Multiple sequence alignment - TraesCS7B01G237200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G237200 chr7B 100.000 2474 0 0 1 2474 442025309 442022836 0.000000e+00 4569.0
1 TraesCS7B01G237200 chr7B 82.664 548 71 12 1948 2474 706249521 706248977 4.820000e-127 464.0
2 TraesCS7B01G237200 chr7B 87.019 208 19 4 2275 2474 673301230 673301437 6.880000e-56 228.0
3 TraesCS7B01G237200 chr7B 90.058 171 14 3 2306 2474 388614009 388614178 4.140000e-53 219.0
4 TraesCS7B01G237200 chr7D 90.843 1507 61 25 458 1940 424491985 424490532 0.000000e+00 1947.0
5 TraesCS7B01G237200 chr7A 94.123 1072 41 11 766 1831 508842480 508843535 0.000000e+00 1611.0
6 TraesCS7B01G237200 chr7A 88.889 225 22 3 341 562 508842133 508842357 8.720000e-70 274.0
7 TraesCS7B01G237200 chr7A 94.872 39 2 0 1788 1826 508843903 508843865 7.390000e-06 62.1
8 TraesCS7B01G237200 chr5B 96.727 275 9 0 68 342 459570859 459571133 2.240000e-125 459.0
9 TraesCS7B01G237200 chr5B 96.085 281 10 1 66 346 464139571 464139292 8.060000e-125 457.0
10 TraesCS7B01G237200 chr5B 80.370 540 85 8 1956 2474 479124699 479125238 8.300000e-105 390.0
11 TraesCS7B01G237200 chr5B 79.235 549 61 22 1956 2474 709167634 709167109 1.420000e-87 333.0
12 TraesCS7B01G237200 chr5B 80.526 380 37 16 2105 2474 671872939 671872587 8.780000e-65 257.0
13 TraesCS7B01G237200 chr3A 96.085 281 11 0 65 345 481022568 481022848 2.240000e-125 459.0
14 TraesCS7B01G237200 chr3A 78.621 290 47 11 1128 1411 109342370 109342650 7.030000e-41 178.0
15 TraesCS7B01G237200 chr3A 78.201 289 50 10 1128 1411 109298268 109298548 3.270000e-39 172.0
16 TraesCS7B01G237200 chr6A 96.057 279 11 0 66 344 38758093 38757815 2.900000e-124 455.0
17 TraesCS7B01G237200 chr4B 95.745 282 12 0 66 347 604047296 604047015 2.900000e-124 455.0
18 TraesCS7B01G237200 chr4B 81.111 540 81 8 1956 2474 16816350 16816889 1.770000e-111 412.0
19 TraesCS7B01G237200 chr4B 82.397 267 34 11 2217 2474 644736816 644737078 1.150000e-53 220.0
20 TraesCS7B01G237200 chr4B 96.970 33 1 0 2034 2066 619600908 619600876 3.440000e-04 56.5
21 TraesCS7B01G237200 chr1A 96.057 279 11 0 66 344 524388482 524388204 2.900000e-124 455.0
22 TraesCS7B01G237200 chr6B 95.745 282 11 1 65 346 707744117 707744397 1.040000e-123 453.0
23 TraesCS7B01G237200 chrUn 95.105 286 13 1 66 351 267218700 267218416 1.350000e-122 449.0
24 TraesCS7B01G237200 chrUn 80.074 542 84 10 1956 2474 15601229 15600689 4.990000e-102 381.0
25 TraesCS7B01G237200 chr3B 95.105 286 13 1 66 351 545805421 545805137 1.350000e-122 449.0
26 TraesCS7B01G237200 chr3B 86.387 382 38 7 2100 2472 545480994 545480618 2.960000e-109 405.0
27 TraesCS7B01G237200 chr3B 78.007 291 48 12 1128 1411 167057905 167057624 4.230000e-38 169.0
28 TraesCS7B01G237200 chr3B 77.891 294 48 12 1128 1414 166754368 166754085 1.520000e-37 167.0
29 TraesCS7B01G237200 chr2D 81.818 539 75 14 1956 2474 641567284 641566749 4.890000e-117 431.0
30 TraesCS7B01G237200 chr1B 87.206 383 34 6 2100 2474 654919090 654919465 2.940000e-114 422.0
31 TraesCS7B01G237200 chr1B 81.096 529 70 14 1949 2449 77632318 77631792 1.780000e-106 396.0
32 TraesCS7B01G237200 chr1B 76.854 553 72 31 1954 2474 150840320 150840848 6.790000e-66 261.0
33 TraesCS7B01G237200 chr2B 79.273 550 75 17 1956 2474 737873706 737874247 5.060000e-92 348.0
34 TraesCS7B01G237200 chr2B 87.375 301 30 4 2100 2393 701119582 701119283 3.050000e-89 339.0
35 TraesCS7B01G237200 chr3D 79.094 287 43 12 1132 1411 114022567 114022843 5.440000e-42 182.0
36 TraesCS7B01G237200 chr3D 78.671 286 46 11 1132 1411 113819495 113819771 2.530000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G237200 chr7B 442022836 442025309 2473 True 4569.0 4569 100.000 1 2474 1 chr7B.!!$R1 2473
1 TraesCS7B01G237200 chr7B 706248977 706249521 544 True 464.0 464 82.664 1948 2474 1 chr7B.!!$R2 526
2 TraesCS7B01G237200 chr7D 424490532 424491985 1453 True 1947.0 1947 90.843 458 1940 1 chr7D.!!$R1 1482
3 TraesCS7B01G237200 chr7A 508842133 508843535 1402 False 942.5 1611 91.506 341 1831 2 chr7A.!!$F1 1490
4 TraesCS7B01G237200 chr5B 479124699 479125238 539 False 390.0 390 80.370 1956 2474 1 chr5B.!!$F2 518
5 TraesCS7B01G237200 chr5B 709167109 709167634 525 True 333.0 333 79.235 1956 2474 1 chr5B.!!$R3 518
6 TraesCS7B01G237200 chr4B 16816350 16816889 539 False 412.0 412 81.111 1956 2474 1 chr4B.!!$F1 518
7 TraesCS7B01G237200 chrUn 15600689 15601229 540 True 381.0 381 80.074 1956 2474 1 chrUn.!!$R1 518
8 TraesCS7B01G237200 chr2D 641566749 641567284 535 True 431.0 431 81.818 1956 2474 1 chr2D.!!$R1 518
9 TraesCS7B01G237200 chr1B 77631792 77632318 526 True 396.0 396 81.096 1949 2449 1 chr1B.!!$R1 500
10 TraesCS7B01G237200 chr1B 150840320 150840848 528 False 261.0 261 76.854 1954 2474 1 chr1B.!!$F1 520
11 TraesCS7B01G237200 chr2B 737873706 737874247 541 False 348.0 348 79.273 1956 2474 1 chr2B.!!$F1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 202 0.034756 CCGGAACATCACACACTCCA 59.965 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1709 1793 0.729116 CGGCAGAAATGCATCGAACT 59.271 50.0 0.0 0.0 36.33 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.588817 TTCGAGGAGCCCCGGTGTA 62.589 63.158 0.00 0.00 37.58 2.90
19 20 3.528370 CGAGGAGCCCCGGTGTAG 61.528 72.222 0.00 0.00 37.58 2.74
20 21 2.043248 GAGGAGCCCCGGTGTAGA 60.043 66.667 0.00 0.00 37.58 2.59
21 22 1.457831 GAGGAGCCCCGGTGTAGAT 60.458 63.158 0.00 0.00 37.58 1.98
22 23 1.749334 GAGGAGCCCCGGTGTAGATG 61.749 65.000 0.00 0.00 37.58 2.90
23 24 2.109181 GAGCCCCGGTGTAGATGC 59.891 66.667 0.00 0.00 0.00 3.91
24 25 2.365635 AGCCCCGGTGTAGATGCT 60.366 61.111 0.00 0.00 0.00 3.79
25 26 2.109181 GCCCCGGTGTAGATGCTC 59.891 66.667 0.00 0.00 0.00 4.26
26 27 2.731571 GCCCCGGTGTAGATGCTCA 61.732 63.158 0.00 0.00 0.00 4.26
27 28 1.904771 CCCCGGTGTAGATGCTCAA 59.095 57.895 0.00 0.00 0.00 3.02
28 29 0.462047 CCCCGGTGTAGATGCTCAAC 60.462 60.000 0.00 0.00 0.00 3.18
29 30 0.462047 CCCGGTGTAGATGCTCAACC 60.462 60.000 0.00 0.00 0.00 3.77
30 31 0.249120 CCGGTGTAGATGCTCAACCA 59.751 55.000 0.00 0.00 0.00 3.67
31 32 1.645034 CGGTGTAGATGCTCAACCAG 58.355 55.000 0.00 0.00 0.00 4.00
32 33 1.066858 CGGTGTAGATGCTCAACCAGT 60.067 52.381 0.00 0.00 0.00 4.00
33 34 2.612972 CGGTGTAGATGCTCAACCAGTT 60.613 50.000 0.00 0.00 0.00 3.16
34 35 2.744202 GGTGTAGATGCTCAACCAGTTG 59.256 50.000 4.09 4.09 41.71 3.16
35 36 3.403038 GTGTAGATGCTCAACCAGTTGT 58.597 45.455 10.17 0.00 41.16 3.32
36 37 3.433615 GTGTAGATGCTCAACCAGTTGTC 59.566 47.826 10.17 4.89 41.16 3.18
37 38 2.936919 AGATGCTCAACCAGTTGTCA 57.063 45.000 10.17 9.72 41.16 3.58
