232 TCTGTCTACACGGAGGATAGG 57.790 52.381 0.00 0.00 32.50 2.57
328 329 2.775960 TCTGTCTACACGGAGGATAGGA 59.224 50.000 0.00 0.00 32.50 2.94
329 330 3.201487 TCTGTCTACACGGAGGATAGGAA 59.799 47.826 0.00 0.00 32.50 3.36
330 331 3.552875 TGTCTACACGGAGGATAGGAAG 58.447 50.000 0.00 0.00 0.00 3.46
331 332 3.201487 TGTCTACACGGAGGATAGGAAGA 59.799 47.826 0.00 0.00 0.00 2.87
332 333 4.205587 GTCTACACGGAGGATAGGAAGAA 58.794 47.826 0.00 0.00 0.00 2.52
333 334 4.828387 GTCTACACGGAGGATAGGAAGAAT 59.172 45.833 0.00 0.00 0.00 2.40
334 335 5.302313 GTCTACACGGAGGATAGGAAGAATT 59.698 44.000 0.00 0.00 0.00 2.17
335 336 6.489361 GTCTACACGGAGGATAGGAAGAATTA 59.511 42.308 0.00 0.00 0.00 1.40
336 337 5.532664 ACACGGAGGATAGGAAGAATTAC 57.467 43.478 0.00 0.00 0.00 1.89
337 338 5.209659 ACACGGAGGATAGGAAGAATTACT 58.790 41.667 0.00 0.00 45.20 2.24
338 339 5.302313 ACACGGAGGATAGGAAGAATTACTC 59.698 44.000 0.00 0.00 28.40 2.59
339 340 4.833938 ACGGAGGATAGGAAGAATTACTCC 59.166 45.833 0.00 0.00 28.40 3.85
340 341 4.833380 CGGAGGATAGGAAGAATTACTCCA 59.167 45.833 0.00 0.00 28.40 3.86
341 342 5.482175 CGGAGGATAGGAAGAATTACTCCAT 59.518 44.000 0.00 0.92 28.40 3.41
342 343 6.663953 CGGAGGATAGGAAGAATTACTCCATA 59.336 42.308 0.00 0.00 28.40 2.74
343 344 7.147983 CGGAGGATAGGAAGAATTACTCCATAG 60.148 44.444 0.00 0.00 28.40 2.23
344 345 7.896496 GGAGGATAGGAAGAATTACTCCATAGA 59.104 40.741 0.00 0.00 28.40 1.98
345 346 9.315363 GAGGATAGGAAGAATTACTCCATAGAA 57.685 37.037 7.79 0.00 28.40 2.10
346 347 9.676129 AGGATAGGAAGAATTACTCCATAGAAA 57.324 33.333 7.79 0.00 28.40 2.52
351 352 9.676129 AGGAAGAATTACTCCATAGAAATAGGA 57.324 33.333 7.79 0.00 28.40 2.94
360 361 8.144862 ACTCCATAGAAATAGGATCTCATTCC 57.855 38.462 0.00 0.00 35.90 3.01
370 371 5.779241 AGGATCTCATTCCTACAAACCAA 57.221 39.130 0.00 0.00 44.50 3.67
371 372 6.139679 AGGATCTCATTCCTACAAACCAAA 57.860 37.500 0.00 0.00 44.50 3.28
372 373 6.735556 AGGATCTCATTCCTACAAACCAAAT 58.264 36.000 0.00 0.00 44.50 2.32
373 374 6.604795 AGGATCTCATTCCTACAAACCAAATG 59.395 38.462 0.00 0.00 44.50 2.32
374 375 6.183360 GGATCTCATTCCTACAAACCAAATGG 60.183 42.308 0.00 0.00 35.53 3.16
375 376 4.462483 TCTCATTCCTACAAACCAAATGGC 59.538 41.667 0.00 0.00 39.32 4.40
376 377 4.415596 TCATTCCTACAAACCAAATGGCT 58.584 39.130 0.00 0.00 39.32 4.75
377 378 4.462483 TCATTCCTACAAACCAAATGGCTC 59.538 41.667 0.00 0.00 39.32 4.70
378 379 3.806949 TCCTACAAACCAAATGGCTCT 57.193 42.857 0.00 0.00 39.32 4.09
379 380 4.919774 TCCTACAAACCAAATGGCTCTA 57.080 40.909 0.00 0.00 39.32 2.43
380 381 5.249780 TCCTACAAACCAAATGGCTCTAA 57.750 39.130 0.00 0.00 39.32 2.10
381 382 5.636123 TCCTACAAACCAAATGGCTCTAAA 58.364 37.500 0.00 0.00 39.32 1.85
382 383 5.710099 TCCTACAAACCAAATGGCTCTAAAG 59.290 40.000 0.00 0.00 39.32 1.85
383 384 5.710099 CCTACAAACCAAATGGCTCTAAAGA 59.290 40.000 0.00 0.00 39.32 2.52
384 385 6.378280 CCTACAAACCAAATGGCTCTAAAGAT 59.622 38.462 0.00 0.00 39.32 2.40
385 386 6.670695 ACAAACCAAATGGCTCTAAAGATT 57.329 33.333 0.00 0.00 39.32 2.40
386 387 7.066307 ACAAACCAAATGGCTCTAAAGATTT 57.934 32.000 0.00 0.00 39.32 2.17
387 388 7.508687 ACAAACCAAATGGCTCTAAAGATTTT 58.491 30.769 0.00 0.00 39.32 1.82
388 389 7.992608 ACAAACCAAATGGCTCTAAAGATTTTT 59.007 29.630 0.00 0.00 39.32 1.94
432 433 8.805145 TCCTATTGAAATCCTAGAGAATTCCT 57.195 34.615 0.65 1.84 34.02 3.36
433 434 8.875168 TCCTATTGAAATCCTAGAGAATTCCTC 58.125 37.037 0.65 0.00 42.28 3.71
434 435 8.100164 CCTATTGAAATCCTAGAGAATTCCTCC 58.900 40.741 0.65 0.00 42.97 4.30
435 436 6.891306 TTGAAATCCTAGAGAATTCCTCCA 57.109 37.500 0.65 0.00 42.97 3.86
436 437 6.891306 TGAAATCCTAGAGAATTCCTCCAA 57.109 37.500 0.65 0.00 42.97 3.53
437 438 7.270832 TGAAATCCTAGAGAATTCCTCCAAA 57.729 36.000 0.65 0.00 42.97 3.28
438 439 7.341805 TGAAATCCTAGAGAATTCCTCCAAAG 58.658 38.462 0.65 0.00 42.97 2.77
439 440 4.762289 TCCTAGAGAATTCCTCCAAAGC 57.238 45.455 0.65 0.00 42.97 3.51
