Multiple sequence alignment - TraesCS7B01G236600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G236600 chr7B 100.000 2561 0 0 1 2561 440812837 440815397 0.000000e+00 4730.0
1 TraesCS7B01G236600 chr7B 92.490 253 19 0 1297 1549 440332360 440332612 1.870000e-96 363.0
2 TraesCS7B01G236600 chr7B 89.377 273 29 0 1280 1552 440377186 440377458 6.780000e-91 344.0
3 TraesCS7B01G236600 chr7D 89.210 1418 84 26 743 2113 423708966 423710361 0.000000e+00 1707.0
4 TraesCS7B01G236600 chr7D 91.586 309 21 2 1 309 423708626 423708929 3.050000e-114 422.0
5 TraesCS7B01G236600 chr7D 85.581 430 13 5 2155 2561 423710606 423711009 3.070000e-109 405.0
6 TraesCS7B01G236600 chr7D 92.446 278 21 0 1277 1554 423711185 423711462 5.130000e-107 398.0
7 TraesCS7B01G236600 chr7D 82.589 448 52 17 1108 1552 423642018 423642442 3.110000e-99 372.0
8 TraesCS7B01G236600 chr7D 90.873 252 23 0 1298 1549 423551625 423551876 3.160000e-89 339.0
9 TraesCS7B01G236600 chr7D 74.882 211 50 3 413 621 535639763 535639972 2.710000e-15 93.5
10 TraesCS7B01G236600 chr7A 90.019 1032 54 19 746 1771 509469591 509468603 0.000000e+00 1290.0
11 TraesCS7B01G236600 chr7A 92.701 274 20 0 1279 1552 509526622 509526349 1.850000e-106 396.0
12 TraesCS7B01G236600 chr7A 90.493 284 21 2 1277 1554 509467668 509467385 1.120000e-98 370.0
13 TraesCS7B01G236600 chr7A 87.025 316 24 8 1 307 509469946 509469639 8.780000e-90 340.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G236600 chr7B 440812837 440815397 2560 False 4730.000000 4730 100.00000 1 2561 1 chr7B.!!$F3 2560
1 TraesCS7B01G236600 chr7D 423708626 423711462 2836 False 733.000000 1707 89.70575 1 2561 4 chr7D.!!$F4 2560
2 TraesCS7B01G236600 chr7A 509467385 509469946 2561 True 666.666667 1290 89.17900 1 1771 3 chr7A.!!$R2 1770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
699 709 0.037882 CGCCCATATGATCTCGCTGT 60.038 55.0 3.65 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2470 2819 0.527113 CAATTGAGCCATTGGTGCGA 59.473 50.0 0.0 0.0 0.0 5.1 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 2.592308 GACATGCTCCCTGACCCC 59.408 66.667 0.00 0.00 0.00 4.95
98 99 2.052690 CCTGACCCCGAGATCGTGT 61.053 63.158 1.09 0.00 37.74 4.49
116 117 6.438259 TCGTGTTTTGGTTTATGACTTTGA 57.562 33.333 0.00 0.00 0.00 2.69
135 143 8.549338 ACTTTGAAACCTAGTCTATTTACAGC 57.451 34.615 0.00 0.00 0.00 4.40
140 148 5.764487 ACCTAGTCTATTTACAGCGGTAC 57.236 43.478 0.00 0.00 0.00 3.34
181 189 3.110358 GTTGGTTTGCTTCGGTTGTAAC 58.890 45.455 0.00 0.00 0.00 2.50
223 231 1.006043 CAGGACCAGAGTAGAGACCCA 59.994 57.143 0.00 0.00 0.00 4.51
267 275 0.319555 CGGGAAGTGAAGTGAAGCGA 60.320 55.000 0.00 0.00 0.00 4.93
351 361 1.003718 GTCCTTTGGACCAGACCCG 60.004 63.158 5.49 0.00 46.19 5.28
352 362 1.152204 TCCTTTGGACCAGACCCGA 60.152 57.895 0.00 0.00 0.00 5.14
353 363 1.192146 TCCTTTGGACCAGACCCGAG 61.192 60.000 0.00 0.00 0.00 4.63
354 364 1.376037 CTTTGGACCAGACCCGAGC 60.376 63.158 0.00 0.00 0.00 5.03
355 365 2.804828 CTTTGGACCAGACCCGAGCC 62.805 65.000 0.00 0.00 0.00 4.70
356 366 4.631740 TGGACCAGACCCGAGCCA 62.632 66.667 0.00 0.00 0.00 4.75
357 367 3.083997 GGACCAGACCCGAGCCAT 61.084 66.667 0.00 0.00 0.00 4.40
358 368 1.760875 GGACCAGACCCGAGCCATA 60.761 63.158 0.00 0.00 0.00 2.74
359 369 1.442148 GACCAGACCCGAGCCATAC 59.558 63.158 0.00 0.00 0.00 2.39
360 370 2.029307 GACCAGACCCGAGCCATACC 62.029 65.000 0.00 0.00 0.00 2.73
361 371 2.063979 CCAGACCCGAGCCATACCA 61.064 63.158 0.00 0.00 0.00 3.25
362 372 1.410850 CCAGACCCGAGCCATACCAT 61.411 60.000 0.00 0.00 0.00 3.55
363 373 1.338107 CAGACCCGAGCCATACCATA 58.662 55.000 0.00 0.00 0.00 2.74
364 374 1.902508 CAGACCCGAGCCATACCATAT 59.097 52.381 0.00 0.00 0.00 1.78
365 375 3.096852 CAGACCCGAGCCATACCATATA 58.903 50.000 0.00 0.00 0.00 0.86
366 376 3.131223 CAGACCCGAGCCATACCATATAG 59.869 52.174 0.00 0.00 0.00 1.31
367 377 3.097614 GACCCGAGCCATACCATATAGT 58.902 50.000 0.00 0.00 0.00 2.12
368 378 3.097614 ACCCGAGCCATACCATATAGTC 58.902 50.000 0.00 0.00 0.00 2.59
369 379 3.245658 ACCCGAGCCATACCATATAGTCT 60.246 47.826 0.00 0.00 0.00 3.24
370 380 3.131223 CCCGAGCCATACCATATAGTCTG 59.869 52.174 0.00 0.00 0.00 3.51
371 381 3.131223 CCGAGCCATACCATATAGTCTGG 59.869 52.174 1.95 1.95 37.14 3.86
376 386 4.836825 CCATACCATATAGTCTGGCCTTG 58.163 47.826 3.32 0.00 37.27 3.61
377 387 4.532126 CCATACCATATAGTCTGGCCTTGA 59.468 45.833 3.32 0.00 37.27 3.02