38 39 2.498167 AGATGCTCAACCAGTTGTCAC 58.502 47.619 10.17 2.66 41.16 3.67
39 40 1.537202 GATGCTCAACCAGTTGTCACC 59.463 52.381 10.17 0.00 41.16 4.02
40 41 0.546122 TGCTCAACCAGTTGTCACCT 59.454 50.000 10.17 0.00 41.16 4.00
41 42 1.765904 TGCTCAACCAGTTGTCACCTA 59.234 47.619 10.17 0.00 41.16 3.08
42 43 2.171659 TGCTCAACCAGTTGTCACCTAA 59.828 45.455 10.17 0.00 41.16 2.69
43 44 3.181445 TGCTCAACCAGTTGTCACCTAAT 60.181 43.478 10.17 0.00 41.16 1.73
44 45 4.041075 TGCTCAACCAGTTGTCACCTAATA 59.959 41.667 10.17 0.00 41.16 0.98
45 46 5.001232 GCTCAACCAGTTGTCACCTAATAA 58.999 41.667 10.17 0.00 41.16 1.40
46 47 5.648092 GCTCAACCAGTTGTCACCTAATAAT 59.352 40.000 10.17 0.00 41.16 1.28
47 48 6.151144 GCTCAACCAGTTGTCACCTAATAATT 59.849 38.462 10.17 0.00 41.16 1.40
48 49 7.335924 GCTCAACCAGTTGTCACCTAATAATTA 59.664 37.037 10.17 0.00 41.16 1.40
49 50 8.786826 TCAACCAGTTGTCACCTAATAATTAG 57.213 34.615 10.17 0.00 41.16 1.73
50 51 7.827236 TCAACCAGTTGTCACCTAATAATTAGG 59.173 37.037 10.17 0.00 46.95 2.69
70 71 7.820578 TTAGGTAGAGAATAGACTGTTAGGC 57.179 40.000 0.00 0.00 0.00 3.93
71 72 6.020881 AGGTAGAGAATAGACTGTTAGGCT 57.979 41.667 0.00 0.00 37.37 4.58
72 73 5.830991 AGGTAGAGAATAGACTGTTAGGCTG 59.169 44.000 0.00 0.00 32.21 4.85
73 74 5.010213 GGTAGAGAATAGACTGTTAGGCTGG 59.990 48.000 0.00 0.00 32.21 4.85
74 75 4.615513 AGAGAATAGACTGTTAGGCTGGT 58.384 43.478 0.00 0.00 32.21 4.00
75 76 4.647399 AGAGAATAGACTGTTAGGCTGGTC 59.353 45.833 0.00 0.45 32.21 4.02
76 77 4.353777 AGAATAGACTGTTAGGCTGGTCA 58.646 43.478 0.00 0.00 32.21 4.02
77 78 4.160626 AGAATAGACTGTTAGGCTGGTCAC 59.839 45.833 0.00 0.00 32.21 3.67
78 79 1.717032 AGACTGTTAGGCTGGTCACA 58.283 50.000 0.00 0.00 27.71 3.58
79 80 2.047061 AGACTGTTAGGCTGGTCACAA 58.953 47.619 0.00 0.00 27.71 3.33
80 81 2.639839 AGACTGTTAGGCTGGTCACAAT 59.360 45.455 0.00 0.00 27.71 2.71
81 82 2.744202 GACTGTTAGGCTGGTCACAATG 59.256 50.000 0.00 0.00 0.00 2.82
82 83 2.086869 CTGTTAGGCTGGTCACAATGG 58.913 52.381 0.00 0.00 0.00 3.16
83 84 1.271871 TGTTAGGCTGGTCACAATGGG 60.272 52.381 0.00 0.00 0.00 4.00
84 85 1.004277 GTTAGGCTGGTCACAATGGGA 59.996 52.381 0.00 0.00 0.00 4.37
85 86 1.367346 TAGGCTGGTCACAATGGGAA 58.633 50.000 0.00 0.00 0.00 3.97
86 87 0.038744 AGGCTGGTCACAATGGGAAG 59.961 55.000 0.00 0.00 0.00 3.46
87 88 0.967380 GGCTGGTCACAATGGGAAGG 60.967 60.000 0.00 0.00 0.00 3.46
88 89 0.038166 GCTGGTCACAATGGGAAGGA 59.962 55.000 0.00 0.00 0.00 3.36
89 90 1.547675 GCTGGTCACAATGGGAAGGAA 60.548 52.381 0.00 0.00 0.00 3.36
90 91 2.162681 CTGGTCACAATGGGAAGGAAC 58.837 52.381 0.00 0.00 0.00 3.62
108 109 6.038997 AGGAACTTAGGAGTAACATCACAC 57.961 41.667 0.00 0.00 34.21 3.82
109 110 5.542635 AGGAACTTAGGAGTAACATCACACA 59.457 40.000 0.00 0.00 34.21 3.72
110 111 5.638234 GGAACTTAGGAGTAACATCACACAC 59.362 44.000 0.00 0.00 34.21 3.82
111 112 6.420913 AACTTAGGAGTAACATCACACACT 57.579 37.500 0.00 0.00 34.21 3.55
112 113 6.026947 ACTTAGGAGTAACATCACACACTC 57.973 41.667 0.00 0.00 37.32 3.51
118 119 6.648725 GAGTAACATCACACACTCCAATAC 57.351 41.667 0.00 0.00 32.93 1.89
119 120 6.109156 AGTAACATCACACACTCCAATACA 57.891 37.500 0.00 0.00 0.00 2.29
120 121 6.530120 AGTAACATCACACACTCCAATACAA 58.470 36.000 0.00 0.00 0.00 2.41
121 122 5.689383 AACATCACACACTCCAATACAAC 57.311 39.130 0.00 0.00 0.00 3.32
122 123 4.973168 ACATCACACACTCCAATACAACT 58.027 39.130 0.00 0.00 0.00 3.16
123 124 5.376625 ACATCACACACTCCAATACAACTT 58.623 37.500 0.00 0.00 0.00 2.66
124 125 5.827797 ACATCACACACTCCAATACAACTTT 59.172 36.000 0.00 0.00 0.00 2.66
125 126 5.749596 TCACACACTCCAATACAACTTTG 57.250 39.130 0.00 0.00 0.00 2.77
126 127 4.036262 TCACACACTCCAATACAACTTTGC 59.964 41.667 0.00 0.00 0.00 3.68
127 128 4.036734 CACACACTCCAATACAACTTTGCT 59.963 41.667 0.00 0.00 0.00 3.91
128 129 4.644685 ACACACTCCAATACAACTTTGCTT 59.355 37.500 0.00 0.00 0.00 3.91
129 130 5.825679 ACACACTCCAATACAACTTTGCTTA 59.174 36.000 0.00 0.00 0.00 3.09
130 131 6.142817 CACACTCCAATACAACTTTGCTTAC 58.857 40.000 0.00 0.00 0.00 2.34
131 132 5.049680 ACACTCCAATACAACTTTGCTTACG 60.050 40.000 0.00 0.00 0.00 3.18
132 133 5.049680 CACTCCAATACAACTTTGCTTACGT 60.050 40.000 0.00 0.00 0.00 3.57
133 134 5.049680 ACTCCAATACAACTTTGCTTACGTG 60.050 40.000 0.00 0.00 0.00 4.49
134 135 4.214545 TCCAATACAACTTTGCTTACGTGG 59.785 41.667 0.00 0.00 0.00 4.94
135 136 3.824414 ATACAACTTTGCTTACGTGGC 57.176 42.857 0.00 3.00 0.00 5.01
136 137 1.384525 ACAACTTTGCTTACGTGGCA 58.615 45.000 12.76 12.76 37.97 4.92
137 138 1.064952 ACAACTTTGCTTACGTGGCAC 59.935 47.619 15.67 7.79 39.55 5.01
151 152 4.850859 CGTGGCACGTATTTAATGAAGA 57.149 40.909 30.56 0.00 36.74 2.87
152 153 4.822107 CGTGGCACGTATTTAATGAAGAG 58.178 43.478 30.56 0.00 36.74 2.85
153 154 4.565166 CGTGGCACGTATTTAATGAAGAGA 59.435 41.667 30.56 0.00 36.74 3.10
154 155 5.276395 CGTGGCACGTATTTAATGAAGAGAG 60.276 44.000 30.56 0.00 36.74 3.20
155 156 5.810587 GTGGCACGTATTTAATGAAGAGAGA 59.189 40.000 0.00 0.00 0.00 3.10
156 157 6.019479 GTGGCACGTATTTAATGAAGAGAGAG 60.019 42.308 0.00 0.00 0.00 3.20
157 158 5.463724 GGCACGTATTTAATGAAGAGAGAGG 59.536 44.000 0.00 0.00 0.00 3.69
158 159 6.043411 GCACGTATTTAATGAAGAGAGAGGT 58.957 40.000 0.00 0.00 0.00 3.85
159 160 6.019479 GCACGTATTTAATGAAGAGAGAGGTG 60.019 42.308 0.00 0.00 0.00 4.00
160 161 6.019479 CACGTATTTAATGAAGAGAGAGGTGC 60.019 42.308 0.00 0.00 0.00 5.01
161 162 6.127310 ACGTATTTAATGAAGAGAGAGGTGCT 60.127 38.462 0.00 0.00 0.00 4.40
162 163 6.758886 CGTATTTAATGAAGAGAGAGGTGCTT 59.241 38.462 0.00 0.00 0.00 3.91
163 164 6.998968 ATTTAATGAAGAGAGAGGTGCTTG 57.001 37.500 0.00 0.00 0.00 4.01
164 165 5.489792 TTAATGAAGAGAGAGGTGCTTGT 57.510 39.130 0.00 0.00 0.00 3.16
165 166 2.827800 TGAAGAGAGAGGTGCTTGTG 57.172 50.000 0.00 0.00 0.00 3.33
166 167 1.345741 TGAAGAGAGAGGTGCTTGTGG 59.654 52.381 0.00 0.00 0.00 4.17
167 168 1.346068 GAAGAGAGAGGTGCTTGTGGT 59.654 52.381 0.00 0.00 0.00 4.16
168 169 2.310779 AGAGAGAGGTGCTTGTGGTA 57.689 50.000 0.00 0.00 0.00 3.25
169 170 2.609747 AGAGAGAGGTGCTTGTGGTAA 58.390 47.619 0.00 0.00 0.00 2.85
170 171 2.300437 AGAGAGAGGTGCTTGTGGTAAC 59.700 50.000 0.00 0.00 0.00 2.50
171 172 2.300437 GAGAGAGGTGCTTGTGGTAACT 59.700 50.000 0.00 0.00 37.61 2.24
172 173 3.507411 AGAGAGGTGCTTGTGGTAACTA 58.493 45.455 0.00 0.00 37.61 2.24
173 174 3.511934 AGAGAGGTGCTTGTGGTAACTAG 59.488 47.826 0.00 0.00 37.61 2.57
190 191 5.672421 AACTAGCTAAGTTACCGGAACAT 57.328 39.130 9.46 4.03 46.85 2.71
191 192 5.259832 ACTAGCTAAGTTACCGGAACATC 57.740 43.478 9.46 0.00 40.86 3.06
192 193 4.708421 ACTAGCTAAGTTACCGGAACATCA 59.292 41.667 9.46 0.00 40.86 3.07