440 441 4.104086 TCCTAGAGAATTCCTCCAAAGCA 58.896 43.478 0.65 0.00 42.97 3.91
441 442 4.536090 TCCTAGAGAATTCCTCCAAAGCAA 59.464 41.667 0.65 0.00 42.97 3.91
442 443 5.014123 TCCTAGAGAATTCCTCCAAAGCAAA 59.986 40.000 0.65 0.00 42.97 3.68
443 444 5.356470 CCTAGAGAATTCCTCCAAAGCAAAG 59.644 44.000 0.65 0.00 42.97 2.77
444 445 4.085009 AGAGAATTCCTCCAAAGCAAAGG 58.915 43.478 0.65 0.00 42.97 3.11
445 446 4.082125 GAGAATTCCTCCAAAGCAAAGGA 58.918 43.478 0.65 0.00 37.42 3.36
449 450 3.753787 CTCCAAAGCAAAGGAGGGT 57.246 52.632 9.71 0.00 46.11 4.34
450 451 2.879103 CTCCAAAGCAAAGGAGGGTA 57.121 50.000 9.71 0.00 46.11 3.69
451 452 3.372440 CTCCAAAGCAAAGGAGGGTAT 57.628 47.619 9.71 0.00 46.11 2.73
452 453 3.019564 CTCCAAAGCAAAGGAGGGTATG 58.980 50.000 9.71 0.00 46.11 2.39
453 454 2.378547 TCCAAAGCAAAGGAGGGTATGT 59.621 45.455 0.00 0.00 0.00 2.29
454 455 3.165071 CCAAAGCAAAGGAGGGTATGTT 58.835 45.455 0.00 0.00 0.00 2.71
560 572 1.851658 ACAGCATTTCAACGGTTTGC 58.148 45.000 7.08 7.08 32.17 3.68
561 573 1.139163 CAGCATTTCAACGGTTTGCC 58.861 50.000 10.69 0.00 33.85 4.52
562 574 0.033366 AGCATTTCAACGGTTTGCCC 59.967 50.000 10.69 0.00 33.85 5.36
563 575 0.948623 GCATTTCAACGGTTTGCCCC 60.949 55.000 4.34 0.00 32.17 5.80
564 576 0.390860 CATTTCAACGGTTTGCCCCA 59.609 50.000 0.00 0.00 32.17 4.96
565 577 0.678950 ATTTCAACGGTTTGCCCCAG 59.321 50.000 0.00 0.00 32.17 4.45
566 578 2.022240 TTTCAACGGTTTGCCCCAGC 62.022 55.000 0.00 0.00 40.48 4.85
567 579 4.341502 CAACGGTTTGCCCCAGCG 62.342 66.667 0.00 0.00 44.31 5.18
715 2112 4.919774 TTAGTTAGCCTGTCAATTCCCA 57.080 40.909 0.00 0.00 0.00 4.37
834 2250 2.850404 GTTCGCACATTCGCACGA 59.150 55.556 0.00 0.00 0.00 4.35
879 2298 9.424319 CAAACCGAACTCTATATAAGCATATGT 57.576 33.333 4.29 0.00 0.00 2.29
893 2312 3.646162 AGCATATGTTTCCCCACTCGATA 59.354 43.478 4.29 0.00 0.00 2.92
1063 2503 0.532573 CCTCTTGGTTGCTCTCGCTA 59.467 55.000 0.00 0.00 36.97 4.26
1203 2646 1.592223 CGTCCTCCGCCTCTTCTTT 59.408 57.895 0.00 0.00 0.00 2.52
1253 2707 9.126151 TCACCTCTATTCTCTATACAACTTCTG 57.874 37.037 0.00 0.00 0.00 3.02
1444 2929 1.443702 CGACGACATCAAGTCCGCA 60.444 57.895 0.00 0.00 44.66 5.69
1963 3448 0.170339 TCGTGGAGATGTACAGCACG 59.830 55.000 14.51 14.34 36.13 5.34
2044 3529 2.923035 CCCCATGGAATGCCCGTA 59.077 61.111 15.22 0.00 44.97 4.02
2067 3552 0.250467 GTGAGGCTCAAGTGCTCCAA 60.250 55.000 20.62 0.00 0.00 3.53
2203 3704 4.799564 TTCTTTTGCCCATACAATGTCC 57.200 40.909 0.00 0.00 0.00 4.02
2234 3735 6.841119 CAGAATGTTCGACACAAATATTCCA 58.159 36.000 4.87 0.00 39.50 3.53
2248 3749 7.009448 CACAAATATTCCAATACATGTGTGTGC 59.991 37.037 9.11 0.00 39.39 4.57
2250 3751 0.801872 TCCAATACATGTGTGTGCGC 59.198 50.000 9.11 0.00 39.39 6.09
2252 3753 1.127571 CAATACATGTGTGTGCGCGC 61.128 55.000 27.26 27.26 39.39 6.86
2412 4096 3.581265 TTAGTTTTCGTCCCCCAACTT 57.419 42.857 0.00 0.00 31.83 2.66
2438 4122 1.966451 GGACAAAGTGCACCCCGAG 60.966 63.158 14.63 1.89 0.00 4.63
2479 4173 1.009389 CGTCCCTGCGACTGAGTTTC 61.009 60.000 0.00 0.00 39.56 2.78
2482 4176 0.034059 CCCTGCGACTGAGTTTCACT 59.966 55.000 0.00 0.00 0.00 3.41
2487 4181 4.380550 CCTGCGACTGAGTTTCACTATGTA 60.381 45.833 0.00 0.00 0.00 2.29
2521 4215 6.538742 ACATCCGATGAACAGTAAATTCGAAT 59.461 34.615 15.47 4.39 0.00 3.34
2522 4216 7.709182 ACATCCGATGAACAGTAAATTCGAATA 59.291 33.333 15.47 0.00 0.00 1.75
2523 4217 8.547894 CATCCGATGAACAGTAAATTCGAATAA 58.452 33.333 11.83 0.00 0.00 1.40
2524 4218 8.657074 TCCGATGAACAGTAAATTCGAATAAT 57.343 30.769 11.83 6.35 0.00 1.28
2525 4219 9.752961 TCCGATGAACAGTAAATTCGAATAATA 57.247 29.630 11.83 5.32 0.00 0.98
2527 4221 9.517361 CGATGAACAGTAAATTCGAATAATAGC 57.483 33.333 11.83 0.95 0.00 2.97
2593 4323 4.201608 CCATGTGCGTGCAAATTTTATCAC 60.202 41.667 0.00 0.00 0.00 3.06
3069 6704 8.977412 TGGATTTACTGTTCATCTGATGTACTA 58.023 33.333 22.43 9.54 32.55 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 3.186656 AACCCGAACCCGACCAAGG 62.187 63.158 0.00 0.00 38.22 3.61
