Multiple sequence alignment - TraesCS7B01G237500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G237500 chr7B 100.000 2609 0 0 1577 4185 442372027 442374635 0.000000e+00 4819
1 TraesCS7B01G237500 chr7B 100.000 1374 0 0 1 1374 442370451 442371824 0.000000e+00 2538
2 TraesCS7B01G237500 chr7B 94.422 251 14 0 2 252 244105385 244105635 1.820000e-103 387
3 TraesCS7B01G237500 chr7D 95.632 2129 78 8 1577 3703 424706360 424708475 0.000000e+00 3402
4 TraesCS7B01G237500 chr7D 82.762 1108 126 41 298 1374 424705157 424706230 0.000000e+00 928
5 TraesCS7B01G237500 chr7D 87.805 410 39 8 3781 4185 21031253 21031656 1.760000e-128 470
6 TraesCS7B01G237500 chr7A 95.387 1279 46 7 2433 3703 508578453 508577180 0.000000e+00 2023
7 TraesCS7B01G237500 chr7A 96.678 873 29 0 1577 2449 508580201 508579329 0.000000e+00 1452
8 TraesCS7B01G237500 chr7A 94.006 317 10 4 869 1185 508581133 508580826 4.900000e-129 472
9 TraesCS7B01G237500 chr6D 88.616 448 50 1 3739 4185 316627852 316628299 1.020000e-150 544
10 TraesCS7B01G237500 chr6D 94.024 251 15 0 1 251 211594435 211594685 8.490000e-102 381
11 TraesCS7B01G237500 chr3A 87.013 462 52 8 3726 4185 564418118 564417663 8.020000e-142 514
12 TraesCS7B01G237500 chr4D 86.780 469 47 13 3721 4185 101392433 101392890 3.730000e-140 508
13 TraesCS7B01G237500 chr4D 95.142 247 10 2 2 248 426279600 426279356 5.070000e-104 388
14 TraesCS7B01G237500 chr5D 86.492 459 55 7 3727 4185 360909660 360910111 8.080000e-137 497
15 TraesCS7B01G237500 chr5D 86.404 456 49 9 3740 4185 498647375 498647827 1.750000e-133 486
16 TraesCS7B01G237500 chr2B 87.952 415 45 5 3768 4180 362657088 362657499 6.290000e-133 484
17 TraesCS7B01G237500 chr2B 95.528 246 11 0 3 248 202602713 202602468 1.090000e-105 394
18 TraesCS7B01G237500 chr1D 86.073 438 47 11 3727 4157 483355639 483355209 3.810000e-125 459
19 TraesCS7B01G237500 chr1B 85.647 425 55 6 3742 4163 361444036 361443615 3.840000e-120 442
20 TraesCS7B01G237500 chr4B 95.565 248 11 0 2 249 386367395 386367148 8.430000e-107 398
21 TraesCS7B01G237500 chr3B 95.161 248 12 0 2 249 66557678 66557431 3.920000e-105 392
22 TraesCS7B01G237500 chr6B 95.161 248 11 1 2 249 89088081 89088327 1.410000e-104 390
23 TraesCS7B01G237500 chr6B 95.492 244 11 0 2 245 500181204 500181447 1.410000e-104 390
24 TraesCS7B01G237500 chr3D 93.077 260 16 2 2 261 496491703 496491960 3.050000e-101 379


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G237500 chr7B 442370451 442374635 4184 False 3678.500000 4819 100.000 1 4185 2 chr7B.!!$F2 4184
1 TraesCS7B01G237500 chr7D 424705157 424708475 3318 False 2165.000000 3402 89.197 298 3703 2 chr7D.!!$F2 3405
2 TraesCS7B01G237500 chr7A 508577180 508581133 3953 True 1315.666667 2023 95.357 869 3703 3 chr7A.!!$R1 2834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
869 928 0.034059 CCTATTACAGCTGGGCCGAG 59.966 60.000 19.93 10.99 0.00 4.63 F
923 982 0.407918 CCTAGCCTAGCCTAGCCTCT 59.592 60.000 2.10 0.00 34.74 3.69 F
2009 2374 1.227527 CCAGAACAGGCGTGTCACA 60.228 57.895 13.21 0.00 35.08 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1849 2214 0.105778 CGAGATCCTTCTCCCTTGGC 59.894 60.0 0.0 0.0 44.76 4.52 R
2437 3694 0.251297 CAATGTTCCCTCCACTGGCA 60.251 55.0 0.0 0.0 0.00 4.92 R
3943 5208 0.030101 GAGGCGATGAGGAAGACGAG 59.970 60.0 0.0 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.935240 TTCTCCTAATGATATGATCCCGTT 57.065 37.500 0.00 0.00 0.00 4.44
26 27 6.531503 TCTCCTAATGATATGATCCCGTTC 57.468 41.667 0.00 0.00 0.00 3.95
27 28 6.016555 TCTCCTAATGATATGATCCCGTTCA 58.983 40.000 0.00 0.00 0.00 3.18
28 29 6.669591 TCTCCTAATGATATGATCCCGTTCAT 59.330 38.462 0.00 0.00 39.60 2.57
29 30 6.878317 TCCTAATGATATGATCCCGTTCATC 58.122 40.000 0.00 0.00 37.51 2.92
30 31 6.440328 TCCTAATGATATGATCCCGTTCATCA 59.560 38.462 0.00 0.00 37.51 3.07
31 32 7.038373 TCCTAATGATATGATCCCGTTCATCAA 60.038 37.037 0.00 0.00 37.51 2.57
32 33 7.607607 CCTAATGATATGATCCCGTTCATCAAA 59.392 37.037 0.00 0.00 37.51 2.69
33 34 9.170734 CTAATGATATGATCCCGTTCATCAAAT 57.829 33.333 0.00 0.00 37.51 2.32
34 35 6.806388 TGATATGATCCCGTTCATCAAATG 57.194 37.500 0.00 0.00 37.51 2.32
35 36 6.532826 TGATATGATCCCGTTCATCAAATGA 58.467 36.000 0.00 0.00 37.51 2.57
36 37 6.427853 TGATATGATCCCGTTCATCAAATGAC 59.572 38.462 0.00 0.00 39.39 3.06
37 38 3.949132 TGATCCCGTTCATCAAATGACA 58.051 40.909 0.00 0.00 39.39 3.58
38 39 4.331108 TGATCCCGTTCATCAAATGACAA 58.669 39.130 0.00 0.00 39.39 3.18
39 40 4.155826 TGATCCCGTTCATCAAATGACAAC 59.844 41.667 0.00 0.00 39.39 3.32
40 41 2.482336 TCCCGTTCATCAAATGACAACG 59.518 45.455 16.77 16.77 40.53 4.10
41 42 2.241722 CCGTTCATCAAATGACAACGC 58.758 47.619 17.69 0.00 40.00 4.84
42 43 2.350293 CCGTTCATCAAATGACAACGCA 60.350 45.455 17.69 0.00 40.00 5.24
43 44 3.491356 CGTTCATCAAATGACAACGCAT 58.509 40.909 13.42 0.00 39.39 4.73
44 45 3.298760 CGTTCATCAAATGACAACGCATG 59.701 43.478 13.42 0.00 39.39 4.06
57 58 5.847111 ACAACGCATGTCTATAGTTAGGA 57.153 39.130 0.00 0.00 37.96 2.94
58 59 6.216801 ACAACGCATGTCTATAGTTAGGAA 57.783 37.500 0.00 0.00 37.96 3.36
59 60 6.636705 ACAACGCATGTCTATAGTTAGGAAA 58.363 36.000 0.00 0.00 37.96 3.13
60 61 6.534079 ACAACGCATGTCTATAGTTAGGAAAC 59.466 38.462 0.00 0.00 37.96 2.78
61 62 6.216801 ACGCATGTCTATAGTTAGGAAACA 57.783 37.500 0.00 0.00 38.12 2.83
62 63 6.817184 ACGCATGTCTATAGTTAGGAAACAT 58.183 36.000 0.00 0.00 38.12 2.71
63 64 7.948357 ACGCATGTCTATAGTTAGGAAACATA 58.052 34.615 0.00 0.00 38.12 2.29
64 65 8.418662 ACGCATGTCTATAGTTAGGAAACATAA 58.581 33.333 0.00 0.00 38.12 1.90
65 66 9.424319 CGCATGTCTATAGTTAGGAAACATAAT 57.576 33.333 0.00 0.00 38.12 1.28
88 89 7.938563 ATCATCTTTGATTAACGAGCTAGTC 57.061 36.000 0.00 0.00 39.64 2.59
89 90 6.863275 TCATCTTTGATTAACGAGCTAGTCA 58.137 36.000 0.00 0.00 0.00 3.41
90 91 7.320399 TCATCTTTGATTAACGAGCTAGTCAA 58.680 34.615 0.00 0.00 0.00 3.18
91 92 7.489435 TCATCTTTGATTAACGAGCTAGTCAAG 59.511 37.037 0.00 0.00 31.56 3.02
92 93 6.688578 TCTTTGATTAACGAGCTAGTCAAGT 58.311 36.000 0.00 0.00 31.56 3.16
93 94 7.823665 TCTTTGATTAACGAGCTAGTCAAGTA 58.176 34.615 0.00 0.00 31.56 2.24
94 95 7.968956 TCTTTGATTAACGAGCTAGTCAAGTAG 59.031 37.037 0.00 0.00 31.56 2.57
95 96 6.997239 TGATTAACGAGCTAGTCAAGTAGA 57.003 37.500 0.00 0.00 0.00 2.59
96 97 7.017498 TGATTAACGAGCTAGTCAAGTAGAG 57.983 40.000 0.00 0.00 0.00 2.43
97 98 5.814764 TTAACGAGCTAGTCAAGTAGAGG 57.185 43.478 0.00 0.00 0.00 3.69
98 99 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
99 100 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
100 101 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
101 102 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
102 103 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
103 104 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
104 105 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
105 106 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
106 107 5.182380 GCTAGTCAAGTAGAGGCATACTAGG 59.818 48.000 0.00 0.67 36.85 3.02
107 108 4.475345 AGTCAAGTAGAGGCATACTAGGG 58.525 47.826 3.23 0.00 34.90 3.53
108 109 4.168283 AGTCAAGTAGAGGCATACTAGGGA 59.832 45.833 3.23 0.66 34.90 4.20
109 110 4.278919 GTCAAGTAGAGGCATACTAGGGAC 59.721 50.000 3.23 7.70 34.90 4.46
110 111 4.079385 TCAAGTAGAGGCATACTAGGGACA 60.079 45.833 3.23 0.00 34.90 4.02
111 112 3.834938 AGTAGAGGCATACTAGGGACAC 58.165 50.000 0.00 0.00 34.21 3.67
112 113 3.464080 AGTAGAGGCATACTAGGGACACT 59.536 47.826 0.00 0.00 34.21 3.55
113 114 4.664064 AGTAGAGGCATACTAGGGACACTA 59.336 45.833 0.00 0.00 34.21 2.74
114 115 4.750833 AGAGGCATACTAGGGACACTAT 57.249 45.455 0.00 0.00 0.00 2.12
115 116 4.411927 AGAGGCATACTAGGGACACTATG 58.588 47.826 0.00 0.00 0.00 2.23
116 117 4.140900 AGAGGCATACTAGGGACACTATGT 60.141 45.833 0.00 0.00 0.00 2.29
117 118 5.074652 AGAGGCATACTAGGGACACTATGTA 59.925 44.000 0.00 0.00 0.00 2.29
118 119 5.905088 AGGCATACTAGGGACACTATGTAT 58.095 41.667 0.00 0.00 31.75 2.29
119 120 6.323737 AGGCATACTAGGGACACTATGTATT 58.676 40.000 0.00 0.00 30.45 1.89
120 121 6.211584 AGGCATACTAGGGACACTATGTATTG 59.788 42.308 0.00 3.71 30.45 1.90
121 122 6.014499 GGCATACTAGGGACACTATGTATTGT 60.014 42.308 0.00 0.00 30.45 2.71
122 123 7.091443 GCATACTAGGGACACTATGTATTGTC 58.909 42.308 0.00 2.85 41.28 3.18