193 194 3.858247 AGCTAAGTTACCGGAACATCAC 58.142 45.455 9.46 0.66 40.86 3.06
194 195 3.259876 AGCTAAGTTACCGGAACATCACA 59.740 43.478 9.46 0.00 40.86 3.58
195 196 3.370061 GCTAAGTTACCGGAACATCACAC 59.630 47.826 9.46 0.00 40.86 3.82
196 197 3.478857 AAGTTACCGGAACATCACACA 57.521 42.857 9.46 0.00 40.86 3.72
197 198 2.762745 AGTTACCGGAACATCACACAC 58.237 47.619 9.46 0.00 40.86 3.82
198 199 2.367567 AGTTACCGGAACATCACACACT 59.632 45.455 9.46 0.00 40.86 3.55
199 200 2.735134 GTTACCGGAACATCACACACTC 59.265 50.000 9.46 0.00 38.02 3.51
200 201 0.034896 ACCGGAACATCACACACTCC 59.965 55.000 9.46 0.00 0.00 3.85
201 202 0.034756 CCGGAACATCACACACTCCA 59.965 55.000 0.00 0.00 0.00 3.86
202 203 1.542328 CCGGAACATCACACACTCCAA 60.542 52.381 0.00 0.00 0.00 3.53
203 204 1.800586 CGGAACATCACACACTCCAAG 59.199 52.381 0.00 0.00 0.00 3.61
204 205 2.547855 CGGAACATCACACACTCCAAGA 60.548 50.000 0.00 0.00 0.00 3.02
205 206 3.476552 GGAACATCACACACTCCAAGAA 58.523 45.455 0.00 0.00 0.00 2.52
206 207 3.882888 GGAACATCACACACTCCAAGAAA 59.117 43.478 0.00 0.00 0.00 2.52
207 208 4.261197 GGAACATCACACACTCCAAGAAAC 60.261 45.833 0.00 0.00 0.00 2.78
208 209 3.884895 ACATCACACACTCCAAGAAACA 58.115 40.909 0.00 0.00 0.00 2.83
209 210 4.269183 ACATCACACACTCCAAGAAACAA 58.731 39.130 0.00 0.00 0.00 2.83
210 211 4.889409 ACATCACACACTCCAAGAAACAAT 59.111 37.500 0.00 0.00 0.00 2.71
211 212 4.898829 TCACACACTCCAAGAAACAATG 57.101 40.909 0.00 0.00 0.00 2.82
212 213 4.522114 TCACACACTCCAAGAAACAATGA 58.478 39.130 0.00 0.00 0.00 2.57
213 214 4.576053 TCACACACTCCAAGAAACAATGAG 59.424 41.667 0.00 0.00 0.00 2.90
214 215 4.336433 CACACACTCCAAGAAACAATGAGT 59.664 41.667 0.00 0.00 36.77 3.41
215 216 4.576463 ACACACTCCAAGAAACAATGAGTC 59.424 41.667 0.00 0.00 34.21 3.36
216 217 4.818546 CACACTCCAAGAAACAATGAGTCT 59.181 41.667 0.00 0.00 34.21 3.24
217 218 5.991606 CACACTCCAAGAAACAATGAGTCTA 59.008 40.000 0.00 0.00 34.21 2.59
218 219 6.652481 CACACTCCAAGAAACAATGAGTCTAT 59.348 38.462 0.00 0.00 34.21 1.98
219 220 7.819415 CACACTCCAAGAAACAATGAGTCTATA 59.181 37.037 0.00 0.00 34.21 1.31
220 221 8.375506 ACACTCCAAGAAACAATGAGTCTATAA 58.624 33.333 0.00 0.00 34.21 0.98
221 222 8.660373 CACTCCAAGAAACAATGAGTCTATAAC 58.340 37.037 0.00 0.00 34.21 1.89
222 223 7.824779 ACTCCAAGAAACAATGAGTCTATAACC 59.175 37.037 0.00 0.00 30.81 2.85
223 224 7.918076 TCCAAGAAACAATGAGTCTATAACCT 58.082 34.615 0.00 0.00 0.00 3.50
224 225 9.042450 TCCAAGAAACAATGAGTCTATAACCTA 57.958 33.333 0.00 0.00 0.00 3.08
225 226 9.667107 CCAAGAAACAATGAGTCTATAACCTAA 57.333 33.333 0.00 0.00 0.00 2.69
244 245 8.445275 AACCTAATAAATACATCGTTGCATGA 57.555 30.769 0.00 0.00 0.00 3.07
245 246 7.861630 ACCTAATAAATACATCGTTGCATGAC 58.138 34.615 0.00 0.00 0.00 3.06
246 247 7.497579 ACCTAATAAATACATCGTTGCATGACA 59.502 33.333 0.00 0.00 0.00 3.58
247 248 7.798516 CCTAATAAATACATCGTTGCATGACAC 59.201 37.037 0.00 0.00 0.00 3.67
248 249 6.925610 ATAAATACATCGTTGCATGACACT 57.074 33.333 0.00 0.00 0.00 3.55
249 250 8.432110 AATAAATACATCGTTGCATGACACTA 57.568 30.769 0.00 0.00 0.00 2.74
250 251 6.925610 AAATACATCGTTGCATGACACTAT 57.074 33.333 0.00 0.00 0.00 2.12
251 252 9.705290 ATAAATACATCGTTGCATGACACTATA 57.295 29.630 0.00 0.00 0.00 1.31
252 253 8.607441 AAATACATCGTTGCATGACACTATAT 57.393 30.769 0.00 0.00 0.00 0.86
253 254 9.705290 AAATACATCGTTGCATGACACTATATA 57.295 29.630 0.00 0.00 0.00 0.86
254 255 8.917415 ATACATCGTTGCATGACACTATATAG 57.083 34.615 8.27 8.27 0.00 1.31
255 256 6.981722 ACATCGTTGCATGACACTATATAGA 58.018 36.000 16.79 0.00 0.00 1.98
256 257 7.606349 ACATCGTTGCATGACACTATATAGAT 58.394 34.615 16.79 3.99 0.00 1.98
257 258 7.543520 ACATCGTTGCATGACACTATATAGATG 59.456 37.037 16.79 12.42 36.35 2.90
258 259 6.981722 TCGTTGCATGACACTATATAGATGT 58.018 36.000 16.79 15.20 0.00 3.06
259 260 7.433680 TCGTTGCATGACACTATATAGATGTT 58.566 34.615 16.79 1.40 0.00 2.71
260 261 7.595130 TCGTTGCATGACACTATATAGATGTTC 59.405 37.037 16.79 7.11 0.00 3.18
261 262 7.148738 CGTTGCATGACACTATATAGATGTTCC 60.149 40.741 16.79 6.89 0.00 3.62
262 263 7.544804 TGCATGACACTATATAGATGTTCCT 57.455 36.000 16.79 4.06 0.00 3.36
263 264 8.650143 TGCATGACACTATATAGATGTTCCTA 57.350 34.615 16.79 6.14 0.00 2.94
264 265 8.523658 TGCATGACACTATATAGATGTTCCTAC 58.476 37.037 16.79 5.74 0.00 3.18
265 266 7.976734 GCATGACACTATATAGATGTTCCTACC 59.023 40.741 16.79 5.18 0.00 3.18
266 267 8.470805 CATGACACTATATAGATGTTCCTACCC 58.529 40.741 16.79 4.62 0.00 3.69
267 268 7.532199 TGACACTATATAGATGTTCCTACCCA 58.468 38.462 16.79 6.68 0.00 4.51
268 269 7.450634 TGACACTATATAGATGTTCCTACCCAC 59.549 40.741 16.79 3.49 0.00 4.61
269 270 7.536625 ACACTATATAGATGTTCCTACCCACT 58.463 38.462 16.79 0.00 0.00 4.00
270 271 8.676020 ACACTATATAGATGTTCCTACCCACTA 58.324 37.037 16.79 0.00 0.00 2.74
271 272 8.958506 CACTATATAGATGTTCCTACCCACTAC 58.041 40.741 16.79 0.00 0.00 2.73
272 273 7.828223 ACTATATAGATGTTCCTACCCACTACG 59.172 40.741 16.79 0.00 0.00 3.51
273 274 3.377253 AGATGTTCCTACCCACTACGA 57.623 47.619 0.00 0.00 0.00 3.43
274 275 3.705051 AGATGTTCCTACCCACTACGAA 58.295 45.455 0.00 0.00 0.00 3.85
275 276 3.700038 AGATGTTCCTACCCACTACGAAG 59.300 47.826 0.00 0.00 0.00 3.79
276 277 2.173519 TGTTCCTACCCACTACGAAGG 58.826 52.381 0.00 0.00 0.00 3.46
277 278 2.174360 GTTCCTACCCACTACGAAGGT 58.826 52.381 0.00 0.00 37.69 3.50
278 279 3.245229 TGTTCCTACCCACTACGAAGGTA 60.245 47.826 0.00 0.00 35.02 3.08
326 327 9.991906 TGTAAGTTACTAGTTTATGTTCTTGCT 57.008 29.630 14.00 0.00 0.00 3.91
329 330 9.726438 AAGTTACTAGTTTATGTTCTTGCTCAT 57.274 29.630 0.00 0.00 0.00 2.90
330 331 9.726438 AGTTACTAGTTTATGTTCTTGCTCATT 57.274 29.630 0.00 0.00 0.00 2.57
331 332 9.760660 GTTACTAGTTTATGTTCTTGCTCATTG 57.239 33.333 0.00 0.00 0.00 2.82
332 333 7.986085 ACTAGTTTATGTTCTTGCTCATTGT 57.014 32.000 0.00 0.00 0.00 2.71
333 334 7.810658 ACTAGTTTATGTTCTTGCTCATTGTG 58.189 34.615 0.00 0.00 0.00 3.33
334 335 6.882610 AGTTTATGTTCTTGCTCATTGTGA 57.117 33.333 0.00 0.00 0.00 3.58
335 336 6.672147 AGTTTATGTTCTTGCTCATTGTGAC 58.328 36.000 0.00 0.00 0.00 3.67
336 337 5.627499 TTATGTTCTTGCTCATTGTGACC 57.373 39.130 0.00 0.00 0.00 4.02
337 338 2.929641 TGTTCTTGCTCATTGTGACCA 58.070 42.857 0.00 0.00 0.00 4.02
338 339 2.880268 TGTTCTTGCTCATTGTGACCAG 59.120 45.455 0.00 0.00 0.00 4.00
339 340 1.527034 TCTTGCTCATTGTGACCAGC 58.473 50.000 0.00 0.00 0.00 4.85
354 355 1.296715 CAGCCTTACTGCCTTCCGT 59.703 57.895 0.00 0.00 40.19 4.69
370 372 1.299850 CGTGTGAACGACAGGCAGA 60.300 57.895 0.00 0.00 34.28 4.26
371 373 0.667487 CGTGTGAACGACAGGCAGAT 60.667 55.000 0.00 0.00 34.28 2.90