34 35 1.670083 GAACCCGAACCCGACCAAG 60.670 63.158 0.00 0.00 38.22 3.61
35 36 2.103339 GAGAACCCGAACCCGACCAA 62.103 60.000 0.00 0.00 38.22 3.67
36 37 2.524887 AGAACCCGAACCCGACCA 60.525 61.111 0.00 0.00 38.22 4.02
37 38 2.263852 GAGAACCCGAACCCGACC 59.736 66.667 0.00 0.00 38.22 4.79
38 39 2.263852 GGAGAACCCGAACCCGAC 59.736 66.667 0.00 0.00 38.22 4.79
39 40 2.203669 TGGAGAACCCGAACCCGA 60.204 61.111 0.00 0.00 38.22 5.14
40 41 2.047560 GTGGAGAACCCGAACCCG 60.048 66.667 0.00 0.00 37.93 5.28
41 42 2.047560 CGTGGAGAACCCGAACCC 60.048 66.667 0.00 0.00 37.93 4.11
42 43 1.666872 CACGTGGAGAACCCGAACC 60.667 63.158 7.95 0.00 37.93 3.62
43 44 2.315386 GCACGTGGAGAACCCGAAC 61.315 63.158 18.88 0.00 37.93 3.95
44 45 2.029964 GCACGTGGAGAACCCGAA 59.970 61.111 18.88 0.00 37.93 4.30
45 46 3.998672 GGCACGTGGAGAACCCGA 61.999 66.667 18.88 0.00 37.93 5.14
58 59 4.059459 CTGTTGCGTCGTCGGCAC 62.059 66.667 3.90 0.00 37.56 5.01
59 60 4.578898 ACTGTTGCGTCGTCGGCA 62.579 61.111 3.90 0.00 37.56 5.69
60 61 2.877974 AAACTGTTGCGTCGTCGGC 61.878 57.895 3.90 0.00 37.56 5.54
61 62 1.083657 CAAACTGTTGCGTCGTCGG 60.084 57.895 3.90 0.00 37.56 4.79
62 63 4.471814 CAAACTGTTGCGTCGTCG 57.528 55.556 0.00 0.00 40.37 5.12
70 71 4.023450 AGTCATCACATCAGCAAACTGTTG 60.023 41.667 0.00 3.25 45.35 3.33
71 72 4.139786 AGTCATCACATCAGCAAACTGTT 58.860 39.130 0.00 0.00 44.77 3.16
72 73 3.748083 AGTCATCACATCAGCAAACTGT 58.252 40.909 0.00 0.00 44.77 3.55
73 74 5.163784 CCTTAGTCATCACATCAGCAAACTG 60.164 44.000 0.00 0.00 45.95 3.16
74 75 4.940046 CCTTAGTCATCACATCAGCAAACT 59.060 41.667 0.00 0.00 0.00 2.66
75 76 4.095483 CCCTTAGTCATCACATCAGCAAAC 59.905 45.833 0.00 0.00 0.00 2.93
76 77 4.019411 TCCCTTAGTCATCACATCAGCAAA 60.019 41.667 0.00 0.00 0.00 3.68
77 78 3.519107 TCCCTTAGTCATCACATCAGCAA 59.481 43.478 0.00 0.00 0.00 3.91
78 79 3.106827 TCCCTTAGTCATCACATCAGCA 58.893 45.455 0.00 0.00 0.00 4.41
79 80 3.827008 TCCCTTAGTCATCACATCAGC 57.173 47.619 0.00 0.00 0.00 4.26
80 81 4.514441 GCAATCCCTTAGTCATCACATCAG 59.486 45.833 0.00 0.00 0.00 2.90
81 82 4.454678 GCAATCCCTTAGTCATCACATCA 58.545 43.478 0.00 0.00 0.00 3.07
82 83 3.817647 GGCAATCCCTTAGTCATCACATC 59.182 47.826 0.00 0.00 0.00 3.06
83 84 3.461085 AGGCAATCCCTTAGTCATCACAT 59.539 43.478 0.00 0.00 43.06 3.21
84 85 2.846206 AGGCAATCCCTTAGTCATCACA 59.154 45.455 0.00 0.00 43.06 3.58
85 86 3.567478 AGGCAATCCCTTAGTCATCAC 57.433 47.619 0.00 0.00 43.06 3.06
86 87 4.298626 AGTAGGCAATCCCTTAGTCATCA 58.701 43.478 0.00 0.00 43.06 3.07
87 88 4.262678 GGAGTAGGCAATCCCTTAGTCATC 60.263 50.000 0.00 0.00 43.06 2.92
88 89 3.648545 GGAGTAGGCAATCCCTTAGTCAT 59.351 47.826 0.00 0.00 43.06 3.06
89 90 3.039011 GGAGTAGGCAATCCCTTAGTCA 58.961 50.000 0.00 0.00 43.06 3.41
90 91 3.755112 GGAGTAGGCAATCCCTTAGTC 57.245 52.381 0.00 0.00 43.06 2.59
113 114 0.239347 GGACCGAAACTCGTCGAAGA 59.761 55.000 0.03 0.03 43.86 2.87
114 115 0.039798 TGGACCGAAACTCGTCGAAG 60.040 55.000 0.00 0.00 43.86 3.79
115 116 0.039798 CTGGACCGAAACTCGTCGAA 60.040 55.000 0.00 0.00 43.86 3.71
116 117 1.168407 ACTGGACCGAAACTCGTCGA 61.168 55.000 0.00 0.00 43.86 4.20
117 118 0.728466 GACTGGACCGAAACTCGTCG 60.728 60.000 0.00 0.00 38.40 5.12
118 119 0.597072 AGACTGGACCGAAACTCGTC 59.403 55.000 0.00 0.00 38.40 4.20
119 120 0.597072 GAGACTGGACCGAAACTCGT 59.403 55.000 0.00 0.00 38.40 4.18
120 121 0.882474 AGAGACTGGACCGAAACTCG 59.118 55.000 0.00 0.00 40.07 4.18
121 122 1.614413 ACAGAGACTGGACCGAAACTC 59.386 52.381 0.00 0.00 35.51 3.01
122 123 1.341531 CACAGAGACTGGACCGAAACT 59.658 52.381 0.00 0.00 35.51 2.66
123 124 1.068741 ACACAGAGACTGGACCGAAAC 59.931 52.381 0.00 0.00 35.51 2.78
124 125 1.340248 GACACAGAGACTGGACCGAAA 59.660 52.381 0.00 0.00 35.51 3.46
125 126 0.959553 GACACAGAGACTGGACCGAA 59.040 55.000 0.00 0.00 35.51 4.30
126 127 0.110678 AGACACAGAGACTGGACCGA 59.889 55.000 0.00 0.00 35.51 4.69