378 388 5.337894 CCATACCATATAGTCTGGCCTTGAG 60.338 48.000 3.32 0.00 37.27 3.02
379 389 3.658725 ACCATATAGTCTGGCCTTGAGT 58.341 45.455 3.32 8.09 37.27 3.41
380 390 3.643792 ACCATATAGTCTGGCCTTGAGTC 59.356 47.826 3.32 0.00 37.27 3.36
381 391 3.007398 CCATATAGTCTGGCCTTGAGTCC 59.993 52.174 3.32 0.00 0.00 3.85
382 392 2.559381 ATAGTCTGGCCTTGAGTCCT 57.441 50.000 3.32 0.00 0.00 3.85
383 393 3.689872 ATAGTCTGGCCTTGAGTCCTA 57.310 47.619 3.32 1.35 0.00 2.94
384 394 1.562783 AGTCTGGCCTTGAGTCCTAC 58.437 55.000 3.32 0.00 0.00 3.18
385 395 0.537653 GTCTGGCCTTGAGTCCTACC 59.462 60.000 3.32 0.00 0.00 3.18
386 396 0.116342 TCTGGCCTTGAGTCCTACCA 59.884 55.000 3.32 0.00 0.00 3.25
387 397 0.984230 CTGGCCTTGAGTCCTACCAA 59.016 55.000 3.32 0.00 0.00 3.67
388 398 1.351017 CTGGCCTTGAGTCCTACCAAA 59.649 52.381 3.32 0.00 0.00 3.28
389 399 1.073284 TGGCCTTGAGTCCTACCAAAC 59.927 52.381 3.32 0.00 0.00 2.93
390 400 1.351350 GGCCTTGAGTCCTACCAAACT 59.649 52.381 0.00 0.00 0.00 2.66
391 401 2.570302 GGCCTTGAGTCCTACCAAACTA 59.430 50.000 0.00 0.00 0.00 2.24
392 402 3.200165 GGCCTTGAGTCCTACCAAACTAT 59.800 47.826 0.00 0.00 0.00 2.12
393 403 4.192317 GCCTTGAGTCCTACCAAACTATG 58.808 47.826 0.00 0.00 0.00 2.23
394 404 4.192317 CCTTGAGTCCTACCAAACTATGC 58.808 47.826 0.00 0.00 0.00 3.14
395 405 4.080863 CCTTGAGTCCTACCAAACTATGCT 60.081 45.833 0.00 0.00 0.00 3.79
396 406 5.128827 CCTTGAGTCCTACCAAACTATGCTA 59.871 44.000 0.00 0.00 0.00 3.49
397 407 6.351881 CCTTGAGTCCTACCAAACTATGCTAA 60.352 42.308 0.00 0.00 0.00 3.09
398 408 6.614694 TGAGTCCTACCAAACTATGCTAAA 57.385 37.500 0.00 0.00 0.00 1.85
399 409 6.640518 TGAGTCCTACCAAACTATGCTAAAG 58.359 40.000 0.00 0.00 0.00 1.85
400 410 6.212791 TGAGTCCTACCAAACTATGCTAAAGT 59.787 38.462 0.00 0.00 0.00 2.66
401 411 7.398047 TGAGTCCTACCAAACTATGCTAAAGTA 59.602 37.037 0.00 0.00 0.00 2.24
402 412 8.320338 AGTCCTACCAAACTATGCTAAAGTAT 57.680 34.615 0.00 0.00 0.00 2.12
403 413 8.204836 AGTCCTACCAAACTATGCTAAAGTATG 58.795 37.037 0.00 0.00 0.00 2.39
404 414 8.202137 GTCCTACCAAACTATGCTAAAGTATGA 58.798 37.037 0.00 0.00 0.00 2.15
405 415 8.202137 TCCTACCAAACTATGCTAAAGTATGAC 58.798 37.037 0.00 0.00 0.00 3.06
406 416 8.204836 CCTACCAAACTATGCTAAAGTATGACT 58.795 37.037 0.00 0.00 0.00 3.41
409 419 8.978472 ACCAAACTATGCTAAAGTATGACTAGA 58.022 33.333 0.00 0.00 0.00 2.43
410 420 9.469807 CCAAACTATGCTAAAGTATGACTAGAG 57.530 37.037 0.00 0.00 0.00 2.43
411 421 9.469807 CAAACTATGCTAAAGTATGACTAGAGG 57.530 37.037 0.00 0.00 0.00 3.69
412 422 8.998277 AACTATGCTAAAGTATGACTAGAGGA 57.002 34.615 0.00 0.00 0.00 3.71
413 423 8.998277 ACTATGCTAAAGTATGACTAGAGGAA 57.002 34.615 0.00 0.00 0.00 3.36
414 424 9.594936 ACTATGCTAAAGTATGACTAGAGGAAT 57.405 33.333 0.00 0.00 0.00 3.01
418 428 9.197306 TGCTAAAGTATGACTAGAGGAATTACA 57.803 33.333 0.00 0.00 0.00 2.41
424 434 8.353684 AGTATGACTAGAGGAATTACAATCACG 58.646 37.037 0.00 0.00 0.00 4.35
425 435 6.769134 TGACTAGAGGAATTACAATCACGA 57.231 37.500 0.00 0.00 0.00 4.35
426 436 6.561614 TGACTAGAGGAATTACAATCACGAC 58.438 40.000 0.00 0.00 0.00 4.34
427 437 5.579718 ACTAGAGGAATTACAATCACGACG 58.420 41.667 0.00 0.00 0.00 5.12
428 438 4.713824 AGAGGAATTACAATCACGACGA 57.286 40.909 0.00 0.00 0.00 4.20
429 439 5.068234 AGAGGAATTACAATCACGACGAA 57.932 39.130 0.00 0.00 0.00 3.85
430 440 4.863131 AGAGGAATTACAATCACGACGAAC 59.137 41.667 0.00 0.00 0.00 3.95
431 441 4.562082 AGGAATTACAATCACGACGAACA 58.438 39.130 0.00 0.00 0.00 3.18
432 442 5.175859 AGGAATTACAATCACGACGAACAT 58.824 37.500 0.00 0.00 0.00 2.71
433 443 5.063438 AGGAATTACAATCACGACGAACATG 59.937 40.000 0.00 0.00 0.00 3.21
434 444 5.062934 GGAATTACAATCACGACGAACATGA 59.937 40.000 0.00 0.00 0.00 3.07
435 445 6.401688 GGAATTACAATCACGACGAACATGAA 60.402 38.462 0.00 0.00 0.00 2.57
436 446 6.662414 ATTACAATCACGACGAACATGAAT 57.338 33.333 0.00 0.00 0.00 2.57
437 447 7.764695 ATTACAATCACGACGAACATGAATA 57.235 32.000 0.00 0.00 0.00 1.75
438 448 7.583860 TTACAATCACGACGAACATGAATAA 57.416 32.000 0.00 0.00 0.00 1.40
439 449 6.662414 ACAATCACGACGAACATGAATAAT 57.338 33.333 0.00 0.00 0.00 1.28
440 450 7.764695 ACAATCACGACGAACATGAATAATA 57.235 32.000 0.00 0.00 0.00 0.98
441 451 7.618442 ACAATCACGACGAACATGAATAATAC 58.382 34.615 0.00 0.00 0.00 1.89
442 452 7.491372 ACAATCACGACGAACATGAATAATACT 59.509 33.333 0.00 0.00 0.00 2.12
443 453 8.964150 CAATCACGACGAACATGAATAATACTA 58.036 33.333 0.00 0.00 0.00 1.82