373 375 2.735444 CGTGTGAACGACAGGCAGATAT 60.735 50.000 0.00 0.00 34.28 1.63
384 386 2.238353 GCAGATATCGTGCCGCAAT 58.762 52.632 13.20 0.00 34.67 3.56
410 412 2.766263 TCTGTGCTGAATCCTTATCCGT 59.234 45.455 0.00 0.00 0.00 4.69
427 429 0.601046 CGTTGAGGAGCAAGCAGACA 60.601 55.000 0.00 0.00 37.12 3.41
440 442 2.058675 CAGACAAGAACCCCGTCCT 58.941 57.895 0.00 0.00 0.00 3.85
442 444 0.396811 AGACAAGAACCCCGTCCTTG 59.603 55.000 0.00 0.00 42.04 3.61
443 445 0.395312 GACAAGAACCCCGTCCTTGA 59.605 55.000 0.00 0.00 39.55 3.02
444 446 0.841289 ACAAGAACCCCGTCCTTGAA 59.159 50.000 0.00 0.00 39.55 2.69
448 451 1.772453 AGAACCCCGTCCTTGAAGAAA 59.228 47.619 0.00 0.00 0.00 2.52
473 476 0.687427 AACAAAGCCACTTGCCCTGT 60.687 50.000 0.00 0.00 42.71 4.00
492 495 4.217983 CCTGTCCTACGACCATAATACTCC 59.782 50.000 0.00 0.00 38.32 3.85
536 540 0.749091 TTGGATCTGCAGCCCATTCG 60.749 55.000 22.63 0.00 0.00 3.34
556 560 2.548057 CGGTGTCAACTACAGTGCAAAT 59.452 45.455 0.00 0.00 39.29 2.32
565 610 9.410556 GTCAACTACAGTGCAAATCATTAAATT 57.589 29.630 0.00 0.00 0.00 1.82
601 646 1.153147 GATGACTTTCCCGGCCTCC 60.153 63.158 0.00 0.00 0.00 4.30
605 650 3.646715 CTTTCCCGGCCTCCACCA 61.647 66.667 0.00 0.00 0.00 4.17
663 708 3.623060 GCGCTTCTGTGATTTCCATCTTA 59.377 43.478 0.00 0.00 0.00 2.10
664 709 4.094887 GCGCTTCTGTGATTTCCATCTTAA 59.905 41.667 0.00 0.00 0.00 1.85
665 710 5.220931 GCGCTTCTGTGATTTCCATCTTAAT 60.221 40.000 0.00 0.00 0.00 1.40
666 711 6.017934 GCGCTTCTGTGATTTCCATCTTAATA 60.018 38.462 0.00 0.00 0.00 0.98
668 713 7.348201 GCTTCTGTGATTTCCATCTTAATACG 58.652 38.462 0.00 0.00 0.00 3.06
669 714 7.224753 GCTTCTGTGATTTCCATCTTAATACGA 59.775 37.037 0.00 0.00 0.00 3.43
671 716 8.648557 TCTGTGATTTCCATCTTAATACGAAG 57.351 34.615 0.00 0.00 0.00 3.79
689 736 2.756840 AGCTACCCGAAAACTGTACC 57.243 50.000 0.00 0.00 0.00 3.34
692 739 2.676176 GCTACCCGAAAACTGTACCCTC 60.676 54.545 0.00 0.00 0.00 4.30
703 750 3.454858 ACTGTACCCTCCATTGAGATGT 58.545 45.455 0.00 0.00 41.42 3.06
709 756 4.302067 ACCCTCCATTGAGATGTCATACT 58.698 43.478 0.00 0.00 41.42 2.12
711 758 5.905331 ACCCTCCATTGAGATGTCATACTAA 59.095 40.000 0.00 0.00 41.42 2.24
761 808 3.740384 CGTCAAACGTACCCTTTGC 57.260 52.632 0.00 2.39 36.74 3.68
837 890 4.242336 GGAATCAATCCCCTTCTCAACT 57.758 45.455 0.00 0.00 43.00 3.16
865 918 4.892965 AGTGGGCAGCCAAACGCA 62.893 61.111 15.19 0.00 41.38 5.24
877 930 2.327568 CCAAACGCACATAAAAGCAGG 58.672 47.619 0.00 0.00 0.00 4.85
892 946 3.443479 AGGCCCCGATCTCCTCCT 61.443 66.667 0.00 0.00 0.00 3.69
893 947 2.920384 GGCCCCGATCTCCTCCTC 60.920 72.222 0.00 0.00 0.00 3.71
896 953 1.075226 CCCCGATCTCCTCCTCCAA 60.075 63.158 0.00 0.00 0.00 3.53
956 1013 2.867975 CAGCAAGGAAAGCAAAACCAAG 59.132 45.455 0.00 0.00 0.00 3.61
963 1020 3.972276 GCAAAACCAAGCCGGCGA 61.972 61.111 23.20 0.00 39.03 5.54
964 1021 2.255252 CAAAACCAAGCCGGCGAG 59.745 61.111 23.20 17.66 39.03 5.03
965 1022 2.112297 AAAACCAAGCCGGCGAGA 59.888 55.556 23.20 0.00 39.03 4.04
966 1023 1.966451 AAAACCAAGCCGGCGAGAG 60.966 57.895 23.20 14.01 39.03 3.20
967 1024 2.391724 AAAACCAAGCCGGCGAGAGA 62.392 55.000 23.20 0.00 39.03 3.10
968 1025 2.788191 AAACCAAGCCGGCGAGAGAG 62.788 60.000 23.20 10.54 39.03 3.20
969 1026 3.452786 CCAAGCCGGCGAGAGAGA 61.453 66.667 23.20 0.00 0.00 3.10
970 1027 2.573869 CAAGCCGGCGAGAGAGAA 59.426 61.111 23.20 0.00 0.00 2.87
971 1028 1.079819 CAAGCCGGCGAGAGAGAAA 60.080 57.895 23.20 0.00 0.00 2.52
972 1029 0.670546 CAAGCCGGCGAGAGAGAAAA 60.671 55.000 23.20 0.00 0.00 2.29
973 1030 0.670854 AAGCCGGCGAGAGAGAAAAC 60.671 55.000 23.20 0.00 0.00 2.43
974 1031 2.101233 GCCGGCGAGAGAGAAAACC 61.101 63.158 12.58 0.00 0.00 3.27
975 1032 1.292223 CCGGCGAGAGAGAAAACCA 59.708 57.895 9.30 0.00 0.00 3.67
1566 1625 2.492773 GCTGTGCCAACTTGTGCCT 61.493 57.895 1.29 0.00 0.00 4.75
1598 1657 6.019479 GGCTTTCTTCTTGTGTATCACTATCG 60.019 42.308 1.72 0.00 35.11 2.92
1682 1766 7.223584 TGATTTGAGATCTGAGTTGGTTGTTA 58.776 34.615 0.00 0.00 0.00 2.41
1684 1768 5.808366 TGAGATCTGAGTTGGTTGTTACT 57.192 39.130 0.00 0.00 0.00 2.24
1685 1769 5.541845 TGAGATCTGAGTTGGTTGTTACTG 58.458 41.667 0.00 0.00 0.00 2.74
1686 1770 5.070446 TGAGATCTGAGTTGGTTGTTACTGT 59.930 40.000 0.00 0.00 0.00 3.55
1687 1771 5.542779 AGATCTGAGTTGGTTGTTACTGTC 58.457 41.667 0.00 0.00 0.00 3.51
1688 1772 5.305644 AGATCTGAGTTGGTTGTTACTGTCT 59.694 40.000 0.00 0.00 0.00 3.41
1689 1773 4.693283 TCTGAGTTGGTTGTTACTGTCTG 58.307 43.478 0.00 0.00 0.00 3.51
1690 1774 3.202906 TGAGTTGGTTGTTACTGTCTGC 58.797 45.455 0.00 0.00 0.00 4.26
1691 1775 3.118408 TGAGTTGGTTGTTACTGTCTGCT 60.118 43.478 0.00 0.00 0.00 4.24
1692 1776 4.100344 TGAGTTGGTTGTTACTGTCTGCTA 59.900 41.667 0.00 0.00 0.00 3.49
1693 1777 4.377897 AGTTGGTTGTTACTGTCTGCTAC 58.622 43.478 0.00 0.00 0.00 3.58
1694 1778 4.101119 AGTTGGTTGTTACTGTCTGCTACT 59.899 41.667 0.00 0.00 0.00 2.57
1695 1779 5.303589 AGTTGGTTGTTACTGTCTGCTACTA 59.696 40.000 0.00 0.00 0.00 1.82
1696 1780 5.386958 TGGTTGTTACTGTCTGCTACTAG 57.613 43.478 0.00 0.00 0.00 2.57
1697 1781 4.831155 TGGTTGTTACTGTCTGCTACTAGT 59.169 41.667 0.00 0.00 0.00 2.57
1698 1782 6.005823 TGGTTGTTACTGTCTGCTACTAGTA 58.994 40.000 1.89 1.89 0.00 1.82
1699 1783 6.662234 TGGTTGTTACTGTCTGCTACTAGTAT 59.338 38.462 2.33 0.00 0.00 2.12
1700 1784 7.177921 TGGTTGTTACTGTCTGCTACTAGTATT 59.822 37.037 2.33 0.00 0.00 1.89
1701 1785 7.701501 GGTTGTTACTGTCTGCTACTAGTATTC 59.298 40.741 2.33 0.00 0.00 1.75
1702 1786 8.460428 GTTGTTACTGTCTGCTACTAGTATTCT 58.540 37.037 2.33 0.00 0.00 2.40
1703 1787 8.577048 TGTTACTGTCTGCTACTAGTATTCTT 57.423 34.615 2.33 0.00 0.00 2.52
1704 1788 8.459635 TGTTACTGTCTGCTACTAGTATTCTTG 58.540 37.037 2.33 0.00 0.00 3.02
1705 1789 8.460428 GTTACTGTCTGCTACTAGTATTCTTGT 58.540 37.037 2.33 0.69 34.44 3.16
1706 1790 7.469537 ACTGTCTGCTACTAGTATTCTTGTT 57.530 36.000 2.33 0.00 32.55 2.83
1707 1791 7.897864 ACTGTCTGCTACTAGTATTCTTGTTT 58.102 34.615 2.33 0.00 32.55 2.83
1708 1792 8.030106 ACTGTCTGCTACTAGTATTCTTGTTTC 58.970 37.037 2.33 0.00 32.55 2.78
1709 1793 7.892609 TGTCTGCTACTAGTATTCTTGTTTCA 58.107 34.615 2.33 0.00 32.55 2.69
1710 1794 8.029522 TGTCTGCTACTAGTATTCTTGTTTCAG 58.970 37.037 2.33 1.66 33.70 3.02
1792 1893 9.553064 GACCTGTAATGTCATCATCTTTCTATT 57.447 33.333 0.00 0.00 31.29 1.73
1842 1943 5.163784 CGAGTTTGATCTAACGAGTGGAGTA 60.164 44.000 13.23 0.00 33.26 2.59
1894 1995 8.557864 TCGAGATCGAACTTAGAGGTAAATTAG 58.442 37.037 1.76 0.00 46.30 1.73
1941 2042 4.029809 GGTGGCCGGTGGTTAGCT 62.030 66.667 1.90 0.00 0.00 3.32
1942 2043 2.746277 GTGGCCGGTGGTTAGCTG 60.746 66.667 1.90 0.00 0.00 4.24