127 128 0.523966 GAGACACAGAGACTGGACCG 59.476 60.000 0.00 0.00 35.51 4.79
128 129 0.892063 GGAGACACAGAGACTGGACC 59.108 60.000 0.00 0.00 35.51 4.46
129 130 1.543802 CTGGAGACACAGAGACTGGAC 59.456 57.143 0.00 0.00 40.97 4.02
130 131 1.916506 CTGGAGACACAGAGACTGGA 58.083 55.000 0.00 0.00 40.97 3.86
131 132 0.246086 GCTGGAGACACAGAGACTGG 59.754 60.000 0.00 0.00 40.97 4.00
132 133 0.109365 CGCTGGAGACACAGAGACTG 60.109 60.000 0.00 0.00 40.18 3.51
133 134 0.250945 TCGCTGGAGACACAGAGACT 60.251 55.000 0.00 0.00 41.37 3.24
134 135 2.258317 TCGCTGGAGACACAGAGAC 58.742 57.895 0.00 0.00 41.37 3.36
135 136 4.821935 TCGCTGGAGACACAGAGA 57.178 55.556 0.00 0.00 43.47 3.10
136 137 0.805322 GCATCGCTGGAGACACAGAG 60.805 60.000 0.00 0.00 40.97 3.35
137 138 1.216444 GCATCGCTGGAGACACAGA 59.784 57.895 0.00 0.00 40.97 3.41
138 139 0.390866 AAGCATCGCTGGAGACACAG 60.391 55.000 0.00 0.00 39.62 3.66
139 140 0.390340 GAAGCATCGCTGGAGACACA 60.390 55.000 0.00 0.00 39.62 3.72
140 141 1.416813 CGAAGCATCGCTGGAGACAC 61.417 60.000 0.00 0.00 42.96 3.67
141 142 1.153765 CGAAGCATCGCTGGAGACA 60.154 57.895 0.00 0.00 42.96 3.41
142 143 3.698382 CGAAGCATCGCTGGAGAC 58.302 61.111 0.00 0.00 42.96 3.36
151 152 2.892425 CCCCGCAGTCGAAGCATC 60.892 66.667 11.14 0.00 38.10 3.91
152 153 4.473520 CCCCCGCAGTCGAAGCAT 62.474 66.667 11.14 0.00 38.10 3.79
154 155 4.699522 AACCCCCGCAGTCGAAGC 62.700 66.667 1.21 1.21 38.10 3.86
155 156 2.725203 TTCAACCCCCGCAGTCGAAG 62.725 60.000 0.00 0.00 38.10 3.79
156 157 2.119484 ATTCAACCCCCGCAGTCGAA 62.119 55.000 0.00 0.00 38.10 3.71
157 158 1.259142 TATTCAACCCCCGCAGTCGA 61.259 55.000 0.00 0.00 38.10 4.20
158 159 0.179056 ATATTCAACCCCCGCAGTCG 60.179 55.000 0.00 0.00 0.00 4.18
159 160 2.922740 TATATTCAACCCCCGCAGTC 57.077 50.000 0.00 0.00 0.00 3.51
160 161 5.514500 AATATATATTCAACCCCCGCAGT 57.486 39.130 1.91 0.00 0.00 4.40
161 162 6.208599 ACAAAATATATATTCAACCCCCGCAG 59.791 38.462 8.42 0.00 0.00 5.18
162 163 6.071984 ACAAAATATATATTCAACCCCCGCA 58.928 36.000 8.42 0.00 0.00 5.69
163 164 6.584185 ACAAAATATATATTCAACCCCCGC 57.416 37.500 8.42 0.00 0.00 6.13
165 166 9.869757 GCAATACAAAATATATATTCAACCCCC 57.130 33.333 8.42 0.00 0.00 5.40
178 179 9.502145 CTTCATTACACGTGCAATACAAAATAT 57.498 29.630 17.22 0.00 0.00 1.28
179 180 8.508062 ACTTCATTACACGTGCAATACAAAATA 58.492 29.630 17.22 0.00 0.00 1.40
180 181 7.367285 ACTTCATTACACGTGCAATACAAAAT 58.633 30.769 17.22 0.00 0.00 1.82
181 182 6.730175 ACTTCATTACACGTGCAATACAAAA 58.270 32.000 17.22 6.55 0.00 2.44
182 183 6.307031 ACTTCATTACACGTGCAATACAAA 57.693 33.333 17.22 8.84 0.00 2.83
183 184 5.933187 ACTTCATTACACGTGCAATACAA 57.067 34.783 17.22 9.75 0.00 2.41
184 185 5.237561 ACAACTTCATTACACGTGCAATACA 59.762 36.000 17.22 1.77 0.00 2.29
185 186 5.563751 CACAACTTCATTACACGTGCAATAC 59.436 40.000 17.22 0.00 0.00 1.89
186 187 5.334491 CCACAACTTCATTACACGTGCAATA 60.334 40.000 17.22 0.00 0.00 1.90
187 188 4.536065 CACAACTTCATTACACGTGCAAT 58.464 39.130 17.22 12.38 0.00 3.56
188 189 3.242903 CCACAACTTCATTACACGTGCAA 60.243 43.478 17.22 10.10 0.00 4.08
189 190 2.289274 CCACAACTTCATTACACGTGCA 59.711 45.455 17.22 0.00 0.00 4.57
190 191 2.916111 CCACAACTTCATTACACGTGC 58.084 47.619 17.22 0.00 0.00 5.34
191 192 2.350388 GGCCACAACTTCATTACACGTG 60.350 50.000 15.48 15.48 0.00 4.49
192 193 1.877443 GGCCACAACTTCATTACACGT 59.123 47.619 0.00 0.00 0.00 4.49
193 194 1.199097 GGGCCACAACTTCATTACACG 59.801 52.381 4.39 0.00 0.00 4.49
194 195 2.030274 GTGGGCCACAACTTCATTACAC 60.030 50.000 31.26 0.00 34.08 2.90
195 196 2.235016 GTGGGCCACAACTTCATTACA 58.765 47.619 31.26 0.00 34.08 2.41
196 197 1.544246 GGTGGGCCACAACTTCATTAC 59.456 52.381 35.69 12.40 35.86 1.89
197 198 1.917872 GGTGGGCCACAACTTCATTA 58.082 50.000 35.69 0.00 35.86 1.90
198 199 2.745379 GGTGGGCCACAACTTCATT 58.255 52.632 35.69 0.00 35.86 2.57
199 200 4.519610 GGTGGGCCACAACTTCAT 57.480 55.556 35.69 0.00 35.86 2.57