444 454 8.729529 ATCACGACGAACATGAATAATACTAG 57.270 34.615 0.00 0.00 0.00 2.57
445 455 7.922837 TCACGACGAACATGAATAATACTAGA 58.077 34.615 0.00 0.00 0.00 2.43
446 456 8.400186 TCACGACGAACATGAATAATACTAGAA 58.600 33.333 0.00 0.00 0.00 2.10
447 457 8.469902 CACGACGAACATGAATAATACTAGAAC 58.530 37.037 0.00 0.00 0.00 3.01
448 458 8.404000 ACGACGAACATGAATAATACTAGAACT 58.596 33.333 0.00 0.00 0.00 3.01
449 459 9.874215 CGACGAACATGAATAATACTAGAACTA 57.126 33.333 0.00 0.00 0.00 2.24
451 461 9.661187 ACGAACATGAATAATACTAGAACTACG 57.339 33.333 0.00 0.00 0.00 3.51
452 462 9.661187 CGAACATGAATAATACTAGAACTACGT 57.339 33.333 0.00 0.00 0.00 3.57
466 476 5.437383 GAACTACGTTCTGACATACTTGC 57.563 43.478 0.00 0.00 39.23 4.01
467 477 4.785511 ACTACGTTCTGACATACTTGCT 57.214 40.909 0.00 0.00 0.00 3.91
468 478 5.135508 ACTACGTTCTGACATACTTGCTT 57.864 39.130 0.00 0.00 0.00 3.91
469 479 5.539048 ACTACGTTCTGACATACTTGCTTT 58.461 37.500 0.00 0.00 0.00 3.51
470 480 6.684686 ACTACGTTCTGACATACTTGCTTTA 58.315 36.000 0.00 0.00 0.00 1.85
471 481 7.149973 ACTACGTTCTGACATACTTGCTTTAA 58.850 34.615 0.00 0.00 0.00 1.52
472 482 7.817962 ACTACGTTCTGACATACTTGCTTTAAT 59.182 33.333 0.00 0.00 0.00 1.40
473 483 7.061752 ACGTTCTGACATACTTGCTTTAATC 57.938 36.000 0.00 0.00 0.00 1.75
474 484 6.874134 ACGTTCTGACATACTTGCTTTAATCT 59.126 34.615 0.00 0.00 0.00 2.40
475 485 7.063544 ACGTTCTGACATACTTGCTTTAATCTC 59.936 37.037 0.00 0.00 0.00 2.75
476 486 7.464710 CGTTCTGACATACTTGCTTTAATCTCC 60.465 40.741 0.00 0.00 0.00 3.71
477 487 7.187824 TCTGACATACTTGCTTTAATCTCCT 57.812 36.000 0.00 0.00 0.00 3.69
478 488 7.044181 TCTGACATACTTGCTTTAATCTCCTG 58.956 38.462 0.00 0.00 0.00 3.86
479 489 6.115446 TGACATACTTGCTTTAATCTCCTGG 58.885 40.000 0.00 0.00 0.00 4.45
480 490 6.070251 TGACATACTTGCTTTAATCTCCTGGA 60.070 38.462 0.00 0.00 0.00 3.86
481 491 6.904626 ACATACTTGCTTTAATCTCCTGGAT 58.095 36.000 0.00 0.00 35.97 3.41
482 492 6.769822 ACATACTTGCTTTAATCTCCTGGATG 59.230 38.462 0.00 0.00 34.45 3.51
483 493 5.441718 ACTTGCTTTAATCTCCTGGATGA 57.558 39.130 0.00 0.00 34.45 2.92
484 494 6.011122 ACTTGCTTTAATCTCCTGGATGAT 57.989 37.500 0.00 0.00 34.45 2.45
485 495 7.141758 ACTTGCTTTAATCTCCTGGATGATA 57.858 36.000 0.00 0.00 34.45 2.15
486 496 7.577303 ACTTGCTTTAATCTCCTGGATGATAA 58.423 34.615 0.00 0.00 34.45 1.75
487 497 8.055181 ACTTGCTTTAATCTCCTGGATGATAAA 58.945 33.333 0.00 2.76 34.45 1.40
488 498 8.821686 TTGCTTTAATCTCCTGGATGATAAAA 57.178 30.769 0.00 0.00 34.45 1.52
489 499 8.455903 TGCTTTAATCTCCTGGATGATAAAAG 57.544 34.615 0.00 5.72 34.45 2.27
490 500 7.013655 TGCTTTAATCTCCTGGATGATAAAAGC 59.986 37.037 23.00 23.00 41.18 3.51
491 501 7.013655 GCTTTAATCTCCTGGATGATAAAAGCA 59.986 37.037 23.91 0.00 40.90 3.91
492 502 9.075678 CTTTAATCTCCTGGATGATAAAAGCAT 57.924 33.333 0.00 0.00 34.45 3.79
494 504 7.992754 AATCTCCTGGATGATAAAAGCATAC 57.007 36.000 0.00 0.00 34.45 2.39
495 505 6.753913 TCTCCTGGATGATAAAAGCATACT 57.246 37.500 0.00 0.00 0.00 2.12
496 506 7.141758 TCTCCTGGATGATAAAAGCATACTT 57.858 36.000 0.00 0.00 37.90 2.24
497 507 8.223330 ATCTCCTGGATGATAAAAGCATACTTT 58.777 33.333 0.00 0.00 39.37 2.66
498 508 7.500227 TCTCCTGGATGATAAAAGCATACTTTG 59.500 37.037 0.00 0.00 45.48 2.77
499 509 7.345691 TCCTGGATGATAAAAGCATACTTTGA 58.654 34.615 0.00 0.00 45.48 2.69
500 510 8.000709 TCCTGGATGATAAAAGCATACTTTGAT 58.999 33.333 0.00 0.00 45.48 2.57
508 518 9.846248 GATAAAAGCATACTTTGATCTGTTTGT 57.154 29.630 8.14 0.00 45.19 2.83
509 519 7.935338 AAAAGCATACTTTGATCTGTTTGTG 57.065 32.000 0.00 0.00 45.48 3.33
510 520 6.639632 AAGCATACTTTGATCTGTTTGTGT 57.360 33.333 0.00 0.00 29.41 3.72
511 521 6.246420 AGCATACTTTGATCTGTTTGTGTC 57.754 37.500 0.00 0.00 0.00 3.67
512 522 6.000219 AGCATACTTTGATCTGTTTGTGTCT 59.000 36.000 0.00 0.00 0.00 3.41
513 523 6.148480 AGCATACTTTGATCTGTTTGTGTCTC 59.852 38.462 0.00 0.00 0.00 3.36
514 524 6.621596 GCATACTTTGATCTGTTTGTGTCTCC 60.622 42.308 0.00 0.00 0.00 3.71
515 525 3.809832 ACTTTGATCTGTTTGTGTCTCCG 59.190 43.478 0.00 0.00 0.00 4.63
516 526 1.795768 TGATCTGTTTGTGTCTCCGC 58.204 50.000 0.00 0.00 0.00 5.54
517 527 1.344438 TGATCTGTTTGTGTCTCCGCT 59.656 47.619 0.00 0.00 0.00 5.52
518 528 1.996191 GATCTGTTTGTGTCTCCGCTC 59.004 52.381 0.00 0.00 0.00 5.03
519 529 1.040646 TCTGTTTGTGTCTCCGCTCT 58.959 50.000 0.00 0.00 0.00 4.09
520 530 1.412710 TCTGTTTGTGTCTCCGCTCTT 59.587 47.619 0.00 0.00 0.00 2.85