1943 2044 4.715523 TGGCCGGTGGTTAGCTGC 62.716 66.667 1.90 0.00 34.34 5.25
1944 2045 4.410400 GGCCGGTGGTTAGCTGCT 62.410 66.667 7.57 7.57 35.28 4.24
1945 2046 2.359975 GCCGGTGGTTAGCTGCTT 60.360 61.111 7.79 0.00 32.67 3.91
1946 2047 2.690778 GCCGGTGGTTAGCTGCTTG 61.691 63.158 7.79 0.00 32.67 4.01
1952 2053 2.355716 GGTGGTTAGCTGCTTGTGGATA 60.356 50.000 7.79 0.00 0.00 2.59
1959 2060 2.770802 AGCTGCTTGTGGATATCAGAGT 59.229 45.455 4.83 0.00 0.00 3.24
1996 2100 1.067250 CCGGGGCGCATAAAATTGG 59.933 57.895 10.83 0.00 0.00 3.16
2003 2107 2.483583 CGCATAAAATTGGCGCCTAA 57.516 45.000 29.70 20.11 44.49 2.69
2261 2400 1.153369 CCTCGCCACCATCGTCATT 60.153 57.895 0.00 0.00 0.00 2.57
2273 2412 2.040544 CGTCATTGGCGGCCTTCTT 61.041 57.895 21.46 0.00 0.00 2.52
2308 2454 2.361610 CCAACCCTGCTCGGCATT 60.362 61.111 0.00 0.00 38.13 3.56
2380 2526 2.504244 GACGACGACGCCTCCTTG 60.504 66.667 7.30 0.00 43.96 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.588817 TACACCGGGGCTCCTCGAA 62.589 63.158 1.73 0.00 0.00 3.71
1 2 4.051167 TACACCGGGGCTCCTCGA 62.051 66.667 1.73 0.00 0.00 4.04
2 3 3.528370 CTACACCGGGGCTCCTCG 61.528 72.222 1.73 0.23 0.00 4.63
4 5 1.762460 CATCTACACCGGGGCTCCT 60.762 63.158 1.73 0.00 0.00 3.69
5 6 2.822399 CATCTACACCGGGGCTCC 59.178 66.667 1.73 0.00 0.00 4.70
6 7 2.109181 GCATCTACACCGGGGCTC 59.891 66.667 1.73 0.00 0.00 4.70
8 9 2.109181 GAGCATCTACACCGGGGC 59.891 66.667 1.73 0.00 0.00 5.80
9 10 0.462047 GTTGAGCATCTACACCGGGG 60.462 60.000 0.00 0.00 40.61 5.73
10 11 0.462047 GGTTGAGCATCTACACCGGG 60.462 60.000 6.32 0.00 42.73 5.73
11 12 0.249120 TGGTTGAGCATCTACACCGG 59.751 55.000 0.00 0.00 42.73 5.28
12 13 1.066858 ACTGGTTGAGCATCTACACCG 60.067 52.381 0.00 0.00 42.73 4.94
13 14 2.744202 CAACTGGTTGAGCATCTACACC 59.256 50.000 7.61 0.00 42.73 4.16
14 15 3.403038 ACAACTGGTTGAGCATCTACAC 58.597 45.455 18.63 0.00 42.73 2.90
15 16 3.070878 TGACAACTGGTTGAGCATCTACA 59.929 43.478 18.63 4.68 42.73 2.74
16 17 3.433615 GTGACAACTGGTTGAGCATCTAC 59.566 47.826 18.63 5.17 42.93 2.59
17 18 3.557054 GGTGACAACTGGTTGAGCATCTA 60.557 47.826 18.63 0.00 42.93 1.98
18 19 2.498167 GTGACAACTGGTTGAGCATCT 58.502 47.619 18.63 0.00 42.93 2.90
19 20 1.537202 GGTGACAACTGGTTGAGCATC 59.463 52.381 18.63 12.48 42.93 3.91
20 21 1.143684 AGGTGACAACTGGTTGAGCAT 59.856 47.619 18.63 4.77 42.93 3.79
21 22 0.546122 AGGTGACAACTGGTTGAGCA 59.454 50.000 18.63 12.99 42.93 4.26
22 23 2.543777 TAGGTGACAACTGGTTGAGC 57.456 50.000 18.63 10.94 42.93 4.26
23 24 7.687941 AATTATTAGGTGACAACTGGTTGAG 57.312 36.000 18.63 0.00 42.93 3.02
24 25 7.827236 CCTAATTATTAGGTGACAACTGGTTGA 59.173 37.037 19.92 0.00 46.26 3.18
25 26 7.985476 CCTAATTATTAGGTGACAACTGGTTG 58.015 38.462 19.92 11.35 46.26 3.77
44 45 8.862085 GCCTAACAGTCTATTCTCTACCTAATT 58.138 37.037 0.00 0.00 0.00 1.40
45 46 8.228905 AGCCTAACAGTCTATTCTCTACCTAAT 58.771 37.037 0.00 0.00 0.00 1.73
46 47 7.502895 CAGCCTAACAGTCTATTCTCTACCTAA 59.497 40.741 0.00 0.00 0.00 2.69
47 48 6.999272 CAGCCTAACAGTCTATTCTCTACCTA 59.001 42.308 0.00 0.00 0.00 3.08
48 49 5.830991 CAGCCTAACAGTCTATTCTCTACCT 59.169 44.000 0.00 0.00 0.00 3.08
49 50 5.010213 CCAGCCTAACAGTCTATTCTCTACC 59.990 48.000 0.00 0.00 0.00 3.18
50 51 5.595133 ACCAGCCTAACAGTCTATTCTCTAC 59.405 44.000 0.00 0.00 0.00 2.59
51 52 5.767670 ACCAGCCTAACAGTCTATTCTCTA 58.232 41.667 0.00 0.00 0.00 2.43
52 53 4.615513 ACCAGCCTAACAGTCTATTCTCT 58.384 43.478 0.00 0.00 0.00 3.10
53 54 4.402793 TGACCAGCCTAACAGTCTATTCTC 59.597 45.833 0.00 0.00 0.00 2.87
54 55 4.160626 GTGACCAGCCTAACAGTCTATTCT 59.839 45.833 0.00 0.00 0.00 2.40
55 56 4.081642 TGTGACCAGCCTAACAGTCTATTC 60.082 45.833 0.00 0.00 0.00 1.75
56 57 3.838317 TGTGACCAGCCTAACAGTCTATT 59.162 43.478 0.00 0.00 0.00 1.73
57 58 3.441101 TGTGACCAGCCTAACAGTCTAT 58.559 45.455 0.00 0.00 0.00 1.98
58 59 2.884320 TGTGACCAGCCTAACAGTCTA 58.116 47.619 0.00 0.00 0.00 2.59
59 60 1.717032 TGTGACCAGCCTAACAGTCT 58.283 50.000 0.00 0.00 0.00 3.24
60 61 2.543777 TTGTGACCAGCCTAACAGTC 57.456 50.000 0.00 0.00 0.00 3.51
61 62 2.553028 CCATTGTGACCAGCCTAACAGT 60.553 50.000 0.00 0.00 0.00 3.55
62 63 2.086869 CCATTGTGACCAGCCTAACAG 58.913 52.381 0.00 0.00 0.00 3.16
63 64 1.271871 CCCATTGTGACCAGCCTAACA 60.272 52.381 0.00 0.00 0.00 2.41
64 65 1.004277 TCCCATTGTGACCAGCCTAAC 59.996 52.381 0.00 0.00 0.00 2.34
65 66 1.367346 TCCCATTGTGACCAGCCTAA 58.633 50.000 0.00 0.00 0.00 2.69
66 67 1.281867 CTTCCCATTGTGACCAGCCTA 59.718 52.381 0.00 0.00 0.00 3.93
67 68 0.038744 CTTCCCATTGTGACCAGCCT 59.961 55.000 0.00 0.00 0.00 4.58
68 69 0.967380 CCTTCCCATTGTGACCAGCC 60.967 60.000 0.00 0.00 0.00 4.85
69 70 0.038166 TCCTTCCCATTGTGACCAGC 59.962 55.000 0.00 0.00 0.00 4.85
70 71 2.162681 GTTCCTTCCCATTGTGACCAG 58.837 52.381 0.00 0.00 0.00 4.00
71 72 1.780309 AGTTCCTTCCCATTGTGACCA 59.220 47.619 0.00 0.00 0.00 4.02
72 73 2.586648 AGTTCCTTCCCATTGTGACC 57.413 50.000 0.00 0.00 0.00 4.02
73 74 4.010349 CCTAAGTTCCTTCCCATTGTGAC 58.990 47.826 0.00 0.00 0.00 3.67
74 75 3.913799 TCCTAAGTTCCTTCCCATTGTGA 59.086 43.478 0.00 0.00 0.00 3.58
75 76 4.263506 ACTCCTAAGTTCCTTCCCATTGTG 60.264 45.833 0.00 0.00 28.74 3.33
76 77 3.916989 ACTCCTAAGTTCCTTCCCATTGT 59.083 43.478 0.00 0.00 28.74 2.71
77 78 4.576330 ACTCCTAAGTTCCTTCCCATTG 57.424 45.455 0.00 0.00 28.74 2.82
78 79 5.550403 TGTTACTCCTAAGTTCCTTCCCATT 59.450 40.000 0.00 0.00 36.92 3.16
79 80 5.098663 TGTTACTCCTAAGTTCCTTCCCAT 58.901 41.667 0.00 0.00 36.92 4.00
80 81 4.495565 TGTTACTCCTAAGTTCCTTCCCA 58.504 43.478 0.00 0.00 36.92 4.37
81 82 5.189145 TGATGTTACTCCTAAGTTCCTTCCC 59.811 44.000 0.00 0.00 36.92 3.97
82 83 6.107343 GTGATGTTACTCCTAAGTTCCTTCC 58.893 44.000 0.00 0.00 36.92 3.46
83 84 6.590677 GTGTGATGTTACTCCTAAGTTCCTTC 59.409 42.308 0.00 0.00 36.92 3.46
84 85 6.042781 TGTGTGATGTTACTCCTAAGTTCCTT 59.957 38.462 0.00 0.00 36.92 3.36
85 86 5.542635 TGTGTGATGTTACTCCTAAGTTCCT 59.457 40.000 0.00 0.00 36.92 3.36
86 87 5.638234 GTGTGTGATGTTACTCCTAAGTTCC 59.362 44.000 0.00 0.00 36.92 3.62
87 88 6.456501 AGTGTGTGATGTTACTCCTAAGTTC 58.543 40.000 0.00 0.00 36.92 3.01
88 89 6.420913 AGTGTGTGATGTTACTCCTAAGTT 57.579 37.500 0.00 0.00 36.92 2.66
89 90 6.026947 GAGTGTGTGATGTTACTCCTAAGT 57.973 41.667 0.00 0.00 39.66 2.24
95 96 6.163476 TGTATTGGAGTGTGTGATGTTACTC 58.837 40.000 0.00 0.00 38.98 2.59
96 97 6.109156 TGTATTGGAGTGTGTGATGTTACT 57.891 37.500 0.00 0.00 0.00 2.24
97 98 6.426937 AGTTGTATTGGAGTGTGTGATGTTAC 59.573 38.462 0.00 0.00 0.00 2.50
98 99 6.530120 AGTTGTATTGGAGTGTGTGATGTTA 58.470 36.000 0.00 0.00 0.00 2.41
99 100 5.376625 AGTTGTATTGGAGTGTGTGATGTT 58.623 37.500 0.00 0.00 0.00 2.71