204 205 0.400594 ACTAGAAGGTGGGCCACAAC 59.599 55.000 35.69 24.65 35.86 3.32
205 206 0.690762 GACTAGAAGGTGGGCCACAA 59.309 55.000 35.69 15.37 35.86 3.33
206 207 0.178903 AGACTAGAAGGTGGGCCACA 60.179 55.000 35.69 15.84 35.86 4.17
207 208 0.984995 AAGACTAGAAGGTGGGCCAC 59.015 55.000 28.69 28.69 37.19 5.01
208 209 0.984230 CAAGACTAGAAGGTGGGCCA 59.016 55.000 0.00 0.00 37.19 5.36
209 210 0.984995 ACAAGACTAGAAGGTGGGCC 59.015 55.000 0.00 0.00 0.00 5.80
210 211 4.650131 ACTATACAAGACTAGAAGGTGGGC 59.350 45.833 0.00 0.00 0.00 5.36
211 212 6.380274 TCAACTATACAAGACTAGAAGGTGGG 59.620 42.308 0.00 0.00 0.00 4.61
212 213 7.406031 TCAACTATACAAGACTAGAAGGTGG 57.594 40.000 0.00 0.00 0.00 4.61
213 214 7.122948 ACCTCAACTATACAAGACTAGAAGGTG 59.877 40.741 0.00 0.00 31.30 4.00
214 215 7.183460 ACCTCAACTATACAAGACTAGAAGGT 58.817 38.462 0.00 0.00 0.00 3.50
215 216 7.648039 ACCTCAACTATACAAGACTAGAAGG 57.352 40.000 0.00 0.00 0.00 3.46
216 217 9.616156 TCTACCTCAACTATACAAGACTAGAAG 57.384 37.037 0.00 0.00 0.00 2.85
217 218 9.616156 CTCTACCTCAACTATACAAGACTAGAA 57.384 37.037 0.00 0.00 0.00 2.10
218 219 8.212312 CCTCTACCTCAACTATACAAGACTAGA 58.788 40.741 0.00 0.00 0.00 2.43
219 220 7.040961 GCCTCTACCTCAACTATACAAGACTAG 60.041 44.444 0.00 0.00 0.00 2.57
220 221 6.771749 GCCTCTACCTCAACTATACAAGACTA 59.228 42.308 0.00 0.00 0.00 2.59
221 222 5.595133 GCCTCTACCTCAACTATACAAGACT 59.405 44.000 0.00 0.00 0.00 3.24
222 223 5.221283 GGCCTCTACCTCAACTATACAAGAC 60.221 48.000 0.00 0.00 0.00 3.01
223 224 4.894114 GGCCTCTACCTCAACTATACAAGA 59.106 45.833 0.00 0.00 0.00 3.02
224 225 4.896482 AGGCCTCTACCTCAACTATACAAG 59.104 45.833 0.00 0.00 33.62 3.16
225 226 4.880164 AGGCCTCTACCTCAACTATACAA 58.120 43.478 0.00 0.00 33.62 2.41
226 227 4.537945 AGGCCTCTACCTCAACTATACA 57.462 45.455 0.00 0.00 33.62 2.29
227 228 4.281435 GGAAGGCCTCTACCTCAACTATAC 59.719 50.000 5.23 0.00 39.93 1.47
228 229 4.481072 GGAAGGCCTCTACCTCAACTATA 58.519 47.826 5.23 0.00 39.93 1.31
229 230 3.310193 GGAAGGCCTCTACCTCAACTAT 58.690 50.000 5.23 0.00 39.93 2.12
230 231 2.626149 GGGAAGGCCTCTACCTCAACTA 60.626 54.545 5.23 0.00 39.93 2.24
231 232 1.574263 GGAAGGCCTCTACCTCAACT 58.426 55.000 5.23 0.00 39.93 3.16
232 233 0.542333 GGGAAGGCCTCTACCTCAAC 59.458 60.000 5.23 0.00 39.93 3.18
233 234 0.417841 AGGGAAGGCCTCTACCTCAA 59.582 55.000 5.23 0.00 39.93 3.02
234 235 0.417841 AAGGGAAGGCCTCTACCTCA 59.582 55.000 19.66 0.00 39.93 3.86
235 236 0.833949 CAAGGGAAGGCCTCTACCTC 59.166 60.000 19.66 7.95 39.93 3.85
236 237 0.119358 ACAAGGGAAGGCCTCTACCT 59.881 55.000 5.23 11.73 43.91 3.08
237 238 1.875488 TACAAGGGAAGGCCTCTACC 58.125 55.000 5.23 9.20 0.00 3.18
238 239 5.827326 ATAATACAAGGGAAGGCCTCTAC 57.173 43.478 5.23 0.03 0.00 2.59
239 240 6.387127 TGTATAATACAAGGGAAGGCCTCTA 58.613 40.000 5.23 0.00 35.38 2.43
240 241 5.224441 TGTATAATACAAGGGAAGGCCTCT 58.776 41.667 5.23 0.00 35.38 3.69
241 242 5.562298 TGTATAATACAAGGGAAGGCCTC 57.438 43.478 5.23 0.00 35.38 4.70
242 243 5.749032 GCATGTATAATACAAGGGAAGGCCT 60.749 44.000 0.00 0.00 42.76 5.19
243 244 4.459337 GCATGTATAATACAAGGGAAGGCC 59.541 45.833 0.00 0.00 42.76 5.19
244 245 4.154195 CGCATGTATAATACAAGGGAAGGC 59.846 45.833 0.00 0.00 41.10 4.35
245 246 4.695455 CCGCATGTATAATACAAGGGAAGG 59.305 45.833 0.00 0.00 41.10 3.46
246 247 4.695455 CCCGCATGTATAATACAAGGGAAG 59.305 45.833 1.64 0.00 46.09 3.46
247 248 4.647611 CCCGCATGTATAATACAAGGGAA 58.352 43.478 1.64 0.00 46.09 3.97
248 249 3.558321 GCCCGCATGTATAATACAAGGGA 60.558 47.826 15.61 0.00 46.09 4.20
249 250 2.747446 GCCCGCATGTATAATACAAGGG 59.253 50.000 2.64 2.64 46.02 3.95
250 251 3.188460 GTGCCCGCATGTATAATACAAGG 59.812 47.826 0.00 0.00 42.76 3.61
251 252 3.188460 GGTGCCCGCATGTATAATACAAG 59.812 47.826 0.00 0.00 42.76 3.16
252 253 3.142951 GGTGCCCGCATGTATAATACAA 58.857 45.455 0.00 0.00 42.76 2.41