521 531 1.795286 CTGTTTGTGTCTCCGCTCTTC 59.205 52.381 0.00 0.00 0.00 2.87
522 532 1.138069 TGTTTGTGTCTCCGCTCTTCA 59.862 47.619 0.00 0.00 0.00 3.02
523 533 2.210116 GTTTGTGTCTCCGCTCTTCAA 58.790 47.619 0.00 0.00 0.00 2.69
524 534 1.865865 TTGTGTCTCCGCTCTTCAAC 58.134 50.000 0.00 0.00 0.00 3.18
525 535 0.750249 TGTGTCTCCGCTCTTCAACA 59.250 50.000 0.00 0.00 0.00 3.33
526 536 1.344438 TGTGTCTCCGCTCTTCAACAT 59.656 47.619 0.00 0.00 0.00 2.71
527 537 1.728971 GTGTCTCCGCTCTTCAACATG 59.271 52.381 0.00 0.00 0.00 3.21
528 538 0.723981 GTCTCCGCTCTTCAACATGC 59.276 55.000 0.00 0.00 0.00 4.06
529 539 0.610174 TCTCCGCTCTTCAACATGCT 59.390 50.000 0.00 0.00 0.00 3.79
530 540 0.725686 CTCCGCTCTTCAACATGCTG 59.274 55.000 0.00 0.00 0.00 4.41
531 541 0.321346 TCCGCTCTTCAACATGCTGA 59.679 50.000 0.00 0.00 0.00 4.26
532 542 0.445436 CCGCTCTTCAACATGCTGAC 59.555 55.000 0.00 0.00 0.00 3.51
533 543 1.150827 CGCTCTTCAACATGCTGACA 58.849 50.000 0.00 0.00 0.00 3.58
534 544 1.128136 CGCTCTTCAACATGCTGACAG 59.872 52.381 0.00 0.00 0.00 3.51
535 545 1.135746 GCTCTTCAACATGCTGACAGC 60.136 52.381 20.86 20.86 42.82 4.40
536 546 1.467734 CTCTTCAACATGCTGACAGCC 59.532 52.381 24.33 7.41 41.51 4.85
537 547 1.202794 TCTTCAACATGCTGACAGCCA 60.203 47.619 24.33 12.86 41.51 4.75
538 548 0.953727 TTCAACATGCTGACAGCCAC 59.046 50.000 24.33 0.00 41.51 5.01
539 549 0.890542 TCAACATGCTGACAGCCACC 60.891 55.000 24.33 0.00 41.51 4.61
540 550 1.151221 AACATGCTGACAGCCACCA 59.849 52.632 24.33 6.31 41.51 4.17
541 551 0.467844 AACATGCTGACAGCCACCAA 60.468 50.000 24.33 5.91 41.51 3.67
542 552 0.892358 ACATGCTGACAGCCACCAAG 60.892 55.000 24.33 10.03 41.51 3.61
543 553 0.892358 CATGCTGACAGCCACCAAGT 60.892 55.000 24.33 0.00 41.51 3.16
544 554 0.178981 ATGCTGACAGCCACCAAGTT 60.179 50.000 24.33 0.00 41.51 2.66
545 555 0.472044 TGCTGACAGCCACCAAGTTA 59.528 50.000 24.33 0.00 41.51 2.24
546 556 1.073763 TGCTGACAGCCACCAAGTTAT 59.926 47.619 24.33 0.00 41.51 1.89
547 557 1.740025 GCTGACAGCCACCAAGTTATC 59.260 52.381 17.01 0.00 34.48 1.75
548 558 2.875672 GCTGACAGCCACCAAGTTATCA 60.876 50.000 17.01 0.00 34.48 2.15
549 559 2.744202 CTGACAGCCACCAAGTTATCAC 59.256 50.000 0.00 0.00 0.00 3.06
550 560 2.371841 TGACAGCCACCAAGTTATCACT 59.628 45.455 0.00 0.00 33.11 3.41
551 561 3.003480 GACAGCCACCAAGTTATCACTC 58.997 50.000 0.00 0.00 30.45 3.51
552 562 2.639839 ACAGCCACCAAGTTATCACTCT 59.360 45.455 0.00 0.00 30.45 3.24
553 563 3.838317 ACAGCCACCAAGTTATCACTCTA 59.162 43.478 0.00 0.00 30.45 2.43
554 564 4.471386 ACAGCCACCAAGTTATCACTCTAT 59.529 41.667 0.00 0.00 30.45 1.98
555 565 5.661312 ACAGCCACCAAGTTATCACTCTATA 59.339 40.000 0.00 0.00 30.45 1.31
556 566 6.327626 ACAGCCACCAAGTTATCACTCTATAT 59.672 38.462 0.00 0.00 30.45 0.86
557 567 7.509318 ACAGCCACCAAGTTATCACTCTATATA 59.491 37.037 0.00 0.00 30.45 0.86
558 568 8.535335 CAGCCACCAAGTTATCACTCTATATAT 58.465 37.037 0.00 0.00 30.45 0.86
559 569 8.754080 AGCCACCAAGTTATCACTCTATATATC 58.246 37.037 0.00 0.00 30.45 1.63
560 570 8.531982 GCCACCAAGTTATCACTCTATATATCA 58.468 37.037 0.00 0.00 30.45 2.15
561 571 9.862371 CCACCAAGTTATCACTCTATATATCAC 57.138 37.037 0.00 0.00 30.45 3.06
573 583 9.149225 CACTCTATATATCACTTGGAAGATTGC 57.851 37.037 0.00 0.00 0.00 3.56
574 584 9.099071 ACTCTATATATCACTTGGAAGATTGCT 57.901 33.333 0.00 0.00 0.00 3.91
575 585 9.585099 CTCTATATATCACTTGGAAGATTGCTC 57.415 37.037 0.00 0.00 0.00 4.26
576 586 8.535335 TCTATATATCACTTGGAAGATTGCTCC 58.465 37.037 0.00 0.00 0.00 4.70
577 587 3.726557 ATCACTTGGAAGATTGCTCCA 57.273 42.857 0.00 0.00 0.00 3.86
578 588 3.726557 TCACTTGGAAGATTGCTCCAT 57.273 42.857 0.00 0.00 33.06 3.41
579 589 4.038271 TCACTTGGAAGATTGCTCCATT 57.962 40.909 0.00 0.00 33.06 3.16
580 590 3.760151 TCACTTGGAAGATTGCTCCATTG 59.240 43.478 0.00 0.00 33.06 2.82
581 591 3.508793 CACTTGGAAGATTGCTCCATTGT 59.491 43.478 0.00 0.00 33.06 2.71
582 592 4.701651 CACTTGGAAGATTGCTCCATTGTA 59.298 41.667 0.00 0.00 33.06 2.41
583 593 4.946157 ACTTGGAAGATTGCTCCATTGTAG 59.054 41.667 0.00 0.00 33.06 2.74
584 594 4.574674 TGGAAGATTGCTCCATTGTAGT 57.425 40.909 0.00 0.00 0.00 2.73
585 595 4.264253 TGGAAGATTGCTCCATTGTAGTG 58.736 43.478 0.00 0.00 0.00 2.74
586 596 3.065925 GGAAGATTGCTCCATTGTAGTGC 59.934 47.826 0.00 0.00 0.00 4.40
587 597 3.641434 AGATTGCTCCATTGTAGTGCT 57.359 42.857 0.00 0.00 0.00 4.40
588 598 4.760530 AGATTGCTCCATTGTAGTGCTA 57.239 40.909 0.00 0.00 0.00 3.49
