AutoCloner

Multiple sequence alignment - TraesCS7B01G237800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G237800	chr7B	100.000	2725	0	0	1	2725	443172809	443170085	0.000000e+00	5033.0
1	TraesCS7B01G237800	chr7D	89.640	1390	71	21	592	1928	425438220	425436851	0.000000e+00	1701.0
2	TraesCS7B01G237800	chr7D	89.091	220	16	5	1181	1399	461649274	461649486	1.610000e-67	267.0
3	TraesCS7B01G237800	chr7D	86.905	84	4	2	1158	1241	461649199	461649275	1.340000e-13	87.9
4	TraesCS7B01G237800	chr6D	93.508	801	40	10	1928	2724	52896155	52895363	0.000000e+00	1181.0
5	TraesCS7B01G237800	chr6D	93.516	802	36	11	1929	2724	421585279	421584488	0.000000e+00	1179.0
6	TraesCS7B01G237800	chr6D	93.250	800	41	10	1928	2724	33237373	33238162	0.000000e+00	1166.0
7	TraesCS7B01G237800	chr6D	92.884	801	45	7	1928	2724	148674574	148675366	0.000000e+00	1153.0
8	TraesCS7B01G237800	chr6D	86.175	217	16	5	1184	1399	326416479	326416276	3.530000e-54	222.0
9	TraesCS7B01G237800	chr2B	93.408	804	40	12	1929	2725	236668692	236667895	0.000000e+00	1179.0
10	TraesCS7B01G237800	chr2B	95.088	570	27	1	5	573	25740381	25740950	0.000000e+00	896.0
11	TraesCS7B01G237800	chr1D	93.134	801	46	9	1928	2724	386785296	386784501	0.000000e+00	1166.0
12	TraesCS7B01G237800	chr2D	93.142	802	42	9	1928	2724	363459338	363458545	0.000000e+00	1164.0
13	TraesCS7B01G237800	chr2D	92.777	803	44	10	1929	2724	294703195	294702400	0.000000e+00	1149.0
14	TraesCS7B01G237800	chr2D	95.222	586	24	3	1	582	610245436	610246021	0.000000e+00	924.0
15	TraesCS7B01G237800	chr3D	92.831	809	42	12	1922	2724	323472125	323472923	0.000000e+00	1158.0
16	TraesCS7B01G237800	chr3D	95.130	575	27	1	5	578	586598417	586598991	0.000000e+00	905.0
17	TraesCS7B01G237800	chr7A	84.349	1099	74	33	592	1641	507813303	507814352	0.000000e+00	987.0
18	TraesCS7B01G237800	chr7A	93.220	59	3	1	1671	1729	507814358	507814415	4.830000e-13	86.1
19	TraesCS7B01G237800	chr4B	95.478	575	25	1	5	578	510842277	510842851	0.000000e+00	917.0
20	TraesCS7B01G237800	chr4B	94.397	589	27	3	1	588	44922258	44921675	0.000000e+00	900.0
21	TraesCS7B01G237800	chr3B	95.478	575	24	2	5	578	52192859	52193432	0.000000e+00	917.0
22	TraesCS7B01G237800	chr6B	95.304	575	26	1	5	578	132111401	132110827	0.000000e+00	911.0
23	TraesCS7B01G237800	chr6B	94.158	582	33	1	5	585	283227834	283228415	0.000000e+00	885.0
24	TraesCS7B01G237800	chr6B	82.018	228	24	9	1184	1397	258860328	258860104	7.750000e-41	178.0
25	TraesCS7B01G237800	chr6B	83.908	87	7	2	1158	1244	258860406	258860327	2.910000e-10	76.8
26	TraesCS7B01G237800	chr1B	94.957	575	28	1	5	578	566121686	566122260	0.000000e+00	900.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G237800	chr7B	443170085	443172809	2724	True	5033.00	5033	100.0000	1	2725	1	chr7B.!!$R1	2724