123 124 7.039644 GCATACTAGGGACACTATGTATTGTCT 60.040 40.741 9.46 0.00 41.65 3.41
124 125 9.516546 CATACTAGGGACACTATGTATTGTCTA 57.483 37.037 9.46 0.00 41.65 2.59
126 127 8.410673 ACTAGGGACACTATGTATTGTCTATG 57.589 38.462 9.46 3.06 41.65 2.23
127 128 8.005388 ACTAGGGACACTATGTATTGTCTATGT 58.995 37.037 9.46 0.00 41.65 2.29
128 129 9.516546 CTAGGGACACTATGTATTGTCTATGTA 57.483 37.037 9.46 0.00 41.65 2.29
129 130 8.958060 AGGGACACTATGTATTGTCTATGTAT 57.042 34.615 9.46 0.00 41.65 2.29
130 131 9.381038 AGGGACACTATGTATTGTCTATGTATT 57.619 33.333 9.46 0.00 41.65 1.89
131 132 9.640963 GGGACACTATGTATTGTCTATGTATTC 57.359 37.037 9.46 0.00 41.65 1.75
139 140 9.836864 ATGTATTGTCTATGTATTCACACATGT 57.163 29.630 0.00 0.00 39.46 3.21
144 145 9.665719 TTGTCTATGTATTCACACATGTATTGT 57.334 29.630 0.00 0.00 39.46 2.71
160 161 8.784994 ACATGTATTGTGTTTTCGGTTAATACA 58.215 29.630 0.00 0.00 42.00 2.29
161 162 9.613957 CATGTATTGTGTTTTCGGTTAATACAA 57.386 29.630 10.47 0.00 41.48 2.41
167 168 9.666626 TTGTGTTTTCGGTTAATACAATTGTAG 57.333 29.630 22.03 8.83 33.52 2.74
168 169 7.804129 TGTGTTTTCGGTTAATACAATTGTAGC 59.196 33.333 22.03 10.70 31.91 3.58
169 170 7.804129 GTGTTTTCGGTTAATACAATTGTAGCA 59.196 33.333 22.03 10.48 31.91 3.49
170 171 8.516234 TGTTTTCGGTTAATACAATTGTAGCAT 58.484 29.630 22.03 13.61 33.52 3.79
171 172 8.794406 GTTTTCGGTTAATACAATTGTAGCATG 58.206 33.333 22.03 10.59 33.52 4.06
172 173 7.851387 TTCGGTTAATACAATTGTAGCATGA 57.149 32.000 22.03 12.42 33.52 3.07
173 174 7.851387 TCGGTTAATACAATTGTAGCATGAA 57.149 32.000 22.03 5.15 33.52 2.57
174 175 8.445275 TCGGTTAATACAATTGTAGCATGAAT 57.555 30.769 22.03 3.39 33.52 2.57
175 176 9.549078 TCGGTTAATACAATTGTAGCATGAATA 57.451 29.630 22.03 0.00 33.52 1.75
247 248 4.982241 CCTCTAAGGCATATTTCCTCCA 57.018 45.455 0.00 0.00 32.45 3.86
248 249 4.904241 CCTCTAAGGCATATTTCCTCCAG 58.096 47.826 0.00 0.00 32.45 3.86
249 250 4.263243 CCTCTAAGGCATATTTCCTCCAGG 60.263 50.000 0.00 0.00 32.45 4.45
250 251 3.652869 TCTAAGGCATATTTCCTCCAGGG 59.347 47.826 0.00 0.00 35.41 4.45
251 252 0.480252 AGGCATATTTCCTCCAGGGC 59.520 55.000 0.00 0.00 35.41 5.19
252 253 0.540597 GGCATATTTCCTCCAGGGCC 60.541 60.000 0.00 0.00 35.41 5.80
253 254 0.185901 GCATATTTCCTCCAGGGCCA 59.814 55.000 6.18 0.00 35.41 5.36
254 255 1.411501 GCATATTTCCTCCAGGGCCAA 60.412 52.381 6.18 0.00 35.41 4.52
255 256 2.310538 CATATTTCCTCCAGGGCCAAC 58.689 52.381 6.18 0.00 35.41 3.77
256 257 1.377690 TATTTCCTCCAGGGCCAACA 58.622 50.000 6.18 0.00 35.41 3.33
257 258 0.712380 ATTTCCTCCAGGGCCAACAT 59.288 50.000 6.18 0.00 35.41 2.71
258 259 0.486879 TTTCCTCCAGGGCCAACATT 59.513 50.000 6.18 0.00 35.41 2.71
259 260 0.486879 TTCCTCCAGGGCCAACATTT 59.513 50.000 6.18 0.00 35.41 2.32
260 261 1.377690 TCCTCCAGGGCCAACATTTA 58.622 50.000 6.18 0.00 35.41 1.40
261 262 1.713647 TCCTCCAGGGCCAACATTTAA 59.286 47.619 6.18 0.00 35.41 1.52
262 263 2.102578 CCTCCAGGGCCAACATTTAAG 58.897 52.381 6.18 0.00 0.00 1.85
263 264 2.102578 CTCCAGGGCCAACATTTAAGG 58.897 52.381 6.18 0.00 0.00 2.69
264 265 1.713647 TCCAGGGCCAACATTTAAGGA 59.286 47.619 6.18 0.00 0.00 3.36
265 266 2.102578 CCAGGGCCAACATTTAAGGAG 58.897 52.381 6.18 0.00 0.00 3.69
266 267 2.557452 CCAGGGCCAACATTTAAGGAGT 60.557 50.000 6.18 0.00 0.00 3.85
267 268 2.493278 CAGGGCCAACATTTAAGGAGTG 59.507 50.000 6.18 0.00 0.00 3.51
268 269 1.824852 GGGCCAACATTTAAGGAGTGG 59.175 52.381 4.39 1.11 0.00 4.00
269 270 1.824852 GGCCAACATTTAAGGAGTGGG 59.175 52.381 0.00 0.00 0.00 4.61
270 271 1.204704 GCCAACATTTAAGGAGTGGGC 59.795 52.381 6.65 6.65 44.43 5.36
271 272 2.524306 CCAACATTTAAGGAGTGGGCA 58.476 47.619 0.00 0.00 0.00 5.36
272 273 2.493278 CCAACATTTAAGGAGTGGGCAG 59.507 50.000 0.00 0.00 0.00 4.85
273 274 3.420893 CAACATTTAAGGAGTGGGCAGA 58.579 45.455 0.00 0.00 0.00 4.26
274 275 3.073274 ACATTTAAGGAGTGGGCAGAC 57.927 47.619 0.00 0.00 0.00 3.51
275 276 2.009774 CATTTAAGGAGTGGGCAGACG 58.990 52.381 0.00 0.00 0.00 4.18
276 277 1.053424 TTTAAGGAGTGGGCAGACGT 58.947 50.000 0.00 0.00 0.00 4.34
277 278 1.053424 TTAAGGAGTGGGCAGACGTT 58.947 50.000 0.00 0.00 0.00 3.99
278 279 0.320374 TAAGGAGTGGGCAGACGTTG 59.680 55.000 0.00 0.00 0.00 4.10
279 280 1.696097 AAGGAGTGGGCAGACGTTGT 61.696 55.000 0.00 0.00 0.00 3.32
280 281 1.668151 GGAGTGGGCAGACGTTGTC 60.668 63.158 0.00 0.00 0.00 3.18
297 298 2.884894 GTCCGTGGACATAACTAGGG 57.115 55.000 14.10 0.00 44.02 3.53
298 299 2.105766 GTCCGTGGACATAACTAGGGT 58.894 52.381 14.10 0.00 44.02 4.34
299 300 3.290710 GTCCGTGGACATAACTAGGGTA 58.709 50.000 14.10 0.00 44.02 3.69
300 301 3.317430 GTCCGTGGACATAACTAGGGTAG 59.683 52.174 14.10 0.00 44.02 3.18
301 302 3.202818 TCCGTGGACATAACTAGGGTAGA 59.797 47.826 0.00 0.00 0.00 2.59
302 303 4.141088 TCCGTGGACATAACTAGGGTAGAT 60.141 45.833 0.00 0.00 0.00 1.98
303 304 4.587684 CCGTGGACATAACTAGGGTAGATT 59.412 45.833 0.00 0.00 0.00 2.40
361 363 5.821995 CCAGACATTTTGGATTTTGGTTTGT 59.178 36.000 0.00 0.00 37.96 2.83
362 364 6.318396 CCAGACATTTTGGATTTTGGTTTGTT 59.682 34.615 0.00 0.00 37.96 2.83
363 365 7.408910 CAGACATTTTGGATTTTGGTTTGTTC 58.591 34.615 0.00 0.00 0.00 3.18
374 376 7.598869 GGATTTTGGTTTGTTCTTAGATTGGAC 59.401 37.037 0.00 0.00 0.00 4.02
375 377 7.411486 TTTTGGTTTGTTCTTAGATTGGACA 57.589 32.000 0.00 0.00 0.00 4.02
377 379 5.935945 TGGTTTGTTCTTAGATTGGACAGA 58.064 37.500 0.00 0.00 0.00 3.41
379 381 6.655003 TGGTTTGTTCTTAGATTGGACAGATC 59.345 38.462 0.00 0.00 0.00 2.75
381 383 8.041323 GGTTTGTTCTTAGATTGGACAGATCTA 58.959 37.037 0.00 0.00 35.56 1.98
391 393 3.017442 TGGACAGATCTAGAGACAACCG 58.983 50.000 0.00 0.00 0.00 4.44
395 397 4.527944 ACAGATCTAGAGACAACCGATCA 58.472 43.478 0.00 0.00 34.43 2.92
403 405 4.499183 AGAGACAACCGATCAGTGAAATC 58.501 43.478 0.00 0.00 0.00 2.17
416 418 2.362169 TGAAATCATCACGAGTCGCA 57.638 45.000 13.59 0.00 31.50 5.10
432 434 1.102154 CGCAAAACCTGGCCATATGA 58.898 50.000 5.51 0.00 0.00 2.15
434 436 1.410153 GCAAAACCTGGCCATATGAGG 59.590 52.381 5.51 6.07 0.00 3.86
441 443 3.826221 GCCATATGAGGCGTGCAA 58.174 55.556 3.65 0.00 46.12 4.08
477 479 3.119193 CATGGAATTTCGGCCCGG 58.881 61.111 1.90 0.00 0.00 5.73
478 480 1.752694 CATGGAATTTCGGCCCGGT 60.753 57.895 1.90 0.00 0.00 5.28
480 482 0.464916 ATGGAATTTCGGCCCGGTAC 60.465 55.000 1.90 0.00 0.00 3.34
497 499 4.039357 CGTGCCCGACTCGACACT 62.039 66.667 17.21 0.00 37.45 3.55
499 501 2.596338 TGCCCGACTCGACACTCA 60.596 61.111 0.00 0.00 0.00 3.41
507 509 4.091509 CCCGACTCGACACTCAATTAAAAG 59.908 45.833 0.00 0.00 0.00 2.27
511 513 5.374071 ACTCGACACTCAATTAAAAGGGTT 58.626 37.500 0.00 0.00 0.00 4.11
514 516 4.517453 CGACACTCAATTAAAAGGGTTGGA 59.483 41.667 0.00 0.00 28.26 3.53
516 518 4.587262 ACACTCAATTAAAAGGGTTGGACC 59.413 41.667 0.00 0.00 37.60 4.46
517 519 4.586841 CACTCAATTAAAAGGGTTGGACCA 59.413 41.667 0.00 0.00 41.02 4.02
518 520 4.832823 ACTCAATTAAAAGGGTTGGACCAG 59.167 41.667 0.00 0.00 41.02 4.00
524 526 1.774217 AGGGTTGGACCAGCCTTCA 60.774 57.895 24.92 0.00 42.30 3.02
528 530 3.551496 TTGGACCAGCCTTCAGCCG 62.551 63.158 0.00 0.00 45.47 5.52
534 536 4.269523 AGCCTTCAGCCGCCACAA 62.270 61.111 0.00 0.00 45.47 3.33
535 537 3.294493 GCCTTCAGCCGCCACAAA 61.294 61.111 0.00 0.00 34.35 2.83
536 538 2.855514 GCCTTCAGCCGCCACAAAA 61.856 57.895 0.00 0.00 34.35 2.44
537 539 1.007387 CCTTCAGCCGCCACAAAAC 60.007 57.895 0.00 0.00 0.00 2.43
538 540 1.732917 CTTCAGCCGCCACAAAACA 59.267 52.632 0.00 0.00 0.00 2.83
539 541 0.102120 CTTCAGCCGCCACAAAACAA 59.898 50.000 0.00 0.00 0.00 2.83
540 542 0.102120 TTCAGCCGCCACAAAACAAG 59.898 50.000 0.00 0.00 0.00 3.16
541 543 0.749818 TCAGCCGCCACAAAACAAGA 60.750 50.000 0.00 0.00 0.00 3.02
542 544 0.594796 CAGCCGCCACAAAACAAGAC 60.595 55.000 0.00 0.00 0.00 3.01
544 546 1.008995 CCGCCACAAAACAAGACCG 60.009 57.895 0.00 0.00 0.00 4.79
545 547 1.440938 CCGCCACAAAACAAGACCGA 61.441 55.000 0.00 0.00 0.00 4.69
546 548 0.591170 CGCCACAAAACAAGACCGAT 59.409 50.000 0.00 0.00 0.00 4.18
547 549 1.399727 CGCCACAAAACAAGACCGATC 60.400 52.381 0.00 0.00 0.00 3.69
553 557 3.895041 ACAAAACAAGACCGATCCCAAAT 59.105 39.130 0.00 0.00 0.00 2.32
554 558 4.022329 ACAAAACAAGACCGATCCCAAATC 60.022 41.667 0.00 0.00 0.00 2.17
561 565 1.533711 CGATCCCAAATCCAGGCCT 59.466 57.895 0.00 0.00 0.00 5.19
581 585 2.130821 TAAGGCCGGGCATGACACAA 62.131 55.000 31.59 0.00 0.00 3.33