100 101 4.973168 AGTTGTATTGGAGTGTGTGATGT 58.027 39.130 0.00 0.00 0.00 3.06
101 102 5.947228 AAGTTGTATTGGAGTGTGTGATG 57.053 39.130 0.00 0.00 0.00 3.07
102 103 5.278463 GCAAAGTTGTATTGGAGTGTGTGAT 60.278 40.000 0.00 0.00 0.00 3.06
103 104 4.036262 GCAAAGTTGTATTGGAGTGTGTGA 59.964 41.667 0.00 0.00 0.00 3.58
104 105 4.036734 AGCAAAGTTGTATTGGAGTGTGTG 59.963 41.667 0.00 0.00 0.00 3.82
105 106 4.207165 AGCAAAGTTGTATTGGAGTGTGT 58.793 39.130 0.00 0.00 0.00 3.72
106 107 4.836125 AGCAAAGTTGTATTGGAGTGTG 57.164 40.909 0.00 0.00 0.00 3.82
107 108 5.049680 CGTAAGCAAAGTTGTATTGGAGTGT 60.050 40.000 0.00 0.00 0.00 3.55
108 109 5.049680 ACGTAAGCAAAGTTGTATTGGAGTG 60.050 40.000 0.00 0.00 45.62 3.51
109 110 5.049680 CACGTAAGCAAAGTTGTATTGGAGT 60.050 40.000 0.00 0.00 45.62 3.85
110 111 5.382303 CACGTAAGCAAAGTTGTATTGGAG 58.618 41.667 0.00 0.00 45.62 3.86
111 112 4.214545 CCACGTAAGCAAAGTTGTATTGGA 59.785 41.667 0.00 0.00 45.62 3.53
112 113 4.472286 CCACGTAAGCAAAGTTGTATTGG 58.528 43.478 0.00 0.00 45.62 3.16
113 114 3.911964 GCCACGTAAGCAAAGTTGTATTG 59.088 43.478 4.95 0.00 45.62 1.90
114 115 3.566322 TGCCACGTAAGCAAAGTTGTATT 59.434 39.130 9.80 0.00 45.62 1.89
115 116 3.058501 GTGCCACGTAAGCAAAGTTGTAT 60.059 43.478 13.45 0.00 43.02 2.29
116 117 2.288458 GTGCCACGTAAGCAAAGTTGTA 59.712 45.455 13.45 0.00 43.02 2.41
117 118 1.064952 GTGCCACGTAAGCAAAGTTGT 59.935 47.619 13.45 0.00 43.02 3.32
118 119 1.753956 GTGCCACGTAAGCAAAGTTG 58.246 50.000 13.45 0.00 43.02 3.16
119 120 0.306533 CGTGCCACGTAAGCAAAGTT 59.693 50.000 9.53 0.00 43.02 2.66
120 121 1.938861 CGTGCCACGTAAGCAAAGT 59.061 52.632 9.53 0.00 43.02 2.66
121 122 4.818417 CGTGCCACGTAAGCAAAG 57.182 55.556 9.53 7.78 43.02 2.77
131 132 5.810587 TCTCTCTTCATTAAATACGTGCCAC 59.189 40.000 0.00 0.00 0.00 5.01
132 133 5.972935 TCTCTCTTCATTAAATACGTGCCA 58.027 37.500 0.00 0.00 0.00 4.92
133 134 5.463724 CCTCTCTCTTCATTAAATACGTGCC 59.536 44.000 0.00 0.00 0.00 5.01
134 135 6.019479 CACCTCTCTCTTCATTAAATACGTGC 60.019 42.308 0.00 0.00 0.00 5.34
135 136 6.019479 GCACCTCTCTCTTCATTAAATACGTG 60.019 42.308 0.00 0.00 0.00 4.49
136 137 6.043411 GCACCTCTCTCTTCATTAAATACGT 58.957 40.000 0.00 0.00 0.00 3.57
137 138 6.276847 AGCACCTCTCTCTTCATTAAATACG 58.723 40.000 0.00 0.00 0.00 3.06
138 139 7.550906 ACAAGCACCTCTCTCTTCATTAAATAC 59.449 37.037 0.00 0.00 0.00 1.89
139 140 7.550551 CACAAGCACCTCTCTCTTCATTAAATA 59.449 37.037 0.00 0.00 0.00 1.40
140 141 6.373774 CACAAGCACCTCTCTCTTCATTAAAT 59.626 38.462 0.00 0.00 0.00 1.40
141 142 5.702670 CACAAGCACCTCTCTCTTCATTAAA 59.297 40.000 0.00 0.00 0.00 1.52
142 143 5.240891 CACAAGCACCTCTCTCTTCATTAA 58.759 41.667 0.00 0.00 0.00 1.40
143 144 4.323028 CCACAAGCACCTCTCTCTTCATTA 60.323 45.833 0.00 0.00 0.00 1.90
144 145 3.558746 CCACAAGCACCTCTCTCTTCATT 60.559 47.826 0.00 0.00 0.00 2.57
145 146 2.027377 CCACAAGCACCTCTCTCTTCAT 60.027 50.000 0.00 0.00 0.00 2.57
146 147 1.345741 CCACAAGCACCTCTCTCTTCA 59.654 52.381 0.00 0.00 0.00 3.02
147 148 1.346068 ACCACAAGCACCTCTCTCTTC 59.654 52.381 0.00 0.00 0.00 2.87
148 149 1.428869 ACCACAAGCACCTCTCTCTT 58.571 50.000 0.00 0.00 0.00 2.85
149 150 2.300437 GTTACCACAAGCACCTCTCTCT 59.700 50.000 0.00 0.00 0.00 3.10
150 151 2.300437 AGTTACCACAAGCACCTCTCTC 59.700 50.000 0.00 0.00 0.00 3.20
151 152 2.330216 AGTTACCACAAGCACCTCTCT 58.670 47.619 0.00 0.00 0.00 3.10
152 153 2.841442 AGTTACCACAAGCACCTCTC 57.159 50.000 0.00 0.00 0.00 3.20
153 154 2.028020 GCTAGTTACCACAAGCACCTCT 60.028 50.000 0.00 0.00 35.05 3.69
154 155 2.028020 AGCTAGTTACCACAAGCACCTC 60.028 50.000 0.00 0.00 37.44 3.85
155 156 1.978580 AGCTAGTTACCACAAGCACCT 59.021 47.619 0.00 0.00 37.44 4.00
156 157 2.474410 AGCTAGTTACCACAAGCACC 57.526 50.000 0.00 0.00 37.44 5.01
157 158 4.566987 ACTTAGCTAGTTACCACAAGCAC 58.433 43.478 0.00 0.00 37.44 4.40
158 159 4.884668 ACTTAGCTAGTTACCACAAGCA 57.115 40.909 0.00 0.00 37.44 3.91
167 168 6.377996 TGATGTTCCGGTAACTTAGCTAGTTA 59.622 38.462 0.00 10.09 45.22 2.24
169 170 4.708421 TGATGTTCCGGTAACTTAGCTAGT 59.292 41.667 0.00 0.00 38.99 2.57
170 171 5.041940 GTGATGTTCCGGTAACTTAGCTAG 58.958 45.833 0.00 0.00 38.99 3.42
171 172 4.463539 TGTGATGTTCCGGTAACTTAGCTA 59.536 41.667 0.00 0.00 38.99 3.32
172 173 3.259876 TGTGATGTTCCGGTAACTTAGCT 59.740 43.478 0.00 0.00 38.99 3.32
173 174 3.370061 GTGTGATGTTCCGGTAACTTAGC 59.630 47.826 0.00 0.00 38.99 3.09
174 175 4.387862 GTGTGTGATGTTCCGGTAACTTAG 59.612 45.833 0.00 0.00 38.99 2.18
175 176 4.039488 AGTGTGTGATGTTCCGGTAACTTA 59.961 41.667 0.00 0.00 38.99 2.24
176 177 3.135994 GTGTGTGATGTTCCGGTAACTT 58.864 45.455 0.00 3.15 38.99 2.66
177 178 2.367567 AGTGTGTGATGTTCCGGTAACT 59.632 45.455 0.00 0.00 38.99 2.24
178 179 2.735134 GAGTGTGTGATGTTCCGGTAAC 59.265 50.000 0.00 5.56 38.67 2.50
179 180 2.289195 GGAGTGTGTGATGTTCCGGTAA 60.289 50.000 0.00 0.00 0.00 2.85
180 181 1.274167 GGAGTGTGTGATGTTCCGGTA 59.726 52.381 0.00 0.00 0.00 4.02
181 182 0.034896 GGAGTGTGTGATGTTCCGGT 59.965 55.000 0.00 0.00 0.00 5.28
182 183 0.034756 TGGAGTGTGTGATGTTCCGG 59.965 55.000 0.00 0.00 0.00 5.14
183 184 1.800586 CTTGGAGTGTGTGATGTTCCG 59.199 52.381 0.00 0.00 0.00 4.30
184 185 3.126001 TCTTGGAGTGTGTGATGTTCC 57.874 47.619 0.00 0.00 0.00 3.62
185 186 4.335315 TGTTTCTTGGAGTGTGTGATGTTC 59.665 41.667 0.00 0.00 0.00 3.18
186 187 4.269183 TGTTTCTTGGAGTGTGTGATGTT 58.731 39.130 0.00 0.00 0.00 2.71
187 188 3.884895 TGTTTCTTGGAGTGTGTGATGT 58.115 40.909 0.00 0.00 0.00 3.06
188 189 4.898829 TTGTTTCTTGGAGTGTGTGATG 57.101 40.909 0.00 0.00 0.00 3.07
189 190 5.132502 TCATTGTTTCTTGGAGTGTGTGAT 58.867 37.500 0.00 0.00 0.00 3.06
190 191 4.522114 TCATTGTTTCTTGGAGTGTGTGA 58.478 39.130 0.00 0.00 0.00 3.58
191 192 4.336433 ACTCATTGTTTCTTGGAGTGTGTG 59.664 41.667 0.00 0.00 37.43 3.82
192 193 4.526970 ACTCATTGTTTCTTGGAGTGTGT 58.473 39.130 0.00 0.00 37.43 3.72
193 194 4.818546 AGACTCATTGTTTCTTGGAGTGTG 59.181 41.667 0.00 0.00 38.82 3.82
194 195 5.041191 AGACTCATTGTTTCTTGGAGTGT 57.959 39.130 0.00 0.00 38.82 3.55
195 196 8.660373 GTTATAGACTCATTGTTTCTTGGAGTG 58.340 37.037 0.00 0.00 38.82 3.51
196 197 7.824779 GGTTATAGACTCATTGTTTCTTGGAGT 59.175 37.037 0.00 0.00 41.22 3.85
197 198 8.043710 AGGTTATAGACTCATTGTTTCTTGGAG 58.956 37.037 0.00 0.00 0.00 3.86
198 199 7.918076 AGGTTATAGACTCATTGTTTCTTGGA 58.082 34.615 0.00 0.00 0.00 3.53
199 200 9.667107 TTAGGTTATAGACTCATTGTTTCTTGG 57.333 33.333 0.00 0.00 0.00 3.61
218 219 9.549078 TCATGCAACGATGTATTTATTAGGTTA 57.451 29.630 0.00 0.00 28.42 2.85
219 220 8.342634 GTCATGCAACGATGTATTTATTAGGTT 58.657 33.333 0.00 0.00 28.42 3.50