1	TraesCS7B01G237800	chr7D	425436851	425438220	1369	True	1701.00	1701	89.6400	592	1928	1	chr7D.!!$R1	1336
2	TraesCS7B01G237800	chr6D	52895363	52896155	792	True	1181.00	1181	93.5080	1928	2724	1	chr6D.!!$R1	796
3	TraesCS7B01G237800	chr6D	421584488	421585279	791	True	1179.00	1179	93.5160	1929	2724	1	chr6D.!!$R3	795
4	TraesCS7B01G237800	chr6D	33237373	33238162	789	False	1166.00	1166	93.2500	1928	2724	1	chr6D.!!$F1	796
5	TraesCS7B01G237800	chr6D	148674574	148675366	792	False	1153.00	1153	92.8840	1928	2724	1	chr6D.!!$F2	796
6	TraesCS7B01G237800	chr2B	236667895	236668692	797	True	1179.00	1179	93.4080	1929	2725	1	chr2B.!!$R1	796
7	TraesCS7B01G237800	chr2B	25740381	25740950	569	False	896.00	896	95.0880	5	573	1	chr2B.!!$F1	568
8	TraesCS7B01G237800	chr1D	386784501	386785296	795	True	1166.00	1166	93.1340	1928	2724	1	chr1D.!!$R1	796
9	TraesCS7B01G237800	chr2D	363458545	363459338	793	True	1164.00	1164	93.1420	1928	2724	1	chr2D.!!$R2	796
10	TraesCS7B01G237800	chr2D	294702400	294703195	795	True	1149.00	1149	92.7770	1929	2724	1	chr2D.!!$R1	795
11	TraesCS7B01G237800	chr2D	610245436	610246021	585	False	924.00	924	95.2220	1	582	1	chr2D.!!$F1	581
12	TraesCS7B01G237800	chr3D	323472125	323472923	798	False	1158.00	1158	92.8310	1922	2724	1	chr3D.!!$F1	802
13	TraesCS7B01G237800	chr3D	586598417	586598991	574	False	905.00	905	95.1300	5	578	1	chr3D.!!$F2	573
14	TraesCS7B01G237800	chr7A	507813303	507814415	1112	False	536.55	987	88.7845	592	1729	2	chr7A.!!$F1	1137
15	TraesCS7B01G237800	chr4B	510842277	510842851	574	False	917.00	917	95.4780	5	578	1	chr4B.!!$F1	573
16	TraesCS7B01G237800	chr4B	44921675	44922258	583	True	900.00	900	94.3970	1	588	1	chr4B.!!$R1	587
17	TraesCS7B01G237800	chr3B	52192859	52193432	573	False	917.00	917	95.4780	5	578	1	chr3B.!!$F1	573
18	TraesCS7B01G237800	chr6B	132110827	132111401	574	True	911.00	911	95.3040	5	578	1	chr6B.!!$R1	573
19	TraesCS7B01G237800	chr6B	283227834	283228415	581	False	885.00	885	94.1580	5	585	1	chr6B.!!$F1	580
20	TraesCS7B01G237800	chr1B	566121686	566122260	574	False	900.00	900	94.9570	5	578	1	chr1B.!!$F1	573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
117	118	0.255318	CTGGGCAAAGCAGGATCTCT	59.745	55.0	0.00	0.0	0.00	3.10	F
1622	1690	0.255318	ACTACGACTCGGACCTCCAT	59.745	55.0	2.98	0.0	35.14	3.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1716	1784	0.107993	CAGGTCGGCACTCACATGAT	60.108	55.0	0.0	0.0	0.0	2.45	R
2442	2548	2.209933	AACTAGGGAAGGGGGAGGGG	62.210	65.0	0.0	0.0	0.0	4.79	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	42	0.882927	CGCGAAAAGTGTCCCTTCCA	60.883	55.000	0.00	0.00	31.27	3.53