583 587 2.569354 GGCCGGGCATGACACAAAA 61.569 57.895 25.33 0.00 0.00 2.44
589 593 4.310769 CCGGGCATGACACAAAATTTTTA 58.689 39.130 0.00 0.00 0.00 1.52
591 595 5.333721 CCGGGCATGACACAAAATTTTTAAC 60.334 40.000 0.00 0.00 0.00 2.01
594 598 6.259829 GGGCATGACACAAAATTTTTAACTGT 59.740 34.615 0.00 0.78 0.00 3.55
595 599 7.125113 GGCATGACACAAAATTTTTAACTGTG 58.875 34.615 15.22 15.22 42.43 3.66
596 600 7.125113 GCATGACACAAAATTTTTAACTGTGG 58.875 34.615 19.10 7.04 41.32 4.17
600 604 4.025313 CACAAAATTTTTAACTGTGGGCCG 60.025 41.667 10.73 0.00 34.97 6.13
604 608 2.054232 TTTTAACTGTGGGCCGACAA 57.946 45.000 21.78 4.22 0.00 3.18
628 632 0.896923 TGGCCCGACGTGTAACTATT 59.103 50.000 0.00 0.00 31.75 1.73
629 633 1.275856 TGGCCCGACGTGTAACTATTT 59.724 47.619 0.00 0.00 31.75 1.40
736 776 9.949174 AAATTTTTGGAATTTTCTGAATTTCCG 57.051 25.926 19.43 0.00 43.44 4.30
751 791 1.104630 TTCCGAAAAACAAACGGCCT 58.895 45.000 0.00 0.00 45.25 5.19
758 798 4.083484 CGAAAAACAAACGGCCTAGAAGAT 60.083 41.667 0.00 0.00 0.00 2.40
762 802 2.232941 ACAAACGGCCTAGAAGATCGAA 59.767 45.455 0.00 0.00 0.00 3.71
769 809 4.435651 CGGCCTAGAAGATCGAAAAACAAC 60.436 45.833 0.00 0.00 0.00 3.32
770 810 4.435651 GGCCTAGAAGATCGAAAAACAACG 60.436 45.833 0.00 0.00 0.00 4.10
771 811 4.638963 CCTAGAAGATCGAAAAACAACGC 58.361 43.478 0.00 0.00 0.00 4.84
772 812 3.169207 AGAAGATCGAAAAACAACGCG 57.831 42.857 3.53 3.53 0.00 6.01
851 910 3.446570 GCCATGCTGTGCCAGACC 61.447 66.667 6.40 0.00 32.44 3.85
853 912 1.603842 CCATGCTGTGCCAGACCTA 59.396 57.895 6.40 0.00 32.44 3.08
861 920 2.169352 CTGTGCCAGACCTATTACAGCT 59.831 50.000 0.00 0.00 32.44 4.24
867 926 0.249911 GACCTATTACAGCTGGGCCG 60.250 60.000 19.93 2.47 0.00 6.13
868 927 0.689745 ACCTATTACAGCTGGGCCGA 60.690 55.000 19.93 0.00 0.00 5.54
869 928 0.034059 CCTATTACAGCTGGGCCGAG 59.966 60.000 19.93 10.99 0.00 4.63
870 929 0.601311 CTATTACAGCTGGGCCGAGC 60.601 60.000 30.60 30.60 39.46 5.03
917 976 1.600076 CGACGCCTAGCCTAGCCTA 60.600 63.158 0.00 0.00 0.00 3.93
918 977 1.579084 CGACGCCTAGCCTAGCCTAG 61.579 65.000 0.59 0.59 35.62 3.02
919 978 1.868987 GACGCCTAGCCTAGCCTAGC 61.869 65.000 2.10 0.00 34.74 3.42
920 979 2.641277 CGCCTAGCCTAGCCTAGCC 61.641 68.421 2.10 0.00 34.74 3.93
921 980 1.229051 GCCTAGCCTAGCCTAGCCT 60.229 63.158 2.10 0.00 34.74 4.58
922 981 1.254975 GCCTAGCCTAGCCTAGCCTC 61.255 65.000 2.10 0.00 34.74 4.70
923 982 0.407918 CCTAGCCTAGCCTAGCCTCT 59.592 60.000 2.10 0.00 34.74 3.69
924 983 1.615919 CCTAGCCTAGCCTAGCCTCTC 60.616 61.905 2.10 0.00 34.74 3.20
954 1013 1.374252 CCACCCGAGTGTGTGTAGC 60.374 63.158 0.00 0.00 42.88 3.58
1672 2037 4.457496 CACACCGCCATCCGCTCT 62.457 66.667 0.00 0.00 35.03 4.09
1687 2052 1.807573 CTCTGTTCGCTCCGGCTTC 60.808 63.158 0.00 0.00 36.09 3.86
1878 2243 5.116069 GAGAAGGATCTCGATGGACTAAC 57.884 47.826 0.00 0.00 42.54 2.34
2009 2374 1.227527 CCAGAACAGGCGTGTCACA 60.228 57.895 13.21 0.00 35.08 3.58
2011 2376 1.229428 CAGAACAGGCGTGTCACATT 58.771 50.000 13.21 0.00 35.08 2.71
2116 2481 1.255882 TTAACGAGTACTTCCGCCCA 58.744 50.000 0.00 0.00 0.00 5.36
2155 2520 3.385749 GAAGGAGGCGGGCGATGAA 62.386 63.158 0.00 0.00 0.00 2.57
2161 2526 3.654020 GCGGGCGATGAAGGATGC 61.654 66.667 0.00 0.00 0.00 3.91
2218 2583 1.657804 GGAGGGAGAAGACCAGGAAA 58.342 55.000 0.00 0.00 0.00 3.13
2257 2622 2.573009 TGGCTCTCATGTCTTGATTGGA 59.427 45.455 0.00 0.00 32.72 3.53
2350 2715 1.561643 TGAGGCCAGAGAATTCGTCT 58.438 50.000 5.01 0.96 40.25 4.18
2404 2769 5.655090 TGAATTCTTGGATCATGTCATTGCT 59.345 36.000 7.05 0.00 0.00 3.91
2437 3694 0.690762 ACCCAACCTTGCGATACACT 59.309 50.000 0.00 0.00 0.00 3.55
2569 3826 4.063335 AGGGATCCTGAGCCACTG 57.937 61.111 12.58 0.00 38.99 3.66
2572 3829 2.673200 GGATCCTGAGCCACTGCCA 61.673 63.158 3.84 0.00 36.74 4.92
2602 3859 2.185350 CTGTACTCTGGGCAGGCG 59.815 66.667 0.00 0.00 0.00 5.52
2694 3951 2.093447 AGAAGATTGTAGGGTTCTGCGG 60.093 50.000 0.00 0.00 0.00 5.69
2792 4049 1.591059 GCATCGCGTGATCTCAGCT 60.591 57.895 8.88 0.00 30.49 4.24
2854 4111 2.633967 CTCTGATCTCTTGAGGATGGGG 59.366 54.545 0.00 0.00 0.00 4.96
2932 4189 8.210946 TCATGTGATTATACAACTTTCCCTAGG 58.789 37.037 0.06 0.06 33.69 3.02
3052 4309 5.163258 GGAGATAAGTTCACCACAGGATGAT 60.163 44.000 0.00 0.00 41.26 2.45
3141 4398 9.971922 GAAATTAAATGAATGGAGGAGTAATGG 57.028 33.333 0.00 0.00 0.00 3.16
3314 4572 5.895636 TGTGTTTGCAGAATACTAATGGG 57.104 39.130 8.90 0.00 0.00 4.00
3346 4604 1.202268 CGACCTACCAGCTAAAGACCG 60.202 57.143 0.00 0.00 0.00 4.79
3386 4644 5.521372 GGCAAATATTTGGATGTTCAAGAGC 59.479 40.000 25.61 9.40 38.57 4.09
3475 4733 6.163476 TGTGTACTTGTCCTGACATCATTAC 58.837 40.000 0.03 2.07 41.52 1.89
3516 4775 5.273170 TCTTTTTCTGTTTGATGTCTTGCG 58.727 37.500 0.00 0.00 0.00 4.85
3532 4791 5.986741 TGTCTTGCGAACTTATGTTTCTACA 59.013 36.000 0.00 0.00 36.39 2.74
3571 4830 9.332502 TGTTGTTTGTAGTTATTGTGACACTAT 57.667 29.630 7.20 7.45 0.00 2.12
3572 4831 9.594038 GTTGTTTGTAGTTATTGTGACACTATG 57.406 33.333 12.08 0.00 0.00 2.23
3713 4978 7.373617 TGTTAATGATATAAGAGCACCTCCA 57.626 36.000 0.00 0.00 0.00 3.86
3714 4979 7.217200 TGTTAATGATATAAGAGCACCTCCAC 58.783 38.462 0.00 0.00 0.00 4.02
3715 4980 7.071196 TGTTAATGATATAAGAGCACCTCCACT 59.929 37.037 0.00 0.00 0.00 4.00
3716 4981 5.736951 ATGATATAAGAGCACCTCCACTC 57.263 43.478 0.00 0.00 0.00 3.51
3717 4982 3.570125 TGATATAAGAGCACCTCCACTCG 59.430 47.826 0.00 0.00 37.99 4.18
3718 4983 0.461961 ATAAGAGCACCTCCACTCGC 59.538 55.000 0.00 0.00 37.99 5.03
3719 4984 1.605058 TAAGAGCACCTCCACTCGCC 61.605 60.000 0.00 0.00 37.99 5.54
3720 4985 4.459089 GAGCACCTCCACTCGCCC 62.459 72.222 0.00 0.00 0.00 6.13
3741 5006 4.382541 CCCCCTCCAACAAGGCCC 62.383 72.222 0.00 0.00 37.29 5.80
3742 5007 4.382541 CCCCTCCAACAAGGCCCC 62.383 72.222 0.00 0.00 37.29 5.80
3743 5008 4.382541 CCCTCCAACAAGGCCCCC 62.383 72.222 0.00 0.00 37.29 5.40
3773 5038 3.399440 TTTTTACCTCCGGCGTCTAAA 57.601 42.857 6.01 0.00 0.00 1.85
3774 5039 3.399440 TTTTACCTCCGGCGTCTAAAA 57.601 42.857 6.01 5.32 0.00 1.52
3775 5040 3.399440 TTTACCTCCGGCGTCTAAAAA 57.601 42.857 6.01 0.00 0.00 1.94
3789 5054 3.656045 AAAAACGGCCCAGTCGCG 61.656 61.111 0.00 0.00 32.11 5.87
3806 5071 2.679996 GCCCCCGGAAGCACAAAT 60.680 61.111 0.73 0.00 0.00 2.32
3807 5072 2.282783 GCCCCCGGAAGCACAAATT 61.283 57.895 0.73 0.00 0.00 1.82
3808 5073 1.826340 GCCCCCGGAAGCACAAATTT 61.826 55.000 0.73 0.00 0.00 1.82
3809 5074 0.246360 CCCCCGGAAGCACAAATTTC 59.754 55.000 0.73 0.00 0.00 2.17
3810 5075 0.109319 CCCCGGAAGCACAAATTTCG 60.109 55.000 0.73 0.00 0.00 3.46
3811 5076 0.732538 CCCGGAAGCACAAATTTCGC 60.733 55.000 0.73 1.58 0.00 4.70
3812 5077 0.240945 CCGGAAGCACAAATTTCGCT 59.759 50.000 0.00 5.91 37.68 4.93
3813 5078 1.330306 CGGAAGCACAAATTTCGCTG 58.670 50.000 11.42 0.00 35.79 5.18
3814 5079 1.701704 GGAAGCACAAATTTCGCTGG 58.298 50.000 11.42 0.00 35.79 4.85
3815 5080 1.000274 GGAAGCACAAATTTCGCTGGT 60.000 47.619 11.42 0.27 35.79 4.00
3816 5081 2.545742 GGAAGCACAAATTTCGCTGGTT 60.546 45.455 11.42 7.92 35.79 3.67
3817 5082 3.305064 GGAAGCACAAATTTCGCTGGTTA 60.305 43.478 11.42 0.00 35.79 2.85
3818 5083 3.559238 AGCACAAATTTCGCTGGTTAG 57.441 42.857 10.17 0.00 33.91 2.34
3819 5084 2.228822 AGCACAAATTTCGCTGGTTAGG 59.771 45.455 10.17 0.00 33.91 2.69
3820 5085 2.671070 GCACAAATTTCGCTGGTTAGGG 60.671 50.000 2.50 0.00 38.16 3.53
3821 5086 1.544246 ACAAATTTCGCTGGTTAGGGC 59.456 47.619 0.00 0.00 36.84 5.19
3822 5087 1.135112 CAAATTTCGCTGGTTAGGGCC 60.135 52.381 0.00 0.00 36.84 5.80
3823 5088 1.029947 AATTTCGCTGGTTAGGGCCG 61.030 55.000 0.00 0.00 36.84 6.13
3824 5089 1.906105 ATTTCGCTGGTTAGGGCCGA 61.906 55.000 0.00 0.00 36.84 5.54
3825 5090 2.114488 TTTCGCTGGTTAGGGCCGAA 62.114 55.000 0.00 0.00 36.84 4.30
3826 5091 2.046700 CGCTGGTTAGGGCCGAAA 60.047 61.111 0.00 0.00 0.00 3.46
3827 5092 1.451387 CGCTGGTTAGGGCCGAAAT 60.451 57.895 0.00 0.00 0.00 2.17
3828 5093 1.029947 CGCTGGTTAGGGCCGAAATT 61.030 55.000 0.00 0.00 0.00 1.82
3829 5094 0.455815 GCTGGTTAGGGCCGAAATTG 59.544 55.000 0.00 0.00 0.00 2.32
3830 5095 1.102978 CTGGTTAGGGCCGAAATTGG 58.897 55.000 0.00 0.00 0.00 3.16
3897 5162 3.455152 GCTGGGGGAAGCGTTTTT 58.545 55.556 0.00 0.00 32.56 1.94
3898 5163 1.006220 GCTGGGGGAAGCGTTTTTG 60.006 57.895 0.00 0.00 32.56 2.44
3899 5164 1.665442 CTGGGGGAAGCGTTTTTGG 59.335 57.895 0.00 0.00 0.00 3.28