253 254 2.104963 TGGTGCCCGCATGTATAATACA 59.895 45.455 0.00 0.00 43.80 2.29
254 255 2.742053 CTGGTGCCCGCATGTATAATAC 59.258 50.000 0.00 0.00 0.00 1.89
255 256 2.874052 GCTGGTGCCCGCATGTATAATA 60.874 50.000 0.00 0.00 0.00 0.98
256 257 1.896220 CTGGTGCCCGCATGTATAAT 58.104 50.000 0.00 0.00 0.00 1.28
257 258 0.817634 GCTGGTGCCCGCATGTATAA 60.818 55.000 0.00 0.00 0.00 0.98
258 259 1.227823 GCTGGTGCCCGCATGTATA 60.228 57.895 0.00 0.00 0.00 1.47
259 260 2.516930 GCTGGTGCCCGCATGTAT 60.517 61.111 0.00 0.00 0.00 2.29
260 261 4.027173 TGCTGGTGCCCGCATGTA 62.027 61.111 3.18 0.00 38.71 2.29
269 270 3.792588 TATTGATCGGGGTGCTGGTGC 62.793 57.143 0.00 0.00 40.20 5.01
270 271 0.180171 TATTGATCGGGGTGCTGGTG 59.820 55.000 0.00 0.00 0.00 4.17
271 272 0.180406 GTATTGATCGGGGTGCTGGT 59.820 55.000 0.00 0.00 0.00 4.00
272 273 0.180171 TGTATTGATCGGGGTGCTGG 59.820 55.000 0.00 0.00 0.00 4.85
273 274 2.146342 GATGTATTGATCGGGGTGCTG 58.854 52.381 0.00 0.00 0.00 4.41
274 275 1.270305 CGATGTATTGATCGGGGTGCT 60.270 52.381 0.00 0.00 41.29 4.40
275 276 1.148310 CGATGTATTGATCGGGGTGC 58.852 55.000 0.00 0.00 41.29 5.01
285 286 9.882996 ACAGATATTTTGCAATACGATGTATTG 57.117 29.630 20.10 20.10 37.82 1.90
287 288 9.494271 AGACAGATATTTTGCAATACGATGTAT 57.506 29.630 0.00 0.00 0.00 2.29
288 289 8.887036 AGACAGATATTTTGCAATACGATGTA 57.113 30.769 0.00 0.00 0.00 2.29
289 290 7.792374 AGACAGATATTTTGCAATACGATGT 57.208 32.000 0.00 1.57 0.00 3.06
290 291 8.764287 TGTAGACAGATATTTTGCAATACGATG 58.236 33.333 0.00 0.00 0.00 3.84
291 292 8.765219 GTGTAGACAGATATTTTGCAATACGAT 58.235 33.333 0.00 0.00 0.00 3.73
292 293 7.043656 CGTGTAGACAGATATTTTGCAATACGA 60.044 37.037 0.00 0.00 0.00 3.43
293 294 7.057402 CGTGTAGACAGATATTTTGCAATACG 58.943 38.462 0.00 0.00 0.00 3.06
294 295 7.223971 TCCGTGTAGACAGATATTTTGCAATAC 59.776 37.037 0.00 0.00 0.00 1.89
295 296 7.269316 TCCGTGTAGACAGATATTTTGCAATA 58.731 34.615 0.00 0.00 0.00 1.90
296 297 6.112734 TCCGTGTAGACAGATATTTTGCAAT 58.887 36.000 0.00 0.00 0.00 3.56
297 298 5.483811 TCCGTGTAGACAGATATTTTGCAA 58.516 37.500 0.00 0.00 0.00 4.08
298 299 5.079689 TCCGTGTAGACAGATATTTTGCA 57.920 39.130 0.00 0.00 0.00 4.08
299 300 4.508124 CCTCCGTGTAGACAGATATTTTGC 59.492 45.833 0.00 0.00 0.00 3.68
300 301 5.902681 TCCTCCGTGTAGACAGATATTTTG 58.097 41.667 0.00 0.00 0.00 2.44
301 302 6.732896 ATCCTCCGTGTAGACAGATATTTT 57.267 37.500 0.00 0.00 0.00 1.82
302 303 6.434652 CCTATCCTCCGTGTAGACAGATATTT 59.565 42.308 0.00 0.00 0.00 1.40
303 304 5.946972 CCTATCCTCCGTGTAGACAGATATT 59.053 44.000 0.00 0.00 0.00 1.28
304 305 5.251005 TCCTATCCTCCGTGTAGACAGATAT 59.749 44.000 0.00 0.00 0.00 1.63
305 306 4.596212 TCCTATCCTCCGTGTAGACAGATA 59.404 45.833 0.00 0.00 0.00 1.98
306 307 3.394940 TCCTATCCTCCGTGTAGACAGAT 59.605 47.826 0.00 0.00 0.00 2.90
307 308 2.775960 TCCTATCCTCCGTGTAGACAGA 59.224 50.000 0.00 0.00 0.00 3.41
308 309 3.210232 TCCTATCCTCCGTGTAGACAG 57.790 52.381 0.00 0.00 0.00 3.51
309 310 3.201487 TCTTCCTATCCTCCGTGTAGACA 59.799 47.826 0.00 0.00 0.00 3.41
310 311 3.818180 TCTTCCTATCCTCCGTGTAGAC 58.182 50.000 0.00 0.00 0.00 2.59
311 312 4.515028 TTCTTCCTATCCTCCGTGTAGA 57.485 45.455 0.00 0.00 0.00 2.59
312 313 5.793030 AATTCTTCCTATCCTCCGTGTAG 57.207 43.478 0.00 0.00 0.00 2.74
313 314 6.371278 AGTAATTCTTCCTATCCTCCGTGTA 58.629 40.000 0.00 0.00 0.00 2.90
314 315 5.209659 AGTAATTCTTCCTATCCTCCGTGT 58.790 41.667 0.00 0.00 0.00 4.49
315 316 5.279056 GGAGTAATTCTTCCTATCCTCCGTG 60.279 48.000 0.00 0.00 0.00 4.94
316 317 4.833938 GGAGTAATTCTTCCTATCCTCCGT 59.166 45.833 0.00 0.00 0.00 4.69
317 318 4.833380 TGGAGTAATTCTTCCTATCCTCCG 59.167 45.833 8.99 0.00 40.06 4.63
318 319 6.943899 ATGGAGTAATTCTTCCTATCCTCC 57.056 41.667 8.99 0.00 38.16 4.30
319 320 8.887264 TCTATGGAGTAATTCTTCCTATCCTC 57.113 38.462 8.99 0.00 0.00 3.71
320 321 9.676129 TTTCTATGGAGTAATTCTTCCTATCCT 57.324 33.333 8.99 0.00 0.00 3.24
325 326 9.676129 TCCTATTTCTATGGAGTAATTCTTCCT 57.324 33.333 8.99 0.04 0.00 3.36