220 221 7.497579 TGTCATGCAACGATGTATTTATTAGGT 59.502 33.333 0.00 0.00 28.42 3.08
221 222 7.798516 GTGTCATGCAACGATGTATTTATTAGG 59.201 37.037 0.00 0.00 28.42 2.69
222 223 8.551205 AGTGTCATGCAACGATGTATTTATTAG 58.449 33.333 0.00 0.00 28.42 1.73
223 224 8.432110 AGTGTCATGCAACGATGTATTTATTA 57.568 30.769 0.00 0.00 28.42 0.98
224 225 7.320443 AGTGTCATGCAACGATGTATTTATT 57.680 32.000 0.00 0.00 28.42 1.40
225 226 6.925610 AGTGTCATGCAACGATGTATTTAT 57.074 33.333 0.00 0.00 28.42 1.40
226 227 9.705290 ATATAGTGTCATGCAACGATGTATTTA 57.295 29.630 0.00 0.00 28.42 1.40
227 228 6.925610 ATAGTGTCATGCAACGATGTATTT 57.074 33.333 0.00 0.00 28.42 1.40
228 229 9.358872 CTATATAGTGTCATGCAACGATGTATT 57.641 33.333 1.21 0.00 28.42 1.89
229 230 8.739972 TCTATATAGTGTCATGCAACGATGTAT 58.260 33.333 9.58 0.00 31.41 2.29
230 231 8.106247 TCTATATAGTGTCATGCAACGATGTA 57.894 34.615 9.58 0.00 0.00 2.29
231 232 6.981722 TCTATATAGTGTCATGCAACGATGT 58.018 36.000 9.58 0.00 0.00 3.06
232 233 7.543520 ACATCTATATAGTGTCATGCAACGATG 59.456 37.037 9.58 4.42 0.00 3.84
233 234 7.606349 ACATCTATATAGTGTCATGCAACGAT 58.394 34.615 9.58 0.00 0.00 3.73
234 235 6.981722 ACATCTATATAGTGTCATGCAACGA 58.018 36.000 9.58 0.00 0.00 3.85
235 236 7.148738 GGAACATCTATATAGTGTCATGCAACG 60.149 40.741 9.58 0.00 0.00 4.10
236 237 7.875041 AGGAACATCTATATAGTGTCATGCAAC 59.125 37.037 9.58 0.00 0.00 4.17
237 238 7.966812 AGGAACATCTATATAGTGTCATGCAA 58.033 34.615 9.58 0.00 0.00 4.08
238 239 7.544804 AGGAACATCTATATAGTGTCATGCA 57.455 36.000 9.58 0.00 0.00 3.96
239 240 7.976734 GGTAGGAACATCTATATAGTGTCATGC 59.023 40.741 9.58 5.49 0.00 4.06
240 241 8.470805 GGGTAGGAACATCTATATAGTGTCATG 58.529 40.741 9.58 8.29 0.00 3.07
241 242 8.177456 TGGGTAGGAACATCTATATAGTGTCAT 58.823 37.037 9.58 7.86 0.00 3.06
242 243 7.450634 GTGGGTAGGAACATCTATATAGTGTCA 59.549 40.741 9.58 4.08 0.00 3.58
243 244 7.670559 AGTGGGTAGGAACATCTATATAGTGTC 59.329 40.741 9.58 7.56 0.00 3.67
244 245 7.536625 AGTGGGTAGGAACATCTATATAGTGT 58.463 38.462 9.58 10.07 0.00 3.55
245 246 8.958506 GTAGTGGGTAGGAACATCTATATAGTG 58.041 40.741 9.58 9.51 0.00 2.74
246 247 7.828223 CGTAGTGGGTAGGAACATCTATATAGT 59.172 40.741 9.58 0.00 0.00 2.12
247 248 8.045507 TCGTAGTGGGTAGGAACATCTATATAG 58.954 40.741 3.10 3.10 0.00 1.31
248 249 7.921304 TCGTAGTGGGTAGGAACATCTATATA 58.079 38.462 0.00 0.00 0.00 0.86
249 250 6.787170 TCGTAGTGGGTAGGAACATCTATAT 58.213 40.000 0.00 0.00 0.00 0.86
250 251 6.191657 TCGTAGTGGGTAGGAACATCTATA 57.808 41.667 0.00 0.00 0.00 1.31
251 252 5.057843 TCGTAGTGGGTAGGAACATCTAT 57.942 43.478 0.00 0.00 0.00 1.98
252 253 4.508551 TCGTAGTGGGTAGGAACATCTA 57.491 45.455 0.00 0.00 0.00 1.98
253 254 3.377253 TCGTAGTGGGTAGGAACATCT 57.623 47.619 0.00 0.00 0.00 2.90
254 255 3.181478 CCTTCGTAGTGGGTAGGAACATC 60.181 52.174 0.00 0.00 33.09 3.06
255 256 2.764572 CCTTCGTAGTGGGTAGGAACAT 59.235 50.000 0.00 0.00 33.09 2.71
256 257 2.173519 CCTTCGTAGTGGGTAGGAACA 58.826 52.381 0.00 0.00 33.09 3.18
257 258 2.174360 ACCTTCGTAGTGGGTAGGAAC 58.826 52.381 0.00 0.00 33.09 3.62
258 259 2.610438 ACCTTCGTAGTGGGTAGGAA 57.390 50.000 0.00 0.00 34.92 3.36
259 260 3.287867 CTACCTTCGTAGTGGGTAGGA 57.712 52.381 9.71 0.00 43.70 2.94
300 301 9.991906 AGCAAGAACATAAACTAGTAACTTACA 57.008 29.630 0.00 0.00 0.00 2.41
303 304 9.726438 ATGAGCAAGAACATAAACTAGTAACTT 57.274 29.630 0.00 0.00 0.00 2.66
304 305 9.726438 AATGAGCAAGAACATAAACTAGTAACT 57.274 29.630 0.00 0.00 0.00 2.24
305 306 9.760660 CAATGAGCAAGAACATAAACTAGTAAC 57.239 33.333 0.00 0.00 0.00 2.50
306 307 9.502091 ACAATGAGCAAGAACATAAACTAGTAA 57.498 29.630 0.00 0.00 0.00 2.24
307 308 8.935844 CACAATGAGCAAGAACATAAACTAGTA 58.064 33.333 0.00 0.00 0.00 1.82
308 309 7.661437 TCACAATGAGCAAGAACATAAACTAGT 59.339 33.333 0.00 0.00 0.00 2.57
309 310 7.959651 GTCACAATGAGCAAGAACATAAACTAG 59.040 37.037 0.00 0.00 0.00 2.57
310 311 7.094805 GGTCACAATGAGCAAGAACATAAACTA 60.095 37.037 3.22 0.00 43.79 2.24
311 312 6.294176 GGTCACAATGAGCAAGAACATAAACT 60.294 38.462 3.22 0.00 43.79 2.66
312 313 5.858581 GGTCACAATGAGCAAGAACATAAAC 59.141 40.000 3.22 0.00 43.79 2.01
313 314 6.012658 GGTCACAATGAGCAAGAACATAAA 57.987 37.500 3.22 0.00 43.79 1.40
314 315 5.627499 GGTCACAATGAGCAAGAACATAA 57.373 39.130 3.22 0.00 43.79 1.90
324 325 1.740025 GTAAGGCTGGTCACAATGAGC 59.260 52.381 1.08 1.08 44.54 4.26
325 326 3.005554 CAGTAAGGCTGGTCACAATGAG 58.994 50.000 0.00 0.00 41.42 2.90
326 327 2.875672 GCAGTAAGGCTGGTCACAATGA 60.876 50.000 0.00 0.00 45.14 2.57
327 328 1.470098 GCAGTAAGGCTGGTCACAATG 59.530 52.381 0.00 0.00 45.14 2.82
328 329 1.614317 GGCAGTAAGGCTGGTCACAAT 60.614 52.381 0.00 0.00 45.14 2.71
329 330 0.250727 GGCAGTAAGGCTGGTCACAA 60.251 55.000 0.00 0.00 45.14 3.33
330 331 1.374947 GGCAGTAAGGCTGGTCACA 59.625 57.895 0.00 0.00 45.14 3.58
331 332 4.303257 GGCAGTAAGGCTGGTCAC 57.697 61.111 0.00 0.00 45.14 3.67
338 339 1.003718 ACACGGAAGGCAGTAAGGC 60.004 57.895 0.00 0.00 44.61 4.35
339 340 0.320374 TCACACGGAAGGCAGTAAGG 59.680 55.000 0.00 0.00 0.00 2.69
354 355 2.479560 CGATATCTGCCTGTCGTTCACA 60.480 50.000 0.34 0.00 0.00 3.58
384 386 0.969149 AGGATTCAGCACAGACGTCA 59.031 50.000 19.50 0.00 0.00 4.35
410 412 1.417517 TCTTGTCTGCTTGCTCCTCAA 59.582 47.619 0.00 0.00 0.00 3.02
427 429 1.430992 TCTTCAAGGACGGGGTTCTT 58.569 50.000 0.00 0.00 30.42 2.52
455 458 1.076044 ACAGGGCAAGTGGCTTTGT 60.076 52.632 4.74 7.17 44.01 2.83
456 459 1.662044 GACAGGGCAAGTGGCTTTG 59.338 57.895 4.74 6.59 44.01 2.77
459 462 1.538876 TAGGACAGGGCAAGTGGCT 60.539 57.895 4.74 0.00 44.01 4.75
473 476 4.458256 TGGGAGTATTATGGTCGTAGGA 57.542 45.455 0.00 0.00 0.00 2.94
492 495 1.063972 CAACCACACGCACAGTTGG 59.936 57.895 0.00 0.00 36.74 3.77
536 540 3.563808 TGATTTGCACTGTAGTTGACACC 59.436 43.478 0.00 0.00 33.31 4.16
556 560 6.858993 GTCGCACAGTTGGTTTAATTTAATGA 59.141 34.615 0.00 0.00 0.00 2.57
565 610 2.605837 TCAGTCGCACAGTTGGTTTA 57.394 45.000 0.00 0.00 0.00 2.01
601 646 2.624838 AGCCATTCAGAACTTGTTGGTG 59.375 45.455 2.38 0.00 35.18 4.17
605 650 2.744202 CGCTAGCCATTCAGAACTTGTT 59.256 45.455 9.66 0.00 0.00 2.83
634 679 2.842394 ATCACAGAAGCGCCGTCAGG 62.842 60.000 2.29 1.21 41.62 3.86
663 708 3.930848 CAGTTTTCGGGTAGCTTCGTATT 59.069 43.478 0.00 0.00 0.00 1.89
664 709 3.056322 ACAGTTTTCGGGTAGCTTCGTAT 60.056 43.478 0.00 0.00 0.00 3.06
665 710 2.297033 ACAGTTTTCGGGTAGCTTCGTA 59.703 45.455 0.00 0.00 0.00 3.43
666 711 1.069668 ACAGTTTTCGGGTAGCTTCGT 59.930 47.619 0.00 0.00 0.00 3.85
668 713 2.998670 GGTACAGTTTTCGGGTAGCTTC 59.001 50.000 0.00 0.00 33.56 3.86
669 714 2.289882 GGGTACAGTTTTCGGGTAGCTT 60.290 50.000 0.00 0.00 35.23 3.74