3900 5165 1.075896 TGGGGGAAGCGTTTTTGGT 60.076 52.632 0.00 0.00 0.00 3.67
3901 5166 1.365999 GGGGGAAGCGTTTTTGGTG 59.634 57.895 0.00 0.00 0.00 4.17
3902 5167 1.300620 GGGGAAGCGTTTTTGGTGC 60.301 57.895 0.00 0.00 0.00 5.01
3903 5168 1.660264 GGGAAGCGTTTTTGGTGCG 60.660 57.895 0.00 0.00 0.00 5.34
3904 5169 1.357334 GGAAGCGTTTTTGGTGCGA 59.643 52.632 0.00 0.00 0.00 5.10
3905 5170 0.248702 GGAAGCGTTTTTGGTGCGAA 60.249 50.000 0.00 0.00 0.00 4.70
3906 5171 1.551145 GAAGCGTTTTTGGTGCGAAA 58.449 45.000 0.00 0.00 0.00 3.46
3907 5172 1.516864 GAAGCGTTTTTGGTGCGAAAG 59.483 47.619 0.00 0.00 0.00 2.62
3908 5173 0.454196 AGCGTTTTTGGTGCGAAAGT 59.546 45.000 0.00 0.00 0.00 2.66
3909 5174 0.843872 GCGTTTTTGGTGCGAAAGTC 59.156 50.000 0.00 0.00 0.00 3.01
3910 5175 1.472990 CGTTTTTGGTGCGAAAGTCC 58.527 50.000 0.00 0.00 0.00 3.85
3911 5176 1.847818 GTTTTTGGTGCGAAAGTCCC 58.152 50.000 0.00 0.00 0.00 4.46
3912 5177 1.135333 GTTTTTGGTGCGAAAGTCCCA 59.865 47.619 0.00 0.00 0.00 4.37
3913 5178 0.741915 TTTTGGTGCGAAAGTCCCAC 59.258 50.000 0.00 0.00 0.00 4.61
3914 5179 1.440938 TTTGGTGCGAAAGTCCCACG 61.441 55.000 0.00 0.00 0.00 4.94
3915 5180 3.047877 GGTGCGAAAGTCCCACGG 61.048 66.667 0.00 0.00 0.00 4.94
3916 5181 3.047877 GTGCGAAAGTCCCACGGG 61.048 66.667 0.00 0.00 0.00 5.28
3950 5215 4.421479 CCAGCCGCGTCTCGTCTT 62.421 66.667 4.92 0.00 36.19 3.01
3951 5216 2.876645 CAGCCGCGTCTCGTCTTC 60.877 66.667 4.92 0.00 36.19 2.87
3952 5217 4.117661 AGCCGCGTCTCGTCTTCC 62.118 66.667 4.92 0.00 36.19 3.46
3953 5218 4.117661 GCCGCGTCTCGTCTTCCT 62.118 66.667 4.92 0.00 36.19 3.36
3954 5219 2.100603 CCGCGTCTCGTCTTCCTC 59.899 66.667 4.92 0.00 36.19 3.71
3955 5220 2.687805 CCGCGTCTCGTCTTCCTCA 61.688 63.158 4.92 0.00 36.19 3.86
3956 5221 1.429825 CGCGTCTCGTCTTCCTCAT 59.570 57.895 0.00 0.00 0.00 2.90
3957 5222 0.590230 CGCGTCTCGTCTTCCTCATC 60.590 60.000 0.00 0.00 0.00 2.92
3958 5223 0.590230 GCGTCTCGTCTTCCTCATCG 60.590 60.000 0.00 0.00 0.00 3.84
3959 5224 0.590230 CGTCTCGTCTTCCTCATCGC 60.590 60.000 0.00 0.00 0.00 4.58
3960 5225 0.248702 GTCTCGTCTTCCTCATCGCC 60.249 60.000 0.00 0.00 0.00 5.54
3961 5226 0.394488 TCTCGTCTTCCTCATCGCCT 60.394 55.000 0.00 0.00 0.00 5.52
3962 5227 0.030101 CTCGTCTTCCTCATCGCCTC 59.970 60.000 0.00 0.00 0.00 4.70
3963 5228 1.298713 CGTCTTCCTCATCGCCTCG 60.299 63.158 0.00 0.00 0.00 4.63
3964 5229 1.810532 GTCTTCCTCATCGCCTCGT 59.189 57.895 0.00 0.00 0.00 4.18
3965 5230 0.173708 GTCTTCCTCATCGCCTCGTT 59.826 55.000 0.00 0.00 0.00 3.85
3966 5231 0.895530 TCTTCCTCATCGCCTCGTTT 59.104 50.000 0.00 0.00 0.00 3.60
3967 5232 1.135083 TCTTCCTCATCGCCTCGTTTC 60.135 52.381 0.00 0.00 0.00 2.78
3968 5233 0.108329 TTCCTCATCGCCTCGTTTCC 60.108 55.000 0.00 0.00 0.00 3.13
3969 5234 1.521681 CCTCATCGCCTCGTTTCCC 60.522 63.158 0.00 0.00 0.00 3.97
3970 5235 1.878522 CTCATCGCCTCGTTTCCCG 60.879 63.158 0.00 0.00 38.13 5.14
3971 5236 3.564027 CATCGCCTCGTTTCCCGC 61.564 66.667 0.00 0.00 36.19 6.13
3985 5250 3.595758 CCGCGGGGAATCAATGCC 61.596 66.667 20.10 0.00 39.22 4.40
3986 5251 2.828095 CGCGGGGAATCAATGCCA 60.828 61.111 0.00 0.00 42.44 4.92
3987 5252 2.413963 CGCGGGGAATCAATGCCAA 61.414 57.895 0.00 0.00 42.44 4.52
3988 5253 1.438814 GCGGGGAATCAATGCCAAG 59.561 57.895 0.00 0.00 42.44 3.61
3989 5254 2.019897 GCGGGGAATCAATGCCAAGG 62.020 60.000 0.00 0.00 42.44 3.61
3990 5255 1.825341 GGGGAATCAATGCCAAGGC 59.175 57.895 3.61 3.61 42.44 4.35
3991 5256 0.688749 GGGGAATCAATGCCAAGGCT 60.689 55.000 12.96 0.00 42.44 4.58
3992 5257 0.462789 GGGAATCAATGCCAAGGCTG 59.537 55.000 12.96 3.28 39.85 4.85
3993 5258 0.179092 GGAATCAATGCCAAGGCTGC 60.179 55.000 12.96 0.00 42.51 5.25
3994 5259 0.179092 GAATCAATGCCAAGGCTGCC 60.179 55.000 11.65 11.65 42.51 4.85
3995 5260 1.952102 AATCAATGCCAAGGCTGCCG 61.952 55.000 13.96 0.00 42.51 5.69
3996 5261 4.807039 CAATGCCAAGGCTGCCGC 62.807 66.667 13.96 11.58 42.51 6.53
4011 5276 4.473520 CGCCGGTCAGCCTTCCAT 62.474 66.667 1.90 0.00 0.00 3.41
4012 5277 2.044946 GCCGGTCAGCCTTCCATT 60.045 61.111 1.90 0.00 0.00 3.16
4013 5278 2.409870 GCCGGTCAGCCTTCCATTG 61.410 63.158 1.90 0.00 0.00 2.82
4014 5279 1.299648 CCGGTCAGCCTTCCATTGA 59.700 57.895 0.00 0.00 0.00 2.57
4015 5280 0.107017 CCGGTCAGCCTTCCATTGAT 60.107 55.000 0.00 0.00 0.00 2.57
4016 5281 1.683011 CCGGTCAGCCTTCCATTGATT 60.683 52.381 0.00 0.00 0.00 2.57
4017 5282 1.672881 CGGTCAGCCTTCCATTGATTC 59.327 52.381 0.00 0.00 0.00 2.52
4018 5283 2.027385 GGTCAGCCTTCCATTGATTCC 58.973 52.381 0.00 0.00 0.00 3.01
4019 5284 2.027385 GTCAGCCTTCCATTGATTCCC 58.973 52.381 0.00 0.00 0.00 3.97
4020 5285 1.063717 TCAGCCTTCCATTGATTCCCC 60.064 52.381 0.00 0.00 0.00 4.81
4021 5286 1.009997 AGCCTTCCATTGATTCCCCA 58.990 50.000 0.00 0.00 0.00 4.96
4022 5287 1.114627 GCCTTCCATTGATTCCCCAC 58.885 55.000 0.00 0.00 0.00 4.61
4023 5288 1.392589 CCTTCCATTGATTCCCCACG 58.607 55.000 0.00 0.00 0.00 4.94
4024 5289 1.392589 CTTCCATTGATTCCCCACGG 58.607 55.000 0.00 0.00 0.00 4.94
4025 5290 0.033601 TTCCATTGATTCCCCACGGG 60.034 55.000 0.00 0.00 46.11 5.28
4026 5291 2.127232 CCATTGATTCCCCACGGGC 61.127 63.158 0.00 0.00 43.94 6.13
4027 5292 2.124320 ATTGATTCCCCACGGGCG 60.124 61.111 0.00 0.00 43.94 6.13
4028 5293 3.714487 ATTGATTCCCCACGGGCGG 62.714 63.158 0.00 0.00 43.94 6.13
4037 5302 4.508128 CACGGGCGGCGTAGTGAT 62.508 66.667 20.48 0.00 36.79 3.06
4038 5303 4.508128 ACGGGCGGCGTAGTGATG 62.508 66.667 9.37 0.00 0.00 3.07
4042 5307 4.530857 GCGGCGTAGTGATGGCCT 62.531 66.667 9.37 0.00 44.68 5.19
4043 5308 2.586079 CGGCGTAGTGATGGCCTG 60.586 66.667 3.32 0.00 44.68 4.85
4044 5309 2.203070 GGCGTAGTGATGGCCTGG 60.203 66.667 3.32 0.00 43.52 4.45
4045 5310 2.897350 GCGTAGTGATGGCCTGGC 60.897 66.667 11.05 11.05 0.00 4.85
4046 5311 2.586079 CGTAGTGATGGCCTGGCG 60.586 66.667 13.40 0.00 0.00 5.69
4047 5312 2.900273 GTAGTGATGGCCTGGCGA 59.100 61.111 13.40 9.69 0.00 5.54
4048 5313 1.521681 GTAGTGATGGCCTGGCGAC 60.522 63.158 13.40 6.63 0.00 5.19
4049 5314 3.076258 TAGTGATGGCCTGGCGACG 62.076 63.158 13.40 0.00 0.00 5.12
4070 5335 4.181010 CGTCCCCCTCCAGCCATG 62.181 72.222 0.00 0.00 0.00 3.66
4071 5336 4.512914 GTCCCCCTCCAGCCATGC 62.513 72.222 0.00 0.00 0.00 4.06
4074 5339 3.479203 CCCCTCCAGCCATGCGTA 61.479 66.667 0.00 0.00 0.00 4.42
4075 5340 2.203070 CCCTCCAGCCATGCGTAC 60.203 66.667 0.00 0.00 0.00 3.67
4076 5341 2.584064 CCTCCAGCCATGCGTACA 59.416 61.111 0.00 0.00 0.00 2.90
4077 5342 1.815421 CCTCCAGCCATGCGTACAC 60.815 63.158 0.00 0.00 0.00 2.90
4078 5343 1.079197 CTCCAGCCATGCGTACACA 60.079 57.895 0.00 0.00 0.00 3.72
4079 5344 1.361668 CTCCAGCCATGCGTACACAC 61.362 60.000 0.00 0.00 0.00 3.82
4080 5345 1.670730 CCAGCCATGCGTACACACA 60.671 57.895 0.00 0.00 0.00 3.72
4081 5346 1.497278 CAGCCATGCGTACACACAC 59.503 57.895 0.00 0.00 0.00 3.82
4082 5347 2.027073 AGCCATGCGTACACACACG 61.027 57.895 0.00 0.00 44.71 4.49
4083 5348 2.314647 GCCATGCGTACACACACGT 61.315 57.895 0.00 0.00 43.79 4.49
4084 5349 1.779061 CCATGCGTACACACACGTC 59.221 57.895 0.00 0.00 43.79 4.34
4085 5350 0.666274 CCATGCGTACACACACGTCT 60.666 55.000 0.00 0.00 43.79 4.18
4086 5351 0.434628 CATGCGTACACACACGTCTG 59.565 55.000 0.00 0.00 43.79 3.51
4087 5352 1.282248 ATGCGTACACACACGTCTGC 61.282 55.000 0.00 0.00 43.79 4.26
4088 5353 2.654912 GCGTACACACACGTCTGCC 61.655 63.158 0.00 0.00 43.79 4.85
4089 5354 2.362047 CGTACACACACGTCTGCCG 61.362 63.158 0.00 0.00 44.03 5.69
4090 5355 2.355363 TACACACACGTCTGCCGC 60.355 61.111 0.00 0.00 41.42 6.53
4091 5356 3.851845 TACACACACGTCTGCCGCC 62.852 63.158 0.00 0.00 41.42 6.13
4108 5373 4.726304 CCCCCGGCGGCTGTAAAA 62.726 66.667 23.20 0.00 0.00 1.52
4109 5374 2.673687 CCCCGGCGGCTGTAAAAA 60.674 61.111 23.20 0.00 0.00 1.94
4110 5375 2.696759 CCCCGGCGGCTGTAAAAAG 61.697 63.158 23.20 2.82 0.00 2.27
4111 5376 2.178273 CCGGCGGCTGTAAAAAGC 59.822 61.111 15.42 0.00 42.75 3.51
4118 5383 3.051617 GCTGTAAAAAGCCACCCCT 57.948 52.632 0.00 0.00 37.20 4.79
4119 5384 0.888619 GCTGTAAAAAGCCACCCCTC 59.111 55.000 0.00 0.00 37.20 4.30
4120 5385 1.545841 CTGTAAAAAGCCACCCCTCC 58.454 55.000 0.00 0.00 0.00 4.30
4121 5386 1.075536 CTGTAAAAAGCCACCCCTCCT 59.924 52.381 0.00 0.00 0.00 3.69
4122 5387 1.074889 TGTAAAAAGCCACCCCTCCTC 59.925 52.381 0.00 0.00 0.00 3.71
4123 5388 0.326927 TAAAAAGCCACCCCTCCTCG 59.673 55.000 0.00 0.00 0.00 4.63