334 335 9.261035 GGAATGAGATCCTATTTCTATGGAGTA 57.739 37.037 0.00 0.00 36.50 2.59
335 336 8.144862 GGAATGAGATCCTATTTCTATGGAGT 57.855 38.462 0.00 0.00 36.50 3.85
349 350 6.183360 CCATTTGGTTTGTAGGAATGAGATCC 60.183 42.308 0.00 0.00 39.96 3.36
350 351 6.681368 GCCATTTGGTTTGTAGGAATGAGATC 60.681 42.308 0.00 0.00 37.57 2.75
351 352 5.127682 GCCATTTGGTTTGTAGGAATGAGAT 59.872 40.000 0.00 0.00 37.57 2.75
352 353 4.462483 GCCATTTGGTTTGTAGGAATGAGA 59.538 41.667 0.00 0.00 37.57 3.27
353 354 4.463891 AGCCATTTGGTTTGTAGGAATGAG 59.536 41.667 0.00 0.00 37.57 2.90
354 355 4.415596 AGCCATTTGGTTTGTAGGAATGA 58.584 39.130 0.00 0.00 37.57 2.57
355 356 4.463891 AGAGCCATTTGGTTTGTAGGAATG 59.536 41.667 0.00 0.00 37.57 2.67
356 357 4.677182 AGAGCCATTTGGTTTGTAGGAAT 58.323 39.130 0.00 0.00 37.57 3.01
357 358 4.112634 AGAGCCATTTGGTTTGTAGGAA 57.887 40.909 0.00 0.00 37.57 3.36
358 359 3.806949 AGAGCCATTTGGTTTGTAGGA 57.193 42.857 0.00 0.00 37.57 2.94
359 360 5.710099 TCTTTAGAGCCATTTGGTTTGTAGG 59.290 40.000 0.00 0.00 37.57 3.18
360 361 6.817765 TCTTTAGAGCCATTTGGTTTGTAG 57.182 37.500 0.00 0.00 37.57 2.74
361 362 7.775053 AATCTTTAGAGCCATTTGGTTTGTA 57.225 32.000 0.00 0.00 37.57 2.41
362 363 6.670695 AATCTTTAGAGCCATTTGGTTTGT 57.329 33.333 0.00 0.00 37.57 2.83
363 364 7.967890 AAAATCTTTAGAGCCATTTGGTTTG 57.032 32.000 0.00 0.00 37.57 2.93
406 407 9.404077 AGGAATTCTCTAGGATTTCAATAGGAT 57.596 33.333 5.23 0.00 36.55 3.24
407 408 8.805145 AGGAATTCTCTAGGATTTCAATAGGA 57.195 34.615 5.23 0.00 36.55 2.94
408 409 8.100164 GGAGGAATTCTCTAGGATTTCAATAGG 58.900 40.741 5.23 0.00 42.10 2.57
409 410 8.654997 TGGAGGAATTCTCTAGGATTTCAATAG 58.345 37.037 5.23 0.00 42.10 1.73
410 411 8.567198 TGGAGGAATTCTCTAGGATTTCAATA 57.433 34.615 5.23 0.00 42.10 1.90
411 412 7.457380 TGGAGGAATTCTCTAGGATTTCAAT 57.543 36.000 5.23 5.88 42.10 2.57
412 413 6.891306 TGGAGGAATTCTCTAGGATTTCAA 57.109 37.500 5.23 0.00 42.10 2.69
413 414 6.891306 TTGGAGGAATTCTCTAGGATTTCA 57.109 37.500 5.23 0.00 42.10 2.69
414 415 6.262049 GCTTTGGAGGAATTCTCTAGGATTTC 59.738 42.308 5.23 0.00 42.10 2.17
415 416 6.125719 GCTTTGGAGGAATTCTCTAGGATTT 58.874 40.000 5.23 0.00 42.10 2.17
416 417 5.192522 TGCTTTGGAGGAATTCTCTAGGATT 59.807 40.000 5.23 0.00 42.10 3.01
417 418 4.723789 TGCTTTGGAGGAATTCTCTAGGAT 59.276 41.667 5.23 0.00 42.10 3.24
418 419 4.104086 TGCTTTGGAGGAATTCTCTAGGA 58.896 43.478 5.23 0.00 42.10 2.94
419 420 4.494091 TGCTTTGGAGGAATTCTCTAGG 57.506 45.455 5.23 0.00 42.10 3.02
420 421 5.356470 CCTTTGCTTTGGAGGAATTCTCTAG 59.644 44.000 5.23 0.00 42.10 2.43
421 422 5.014123 TCCTTTGCTTTGGAGGAATTCTCTA 59.986 40.000 5.23 0.00 42.10 2.43
422 423 4.085009 CCTTTGCTTTGGAGGAATTCTCT 58.915 43.478 5.23 0.63 42.10 3.10
423 424 4.082125 TCCTTTGCTTTGGAGGAATTCTC 58.918 43.478 5.23 1.17 41.71 2.87
424 425 4.085009 CTCCTTTGCTTTGGAGGAATTCT 58.915 43.478 5.23 0.00 44.44 2.40
425 426 4.446994 CTCCTTTGCTTTGGAGGAATTC 57.553 45.455 10.30 0.00 44.44 2.17
431 432 2.879103 TACCCTCCTTTGCTTTGGAG 57.121 50.000 10.94 10.94 46.91 3.86
432 433 2.378547 ACATACCCTCCTTTGCTTTGGA 59.621 45.455 0.00 0.00 0.00 3.53
433 434 2.807676 ACATACCCTCCTTTGCTTTGG 58.192 47.619 0.00 0.00 0.00 3.28
434 435 4.559153 CAAACATACCCTCCTTTGCTTTG 58.441 43.478 0.00 0.00 0.00 2.77
435 436 3.006859 GCAAACATACCCTCCTTTGCTTT 59.993 43.478 6.69 0.00 43.33 3.51
436 437 2.562738 GCAAACATACCCTCCTTTGCTT 59.437 45.455 6.69 0.00 43.33 3.91
437 438 2.171003 GCAAACATACCCTCCTTTGCT 58.829 47.619 6.69 0.00 43.33 3.91
438 439 1.204704 GGCAAACATACCCTCCTTTGC 59.795 52.381 5.57 5.57 45.07 3.68
439 440 2.524306 TGGCAAACATACCCTCCTTTG 58.476 47.619 0.00 0.00 0.00 2.77
440 441 2.990740 TGGCAAACATACCCTCCTTT 57.009 45.000 0.00 0.00 0.00 3.11
441 442 2.990740 TTGGCAAACATACCCTCCTT 57.009 45.000 0.00 0.00 0.00 3.36
442 443 2.990740 TTTGGCAAACATACCCTCCT 57.009 45.000 8.93 0.00 0.00 3.69