117	118	0.255318	CTGGGCAAAGCAGGATCTCT	59.745	55.000	0.00	0.00	0.00	3.10
176	180	3.855524	GCAACAAATCGTACCAACAAGGG	60.856	47.826	0.00	0.00	43.89	3.95
311	315	1.412710	CAATACCGCTGGCTCCTAGAA	59.587	52.381	0.00	0.00	0.00	2.10
312	316	1.789523	ATACCGCTGGCTCCTAGAAA	58.210	50.000	0.00	0.00	0.00	2.52
450	454	0.680061	GTGAACAGACCCGAGGTTCT	59.320	55.000	0.00	0.00	41.07	3.01
491	495	1.749638	GGCCGACGAAGAGAGAGGA	60.750	63.158	0.00	0.00	0.00	3.71
565	569	1.744114	GCCTCGAGGGATCCAACTTTC	60.744	57.143	32.06	7.56	37.23	2.62
567	571	0.535335	TCGAGGGATCCAACTTTCCG	59.465	55.000	15.23	5.77	32.48	4.30
608	613	6.870971	TTTGTCGGTCAGCTAAATTAACTT	57.129	33.333	0.00	0.00	0.00	2.66
614	619	5.584649	CGGTCAGCTAAATTAACTTGATGGA	59.415	40.000	0.00	0.00	0.00	3.41
650	655	1.793714	CGCAAAACTGTCACGCAACTT	60.794	47.619	0.00	0.00	0.00	2.66
669	674	2.046023	CAGGCCATTCACCGCTCA	60.046	61.111	5.01	0.00	0.00	4.26
686	691	2.125912	AGCGTCGTCATGGCAGTC	60.126	61.111	0.00	0.00	0.00	3.51
693	698	1.517257	GTCATGGCAGTCCGAGACG	60.517	63.158	0.00	0.00	37.67	4.18
743	765	1.402613	TCATGATGCAGCACCGAAATG	59.597	47.619	6.89	0.00	0.00	2.32
748	770	0.522626	TGCAGCACCGAAATGACATG	59.477	50.000	0.00	0.00	0.00	3.21
749	771	0.523072	GCAGCACCGAAATGACATGT	59.477	50.000	0.00	0.00	0.00	3.21
826	853	5.140454	TGCAGCTGGTAGTAGATATCTTCA	58.860	41.667	17.12	2.06	0.00	3.02
827	854	5.242615	TGCAGCTGGTAGTAGATATCTTCAG	59.757	44.000	17.12	11.60	0.00	3.02
851	878	0.389166	CCACGAGCTGACTTGACCTC	60.389	60.000	0.00	0.00	0.00	3.85
929	957	3.928754	TCCCTACATTGTCCTAGCAGAT	58.071	45.455	0.00	0.00	0.00	2.90
935	963	3.771479	ACATTGTCCTAGCAGATCACTCA	59.229	43.478	0.00	0.00	0.00	3.41
964	992	1.621992	AGGAGCTCGACTTTGTCAGA	58.378	50.000	7.83	0.00	32.09	3.27
975	1003	1.728971	CTTTGTCAGACTCACATCGCC	59.271	52.381	1.31	0.00	0.00	5.54
1083	1121	7.449704	ACTGCTAAATCCTTGAGAAATCTTGTT	59.550	33.333	0.00	0.00	0.00	2.83
1175	1213	1.629043	TCTCAGGCTTCAAGGTACGT	58.371	50.000	0.00	0.00	0.00	3.57
1176	1214	2.799017	TCTCAGGCTTCAAGGTACGTA	58.201	47.619	0.00	0.00	0.00	3.57
1177	1215	2.490903	TCTCAGGCTTCAAGGTACGTAC	59.509	50.000	17.56	17.56	0.00	3.67
1178	1216	1.200716	TCAGGCTTCAAGGTACGTACG	59.799	52.381	18.98	15.01	0.00	3.67
1179	1217	1.068055	CAGGCTTCAAGGTACGTACGT	60.068	52.381	25.98	25.98	0.00	3.57
1180	1218	2.162208	CAGGCTTCAAGGTACGTACGTA	59.838	50.000	23.60	23.60	0.00	3.57
1227	1279	6.117488	TCGTGATTGTGGTACTATCAGACTA	58.883	40.000	6.38	0.00	40.08	2.59
1228	1280	6.260271	TCGTGATTGTGGTACTATCAGACTAG	59.740	42.308	6.38	0.00	40.08	2.57
1233	1285	5.506708	TGTGGTACTATCAGACTAGCTTGA	58.493	41.667	1.04	0.00	0.00	3.02
1235	1287	5.357314	GTGGTACTATCAGACTAGCTTGACA	59.643	44.000	1.04	0.00	0.00	3.58