4124 5389 3.569200 AAAAGCCACCCCTCCTCGC 62.569 63.158 0.00 0.00 0.00 5.03
4134 5399 4.436998 CTCCTCGCCGGTGGACAC 62.437 72.222 16.49 0.00 32.60 3.67
4141 5406 4.778415 CCGGTGGACACGCTCTCG 62.778 72.222 0.00 0.00 42.43 4.04
4152 5417 3.243892 GCTCTCGTTCGCTCGCAG 61.244 66.667 0.00 0.00 0.00 5.18
4153 5418 2.177038 CTCTCGTTCGCTCGCAGT 59.823 61.111 0.00 0.00 0.00 4.40
4154 5419 1.865622 CTCTCGTTCGCTCGCAGTC 60.866 63.158 0.00 0.00 0.00 3.51
4155 5420 2.876645 CTCGTTCGCTCGCAGTCC 60.877 66.667 0.00 0.00 0.00 3.85
4156 5421 4.415332 TCGTTCGCTCGCAGTCCC 62.415 66.667 0.00 0.00 0.00 4.46
4157 5422 4.421479 CGTTCGCTCGCAGTCCCT 62.421 66.667 0.00 0.00 0.00 4.20
4158 5423 2.507324 GTTCGCTCGCAGTCCCTC 60.507 66.667 0.00 0.00 0.00 4.30
4159 5424 2.676822 TTCGCTCGCAGTCCCTCT 60.677 61.111 0.00 0.00 0.00 3.69
4160 5425 2.701780 TTCGCTCGCAGTCCCTCTC 61.702 63.158 0.00 0.00 0.00 3.20
4161 5426 3.137459 CGCTCGCAGTCCCTCTCT 61.137 66.667 0.00 0.00 0.00 3.10
4162 5427 2.804856 GCTCGCAGTCCCTCTCTC 59.195 66.667 0.00 0.00 0.00 3.20
4163 5428 2.781158 GCTCGCAGTCCCTCTCTCC 61.781 68.421 0.00 0.00 0.00 3.71
4164 5429 1.077068 CTCGCAGTCCCTCTCTCCT 60.077 63.158 0.00 0.00 0.00 3.69
4165 5430 1.077357 TCGCAGTCCCTCTCTCCTC 60.077 63.158 0.00 0.00 0.00 3.71
4166 5431 2.477176 CGCAGTCCCTCTCTCCTCG 61.477 68.421 0.00 0.00 0.00 4.63
4167 5432 2.781158 GCAGTCCCTCTCTCCTCGC 61.781 68.421 0.00 0.00 0.00 5.03
4168 5433 2.124693 CAGTCCCTCTCTCCTCGCC 61.125 68.421 0.00 0.00 0.00 5.54
4169 5434 3.213402 GTCCCTCTCTCCTCGCCG 61.213 72.222 0.00 0.00 0.00 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.609617 AACGGGATCATATCATTAGGAGAATA 57.390 34.615 0.00 0.00 0.00 1.75
1 2 7.180946 TGAACGGGATCATATCATTAGGAGAAT 59.819 37.037 0.00 0.00 0.00 2.40
2 3 6.496911 TGAACGGGATCATATCATTAGGAGAA 59.503 38.462 0.00 0.00 0.00 2.87
3 4 6.016555 TGAACGGGATCATATCATTAGGAGA 58.983 40.000 0.00 0.00 0.00 3.71
4 5 6.286240 TGAACGGGATCATATCATTAGGAG 57.714 41.667 0.00 0.00 0.00 3.69
5 6 6.440328 TGATGAACGGGATCATATCATTAGGA 59.560 38.462 0.00 0.00 40.08 2.94
6 7 6.643388 TGATGAACGGGATCATATCATTAGG 58.357 40.000 0.00 0.00 40.08 2.69
7 8 8.552083 TTTGATGAACGGGATCATATCATTAG 57.448 34.615 0.00 0.00 40.08 1.73
8 9 8.949177 CATTTGATGAACGGGATCATATCATTA 58.051 33.333 0.00 0.00 40.08 1.90
9 10 7.666804 TCATTTGATGAACGGGATCATATCATT 59.333 33.333 0.00 0.00 40.08 2.57
10 11 7.120285 GTCATTTGATGAACGGGATCATATCAT 59.880 37.037 0.00 0.00 41.69 2.45
11 12 6.427853 GTCATTTGATGAACGGGATCATATCA 59.572 38.462 0.00 0.00 41.69 2.15
12 13 6.427853 TGTCATTTGATGAACGGGATCATATC 59.572 38.462 0.00 0.00 41.69 1.63
13 14 6.298361 TGTCATTTGATGAACGGGATCATAT 58.702 36.000 0.00 0.00 41.69 1.78
14 15 5.679601 TGTCATTTGATGAACGGGATCATA 58.320 37.500 0.00 0.00 41.69 2.15
15 16 4.525996 TGTCATTTGATGAACGGGATCAT 58.474 39.130 0.00 0.91 41.69 2.45
16 17 3.949132 TGTCATTTGATGAACGGGATCA 58.051 40.909 0.00 0.00 41.69 2.92
17 18 4.662145 GTTGTCATTTGATGAACGGGATC 58.338 43.478 0.00 0.00 41.69 3.36
18 19 3.126858 CGTTGTCATTTGATGAACGGGAT 59.873 43.478 14.93 0.00 41.69 3.85
19 20 2.482336 CGTTGTCATTTGATGAACGGGA 59.518 45.455 14.93 0.00 41.69 5.14
20 21 2.850321 CGTTGTCATTTGATGAACGGG 58.150 47.619 14.93 0.00 41.69 5.28
21 22 2.241722 GCGTTGTCATTTGATGAACGG 58.758 47.619 20.19 9.40 41.69 4.44
22 23 2.914861 TGCGTTGTCATTTGATGAACG 58.085 42.857 16.98 16.98 41.69 3.95
23 24 4.229096 ACATGCGTTGTCATTTGATGAAC 58.771 39.130 0.00 0.00 41.69 3.18
24 25 4.502171 ACATGCGTTGTCATTTGATGAA 57.498 36.364 0.00 0.00 41.69 2.57
35 36 5.847111 TCCTAACTATAGACATGCGTTGT 57.153 39.130 6.78 0.00 42.79 3.32
36 37 6.533723 TGTTTCCTAACTATAGACATGCGTTG 59.466 38.462 6.78 0.00 35.24 4.10
37 38 6.636705 TGTTTCCTAACTATAGACATGCGTT 58.363 36.000 6.78 0.00 35.24 4.84
38 39 6.216801 TGTTTCCTAACTATAGACATGCGT 57.783 37.500 6.78 0.00 35.24 5.24
39 40 8.812147 TTATGTTTCCTAACTATAGACATGCG 57.188 34.615 6.78 0.00 35.24 4.73
65 66 6.863275 TGACTAGCTCGTTAATCAAAGATGA 58.137 36.000 0.00 0.00 40.57 2.92
66 67 7.276658 ACTTGACTAGCTCGTTAATCAAAGATG 59.723 37.037 0.00 0.00 0.00 2.90
67 68 7.324178 ACTTGACTAGCTCGTTAATCAAAGAT 58.676 34.615 0.00 0.00 0.00 2.40
68 69 6.688578 ACTTGACTAGCTCGTTAATCAAAGA 58.311 36.000 0.00 0.00 0.00 2.52
69 70 6.952935 ACTTGACTAGCTCGTTAATCAAAG 57.047 37.500 0.00 0.00 0.00 2.77
70 71 7.823665 TCTACTTGACTAGCTCGTTAATCAAA 58.176 34.615 0.00 0.00 0.00 2.69
71 72 7.387119 TCTACTTGACTAGCTCGTTAATCAA 57.613 36.000 0.00 0.00 0.00 2.57
72 73 6.038382 CCTCTACTTGACTAGCTCGTTAATCA 59.962 42.308 0.00 0.00 0.00 2.57
73 74 6.432107 CCTCTACTTGACTAGCTCGTTAATC 58.568 44.000 0.00 0.00 0.00 1.75
74 75 5.221087 GCCTCTACTTGACTAGCTCGTTAAT 60.221 44.000 0.00 0.00 0.00 1.40
75 76 4.096081 GCCTCTACTTGACTAGCTCGTTAA 59.904 45.833 0.00 0.00 0.00 2.01
76 77 3.626670 GCCTCTACTTGACTAGCTCGTTA 59.373 47.826 0.00 0.00 0.00 3.18
77 78 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
78 79 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
79 80 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
80 81 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
81 82 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
82 83 5.182380 CCTAGTATGCCTCTACTTGACTAGC 59.818 48.000 0.00 0.00 35.60 3.42
83 84 5.708230 CCCTAGTATGCCTCTACTTGACTAG 59.292 48.000 0.00 0.00 36.32 2.57
84 85 5.371769 TCCCTAGTATGCCTCTACTTGACTA 59.628 44.000 0.00 0.00 33.96 2.59
85 86 4.168283 TCCCTAGTATGCCTCTACTTGACT 59.832 45.833 0.00 0.00 33.96 3.41
86 87 4.278919 GTCCCTAGTATGCCTCTACTTGAC 59.721 50.000 0.00 0.00 33.96 3.18
87 88 4.079385 TGTCCCTAGTATGCCTCTACTTGA 60.079 45.833 0.00 0.00 33.96 3.02
88 89 4.038162 GTGTCCCTAGTATGCCTCTACTTG 59.962 50.000 0.00 0.00 33.96 3.16
89 90 4.079096 AGTGTCCCTAGTATGCCTCTACTT 60.079 45.833 0.00 0.00 33.96 2.24
90 91 3.464080 AGTGTCCCTAGTATGCCTCTACT 59.536 47.826 0.00 0.00 36.04 2.57
91 92 3.834938 AGTGTCCCTAGTATGCCTCTAC 58.165 50.000 0.00 0.00 0.00 2.59
92 93 5.074652 ACATAGTGTCCCTAGTATGCCTCTA 59.925 44.000 0.00 0.00 37.44 2.43
93 94 4.140900 ACATAGTGTCCCTAGTATGCCTCT 60.141 45.833 0.00 0.00 37.44 3.69
94 95 4.153411 ACATAGTGTCCCTAGTATGCCTC 58.847 47.826 0.00 0.00 37.44 4.70
95 96 4.200447 ACATAGTGTCCCTAGTATGCCT 57.800 45.455 0.00 0.00 37.44 4.75
96 97 6.014499 ACAATACATAGTGTCCCTAGTATGCC 60.014 42.308 0.00 0.00 37.44 4.40
97 98 6.994221 ACAATACATAGTGTCCCTAGTATGC 58.006 40.000 0.00 0.00 37.44 3.14
113 114 9.836864 ACATGTGTGAATACATAGACAATACAT 57.163 29.630 0.00 0.00 39.17 2.29
118 119 9.665719 ACAATACATGTGTGAATACATAGACAA 57.334 29.630 9.11 0.00 41.93 3.18
134 135 8.784994 TGTATTAACCGAAAACACAATACATGT 58.215 29.630 2.69 2.69 45.34 3.21
135 136 9.613957 TTGTATTAACCGAAAACACAATACATG 57.386 29.630 5.97 0.00 38.16 3.21
141 142 9.666626 CTACAATTGTATTAACCGAAAACACAA 57.333 29.630 18.35 0.00 0.00 3.33
142 143 7.804129 GCTACAATTGTATTAACCGAAAACACA 59.196 33.333 18.35 0.00 0.00 3.72
143 144 7.804129 TGCTACAATTGTATTAACCGAAAACAC 59.196 33.333 18.35 0.00 0.00 3.32
144 145 7.872881 TGCTACAATTGTATTAACCGAAAACA 58.127 30.769 18.35 0.00 0.00 2.83
145 146 8.794406 CATGCTACAATTGTATTAACCGAAAAC 58.206 33.333 18.35 0.00 0.00 2.43
146 147 8.731605 TCATGCTACAATTGTATTAACCGAAAA 58.268 29.630 18.35 0.00 0.00 2.29
147 148 8.270080 TCATGCTACAATTGTATTAACCGAAA 57.730 30.769 18.35 0.00 0.00 3.46
148 149 7.851387 TCATGCTACAATTGTATTAACCGAA 57.149 32.000 18.35 1.29 0.00 4.30
149 150 7.851387 TTCATGCTACAATTGTATTAACCGA 57.149 32.000 18.35 8.24 0.00 4.69
226 227 4.263243 CCTGGAGGAAATATGCCTTAGAGG 60.263 50.000 0.00 2.56 35.44 3.69
227 228 4.263243 CCCTGGAGGAAATATGCCTTAGAG 60.263 50.000 0.00 0.00 38.24 2.43
228 229 3.652869 CCCTGGAGGAAATATGCCTTAGA 59.347 47.826 0.00 0.00 38.24 2.10
229 230 3.812167 GCCCTGGAGGAAATATGCCTTAG 60.812 52.174 0.00 2.43 38.24 2.18
230 231 2.108250 GCCCTGGAGGAAATATGCCTTA 59.892 50.000 0.00 0.00 38.24 2.69
231 232 1.133356 GCCCTGGAGGAAATATGCCTT 60.133 52.381 0.00 0.00 38.24 4.35
232 233 0.480252 GCCCTGGAGGAAATATGCCT 59.520 55.000 0.00 0.00 38.24 4.75
233 234 0.540597 GGCCCTGGAGGAAATATGCC 60.541 60.000 0.00 0.00 38.24 4.40
234 235 0.185901 TGGCCCTGGAGGAAATATGC 59.814 55.000 0.00 0.00 38.24 3.14
235 236 2.310538 GTTGGCCCTGGAGGAAATATG 58.689 52.381 0.00 0.00 38.24 1.78
236 237 1.929494 TGTTGGCCCTGGAGGAAATAT 59.071 47.619 0.00 0.00 38.24 1.28