589 599 5.102953 AGATTGCTCCATTGTAGTGCTAA 57.897 39.130 0.00 0.00 0.00 3.09
590 600 4.878397 AGATTGCTCCATTGTAGTGCTAAC 59.122 41.667 0.00 0.00 0.00 2.34
591 601 3.694043 TGCTCCATTGTAGTGCTAACA 57.306 42.857 0.00 0.00 0.00 2.41
592 602 4.220693 TGCTCCATTGTAGTGCTAACAT 57.779 40.909 0.00 0.00 0.00 2.71
593 603 5.351948 TGCTCCATTGTAGTGCTAACATA 57.648 39.130 0.00 0.00 0.00 2.29
594 604 5.739959 TGCTCCATTGTAGTGCTAACATAA 58.260 37.500 0.00 0.00 0.00 1.90
595 605 5.817296 TGCTCCATTGTAGTGCTAACATAAG 59.183 40.000 0.00 0.00 0.00 1.73
596 606 5.277538 GCTCCATTGTAGTGCTAACATAAGC 60.278 44.000 0.00 0.00 43.08 3.09
597 607 5.123227 TCCATTGTAGTGCTAACATAAGCC 58.877 41.667 0.00 0.00 42.05 4.35
598 608 4.275936 CCATTGTAGTGCTAACATAAGCCC 59.724 45.833 0.00 0.00 42.05 5.19
599 609 3.553828 TGTAGTGCTAACATAAGCCCC 57.446 47.619 0.00 0.00 42.05 5.80
600 610 3.112263 TGTAGTGCTAACATAAGCCCCT 58.888 45.455 0.00 0.00 42.05 4.79
601 611 3.134081 TGTAGTGCTAACATAAGCCCCTC 59.866 47.826 0.00 0.00 42.05 4.30
602 612 2.196595 AGTGCTAACATAAGCCCCTCA 58.803 47.619 0.00 0.00 42.05 3.86
603 613 2.092914 AGTGCTAACATAAGCCCCTCAC 60.093 50.000 0.00 0.00 42.05 3.51
604 614 1.134521 TGCTAACATAAGCCCCTCACG 60.135 52.381 0.00 0.00 42.05 4.35
605 615 1.810412 GCTAACATAAGCCCCTCACGG 60.810 57.143 0.00 0.00 36.45 4.94
606 616 1.760613 CTAACATAAGCCCCTCACGGA 59.239 52.381 0.00 0.00 0.00 4.69
607 617 1.213296 AACATAAGCCCCTCACGGAT 58.787 50.000 0.00 0.00 0.00 4.18
608 618 2.097110 ACATAAGCCCCTCACGGATA 57.903 50.000 0.00 0.00 0.00 2.59
609 619 1.971357 ACATAAGCCCCTCACGGATAG 59.029 52.381 0.00 0.00 0.00 2.08
610 620 0.977395 ATAAGCCCCTCACGGATAGC 59.023 55.000 0.00 0.00 0.00 2.97
611 621 0.105658 TAAGCCCCTCACGGATAGCT 60.106 55.000 0.00 0.00 33.97 3.32
612 622 0.105658 AAGCCCCTCACGGATAGCTA 60.106 55.000 0.00 0.00 32.78 3.32
613 623 0.540830 AGCCCCTCACGGATAGCTAG 60.541 60.000 0.00 0.00 31.78 3.42
614 624 0.539901 GCCCCTCACGGATAGCTAGA 60.540 60.000 0.00 0.00 0.00 2.43
615 625 1.996798 CCCCTCACGGATAGCTAGAA 58.003 55.000 0.00 0.00 0.00 2.10
616 626 2.530701 CCCCTCACGGATAGCTAGAAT 58.469 52.381 0.00 0.00 0.00 2.40
617 627 2.900546 CCCCTCACGGATAGCTAGAATT 59.099 50.000 0.00 0.00 0.00 2.17
618 628 3.325135 CCCCTCACGGATAGCTAGAATTT 59.675 47.826 0.00 0.00 0.00 1.82
619 629 4.561105 CCCTCACGGATAGCTAGAATTTC 58.439 47.826 0.00 0.00 0.00 2.17
620 630 4.039245 CCCTCACGGATAGCTAGAATTTCA 59.961 45.833 0.00 0.00 0.00 2.69
621 631 4.985409 CCTCACGGATAGCTAGAATTTCAC 59.015 45.833 0.00 0.00 0.00 3.18
622 632 5.451937 CCTCACGGATAGCTAGAATTTCACA 60.452 44.000 0.00 0.00 0.00 3.58
623 633 5.348986 TCACGGATAGCTAGAATTTCACAC 58.651 41.667 0.00 0.00 0.00 3.82
624 634 5.127194 TCACGGATAGCTAGAATTTCACACT 59.873 40.000 0.00 0.00 0.00 3.55
625 635 5.233050 CACGGATAGCTAGAATTTCACACTG 59.767 44.000 0.00 0.00 0.00 3.66
626 636 4.747108 CGGATAGCTAGAATTTCACACTGG 59.253 45.833 0.00 0.00 0.00 4.00
627 637 5.451937 CGGATAGCTAGAATTTCACACTGGA 60.452 44.000 0.00 0.00 0.00 3.86
628 638 5.988561 GGATAGCTAGAATTTCACACTGGAG 59.011 44.000 0.00 0.00 0.00 3.86
629 639 4.899352 AGCTAGAATTTCACACTGGAGT 57.101 40.909 0.00 0.00 0.00 3.85
630 640 7.201920 GGATAGCTAGAATTTCACACTGGAGTA 60.202 40.741 0.00 0.00 0.00 2.59
631 641 5.725362 AGCTAGAATTTCACACTGGAGTAC 58.275 41.667 0.00 0.00 0.00 2.73
632 642 5.246203 AGCTAGAATTTCACACTGGAGTACA 59.754 40.000 0.00 0.00 0.00 2.90
633 643 6.070538 AGCTAGAATTTCACACTGGAGTACAT 60.071 38.462 0.00 0.00 0.00 2.29
634 644 6.256757 GCTAGAATTTCACACTGGAGTACATC 59.743 42.308 0.00 0.00 0.00 3.06
635 645 6.114187 AGAATTTCACACTGGAGTACATCA 57.886 37.500 0.00 0.00 0.00 3.07
636 646 6.715280 AGAATTTCACACTGGAGTACATCAT 58.285 36.000 0.00 0.00 0.00 2.45
637 647 6.820656 AGAATTTCACACTGGAGTACATCATC 59.179 38.462 0.00 0.00 0.00 2.92
638 648 5.482163 TTTCACACTGGAGTACATCATCA 57.518 39.130 0.00 0.00 0.00 3.07
639 649 4.456280 TCACACTGGAGTACATCATCAC 57.544 45.455 0.00 0.00 0.00 3.06
640 650 3.831911 TCACACTGGAGTACATCATCACA 59.168 43.478 0.00 0.00 0.00 3.58
641 651 4.467438 TCACACTGGAGTACATCATCACAT 59.533 41.667 0.00 0.00 0.00 3.21
642 652 4.569564 CACACTGGAGTACATCATCACATG 59.430 45.833 0.00 0.00 0.00 3.21
643 653 4.467438 ACACTGGAGTACATCATCACATGA 59.533 41.667 0.00 0.00 44.55 3.07
644 654 5.046376 ACACTGGAGTACATCATCACATGAA 60.046 40.000 0.00 0.00 43.50 2.57
645 655 5.522824 CACTGGAGTACATCATCACATGAAG 59.477 44.000 0.00 0.00 43.50 3.02