1247	1299	3.526931	AGCTTGACATACAGTACGCAT	57.473	42.857	0.00	0.00	0.00	4.73
1454	1516	4.778415	CACGCCTACGCTCACGCT	62.778	66.667	0.00	0.00	45.53	5.07
1472	1537	1.787057	CTCAGCCGGCCTACTACTCG	61.787	65.000	26.15	0.16	0.00	4.18
1622	1690	0.255318	ACTACGACTCGGACCTCCAT	59.745	55.000	2.98	0.00	35.14	3.41
1645	1713	1.945354	TACTACCACGAGCAGCAGGC	61.945	60.000	0.00	0.00	45.30	4.85
1729	1797	0.393402	TGCTCCATCATGTGAGTGCC	60.393	55.000	10.02	0.00	0.00	5.01
1730	1798	1.434622	GCTCCATCATGTGAGTGCCG	61.435	60.000	10.02	0.00	0.00	5.69
1732	1800	0.108186	TCCATCATGTGAGTGCCGAC	60.108	55.000	0.00	0.00	0.00	4.79
1769	1865	3.499537	TCGTGTACATACGTCTCTTGTGT	59.500	43.478	0.00	0.00	44.06	3.72
1780	1876	6.184580	ACGTCTCTTGTGTATAGTTCTCTG	57.815	41.667	0.00	0.00	0.00	3.35
1804	1900	4.202357	TGTCAAGGTGCTCTGTTAAGACAT	60.202	41.667	0.00	0.00	34.72	3.06
1850	1946	6.379988	AGAAATTTATGCAAGTTATCCGGGTT	59.620	34.615	0.00	0.00	0.00	4.11
1851	1947	6.538945	AATTTATGCAAGTTATCCGGGTTT	57.461	33.333	0.00	0.00	0.00	3.27
1852	1948	5.986501	TTTATGCAAGTTATCCGGGTTTT	57.013	34.783	0.00	0.00	0.00	2.43
1853	1949	5.986501	TTATGCAAGTTATCCGGGTTTTT	57.013	34.783	0.00	0.00	0.00	1.94
1899	1995	3.366985	CGGAGAAAAAGGGTACAAATGGC	60.367	47.826	0.00	0.00	0.00	4.40
1908	2004	1.438651	GTACAAATGGCAGACGCTCA	58.561	50.000	0.00	0.00	38.60	4.26
1919	2015	2.666026	CAGACGCTCATATACACGCAT	58.334	47.619	0.00	0.00	0.00	4.73
2058	2157	1.058695	CGGAAGCGTTATGACAACGTC	59.941	52.381	10.77	2.33	44.69	4.34
2059	2158	2.063266	GGAAGCGTTATGACAACGTCA	58.937	47.619	10.77	0.00	46.90	4.35
2083	2182	4.801891	TGATGTAGTTGTACGTCTTCACC	58.198	43.478	0.00	0.00	43.23	4.02
2094	2193	1.469251	CGTCTTCACCATCGACCGATT	60.469	52.381	1.72	0.00	31.62	3.34
2170	2269	0.526211	TCACGAACTCACGATCCAGG	59.474	55.000	0.00	0.00	37.03	4.45
2258	2357	4.693532	CTTCGCCTAAGCACCACA	57.306	55.556	0.00	0.00	39.83	4.17
2440	2546	3.225608	CCACCGGGAGTAGGATTCT	57.774	57.895	6.32	0.00	35.59	2.40
2441	2547	1.041437	CCACCGGGAGTAGGATTCTC	58.959	60.000	6.32	0.00	35.59	2.87
2491	2600	0.326143	AGAAGGAAGGGGGAGAGAGC	60.326	60.000	0.00	0.00	0.00	4.09
2533	2646	1.838077	CCCCCTCCTAGTTCAATTCGT	59.162	52.381	0.00	0.00	0.00	3.85
2553	2666	4.787280	CAGAGGGAGAGGGGGCGT	62.787	72.222	0.00	0.00	0.00	5.68
2605	2718	2.443255	CTCCACTATGGCCCAATAAGGT	59.557	50.000	0.00	0.00	37.47	3.50

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	42	3.757270	TGACTCGAGTTCTCTTCCTTCT	58.243	45.455	21.08	0.00	0.00	2.85
117	118	2.435410	CTGCGCTGATGCTGGTGA	60.435	61.111	9.73	0.00	36.97	4.02
294	298	1.563924	TTTTCTAGGAGCCAGCGGTA	58.436	50.000	0.00	0.00	0.00	4.02
365	369	3.882013	CGTTGCGGTGGTGTTGCA	61.882	61.111	0.00	0.00	36.72	4.08