237 238 1.377690 TGTTGGCCCTGGAGGAAATA 58.622 50.000 0.00 0.00 38.24 1.40
238 239 0.712380 ATGTTGGCCCTGGAGGAAAT 59.288 50.000 0.00 0.00 38.24 2.17
239 240 0.486879 AATGTTGGCCCTGGAGGAAA 59.513 50.000 0.00 0.00 38.24 3.13
240 241 0.486879 AAATGTTGGCCCTGGAGGAA 59.513 50.000 0.00 0.00 38.24 3.36
241 242 1.377690 TAAATGTTGGCCCTGGAGGA 58.622 50.000 0.00 0.00 38.24 3.71
242 243 2.102578 CTTAAATGTTGGCCCTGGAGG 58.897 52.381 0.00 0.00 39.47 4.30
243 244 2.102578 CCTTAAATGTTGGCCCTGGAG 58.897 52.381 0.00 0.00 0.00 3.86
244 245 1.713647 TCCTTAAATGTTGGCCCTGGA 59.286 47.619 0.00 0.00 0.00 3.86
245 246 2.102578 CTCCTTAAATGTTGGCCCTGG 58.897 52.381 0.00 0.00 0.00 4.45
246 247 2.493278 CACTCCTTAAATGTTGGCCCTG 59.507 50.000 0.00 0.00 0.00 4.45
247 248 2.557452 CCACTCCTTAAATGTTGGCCCT 60.557 50.000 0.00 0.00 0.00 5.19
248 249 1.824852 CCACTCCTTAAATGTTGGCCC 59.175 52.381 0.00 0.00 0.00 5.80
249 250 1.824852 CCCACTCCTTAAATGTTGGCC 59.175 52.381 0.00 0.00 0.00 5.36
250 251 1.204704 GCCCACTCCTTAAATGTTGGC 59.795 52.381 0.00 0.00 35.81 4.52
251 252 2.493278 CTGCCCACTCCTTAAATGTTGG 59.507 50.000 0.00 0.00 0.00 3.77
252 253 3.191371 GTCTGCCCACTCCTTAAATGTTG 59.809 47.826 0.00 0.00 0.00 3.33
253 254 3.421844 GTCTGCCCACTCCTTAAATGTT 58.578 45.455 0.00 0.00 0.00 2.71
254 255 2.615493 CGTCTGCCCACTCCTTAAATGT 60.615 50.000 0.00 0.00 0.00 2.71
255 256 2.009774 CGTCTGCCCACTCCTTAAATG 58.990 52.381 0.00 0.00 0.00 2.32
256 257 1.628846 ACGTCTGCCCACTCCTTAAAT 59.371 47.619 0.00 0.00 0.00 1.40
257 258 1.053424 ACGTCTGCCCACTCCTTAAA 58.947 50.000 0.00 0.00 0.00 1.52
258 259 1.053424 AACGTCTGCCCACTCCTTAA 58.947 50.000 0.00 0.00 0.00 1.85
259 260 0.320374 CAACGTCTGCCCACTCCTTA 59.680 55.000 0.00 0.00 0.00 2.69
260 261 1.071471 CAACGTCTGCCCACTCCTT 59.929 57.895 0.00 0.00 0.00 3.36
261 262 2.100879 GACAACGTCTGCCCACTCCT 62.101 60.000 0.00 0.00 0.00 3.69
262 263 1.668151 GACAACGTCTGCCCACTCC 60.668 63.158 0.00 0.00 0.00 3.85
263 264 1.668151 GGACAACGTCTGCCCACTC 60.668 63.158 0.00 0.00 32.47 3.51
264 265 2.426023 GGACAACGTCTGCCCACT 59.574 61.111 0.00 0.00 32.47 4.00
265 266 3.041940 CGGACAACGTCTGCCCAC 61.042 66.667 0.00 0.00 37.93 4.61
278 279 2.105766 ACCCTAGTTATGTCCACGGAC 58.894 52.381 9.38 9.38 44.77 4.79
279 280 2.537633 ACCCTAGTTATGTCCACGGA 57.462 50.000 0.00 0.00 0.00 4.69
280 281 3.559069 TCTACCCTAGTTATGTCCACGG 58.441 50.000 0.00 0.00 0.00 4.94
281 282 5.786264 AATCTACCCTAGTTATGTCCACG 57.214 43.478 0.00 0.00 0.00 4.94
282 283 5.758784 GCAAATCTACCCTAGTTATGTCCAC 59.241 44.000 0.00 0.00 0.00 4.02
283 284 5.665812 AGCAAATCTACCCTAGTTATGTCCA 59.334 40.000 0.00 0.00 0.00 4.02
284 285 6.042208 AGAGCAAATCTACCCTAGTTATGTCC 59.958 42.308 0.00 0.00 36.10 4.02
285 286 7.056844 AGAGCAAATCTACCCTAGTTATGTC 57.943 40.000 0.00 0.00 36.10 3.06
286 287 7.439108 AAGAGCAAATCTACCCTAGTTATGT 57.561 36.000 0.00 0.00 37.23 2.29
287 288 8.421784 TGTAAGAGCAAATCTACCCTAGTTATG 58.578 37.037 0.00 0.00 37.23 1.90
288 289 8.548880 TGTAAGAGCAAATCTACCCTAGTTAT 57.451 34.615 0.00 0.00 37.23 1.89
289 290 7.966339 TGTAAGAGCAAATCTACCCTAGTTA 57.034 36.000 0.00 0.00 37.23 2.24
290 291 6.869206 TGTAAGAGCAAATCTACCCTAGTT 57.131 37.500 0.00 0.00 37.23 2.24
291 292 6.630638 GCTTGTAAGAGCAAATCTACCCTAGT 60.631 42.308 0.00 0.00 42.25 2.57
292 293 5.755861 GCTTGTAAGAGCAAATCTACCCTAG 59.244 44.000 0.00 0.00 42.25 3.02
293 294 5.396436 GGCTTGTAAGAGCAAATCTACCCTA 60.396 44.000 0.00 0.00 44.49 3.53
294 295 4.518249 GCTTGTAAGAGCAAATCTACCCT 58.482 43.478 0.00 0.00 42.25 4.34
295 296 3.628032 GGCTTGTAAGAGCAAATCTACCC 59.372 47.826 0.00 0.00 44.49 3.69
296 297 4.261801 TGGCTTGTAAGAGCAAATCTACC 58.738 43.478 0.00 0.00 44.49 3.18
297 298 5.880054 TTGGCTTGTAAGAGCAAATCTAC 57.120 39.130 0.00 0.00 44.49 2.59
298 299 6.892658 TTTTGGCTTGTAAGAGCAAATCTA 57.107 33.333 0.00 0.00 44.49 1.98
299 300 5.789643 TTTTGGCTTGTAAGAGCAAATCT 57.210 34.783 0.00 0.00 44.49 2.40
323 324 8.090214 CCAAAATGTCTGGATTTACAACAAGAT 58.910 33.333 0.00 0.00 35.85 2.40
325 326 7.432869 TCCAAAATGTCTGGATTTACAACAAG 58.567 34.615 0.00 0.00 38.07 3.16
326 327 7.353414 TCCAAAATGTCTGGATTTACAACAA 57.647 32.000 0.00 0.00 38.07 2.83
336 337 5.885449 AACCAAAATCCAAAATGTCTGGA 57.115 34.783 0.00 0.00 46.86 3.86
337 338 5.821995 ACAAACCAAAATCCAAAATGTCTGG 59.178 36.000 0.00 0.00 35.05 3.86
338 339 6.923928 ACAAACCAAAATCCAAAATGTCTG 57.076 33.333 0.00 0.00 0.00 3.51
339 340 7.337938 AGAACAAACCAAAATCCAAAATGTCT 58.662 30.769 0.00 0.00 0.00 3.41
340 341 7.552458 AGAACAAACCAAAATCCAAAATGTC 57.448 32.000 0.00 0.00 0.00 3.06
341 342 7.936496 AAGAACAAACCAAAATCCAAAATGT 57.064 28.000 0.00 0.00 0.00 2.71
342 343 9.323985 TCTAAGAACAAACCAAAATCCAAAATG 57.676 29.630 0.00 0.00 0.00 2.32
344 345 9.898152 AATCTAAGAACAAACCAAAATCCAAAA 57.102 25.926 0.00 0.00 0.00 2.44
345 346 9.323985 CAATCTAAGAACAAACCAAAATCCAAA 57.676 29.630 0.00 0.00 0.00 3.28
361 363 8.055790 TGTCTCTAGATCTGTCCAATCTAAGAA 58.944 37.037 5.18 0.00 35.78 2.52
362 364 7.578203 TGTCTCTAGATCTGTCCAATCTAAGA 58.422 38.462 5.18 0.00 35.78 2.10
363 365 7.815840 TGTCTCTAGATCTGTCCAATCTAAG 57.184 40.000 5.18 0.00 35.78 2.18
374 376 4.578516 ACTGATCGGTTGTCTCTAGATCTG 59.421 45.833 5.18 8.41 40.62 2.90
375 377 4.578516 CACTGATCGGTTGTCTCTAGATCT 59.421 45.833 3.84 0.00 38.68 2.75
377 379 4.527944 TCACTGATCGGTTGTCTCTAGAT 58.472 43.478 3.84 0.00 0.00 1.98
379 381 4.703645 TTCACTGATCGGTTGTCTCTAG 57.296 45.455 3.84 0.00 0.00 2.43
381 383 4.021104 TGATTTCACTGATCGGTTGTCTCT 60.021 41.667 3.84 0.00 0.00 3.10
403 405 1.136252 CAGGTTTTGCGACTCGTGATG 60.136 52.381 0.00 0.00 0.00 3.07
409 411 1.244019 ATGGCCAGGTTTTGCGACTC 61.244 55.000 13.05 0.00 0.00 3.36
410 412 0.037590 TATGGCCAGGTTTTGCGACT 59.962 50.000 13.05 0.00 0.00 4.18
412 414 1.102154 CATATGGCCAGGTTTTGCGA 58.898 50.000 13.05 0.00 0.00 5.10
414 416 1.410153 CCTCATATGGCCAGGTTTTGC 59.590 52.381 13.05 0.00 0.00 3.68
416 418 1.780503 GCCTCATATGGCCAGGTTTT 58.219 50.000 13.05 0.00 46.82 2.43
454 456 1.269413 GGCCGAAATTCCATGCTCATG 60.269 52.381 2.97 2.97 38.51 3.07
455 457 1.035139 GGCCGAAATTCCATGCTCAT 58.965 50.000 0.00 0.00 0.00 2.90
456 458 1.037030 GGGCCGAAATTCCATGCTCA 61.037 55.000 0.00 0.00 0.00 4.26
457 459 1.735973 GGGCCGAAATTCCATGCTC 59.264 57.895 0.00 0.00 0.00 4.26
458 460 2.120909 CGGGCCGAAATTCCATGCT 61.121 57.895 24.41 0.00 0.00 3.79
462 464 1.078285 GTACCGGGCCGAAATTCCA 60.078 57.895 30.79 0.34 0.00 3.53
477 479 2.202401 GTCGAGTCGGGCACGTAC 60.202 66.667 8.89 5.44 41.85 3.67
478 480 2.669229 TGTCGAGTCGGGCACGTA 60.669 61.111 8.89 0.00 41.85 3.57
480 482 3.948086 GAGTGTCGAGTCGGGCACG 62.948 68.421 24.35 0.00 37.84 5.34
481 483 2.126424 GAGTGTCGAGTCGGGCAC 60.126 66.667 23.77 23.77 35.09 5.01
488 490 4.969484 ACCCTTTTAATTGAGTGTCGAGT 58.031 39.130 0.00 0.00 0.00 4.18
490 492 4.517453 CCAACCCTTTTAATTGAGTGTCGA 59.483 41.667 0.00 0.00 0.00 4.20
491 493 4.517453 TCCAACCCTTTTAATTGAGTGTCG 59.483 41.667 0.00 0.00 0.00 4.35
497 499 3.576550 GCTGGTCCAACCCTTTTAATTGA 59.423 43.478 0.00 0.00 37.50 2.57
499 501 2.903784 GGCTGGTCCAACCCTTTTAATT 59.096 45.455 0.00 0.00 37.50 1.40
507 509 1.303643 CTGAAGGCTGGTCCAACCC 60.304 63.158 7.75 3.97 37.50 4.11
511 513 4.020617 CGGCTGAAGGCTGGTCCA 62.021 66.667 2.15 0.00 43.23 4.02
517 519 3.790416 TTTGTGGCGGCTGAAGGCT 62.790 57.895 11.43 0.00 41.46 4.58
518 520 2.855514 TTTTGTGGCGGCTGAAGGC 61.856 57.895 11.43 0.00 40.90 4.35
524 526 1.733526 GTCTTGTTTTGTGGCGGCT 59.266 52.632 11.43 0.00 0.00 5.52
528 530 1.068541 GGATCGGTCTTGTTTTGTGGC 60.069 52.381 0.00 0.00 0.00 5.01
529 531 1.539827 GGGATCGGTCTTGTTTTGTGG 59.460 52.381 0.00 0.00 0.00 4.17
531 533 2.649531 TGGGATCGGTCTTGTTTTGT 57.350 45.000 0.00 0.00 0.00 2.83
532 534 4.485163 GATTTGGGATCGGTCTTGTTTTG 58.515 43.478 0.00 0.00 0.00 2.44
533 535 3.509967 GGATTTGGGATCGGTCTTGTTTT 59.490 43.478 0.00 0.00 0.00 2.43
534 536 3.089284 GGATTTGGGATCGGTCTTGTTT 58.911 45.455 0.00 0.00 0.00 2.83
535 537 2.041081 TGGATTTGGGATCGGTCTTGTT 59.959 45.455 0.00 0.00 0.00 2.83
536 538 1.633432 TGGATTTGGGATCGGTCTTGT 59.367 47.619 0.00 0.00 0.00 3.16
537 539 2.292267 CTGGATTTGGGATCGGTCTTG 58.708 52.381 0.00 0.00 0.00 3.02
538 540 1.212935 CCTGGATTTGGGATCGGTCTT 59.787 52.381 0.00 0.00 0.00 3.01
539 541 0.839946 CCTGGATTTGGGATCGGTCT 59.160 55.000 0.00 0.00 0.00 3.85