646 656 5.423290 ACTGGAGTACATCATCACATGAAGA 59.577 40.000 0.00 0.00 43.50 2.87
647 657 6.070596 ACTGGAGTACATCATCACATGAAGAA 60.071 38.462 0.00 0.00 43.50 2.52
648 658 6.710278 TGGAGTACATCATCACATGAAGAAA 58.290 36.000 0.00 0.00 43.50 2.52
649 659 6.820152 TGGAGTACATCATCACATGAAGAAAG 59.180 38.462 0.00 0.00 43.50 2.62
650 660 7.044181 GGAGTACATCATCACATGAAGAAAGA 58.956 38.462 0.00 0.72 43.50 2.52
651 661 7.714377 GGAGTACATCATCACATGAAGAAAGAT 59.286 37.037 0.00 3.02 43.50 2.40
652 662 8.434733 AGTACATCATCACATGAAGAAAGATG 57.565 34.615 21.79 21.79 43.50 2.90
653 663 6.132791 ACATCATCACATGAAGAAAGATGC 57.867 37.500 22.50 0.00 43.50 3.91
654 664 5.650703 ACATCATCACATGAAGAAAGATGCA 59.349 36.000 22.50 0.00 43.50 3.96
655 665 6.321435 ACATCATCACATGAAGAAAGATGCAT 59.679 34.615 22.50 0.00 43.50 3.96
656 666 6.131544 TCATCACATGAAGAAAGATGCATG 57.868 37.500 2.46 0.00 42.75 4.06
658 668 5.556355 TCACATGAAGAAAGATGCATGTC 57.444 39.130 2.46 0.00 45.82 3.06
659 669 5.250982 TCACATGAAGAAAGATGCATGTCT 58.749 37.500 2.46 0.53 45.82 3.41
660 670 5.123344 TCACATGAAGAAAGATGCATGTCTG 59.877 40.000 2.46 0.00 45.82 3.51
661 671 4.142447 ACATGAAGAAAGATGCATGTCTGC 60.142 41.667 2.46 3.18 45.82 4.26
670 680 4.584688 CATGTCTGCACGAGCTGA 57.415 55.556 10.18 10.18 44.99 4.26
675 685 3.430779 TCTGCACGAGCTGAAGATG 57.569 52.632 11.70 0.00 44.35 2.90
676 686 0.890683 TCTGCACGAGCTGAAGATGA 59.109 50.000 11.70 0.00 44.35 2.92
677 687 1.479730 TCTGCACGAGCTGAAGATGAT 59.520 47.619 11.70 0.00 44.35 2.45
678 688 2.093816 TCTGCACGAGCTGAAGATGATT 60.094 45.455 11.70 0.00 44.35 2.57
679 689 2.676839 CTGCACGAGCTGAAGATGATTT 59.323 45.455 6.36 0.00 41.71 2.17
680 690 2.674852 TGCACGAGCTGAAGATGATTTC 59.325 45.455 6.36 0.00 42.74 2.17
681 691 2.285486 GCACGAGCTGAAGATGATTTCG 60.285 50.000 0.00 0.00 37.91 3.46
682 692 1.929836 ACGAGCTGAAGATGATTTCGC 59.070 47.619 0.00 0.00 0.00 4.70
683 693 1.260033 CGAGCTGAAGATGATTTCGCC 59.740 52.381 0.00 0.00 31.57 5.54
684 694 1.601430 GAGCTGAAGATGATTTCGCCC 59.399 52.381 0.00 0.00 31.57 6.13
685 695 1.065199 AGCTGAAGATGATTTCGCCCA 60.065 47.619 0.00 0.00 31.57 5.36
686 696 1.952296 GCTGAAGATGATTTCGCCCAT 59.048 47.619 0.00 0.00 0.00 4.00
687 697 3.141398 GCTGAAGATGATTTCGCCCATA 58.859 45.455 0.00 0.00 0.00 2.74
688 698 3.755378 GCTGAAGATGATTTCGCCCATAT 59.245 43.478 0.00 0.00 0.00 1.78
689 699 4.379186 GCTGAAGATGATTTCGCCCATATG 60.379 45.833 0.00 0.00 0.00 1.78
690 700 4.971939 TGAAGATGATTTCGCCCATATGA 58.028 39.130 3.65 0.00 0.00 2.15
691 701 5.563592 TGAAGATGATTTCGCCCATATGAT 58.436 37.500 3.65 0.00 0.00 2.45
692 702 5.645067 TGAAGATGATTTCGCCCATATGATC 59.355 40.000 3.65 0.00 0.00 2.92
693 703 5.432680 AGATGATTTCGCCCATATGATCT 57.567 39.130 3.65 0.00 0.00 2.75
694 704 5.426504 AGATGATTTCGCCCATATGATCTC 58.573 41.667 3.65 0.00 0.00 2.75
695 705 3.588955 TGATTTCGCCCATATGATCTCG 58.411 45.455 3.65 2.21 0.00 4.04
696 706 1.795768 TTTCGCCCATATGATCTCGC 58.204 50.000 3.65 0.00 0.00 5.03
697 707 0.969149 TTCGCCCATATGATCTCGCT 59.031 50.000 3.65 0.00 0.00 4.93
698 708 0.244721 TCGCCCATATGATCTCGCTG 59.755 55.000 3.65 0.00 0.00 5.18
699 709 0.037882 CGCCCATATGATCTCGCTGT 60.038 55.000 3.65 0.00 0.00 4.40
700 710 1.202348 CGCCCATATGATCTCGCTGTA 59.798 52.381 3.65 0.00 0.00 2.74
701 711 2.733542 CGCCCATATGATCTCGCTGTAG 60.734 54.545 3.65 0.00 0.00 2.74
702 712 2.886081 CCCATATGATCTCGCTGTAGC 58.114 52.381 3.65 0.00 37.78 3.58
703 713 2.232208 CCCATATGATCTCGCTGTAGCA 59.768 50.000 3.65 0.00 42.21 3.49
704 714 3.118847 CCCATATGATCTCGCTGTAGCAT 60.119 47.826 3.65 0.00 42.21 3.79
705 715 3.864003 CCATATGATCTCGCTGTAGCATG 59.136 47.826 3.65 0.00 42.21 4.06
706 716 1.793258 ATGATCTCGCTGTAGCATGC 58.207 50.000 10.51 10.51 42.21 4.06
707 717 0.249615 TGATCTCGCTGTAGCATGCC 60.250 55.000 15.66 0.00 42.21 4.40
708 718 0.249615 GATCTCGCTGTAGCATGCCA 60.250 55.000 15.66 5.15 42.21 4.92
709 719 0.249784 ATCTCGCTGTAGCATGCCAG 60.250 55.000 15.66 16.41 42.21 4.85
710 720 1.153489 CTCGCTGTAGCATGCCAGT 60.153 57.895 20.60 4.68 42.21 4.00
847 882 1.071605 CCCTTCGTTTCGCAGAGAAG 58.928 55.000 0.00 0.00 40.40 2.85
915 951 1.298157 TTCCATGAAGTTGCGCTCCG 61.298 55.000 9.73 0.00 0.00 4.63
918 954 0.729116 CATGAAGTTGCGCTCCGAAT 59.271 50.000 9.73 0.00 0.00 3.34
920 956 1.234821 TGAAGTTGCGCTCCGAATTT 58.765 45.000 9.73 0.00 0.00 1.82
921 957 1.606668 TGAAGTTGCGCTCCGAATTTT 59.393 42.857 9.73 0.00 0.00 1.82