588	593	6.456988	CCATCAAGTTAATTTAGCTGACCGAC	60.457	42.308	0.00	0.00	0.00	4.79
589	594	5.584649	CCATCAAGTTAATTTAGCTGACCGA	59.415	40.000	0.00	0.00	0.00	4.69
590	595	5.584649	TCCATCAAGTTAATTTAGCTGACCG	59.415	40.000	0.00	0.00	0.00	4.79
599	604	7.047891	TGTAGAGCGATCCATCAAGTTAATTT	58.952	34.615	0.00	0.00	0.00	1.82
650	655	3.329542	GAGCGGTGAATGGCCTGGA	62.330	63.158	3.32	0.00	0.00	3.86
669	674	2.125912	GACTGCCATGACGACGCT	60.126	61.111	0.00	0.00	0.00	5.07
686	691	1.576246	CGTCATAACGTTTCGTCTCGG	59.424	52.381	5.91	0.00	43.94	4.63
743	765	8.234546	AGTGGACGTTTTATTATTTGACATGTC	58.765	33.333	19.27	19.27	0.00	3.06
748	770	7.532884	GTGACAGTGGACGTTTTATTATTTGAC	59.467	37.037	0.00	0.00	0.00	3.18
749	771	7.442969	AGTGACAGTGGACGTTTTATTATTTGA	59.557	33.333	0.00	0.00	0.00	2.69
761	783	6.073385	CGTATATATGTAGTGACAGTGGACGT	60.073	42.308	0.00	0.00	39.50	4.34
763	785	6.084925	GCGTATATATGTAGTGACAGTGGAC	58.915	44.000	3.92	0.00	39.50	4.02
827	854	1.135139	TCAAGTCAGCTCGTGGATAGC	59.865	52.381	0.00	0.00	40.40	2.97
851	878	8.040132	TGACAAAGGCCTGGATATTTATTTTTG	58.960	33.333	5.69	4.54	0.00	2.44
929	957	4.411927	AGCTCCTTTCTAACTCTGAGTGA	58.588	43.478	11.71	2.36	0.00	3.41
935	963	3.692690	AGTCGAGCTCCTTTCTAACTCT	58.307	45.455	8.47	0.00	0.00	3.24
964	992	0.396417	AGAGGCTAGGCGATGTGAGT	60.396	55.000	11.10	0.00	0.00	3.41
975	1003	2.433604	TGATTGCTCTTGGAGAGGCTAG	59.566	50.000	7.05	0.00	42.54	3.42
1055	1093	8.394121	CAAGATTTCTCAAGGATTTAGCAGTAC	58.606	37.037	0.00	0.00	0.00	2.73
1083	1121	1.291184	CTCCACGATCTGCACGCAAA	61.291	55.000	0.00	0.00	0.00	3.68
1135	1173	1.371558	GGCCTTCCTCACGTTGTCT	59.628	57.895	0.00	0.00	0.00	3.41
1175	1213	5.743636	AATTCCTTTGGTGGTACTACGTA	57.256	39.130	3.03	0.00	0.00	3.57
1176	1214	4.628963	AATTCCTTTGGTGGTACTACGT	57.371	40.909	3.03	0.00	0.00	3.57
1177	1215	5.243207	AGAAATTCCTTTGGTGGTACTACG	58.757	41.667	3.03	0.00	0.00	3.51
1178	1216	6.235664	TGAGAAATTCCTTTGGTGGTACTAC	58.764	40.000	0.00	0.00	0.00	2.73
1179	1217	6.442541	TGAGAAATTCCTTTGGTGGTACTA	57.557	37.500	0.00	0.00	0.00	1.82
1180	1218	5.319043	TGAGAAATTCCTTTGGTGGTACT	57.681	39.130	0.00	0.00	0.00	2.73
1227	1279	3.190079	CATGCGTACTGTATGTCAAGCT	58.810	45.455	8.69	0.00	36.09	3.74
1228	1280	2.285220	CCATGCGTACTGTATGTCAAGC	59.715	50.000	8.69	0.00	38.86	4.01
1233	1285	3.288092	TCTCTCCATGCGTACTGTATGT	58.712	45.455	8.69	0.00	38.86	2.29
1235	1287	3.566322	GTCTCTCTCCATGCGTACTGTAT	59.434	47.826	0.00	0.00	0.00	2.29
1247	1299	2.907458	TCAGGACATGTCTCTCTCCA	57.093	50.000	24.50	0.99	0.00	3.86
1354	1410	2.037136	CGCAGCACCTTCTTCTGGG	61.037	63.158	0.00	0.00	35.11	4.45
1430	1486	2.202703	GCGTAGGCGTGGTGGTAG	60.203	66.667	0.00	0.00	40.81	3.18