540 542 0.819666 GCCTGGATTTGGGATCGGTC 60.820 60.000 0.00 0.00 0.00 4.79
541 543 1.227383 GCCTGGATTTGGGATCGGT 59.773 57.895 0.00 0.00 0.00 4.69
542 544 1.529244 GGCCTGGATTTGGGATCGG 60.529 63.158 0.00 0.00 0.00 4.18
544 546 3.225940 CTTAAGGCCTGGATTTGGGATC 58.774 50.000 5.69 0.00 0.00 3.36
545 547 2.091111 CCTTAAGGCCTGGATTTGGGAT 60.091 50.000 5.69 0.00 0.00 3.85
546 548 1.287739 CCTTAAGGCCTGGATTTGGGA 59.712 52.381 5.69 0.00 0.00 4.37
547 549 1.780503 CCTTAAGGCCTGGATTTGGG 58.219 55.000 5.69 0.00 0.00 4.12
561 565 1.377987 GTGTCATGCCCGGCCTTAA 60.378 57.895 7.03 0.00 0.00 1.85
574 578 5.582665 GCCCACAGTTAAAAATTTTGTGTCA 59.417 36.000 15.34 0.00 37.91 3.58
575 579 5.007234 GGCCCACAGTTAAAAATTTTGTGTC 59.993 40.000 15.34 8.87 37.91 3.67
581 585 3.385111 TGTCGGCCCACAGTTAAAAATTT 59.615 39.130 0.00 0.00 0.00 1.82
583 587 2.588620 TGTCGGCCCACAGTTAAAAAT 58.411 42.857 0.00 0.00 0.00 1.82
589 593 2.113139 CCTTGTCGGCCCACAGTT 59.887 61.111 2.64 0.00 0.00 3.16
710 750 9.949174 CGGAAATTCAGAAAATTCCAAAAATTT 57.051 25.926 22.04 2.12 42.38 1.82
711 751 9.336171 TCGGAAATTCAGAAAATTCCAAAAATT 57.664 25.926 22.04 0.00 42.38 1.82
712 752 8.900983 TCGGAAATTCAGAAAATTCCAAAAAT 57.099 26.923 22.04 0.00 42.38 1.82
713 753 8.723942 TTCGGAAATTCAGAAAATTCCAAAAA 57.276 26.923 22.04 14.00 42.38 1.94
714 754 8.723942 TTTCGGAAATTCAGAAAATTCCAAAA 57.276 26.923 22.04 16.64 42.38 2.44
715 755 8.723942 TTTTCGGAAATTCAGAAAATTCCAAA 57.276 26.923 23.19 18.39 42.54 3.28
716 756 8.608317 GTTTTTCGGAAATTCAGAAAATTCCAA 58.392 29.630 25.94 13.71 45.13 3.53
717 757 7.766278 TGTTTTTCGGAAATTCAGAAAATTCCA 59.234 29.630 25.94 20.64 45.13 3.53
718 758 8.137210 TGTTTTTCGGAAATTCAGAAAATTCC 57.863 30.769 25.94 19.05 45.13 3.01
719 759 9.980780 TTTGTTTTTCGGAAATTCAGAAAATTC 57.019 25.926 25.94 21.92 45.13 2.17
720 760 9.767684 GTTTGTTTTTCGGAAATTCAGAAAATT 57.232 25.926 25.94 0.00 45.13 1.82
721 761 8.113675 CGTTTGTTTTTCGGAAATTCAGAAAAT 58.886 29.630 25.94 0.00 45.13 1.82
722 762 7.412020 CCGTTTGTTTTTCGGAAATTCAGAAAA 60.412 33.333 23.19 23.19 44.51 2.29
723 763 6.035112 CCGTTTGTTTTTCGGAAATTCAGAAA 59.965 34.615 15.34 15.34 46.05 2.52
724 764 5.517054 CCGTTTGTTTTTCGGAAATTCAGAA 59.483 36.000 3.67 4.51 46.05 3.02
725 765 5.038033 CCGTTTGTTTTTCGGAAATTCAGA 58.962 37.500 3.67 0.00 46.05 3.27
734 774 1.874872 TCTAGGCCGTTTGTTTTTCGG 59.125 47.619 0.00 0.00 45.94 4.30
736 776 4.823790 TCTTCTAGGCCGTTTGTTTTTC 57.176 40.909 0.00 0.00 0.00 2.29
751 791 3.122278 CCGCGTTGTTTTTCGATCTTCTA 59.878 43.478 4.92 0.00 0.00 2.10
758 798 2.328639 GCCCGCGTTGTTTTTCGA 59.671 55.556 4.92 0.00 0.00 3.71
769 809 4.612412 TATAAAGGCCGGCCCGCG 62.612 66.667 41.72 0.00 39.21 6.46
770 810 2.203238 TTATAAAGGCCGGCCCGC 60.203 61.111 41.72 18.27 39.21 6.13
771 811 1.147600 AGTTATAAAGGCCGGCCCG 59.852 57.895 41.72 0.00 39.21 6.13
772 812 0.822121 CCAGTTATAAAGGCCGGCCC 60.822 60.000 41.72 24.24 36.58 5.80
827 886 2.669229 CACAGCATGGCCGTGTCA 60.669 61.111 25.67 0.00 43.62 3.58
841 900 2.093500 CAGCTGTAATAGGTCTGGCACA 60.093 50.000 5.25 0.00 34.17 4.57
843 902 1.486310 CCAGCTGTAATAGGTCTGGCA 59.514 52.381 13.81 0.00 38.00 4.92
844 903 1.202698 CCCAGCTGTAATAGGTCTGGC 60.203 57.143 13.81 0.00 42.13 4.85
845 904 1.202698 GCCCAGCTGTAATAGGTCTGG 60.203 57.143 13.81 3.40 42.87 3.86
846 905 1.202698 GGCCCAGCTGTAATAGGTCTG 60.203 57.143 13.81 0.00 34.17 3.51
848 907 0.249911 CGGCCCAGCTGTAATAGGTC 60.250 60.000 13.81 6.73 34.17 3.85
849 908 0.689745 TCGGCCCAGCTGTAATAGGT 60.690 55.000 13.81 0.00 36.18 3.08
850 909 0.034059 CTCGGCCCAGCTGTAATAGG 59.966 60.000 13.81 7.30 36.18 2.57
851 910 0.601311 GCTCGGCCCAGCTGTAATAG 60.601 60.000 15.96 4.58 36.38 1.73
853 912 2.190578 GCTCGGCCCAGCTGTAAT 59.809 61.111 15.96 0.00 36.38 1.89
870 929 2.033141 CCATATGGGCCTGCTCGG 59.967 66.667 14.52 0.00 0.00 4.63
918 977 3.219224 CCTGAGAGGCTGAGAGGC 58.781 66.667 0.00 0.00 41.73 4.70
1687 2052 1.447314 GAACCAGAGGTAACCGGCG 60.447 63.158 0.00 0.00 33.12 6.46
1693 2058 2.637382 TGCAGTGATGAACCAGAGGTAA 59.363 45.455 0.00 0.00 33.12 2.85
1849 2214 0.105778 CGAGATCCTTCTCCCTTGGC 59.894 60.000 0.00 0.00 44.76 4.52
1873 2238 4.706842 TTTCAGCCTCTTCTTGGTTAGT 57.293 40.909 0.00 0.00 0.00 2.24
1878 2243 3.146104 TCCTTTTCAGCCTCTTCTTGG 57.854 47.619 0.00 0.00 0.00 3.61
2009 2374 1.895131 GCAATGCCCATATTCCGGAAT 59.105 47.619 31.30 31.30 34.93 3.01
2011 2376 0.888736 CGCAATGCCCATATTCCGGA 60.889 55.000 0.00 0.00 0.00 5.14
2155 2520 4.043608 CCAAGATGGATTATGGCATCCT 57.956 45.455 1.65 0.00 43.12 3.24
2161 2526 3.181436 ACTCAGGCCAAGATGGATTATGG 60.181 47.826 5.01 0.00 40.96 2.74
2218 2583 6.438620 AGAGCCAAATCTAAGGAAATCCATT 58.561 36.000 1.67 0.00 38.89 3.16
2272 2637 2.761208 CCTTATCTCAACCACGTCCTCT 59.239 50.000 0.00 0.00 0.00 3.69
2280 2645 2.912956 AGTTGCCTCCTTATCTCAACCA 59.087 45.455 0.00 0.00 38.13 3.67
2350 2715 2.038820 TGTGATGTGCTCAATCTCCACA 59.961 45.455 0.00 0.00 42.87 4.17
2437 3694 0.251297 CAATGTTCCCTCCACTGGCA 60.251 55.000 0.00 0.00 0.00 4.92
2567 3824 0.892755 AGCATTGGTGAACATGGCAG 59.107 50.000 0.00 0.00 32.68 4.85
2569 3826 0.604578 ACAGCATTGGTGAACATGGC 59.395 50.000 21.85 0.00 34.87 4.40
2572 3829 4.005650 CAGAGTACAGCATTGGTGAACAT 58.994 43.478 21.85 2.59 34.87 2.71
2602 3859 6.486253 TTGTTCATCTGAGAATTAGTGTGC 57.514 37.500 0.00 0.00 0.00 4.57
2694 3951 5.348997 GCCAAAGAGCTCCGTATAACATATC 59.651 44.000 10.93 0.00 0.00 1.63
2854 4111 7.554835 TGTACACCCTCAATAATATCAACAACC 59.445 37.037 0.00 0.00 0.00 3.77
3052 4309 1.552792 TGCCACACCATCTTCGATACA 59.447 47.619 0.00 0.00 0.00 2.29
3100 4357 9.748708 TCATTTAATTTCTTTGAGACCTTGTTG 57.251 29.630 0.00 0.00 0.00 3.33
3105 4362 9.312904 TCCATTCATTTAATTTCTTTGAGACCT 57.687 29.630 0.00 0.00 0.00 3.85
3141 4398 1.168714 GTCCCCATTGACAGCTTCAC 58.831 55.000 0.00 0.00 35.29 3.18
3297 4555 5.754782 ACATCACCCATTAGTATTCTGCAA 58.245 37.500 0.00 0.00 0.00 4.08
3314 4572 4.360563 CTGGTAGGTCGTTGATACATCAC 58.639 47.826 0.00 0.00 36.36 3.06
3346 4604 9.768662 AAATATTTGCCCAATGATACATTTCTC 57.231 29.630 0.00 0.00 0.00 2.87
3475 4733 9.277783 AGAAAAAGAATGGGATAATATGTCTCG 57.722 33.333 0.00 0.00 0.00 4.04
3532 4791 9.609346 AACTACAAACAACACATTCTTACTACT 57.391 29.630 0.00 0.00 0.00 2.57
3571 4830 6.662865 TTTTCATTGTAATCCCAGCTTTCA 57.337 33.333 0.00 0.00 0.00 2.69
3572 4831 8.445493 CAAATTTTCATTGTAATCCCAGCTTTC 58.555 33.333 0.00 0.00 0.00 2.62
3703 4968 4.459089 GGGCGAGTGGAGGTGCTC 62.459 72.222 0.00 0.00 0.00 4.26
3724 4989 4.382541 GGGCCTTGTTGGAGGGGG 62.383 72.222 0.84 0.00 37.29 5.40
3725 4990 4.382541 GGGGCCTTGTTGGAGGGG 62.383 72.222 0.84 0.00 37.29 4.79
3726 4991 4.382541 GGGGGCCTTGTTGGAGGG 62.383 72.222 0.84 0.00 37.29 4.30
3772 5037 3.656045 CGCGACTGGGCCGTTTTT 61.656 61.111 0.00 0.00 0.00 1.94
3789 5054 1.826340 AAATTTGTGCTTCCGGGGGC 61.826 55.000 0.00 7.15 0.00 5.80
3790 5055 0.246360 GAAATTTGTGCTTCCGGGGG 59.754 55.000 0.00 0.00 0.00 5.40
3791 5056 0.109319 CGAAATTTGTGCTTCCGGGG 60.109 55.000 0.00 0.00 0.00 5.73
3792 5057 0.732538 GCGAAATTTGTGCTTCCGGG 60.733 55.000 0.00 0.00 0.00 5.73
3793 5058 0.240945 AGCGAAATTTGTGCTTCCGG 59.759 50.000 8.36 0.00 34.80 5.14
3794 5059 1.330306 CAGCGAAATTTGTGCTTCCG 58.670 50.000 10.91 1.03 36.69 4.30
3795 5060 1.000274 ACCAGCGAAATTTGTGCTTCC 60.000 47.619 10.91 0.00 36.69 3.46
3796 5061 2.422276 ACCAGCGAAATTTGTGCTTC 57.578 45.000 10.91 0.00 36.69 3.86
3797 5062 2.888834 AACCAGCGAAATTTGTGCTT 57.111 40.000 10.91 0.00 36.69 3.91
3798 5063 2.228822 CCTAACCAGCGAAATTTGTGCT 59.771 45.455 8.36 8.36 40.16 4.40
3799 5064 2.595386 CCTAACCAGCGAAATTTGTGC 58.405 47.619 0.00 0.00 0.00 4.57
3800 5065 2.671070 GCCCTAACCAGCGAAATTTGTG 60.671 50.000 0.00 0.00 0.00 3.33
3801 5066 1.544246 GCCCTAACCAGCGAAATTTGT 59.456 47.619 0.00 0.00 0.00 2.83
3802 5067 1.135112 GGCCCTAACCAGCGAAATTTG 60.135 52.381 0.00 0.00 0.00 2.32
3803 5068 1.182667 GGCCCTAACCAGCGAAATTT 58.817 50.000 0.00 0.00 0.00 1.82
3804 5069 1.029947 CGGCCCTAACCAGCGAAATT 61.030 55.000 0.00 0.00 0.00 1.82
3805 5070 1.451387 CGGCCCTAACCAGCGAAAT 60.451 57.895 0.00 0.00 0.00 2.17
3806 5071 2.046700 CGGCCCTAACCAGCGAAA 60.047 61.111 0.00 0.00 0.00 3.46
3807 5072 2.114488 TTTCGGCCCTAACCAGCGAA 62.114 55.000 0.00 0.00 0.00 4.70
3808 5073 1.906105 ATTTCGGCCCTAACCAGCGA 61.906 55.000 0.00 0.00 0.00 4.93