1578 1650 7.570875 GCTGTATAGCTAGATGCACATTTTGAG 60.571 40.741 3.91 0.00 46.57 3.02
1591 1663 5.762711 GCACATTTTGAGGGGTGTTAATTTT 59.237 36.000 0.00 0.00 33.88 1.82
1592 1664 6.293353 GCACATTTTGAGGGGTGTTAATTTTG 60.293 38.462 0.00 0.00 33.88 2.44
1594 1666 7.281999 CACATTTTGAGGGGTGTTAATTTTGTT 59.718 33.333 0.00 0.00 0.00 2.83
1595 1667 8.487028 ACATTTTGAGGGGTGTTAATTTTGTTA 58.513 29.630 0.00 0.00 0.00 2.41
1651 1723 3.243434 ACGTCTACTCAATTATCTGGGCG 60.243 47.826 0.00 0.00 0.00 6.13
1695 1767 4.160642 TGATGCATCTGTCCTATTTGCT 57.839 40.909 26.32 0.00 34.47 3.91
1700 1783 5.847304 TGCATCTGTCCTATTTGCTAGTAG 58.153 41.667 0.00 0.00 34.47 2.57
1701 1784 5.363868 TGCATCTGTCCTATTTGCTAGTAGT 59.636 40.000 0.00 0.00 34.47 2.73
1702 1785 6.549736 TGCATCTGTCCTATTTGCTAGTAGTA 59.450 38.462 0.00 0.00 34.47 1.82
1703 1786 7.233553 TGCATCTGTCCTATTTGCTAGTAGTAT 59.766 37.037 0.00 0.00 34.47 2.12
1804 1892 0.623723 TGTGGGGGTGATAGCCTTTC 59.376 55.000 0.00 0.00 35.71 2.62
1808 1896 2.381961 TGGGGGTGATAGCCTTTCTTTT 59.618 45.455 0.00 0.00 35.71 2.27
1809 1897 3.024547 GGGGGTGATAGCCTTTCTTTTC 58.975 50.000 0.00 0.00 35.71 2.29
1810 1898 3.024547 GGGGTGATAGCCTTTCTTTTCC 58.975 50.000 0.00 0.00 35.71 3.13
1832 1920 6.296803 TCCCTTCTTCTGAAAACCTTCTTAC 58.703 40.000 0.00 0.00 32.33 2.34
1878 1966 0.960364 AGAACGTCCGCAATGGCATT 60.960 50.000 6.96 6.96 41.24 3.56
1915 2003 3.669949 AGAGGGCCCTTATAAGTGTCAT 58.330 45.455 29.39 0.00 0.00 3.06
1918 2006 4.303794 AGGGCCCTTATAAGTGTCATACA 58.696 43.478 22.28 0.00 0.00 2.29
2002 2091 7.282224 GGATGTCAACATTACCTGTTAAGCATA 59.718 37.037 0.00 0.00 46.43 3.14
2318 2658 0.527565 CGCAGTTTCCCCTTCATTGG 59.472 55.000 0.00 0.00 0.00 3.16
2341 2681 0.531657 CGCATTTGGCCCTGAATCAA 59.468 50.000 0.00 0.00 40.31 2.57
2379 2720 0.459489 TTTGACCACAGGCTTGCAAC 59.541 50.000 0.00 0.00 0.00 4.17
2412 2761 8.990163 TTTTATTCGGCTTATAATTCTTCCCT 57.010 30.769 0.00 0.00 0.00 4.20
2423 2772 6.882768 ATAATTCTTCCCTGACAGAGTCTT 57.117 37.500 3.32 0.00 33.15 3.01
2512 2861 3.140814 GGGCTTCGTCCCCATTGC 61.141 66.667 3.47 0.00 42.36 3.56
2514 2863 1.678970 GGCTTCGTCCCCATTGCTT 60.679 57.895 0.00 0.00 0.00 3.91
2516 2865 0.678048 GCTTCGTCCCCATTGCTTCT 60.678 55.000 0.00 0.00 0.00 2.85
2517 2866 1.373570 CTTCGTCCCCATTGCTTCTC 58.626 55.000 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 5.120208 AGTCATAAACCAAAACACGATCTCG 59.880 40.000 0.00 0.00 46.33 4.04
116 117 5.672421 ACCGCTGTAAATAGACTAGGTTT 57.328 39.130 0.00 0.00 0.00 3.27
135 143 0.179094 TTTAGCGCCATCTGGTACCG 60.179 55.000 2.29 2.25 37.57 4.02
140 148 1.605710 CCAAGATTTAGCGCCATCTGG 59.394 52.381 13.49 10.98 38.53 3.86
223 231 3.206150 ACACACGATTTTGAGCTGAACT 58.794 40.909 0.00 0.00 0.00 3.01
334 344 1.152204 TCGGGTCTGGTCCAAAGGA 60.152 57.895 0.00 0.00 0.00 3.36
335 345 1.296715 CTCGGGTCTGGTCCAAAGG 59.703 63.158 0.00 0.00 0.00 3.11
336 346 1.376037 GCTCGGGTCTGGTCCAAAG 60.376 63.158 0.00 0.00 0.00 2.77
337 347 2.747686 GCTCGGGTCTGGTCCAAA 59.252 61.111 0.00 0.00 0.00 3.28
338 348 3.319198 GGCTCGGGTCTGGTCCAA 61.319 66.667 0.00 0.00 0.00 3.53
339 349 2.523740 TATGGCTCGGGTCTGGTCCA 62.524 60.000 0.00 0.00 0.00 4.02
340 350 1.760875 TATGGCTCGGGTCTGGTCC 60.761 63.158 0.00 0.00 0.00 4.46
341 351 1.442148 GTATGGCTCGGGTCTGGTC 59.558 63.158 0.00 0.00 0.00 4.02
342 352 2.064581 GGTATGGCTCGGGTCTGGT 61.065 63.158 0.00 0.00 0.00 4.00
343 353 1.410850 ATGGTATGGCTCGGGTCTGG 61.411 60.000 0.00 0.00 0.00 3.86
344 354 1.338107 TATGGTATGGCTCGGGTCTG 58.662 55.000 0.00 0.00 0.00 3.51
345 355 2.327325 ATATGGTATGGCTCGGGTCT 57.673 50.000 0.00 0.00 0.00 3.85
346 356 3.097614 ACTATATGGTATGGCTCGGGTC 58.902 50.000 0.00 0.00 0.00 4.46
347 357 3.097614 GACTATATGGTATGGCTCGGGT 58.902 50.000 0.00 0.00 0.00 5.28
348 358 3.131223 CAGACTATATGGTATGGCTCGGG 59.869 52.174 5.98 0.00 0.00 5.14
349 359 3.131223 CCAGACTATATGGTATGGCTCGG 59.869 52.174 18.47 0.00 40.86 4.63
350 360 4.377839 CCAGACTATATGGTATGGCTCG 57.622 50.000 18.47 0.00 40.86 5.03
355 365 5.247110 ACTCAAGGCCAGACTATATGGTATG 59.753 44.000 5.01 6.85 40.17 2.39
356 366 5.407049 ACTCAAGGCCAGACTATATGGTAT 58.593 41.667 5.01 0.00 40.17 2.73
357 367 4.816126 ACTCAAGGCCAGACTATATGGTA 58.184 43.478 5.01 0.00 40.17 3.25
358 368 3.643792 GACTCAAGGCCAGACTATATGGT 59.356 47.826 5.01 0.00 40.17 3.55
359 369 3.007398 GGACTCAAGGCCAGACTATATGG 59.993 52.174 5.01 0.00 41.04 2.74