443 444 3.428862 CGATTTTGGCAAACATACCCTCC 60.429 47.826 13.10 0.00 0.00 4.30
444 445 3.192633 ACGATTTTGGCAAACATACCCTC 59.807 43.478 13.10 0.92 0.00 4.30
445 446 3.161866 ACGATTTTGGCAAACATACCCT 58.838 40.909 13.10 0.00 0.00 4.34
446 447 3.192633 AGACGATTTTGGCAAACATACCC 59.807 43.478 13.10 1.09 0.00 3.69
447 448 4.165779 CAGACGATTTTGGCAAACATACC 58.834 43.478 13.10 2.67 0.00 2.73
448 449 3.608073 GCAGACGATTTTGGCAAACATAC 59.392 43.478 13.10 3.96 0.00 2.39
449 450 3.505680 AGCAGACGATTTTGGCAAACATA 59.494 39.130 13.10 0.00 0.00 2.29
450 451 2.297033 AGCAGACGATTTTGGCAAACAT 59.703 40.909 13.10 9.48 0.00 2.71
451 452 1.680735 AGCAGACGATTTTGGCAAACA 59.319 42.857 13.10 4.79 0.00 2.83
452 453 2.422276 AGCAGACGATTTTGGCAAAC 57.578 45.000 13.10 1.00 0.00 2.93
453 454 3.568007 ACTTAGCAGACGATTTTGGCAAA 59.432 39.130 8.93 8.93 0.00 3.68
454 455 3.146066 ACTTAGCAGACGATTTTGGCAA 58.854 40.909 0.00 0.00 0.00 4.52
562 574 4.974721 AAGGGTGTTGGCCGCTGG 62.975 66.667 0.00 0.00 0.00 4.85
563 575 2.912025 AAAGGGTGTTGGCCGCTG 60.912 61.111 0.00 0.00 0.00 5.18
564 576 2.912025 CAAAGGGTGTTGGCCGCT 60.912 61.111 0.00 0.00 0.00 5.52
565 577 3.989787 CCAAAGGGTGTTGGCCGC 61.990 66.667 0.00 0.00 41.63 6.53
715 2112 4.498177 GGAAGAAGAGAAAACAAAAGCGCT 60.498 41.667 2.64 2.64 0.00 5.92
834 2250 4.443266 GCTGCCGTCTTCCTCGCT 62.443 66.667 0.00 0.00 0.00 4.93
879 2298 3.112263 AGTGGATTATCGAGTGGGGAAA 58.888 45.455 0.00 0.00 0.00 3.13
893 2312 3.641434 ATCAGCTAGTTGCAGTGGATT 57.359 42.857 0.97 0.00 45.94 3.01
969 2395 2.288091 CCGACTGATGATGAGAGCGATT 60.288 50.000 0.00 0.00 0.00 3.34
1137 2580 2.172372 GCTGCTCGCCATCACTGAG 61.172 63.158 0.00 0.00 0.00 3.35
1203 2646 1.269569 ACGTTGATGAAGCAGTCGTGA 60.270 47.619 0.00 0.00 32.34 4.35
1263 2717 8.545472 AGTGAAACCATAGCATTAGTAGGTAAA 58.455 33.333 0.00 0.00 37.80 2.01
1963 3448 3.195698 GCGAATGCCTCACCGTCC 61.196 66.667 0.00 0.00 33.98 4.79
2032 3517 0.616395 TCACCTCTACGGGCATTCCA 60.616 55.000 0.00 0.00 36.97 3.53
2044 3529 0.835543 AGCACTTGAGCCTCACCTCT 60.836 55.000 0.00 0.00 34.23 3.69
2203 3704 4.051237 TGTGTCGAACATTCTGTTGAGAG 58.949 43.478 0.00 0.00 41.28 3.20
2229 3730 2.159393 GCGCACACACATGTATTGGAAT 60.159 45.455 0.30 0.00 36.72 3.01
2234 3735 1.134487 GCGCGCACACACATGTATT 59.866 52.632 29.10 0.00 36.72 1.89
2248 3749 2.445453 AACACCATTTATTACGCGCG 57.555 45.000 30.96 30.96 0.00 6.86
2250 3751 6.797995 ACTTTACAAACACCATTTATTACGCG 59.202 34.615 3.53 3.53 0.00 6.01
2350 3873 8.494016 AGGGACGAAAAATATACTTTTCTCTG 57.506 34.615 15.25 5.02 41.26 3.35
2412 4096 2.099427 GGTGCACTTTGTCCGGTTTTAA 59.901 45.455 17.98 0.00 0.00 1.52
2438 4122 1.439679 AAATGACCGGTTTCGAGAGC 58.560 50.000 9.42 0.00 39.00 4.09
2479 4173 6.735130 TCGGATGTACTGTTCATACATAGTG 58.265 40.000 9.83 0.00 42.11 2.74
2482 4176 7.519032 TCATCGGATGTACTGTTCATACATA 57.481 36.000 17.01 0.00 42.11 2.29
2487 4181 5.084818 TGTTCATCGGATGTACTGTTCAT 57.915 39.130 22.71 0.00 32.55 2.57
2522 4216 9.994432 CAGAGTTTTTCGATATCTTTTGCTATT 57.006 29.630 0.34 0.00 0.00 1.73
2523 4217 9.383519 TCAGAGTTTTTCGATATCTTTTGCTAT 57.616 29.630 0.34 0.00 0.00 2.97
2524 4218 8.771920 TCAGAGTTTTTCGATATCTTTTGCTA 57.228 30.769 0.34 0.00 0.00 3.49
2525 4219 7.672983 TCAGAGTTTTTCGATATCTTTTGCT 57.327 32.000 0.34 0.00 0.00 3.91
2526 4220 8.728088 TTTCAGAGTTTTTCGATATCTTTTGC 57.272 30.769 0.34 0.00 0.00 3.68
2534 4234 9.567848 GGCATAAAATTTCAGAGTTTTTCGATA 57.432 29.630 0.00 0.00 0.00 2.92
2544 4261 7.576236 CGTACCTATGGCATAAAATTTCAGAG 58.424 38.462 8.79 0.00 0.00 3.35
2593 4323 0.790814 GCTCCTCGAACTTCCAAACG 59.209 55.000 0.00 0.00 0.00 3.60
2634 4365 9.909644 TTTACTGTTCACTTCAGAGTAGATTAC 57.090 33.333 0.00 0.00 36.81 1.89
2807 4619 4.043073 GGTCGTGGCAATAAAAACGAAAA 58.957 39.130 0.00 0.00 45.58 2.29
3060 6695 4.218852 TGACCACGTGTGAATAGTACATCA 59.781 41.667 15.65 0.30 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.