3809 5074 1.029947 AATTTCGGCCCTAACCAGCG 61.030 55.000 0.00 0.00 0.00 5.18
3810 5075 0.455815 CAATTTCGGCCCTAACCAGC 59.544 55.000 0.00 0.00 0.00 4.85
3811 5076 1.102978 CCAATTTCGGCCCTAACCAG 58.897 55.000 0.00 0.00 0.00 4.00
3812 5077 3.274601 CCAATTTCGGCCCTAACCA 57.725 52.632 0.00 0.00 0.00 3.67
3880 5145 1.006220 CAAAAACGCTTCCCCCAGC 60.006 57.895 0.00 0.00 36.33 4.85
3881 5146 1.112916 ACCAAAAACGCTTCCCCCAG 61.113 55.000 0.00 0.00 0.00 4.45
3882 5147 1.075896 ACCAAAAACGCTTCCCCCA 60.076 52.632 0.00 0.00 0.00 4.96
3883 5148 1.365999 CACCAAAAACGCTTCCCCC 59.634 57.895 0.00 0.00 0.00 5.40
3884 5149 1.300620 GCACCAAAAACGCTTCCCC 60.301 57.895 0.00 0.00 0.00 4.81
3885 5150 1.660264 CGCACCAAAAACGCTTCCC 60.660 57.895 0.00 0.00 0.00 3.97
3886 5151 0.248702 TTCGCACCAAAAACGCTTCC 60.249 50.000 0.00 0.00 0.00 3.46
3887 5152 1.516864 CTTTCGCACCAAAAACGCTTC 59.483 47.619 0.00 0.00 0.00 3.86
3888 5153 1.135228 ACTTTCGCACCAAAAACGCTT 60.135 42.857 0.00 0.00 0.00 4.68
3889 5154 0.454196 ACTTTCGCACCAAAAACGCT 59.546 45.000 0.00 0.00 0.00 5.07
3890 5155 0.843872 GACTTTCGCACCAAAAACGC 59.156 50.000 0.00 0.00 0.00 4.84
3891 5156 1.472990 GGACTTTCGCACCAAAAACG 58.527 50.000 0.00 0.00 0.00 3.60
3892 5157 1.135333 TGGGACTTTCGCACCAAAAAC 59.865 47.619 0.00 0.00 34.23 2.43
3893 5158 1.475403 TGGGACTTTCGCACCAAAAA 58.525 45.000 0.00 0.00 34.23 1.94
3894 5159 3.192799 TGGGACTTTCGCACCAAAA 57.807 47.368 0.00 0.00 34.23 2.44
3895 5160 4.988744 TGGGACTTTCGCACCAAA 57.011 50.000 0.00 0.00 34.23 3.28
3921 5186 4.803426 GGCTGGTCGCTGACTCGG 62.803 72.222 8.26 5.57 39.13 4.63
3937 5202 1.994507 ATGAGGAAGACGAGACGCGG 61.995 60.000 12.47 0.00 46.49 6.46
3939 5204 0.590230 CGATGAGGAAGACGAGACGC 60.590 60.000 0.00 0.00 0.00 5.19
3940 5205 0.590230 GCGATGAGGAAGACGAGACG 60.590 60.000 0.00 0.00 0.00 4.18
3941 5206 0.248702 GGCGATGAGGAAGACGAGAC 60.249 60.000 0.00 0.00 0.00 3.36
3942 5207 0.394488 AGGCGATGAGGAAGACGAGA 60.394 55.000 0.00 0.00 0.00 4.04
3943 5208 0.030101 GAGGCGATGAGGAAGACGAG 59.970 60.000 0.00 0.00 0.00 4.18
3944 5209 1.715862 CGAGGCGATGAGGAAGACGA 61.716 60.000 0.00 0.00 0.00 4.20
3945 5210 1.298713 CGAGGCGATGAGGAAGACG 60.299 63.158 0.00 0.00 0.00 4.18
3946 5211 0.173708 AACGAGGCGATGAGGAAGAC 59.826 55.000 0.00 0.00 0.00 3.01
3947 5212 0.895530 AAACGAGGCGATGAGGAAGA 59.104 50.000 0.00 0.00 0.00 2.87
3948 5213 1.281899 GAAACGAGGCGATGAGGAAG 58.718 55.000 0.00 0.00 0.00 3.46
3949 5214 0.108329 GGAAACGAGGCGATGAGGAA 60.108 55.000 0.00 0.00 0.00 3.36
3950 5215 1.515954 GGAAACGAGGCGATGAGGA 59.484 57.895 0.00 0.00 0.00 3.71
3951 5216 1.521681 GGGAAACGAGGCGATGAGG 60.522 63.158 0.00 0.00 0.00 3.86
3952 5217 4.110493 GGGAAACGAGGCGATGAG 57.890 61.111 0.00 0.00 0.00 2.90
3967 5232 3.595758 GCATTGATTCCCCGCGGG 61.596 66.667 37.99 37.99 46.11 6.13
3968 5233 3.595758 GGCATTGATTCCCCGCGG 61.596 66.667 21.04 21.04 0.00 6.46
3969 5234 2.340453 CTTGGCATTGATTCCCCGCG 62.340 60.000 0.00 0.00 0.00 6.46
3970 5235 1.438814 CTTGGCATTGATTCCCCGC 59.561 57.895 0.00 0.00 0.00 6.13
3971 5236 2.019897 GCCTTGGCATTGATTCCCCG 62.020 60.000 6.79 0.00 0.00 5.73
3972 5237 0.688749 AGCCTTGGCATTGATTCCCC 60.689 55.000 14.54 0.00 0.00 4.81
3973 5238 0.462789 CAGCCTTGGCATTGATTCCC 59.537 55.000 14.54 0.00 0.00 3.97
3974 5239 0.179092 GCAGCCTTGGCATTGATTCC 60.179 55.000 14.54 0.00 0.00 3.01
3975 5240 3.357504 GCAGCCTTGGCATTGATTC 57.642 52.632 14.54 0.00 0.00 2.52
3994 5259 3.976701 AATGGAAGGCTGACCGGCG 62.977 63.158 0.00 0.00 44.22 6.46
3995 5260 2.044946 AATGGAAGGCTGACCGGC 60.045 61.111 0.00 0.00 42.76 6.13
3996 5261 0.107017 ATCAATGGAAGGCTGACCGG 60.107 55.000 0.00 0.00 42.76 5.28
3997 5262 1.672881 GAATCAATGGAAGGCTGACCG 59.327 52.381 6.53 0.00 42.76 4.79
3998 5263 2.027385 GGAATCAATGGAAGGCTGACC 58.973 52.381 4.34 4.34 0.00 4.02
3999 5264 2.027385 GGGAATCAATGGAAGGCTGAC 58.973 52.381 0.00 0.00 0.00 3.51
4000 5265 1.063717 GGGGAATCAATGGAAGGCTGA 60.064 52.381 0.00 0.00 0.00 4.26
4001 5266 1.342275 TGGGGAATCAATGGAAGGCTG 60.342 52.381 0.00 0.00 0.00 4.85
4002 5267 1.009997 TGGGGAATCAATGGAAGGCT 58.990 50.000 0.00 0.00 0.00 4.58
4003 5268 1.114627 GTGGGGAATCAATGGAAGGC 58.885 55.000 0.00 0.00 0.00 4.35
4004 5269 1.392589 CGTGGGGAATCAATGGAAGG 58.607 55.000 0.00 0.00 0.00 3.46
4005 5270 1.392589 CCGTGGGGAATCAATGGAAG 58.607 55.000 0.00 0.00 34.06 3.46
4006 5271 3.586843 CCGTGGGGAATCAATGGAA 57.413 52.632 0.00 0.00 34.06 3.53
4027 5292 2.203070 CCAGGCCATCACTACGCC 60.203 66.667 5.01 0.00 43.35 5.68
4028 5293 2.897350 GCCAGGCCATCACTACGC 60.897 66.667 5.01 0.00 0.00 4.42
4029 5294 2.586079 CGCCAGGCCATCACTACG 60.586 66.667 5.01 0.00 0.00 3.51
4030 5295 1.521681 GTCGCCAGGCCATCACTAC 60.522 63.158 5.01 0.00 0.00 2.73
4031 5296 2.900273 GTCGCCAGGCCATCACTA 59.100 61.111 5.01 0.00 0.00 2.74
4032 5297 4.457496 CGTCGCCAGGCCATCACT 62.457 66.667 5.01 0.00 0.00 3.41
4053 5318 4.181010 CATGGCTGGAGGGGGACG 62.181 72.222 0.00 0.00 0.00 4.79
4054 5319 4.512914 GCATGGCTGGAGGGGGAC 62.513 72.222 0.00 0.00 0.00 4.46
4057 5322 3.479203 TACGCATGGCTGGAGGGG 61.479 66.667 0.00 0.00 0.00 4.79
4058 5323 2.203070 GTACGCATGGCTGGAGGG 60.203 66.667 0.00 0.00 0.00 4.30
4059 5324 1.815421 GTGTACGCATGGCTGGAGG 60.815 63.158 0.39 0.00 0.00 4.30
4060 5325 1.079197 TGTGTACGCATGGCTGGAG 60.079 57.895 4.65 0.00 0.00 3.86
4061 5326 1.375396 GTGTGTACGCATGGCTGGA 60.375 57.895 13.08 0.00 0.00 3.86
4062 5327 1.670730 TGTGTGTACGCATGGCTGG 60.671 57.895 13.08 0.00 0.00 4.85
4063 5328 1.497278 GTGTGTGTACGCATGGCTG 59.503 57.895 13.08 0.00 38.74 4.85
4064 5329 2.027073 CGTGTGTGTACGCATGGCT 61.027 57.895 13.08 0.00 39.13 4.75
4065 5330 2.474266 CGTGTGTGTACGCATGGC 59.526 61.111 13.08 5.22 39.13 4.40
4072 5337 2.654912 GCGGCAGACGTGTGTGTAC 61.655 63.158 14.77 2.09 46.52 2.90
4073 5338 2.355363 GCGGCAGACGTGTGTGTA 60.355 61.111 14.77 0.00 46.52 2.90
4091 5356 4.726304 TTTTACAGCCGCCGGGGG 62.726 66.667 32.37 32.37 35.78 5.40
4092 5357 2.673687 TTTTTACAGCCGCCGGGG 60.674 61.111 12.43 12.43 39.58 5.73
4093 5358 2.874751 CTTTTTACAGCCGCCGGG 59.125 61.111 4.77 0.00 0.00 5.73
4094 5359 2.178273 GCTTTTTACAGCCGCCGG 59.822 61.111 0.00 0.00 33.21 6.13
4100 5365 0.888619 GAGGGGTGGCTTTTTACAGC 59.111 55.000 0.00 0.00 39.28 4.40
4101 5366 1.075536 AGGAGGGGTGGCTTTTTACAG 59.924 52.381 0.00 0.00 0.00 2.74
4102 5367 1.074889 GAGGAGGGGTGGCTTTTTACA 59.925 52.381 0.00 0.00 0.00 2.41
4103 5368 1.835494 GAGGAGGGGTGGCTTTTTAC 58.165 55.000 0.00 0.00 0.00 2.01
4104 5369 0.326927 CGAGGAGGGGTGGCTTTTTA 59.673 55.000 0.00 0.00 0.00 1.52
4105 5370 1.074951 CGAGGAGGGGTGGCTTTTT 59.925 57.895 0.00 0.00 0.00 1.94
4106 5371 2.757077 CGAGGAGGGGTGGCTTTT 59.243 61.111 0.00 0.00 0.00 2.27
4107 5372 4.035102 GCGAGGAGGGGTGGCTTT 62.035 66.667 0.00 0.00 0.00 3.51
4117 5382 4.436998 GTGTCCACCGGCGAGGAG 62.437 72.222 18.98 0.23 45.00 3.69
4124 5389 4.778415 CGAGAGCGTGTCCACCGG 62.778 72.222 0.00 0.00 0.00 5.28
4135 5400 3.243892 CTGCGAGCGAACGAGAGC 61.244 66.667 5.91 0.29 35.09 4.09
4136 5401 1.865622 GACTGCGAGCGAACGAGAG 60.866 63.158 5.91 3.55 35.09 3.20
4137 5402 2.176055 GACTGCGAGCGAACGAGA 59.824 61.111 5.91 0.00 35.09 4.04
4138 5403 2.876645 GGACTGCGAGCGAACGAG 60.877 66.667 5.91 3.65 35.09 4.18
4139 5404 4.415332 GGGACTGCGAGCGAACGA 62.415 66.667 5.91 0.00 35.09 3.85
4140 5405 4.421479 AGGGACTGCGAGCGAACG 62.421 66.667 0.00 0.00 37.18 3.95
4141 5406 2.507324 GAGGGACTGCGAGCGAAC 60.507 66.667 0.00 0.00 41.55 3.95
4142 5407 2.676822 AGAGGGACTGCGAGCGAA 60.677 61.111 0.00 0.00 41.55 4.70
4143 5408 3.134792 GAGAGGGACTGCGAGCGA 61.135 66.667 0.00 0.00 41.55 4.93
4144 5409 3.119709 GAGAGAGGGACTGCGAGCG 62.120 68.421 0.00 0.00 41.55 5.03
4145 5410 2.781158 GGAGAGAGGGACTGCGAGC 61.781 68.421 0.00 0.00 41.55 5.03
4146 5411 1.077068 AGGAGAGAGGGACTGCGAG 60.077 63.158 0.00 0.00 41.55 5.03
4147 5412 1.077357 GAGGAGAGAGGGACTGCGA 60.077 63.158 0.00 0.00 41.55 5.10
4148 5413 2.477176 CGAGGAGAGAGGGACTGCG 61.477 68.421 0.00 0.00 41.55 5.18
4149 5414 2.781158 GCGAGGAGAGAGGGACTGC 61.781 68.421 0.00 0.00 41.55 4.40
4150 5415 2.124693 GGCGAGGAGAGAGGGACTG 61.125 68.421 0.00 0.00 41.55 3.51
4152 5417 3.213402 CGGCGAGGAGAGAGGGAC 61.213 72.222 0.00 0.00 0.00 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.