1454	1516	1.822613	CGAGTAGTAGGCCGGCTGA	60.823	63.158	28.56	12.03	0.00	4.26
1622	1690	1.601419	GCTGCTCGTGGTAGTACCCA	61.601	60.000	16.91	6.01	37.50	4.51
1716	1784	0.107993	CAGGTCGGCACTCACATGAT	60.108	55.000	0.00	0.00	0.00	2.45
1729	1797	3.320879	ATGCAGAGGCCACAGGTCG	62.321	63.158	5.01	0.00	40.13	4.79
1730	1798	1.451028	GATGCAGAGGCCACAGGTC	60.451	63.158	5.01	0.00	40.13	3.85
1732	1800	2.513204	CGATGCAGAGGCCACAGG	60.513	66.667	5.01	0.00	40.13	4.00
1769	1865	4.772624	AGCACCTTGACACAGAGAACTATA	59.227	41.667	0.00	0.00	0.00	1.31
1780	1876	3.495001	GTCTTAACAGAGCACCTTGACAC	59.505	47.826	0.00	0.00	0.00	3.67
1804	1900	5.136828	TCTTGTTCCAAACATAGGCTTCAA	58.863	37.500	0.00	0.00	41.79	2.69
1854	1950	9.434420	TCCGGAGAAAAACTTTCGTATATTAAA	57.566	29.630	0.00	0.00	0.00	1.52
1875	1971	3.860968	TTTGTACCCTTTTTCTCCGGA	57.139	42.857	2.93	2.93	0.00	5.14
1876	1972	3.192633	CCATTTGTACCCTTTTTCTCCGG	59.807	47.826	0.00	0.00	0.00	5.14
1877	1973	3.366985	GCCATTTGTACCCTTTTTCTCCG	60.367	47.826	0.00	0.00	0.00	4.63
1879	1975	4.522789	TCTGCCATTTGTACCCTTTTTCTC	59.477	41.667	0.00	0.00	0.00	2.87
1885	1981	1.821216	CGTCTGCCATTTGTACCCTT	58.179	50.000	0.00	0.00	0.00	3.95
1887	1983	0.676782	AGCGTCTGCCATTTGTACCC	60.677	55.000	0.00	0.00	44.31	3.69
1888	1984	0.727398	GAGCGTCTGCCATTTGTACC	59.273	55.000	0.00	0.00	44.31	3.34
1899	1995	2.119671	TGCGTGTATATGAGCGTCTG	57.880	50.000	0.00	0.00	0.00	3.51
1908	2004	5.515797	ACAGAGTGTACATGCGTGTATAT	57.484	39.130	21.19	10.59	42.43	0.86
1919	2015	1.069513	CGTTCCCCAACAGAGTGTACA	59.930	52.381	0.00	0.00	32.14	2.90
2058	2157	6.183360	GGTGAAGACGTACAACTACATCAATG	60.183	42.308	0.00	0.00	0.00	2.82
2059	2158	5.867716	GGTGAAGACGTACAACTACATCAAT	59.132	40.000	0.00	0.00	0.00	2.57
2070	2169	1.200716	GGTCGATGGTGAAGACGTACA	59.799	52.381	0.00	0.00	35.87	2.90
2083	2182	4.563337	TTGGTACTAGAATCGGTCGATG	57.437	45.455	6.63	0.00	34.70	3.84
2151	2250	0.526211	CCTGGATCGTGAGTTCGTGA	59.474	55.000	0.00	0.00	0.00	4.35
2170	2269	1.404035	GAACTCTCCCTCGAAGCTCTC	59.596	57.143	0.00	0.00	0.00	3.20
2258	2357	4.982241	AATCCACCTCGGTCATATCATT	57.018	40.909	0.00	0.00	35.57	2.57
2347	2450	3.905591	CCACTCCTTTATATACGGGGGAA	59.094	47.826	6.96	0.00	0.00	3.97
2440	2546	3.982131	TAGGGAAGGGGGAGGGGGA	62.982	68.421	0.00	0.00	0.00	4.81
2441	2547	3.382864	TAGGGAAGGGGGAGGGGG	61.383	72.222	0.00	0.00	0.00	5.40
2442	2548	2.209933	AACTAGGGAAGGGGGAGGGG	62.210	65.000	0.00	0.00	0.00	4.79
2525	2638	3.024547	CTCTCCCTCTGGTACGAATTGA	58.975	50.000	0.00	0.00	0.00	2.57
2533	2646	3.023045	GCCCCCTCTCCCTCTGGTA	62.023	68.421	0.00	0.00	0.00	3.25
2657	2771	5.732633	TCGGAATAGTTTCGGGTGAAATTA	58.267	37.500	0.00	0.00	45.31	1.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.