671 716 1.277273 AGGGTACAGTTTTCGGGTAGC 59.723 52.381 0.00 0.00 34.64 3.58
689 736 6.820335 TGTTAGTATGACATCTCAATGGAGG 58.180 40.000 0.00 0.00 41.69 4.30
692 739 8.184192 GGTTTTGTTAGTATGACATCTCAATGG 58.816 37.037 0.00 0.00 37.19 3.16
703 750 6.071784 TCAGTAGCTCGGTTTTGTTAGTATGA 60.072 38.462 0.00 0.00 0.00 2.15
709 756 4.927425 GTCATCAGTAGCTCGGTTTTGTTA 59.073 41.667 0.00 0.00 0.00 2.41
711 758 3.326747 GTCATCAGTAGCTCGGTTTTGT 58.673 45.455 0.00 0.00 0.00 2.83
856 909 1.720852 CTGCTTTTATGTGCGTTTGGC 59.279 47.619 0.00 0.00 43.96 4.52
865 918 0.258774 ATCGGGGCCTGCTTTTATGT 59.741 50.000 7.74 0.00 0.00 2.29
877 930 2.920384 GGAGGAGGAGATCGGGGC 60.920 72.222 0.00 0.00 0.00 5.80
892 946 1.371267 CGACGCGTTCTCTGTTGGA 60.371 57.895 15.53 0.00 0.00 3.53
893 947 3.000080 GCGACGCGTTCTCTGTTGG 62.000 63.158 15.53 0.00 0.00 3.77
896 953 2.729862 GTGCGACGCGTTCTCTGT 60.730 61.111 15.53 0.00 0.00 3.41
917 974 2.157738 CTGGGCTCTGTTTCTTGGAAG 58.842 52.381 0.00 0.00 0.00 3.46
918 975 1.819305 GCTGGGCTCTGTTTCTTGGAA 60.819 52.381 0.00 0.00 0.00 3.53
919 976 0.250901 GCTGGGCTCTGTTTCTTGGA 60.251 55.000 0.00 0.00 0.00 3.53
920 977 0.538057 TGCTGGGCTCTGTTTCTTGG 60.538 55.000 0.00 0.00 0.00 3.61
956 1013 2.101233 GGTTTTCTCTCTCGCCGGC 61.101 63.158 19.07 19.07 0.00 6.13
963 1020 5.133941 GGGTTTCTTCTTGGTTTTCTCTCT 58.866 41.667 0.00 0.00 0.00 3.10
964 1021 4.278669 GGGGTTTCTTCTTGGTTTTCTCTC 59.721 45.833 0.00 0.00 0.00 3.20
965 1022 4.215908 GGGGTTTCTTCTTGGTTTTCTCT 58.784 43.478 0.00 0.00 0.00 3.10
966 1023 3.321111 GGGGGTTTCTTCTTGGTTTTCTC 59.679 47.826 0.00 0.00 0.00 2.87
967 1024 3.305720 GGGGGTTTCTTCTTGGTTTTCT 58.694 45.455 0.00 0.00 0.00 2.52
968 1025 2.035449 CGGGGGTTTCTTCTTGGTTTTC 59.965 50.000 0.00 0.00 0.00 2.29
969 1026 2.036387 CGGGGGTTTCTTCTTGGTTTT 58.964 47.619 0.00 0.00 0.00 2.43
970 1027 1.215924 TCGGGGGTTTCTTCTTGGTTT 59.784 47.619 0.00 0.00 0.00 3.27
971 1028 0.848053 TCGGGGGTTTCTTCTTGGTT 59.152 50.000 0.00 0.00 0.00 3.67
972 1029 0.109913 GTCGGGGGTTTCTTCTTGGT 59.890 55.000 0.00 0.00 0.00 3.67
973 1030 0.109723 TGTCGGGGGTTTCTTCTTGG 59.890 55.000 0.00 0.00 0.00 3.61
974 1031 2.084546 GATGTCGGGGGTTTCTTCTTG 58.915 52.381 0.00 0.00 0.00 3.02
975 1032 1.004394 GGATGTCGGGGGTTTCTTCTT 59.996 52.381 0.00 0.00 0.00 2.52
1507 1564 3.531538 GATCTGGCGACCAAATCTAACA 58.468 45.455 5.31 0.00 29.04 2.41
1566 1625 1.134220 ACAAGAAGAAAGCCACGGACA 60.134 47.619 0.00 0.00 0.00 4.02
1598 1657 2.978010 CACACCGGCCACTGAACC 60.978 66.667 0.00 0.00 0.00 3.62
1682 1766 7.469537 AACAAGAATACTAGTAGCAGACAGT 57.530 36.000 8.85 0.00 0.00 3.55
1684 1768 7.892609 TGAAACAAGAATACTAGTAGCAGACA 58.107 34.615 8.85 0.00 0.00 3.41
1685 1769 8.030106 ACTGAAACAAGAATACTAGTAGCAGAC 58.970 37.037 8.85 0.00 0.00 3.51
1686 1770 8.123639 ACTGAAACAAGAATACTAGTAGCAGA 57.876 34.615 8.85 0.00 0.00 4.26
1687 1771 8.764524 AACTGAAACAAGAATACTAGTAGCAG 57.235 34.615 8.85 6.80 0.00 4.24
1688 1772 7.541091 CGAACTGAAACAAGAATACTAGTAGCA 59.459 37.037 8.85 0.00 0.00 3.49
1689 1773 7.754027 TCGAACTGAAACAAGAATACTAGTAGC 59.246 37.037 8.85 3.29 0.00 3.58
1690 1774 9.790389 ATCGAACTGAAACAAGAATACTAGTAG 57.210 33.333 8.85 0.00 0.00 2.57
1691 1775 9.569167 CATCGAACTGAAACAAGAATACTAGTA 57.431 33.333 4.77 4.77 0.00 1.82
1692 1776 7.063544 GCATCGAACTGAAACAAGAATACTAGT 59.936 37.037 0.00 0.00 0.00 2.57
1693 1777 7.063426 TGCATCGAACTGAAACAAGAATACTAG 59.937 37.037 0.00 0.00 0.00 2.57
1694 1778 6.871492 TGCATCGAACTGAAACAAGAATACTA 59.129 34.615 0.00 0.00 0.00 1.82
1695 1779 5.700832 TGCATCGAACTGAAACAAGAATACT 59.299 36.000 0.00 0.00 0.00 2.12
1696 1780 5.927030 TGCATCGAACTGAAACAAGAATAC 58.073 37.500 0.00 0.00 0.00 1.89
1697 1781 6.741992 ATGCATCGAACTGAAACAAGAATA 57.258 33.333 0.00 0.00 0.00 1.75
1698 1782 5.633830 ATGCATCGAACTGAAACAAGAAT 57.366 34.783 0.00 0.00 0.00 2.40
1699 1783 5.437289 AATGCATCGAACTGAAACAAGAA 57.563 34.783 0.00 0.00 0.00 2.52
1700 1784 5.239306 AGAAATGCATCGAACTGAAACAAGA 59.761 36.000 0.00 0.00 0.00 3.02
1701 1785 5.341462 CAGAAATGCATCGAACTGAAACAAG 59.659 40.000 0.00 0.00 0.00 3.16
1702 1786 5.214417 CAGAAATGCATCGAACTGAAACAA 58.786 37.500 0.00 0.00 0.00 2.83
1703 1787 4.786507 CAGAAATGCATCGAACTGAAACA 58.213 39.130 0.00 0.00 0.00 2.83
1704 1788 3.605486 GCAGAAATGCATCGAACTGAAAC 59.395 43.478 19.20 5.35 34.41 2.78
1705 1789 3.366273 GGCAGAAATGCATCGAACTGAAA 60.366 43.478 19.20 0.00 36.33 2.69
1706 1790 2.162208 GGCAGAAATGCATCGAACTGAA 59.838 45.455 19.20 0.00 36.33 3.02
1707 1791 1.739466 GGCAGAAATGCATCGAACTGA 59.261 47.619 19.20 0.00 36.33 3.41
1708 1792 1.530441 CGGCAGAAATGCATCGAACTG 60.530 52.381 0.00 8.62 36.33 3.16
1709 1793 0.729116 CGGCAGAAATGCATCGAACT 59.271 50.000 0.00 0.00 36.33 3.01
1710 1794 0.863119 GCGGCAGAAATGCATCGAAC 60.863 55.000 0.00 0.00 36.33 3.95
1734 1818 5.641209 AGCAGCAGTTAACAGATCTAGTTTG 59.359 40.000 8.61 8.77 0.00 2.93
1792 1893 8.255111 AGATCACACCTTAAGATGATGACATA 57.745 34.615 16.77 0.00 36.82 2.29
1842 1943 1.767759 GGCTGGTGCATAGTCCATTT 58.232 50.000 0.00 0.00 41.91 2.32
1894 1995 1.598601 TGGTCCGTTGCGACTTTAAAC 59.401 47.619 1.84 0.00 33.07 2.01
1940 2041 6.343716 AGATACTCTGATATCCACAAGCAG 57.656 41.667 0.00 0.00 32.76 4.24
1941 2042 5.244851 GGAGATACTCTGATATCCACAAGCA 59.755 44.000 0.00 0.00 37.20 3.91
1942 2043 5.244851 TGGAGATACTCTGATATCCACAAGC 59.755 44.000 0.00 0.00 41.28 4.01
1943 2044 6.572119 GCTGGAGATACTCTGATATCCACAAG 60.572 46.154 0.00 0.00 41.28 3.16
1944 2045 5.244851 GCTGGAGATACTCTGATATCCACAA 59.755 44.000 0.00 0.00 41.28 3.33
1945 2046 4.769488 GCTGGAGATACTCTGATATCCACA 59.231 45.833 0.00 0.00 41.28 4.17
1946 2047 4.159506 GGCTGGAGATACTCTGATATCCAC 59.840 50.000 0.00 0.00 41.28 4.02
1952 2053 2.363680 CAACGGCTGGAGATACTCTGAT 59.636 50.000 0.00 0.00 0.00 2.90
1975 2076 0.968393 AATTTTATGCGCCCCGGTGT 60.968 50.000 4.18 0.00 0.00 4.16
1977 2078 1.671901 CCAATTTTATGCGCCCCGGT 61.672 55.000 4.18 0.00 0.00 5.28
2025 2130 2.012673 GAATCAACTCGCCTTCATGCT 58.987 47.619 0.00 0.00 0.00 3.79
2179 2311 4.179298 CTCGCCCCTTAGTTGTAGTTTAC 58.821 47.826 0.00 0.00 0.00 2.01
2250 2389 2.824041 GCCGCCAATGACGATGGT 60.824 61.111 0.00 0.00 40.23 3.55
2261 2400 2.224159 AAGGAGAAGAAGGCCGCCA 61.224 57.895 13.15 0.00 0.00 5.69
2293 2432 3.064324 GCAATGCCGAGCAGGGTT 61.064 61.111 0.00 0.00 43.65 4.11
2393 2539 3.036084 CGCTTCGAACAGCACCGT 61.036 61.111 9.63 0.00 40.09 4.83
2453 2600 4.536687 GAAATGGGCGCGCGAAGG 62.537 66.667 37.18 4.39 0.00 3.46
2455 2602 3.798650 CTGAAATGGGCGCGCGAA 61.799 61.111 37.18 18.92 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.