360 370 3.900601 AGGACTCAAGGCCAGACTATATG 59.099 47.826 5.01 0.00 0.00 1.78
361 371 4.206244 AGGACTCAAGGCCAGACTATAT 57.794 45.455 5.01 0.00 0.00 0.86
362 372 3.689872 AGGACTCAAGGCCAGACTATA 57.310 47.619 5.01 0.00 0.00 1.31
363 373 2.559381 AGGACTCAAGGCCAGACTAT 57.441 50.000 5.01 0.00 0.00 2.12
364 374 2.623502 GGTAGGACTCAAGGCCAGACTA 60.624 54.545 5.01 0.00 0.00 2.59
365 375 1.562783 GTAGGACTCAAGGCCAGACT 58.437 55.000 5.01 0.76 0.00 3.24
366 376 0.537653 GGTAGGACTCAAGGCCAGAC 59.462 60.000 5.01 1.57 0.00 3.51
367 377 0.116342 TGGTAGGACTCAAGGCCAGA 59.884 55.000 5.01 0.64 0.00 3.86
368 378 0.984230 TTGGTAGGACTCAAGGCCAG 59.016 55.000 5.01 0.00 0.00 4.85
369 379 1.073284 GTTTGGTAGGACTCAAGGCCA 59.927 52.381 5.01 0.00 0.00 5.36
370 380 1.351350 AGTTTGGTAGGACTCAAGGCC 59.649 52.381 0.00 0.00 0.00 5.19
371 381 2.861147 AGTTTGGTAGGACTCAAGGC 57.139 50.000 0.00 0.00 0.00 4.35
372 382 4.080863 AGCATAGTTTGGTAGGACTCAAGG 60.081 45.833 0.00 0.00 33.29 3.61
373 383 5.091261 AGCATAGTTTGGTAGGACTCAAG 57.909 43.478 0.00 0.00 33.29 3.02
374 384 6.614694 TTAGCATAGTTTGGTAGGACTCAA 57.385 37.500 0.00 0.00 39.36 3.02
375 385 6.212791 ACTTTAGCATAGTTTGGTAGGACTCA 59.787 38.462 0.00 0.00 39.36 3.41
376 386 6.641474 ACTTTAGCATAGTTTGGTAGGACTC 58.359 40.000 0.00 0.00 39.36 3.36
377 387 6.622427 ACTTTAGCATAGTTTGGTAGGACT 57.378 37.500 0.00 0.00 39.36 3.85
378 388 8.202137 TCATACTTTAGCATAGTTTGGTAGGAC 58.798 37.037 0.00 0.00 39.36 3.85
379 389 8.202137 GTCATACTTTAGCATAGTTTGGTAGGA 58.798 37.037 0.00 0.00 39.36 2.94
380 390 8.204836 AGTCATACTTTAGCATAGTTTGGTAGG 58.795 37.037 0.00 0.00 39.36 3.18
383 393 8.978472 TCTAGTCATACTTTAGCATAGTTTGGT 58.022 33.333 0.00 0.00 39.88 3.67
384 394 9.469807 CTCTAGTCATACTTTAGCATAGTTTGG 57.530 37.037 0.00 0.00 0.00 3.28
385 395 9.469807 CCTCTAGTCATACTTTAGCATAGTTTG 57.530 37.037 0.00 0.00 0.00 2.93
386 396 9.422681 TCCTCTAGTCATACTTTAGCATAGTTT 57.577 33.333 0.00 0.00 0.00 2.66
387 397 8.998277 TCCTCTAGTCATACTTTAGCATAGTT 57.002 34.615 0.00 0.00 0.00 2.24
388 398 8.998277 TTCCTCTAGTCATACTTTAGCATAGT 57.002 34.615 0.00 0.00 0.00 2.12
392 402 9.197306 TGTAATTCCTCTAGTCATACTTTAGCA 57.803 33.333 0.00 0.00 0.00 3.49
398 408 8.353684 CGTGATTGTAATTCCTCTAGTCATACT 58.646 37.037 0.00 0.00 0.00 2.12
399 409 8.350722 TCGTGATTGTAATTCCTCTAGTCATAC 58.649 37.037 0.00 0.00 0.00 2.39
400 410 8.350722 GTCGTGATTGTAATTCCTCTAGTCATA 58.649 37.037 0.00 0.00 0.00 2.15
401 411 7.203910 GTCGTGATTGTAATTCCTCTAGTCAT 58.796 38.462 0.00 0.00 0.00 3.06
402 412 6.561614 GTCGTGATTGTAATTCCTCTAGTCA 58.438 40.000 0.00 0.00 0.00 3.41
403 413 5.681982 CGTCGTGATTGTAATTCCTCTAGTC 59.318 44.000 0.00 0.00 0.00 2.59
404 414 5.356190 TCGTCGTGATTGTAATTCCTCTAGT 59.644 40.000 0.00 0.00 0.00 2.57
405 415 5.817988 TCGTCGTGATTGTAATTCCTCTAG 58.182 41.667 0.00 0.00 0.00 2.43
406 416 5.823209 TCGTCGTGATTGTAATTCCTCTA 57.177 39.130 0.00 0.00 0.00 2.43
407 417 4.713824 TCGTCGTGATTGTAATTCCTCT 57.286 40.909 0.00 0.00 0.00 3.69
408 418 4.624024 TGTTCGTCGTGATTGTAATTCCTC 59.376 41.667 0.00 0.00 0.00 3.71
409 419 4.562082 TGTTCGTCGTGATTGTAATTCCT 58.438 39.130 0.00 0.00 0.00 3.36
410 420 4.914312 TGTTCGTCGTGATTGTAATTCC 57.086 40.909 0.00 0.00 0.00 3.01
411 421 6.089920 TCATGTTCGTCGTGATTGTAATTC 57.910 37.500 0.00 0.00 37.18 2.17
412 422 6.474819 TTCATGTTCGTCGTGATTGTAATT 57.525 33.333 0.00 0.00 41.08 1.40
413 423 6.662414 ATTCATGTTCGTCGTGATTGTAAT 57.338 33.333 0.00 0.00 41.08 1.89
414 424 7.583860 TTATTCATGTTCGTCGTGATTGTAA 57.416 32.000 0.00 4.86 41.08 2.41
415 425 7.764695 ATTATTCATGTTCGTCGTGATTGTA 57.235 32.000 0.00 0.54 41.08 2.41
416 426 6.662414 ATTATTCATGTTCGTCGTGATTGT 57.338 33.333 0.00 1.21 41.08 2.71
417 427 7.841486 AGTATTATTCATGTTCGTCGTGATTG 58.159 34.615 0.00 0.00 41.08 2.67
418 428 9.181805 CTAGTATTATTCATGTTCGTCGTGATT 57.818 33.333 0.00 5.96 41.08 2.57
419 429 8.565416 TCTAGTATTATTCATGTTCGTCGTGAT 58.435 33.333 0.00 1.89 41.08 3.06
420 430 7.922837 TCTAGTATTATTCATGTTCGTCGTGA 58.077 34.615 0.00 2.31 39.93 4.35
421 431 8.469902 GTTCTAGTATTATTCATGTTCGTCGTG 58.530 37.037 0.00 0.00 34.61 4.35
422 432 8.404000 AGTTCTAGTATTATTCATGTTCGTCGT 58.596 33.333 0.00 0.00 0.00 4.34
423 433 8.783999 AGTTCTAGTATTATTCATGTTCGTCG 57.216 34.615 0.00 0.00 0.00 5.12
425 435 9.661187 CGTAGTTCTAGTATTATTCATGTTCGT 57.339 33.333 0.00 0.00 0.00 3.85
426 436 9.661187 ACGTAGTTCTAGTATTATTCATGTTCG 57.339 33.333 0.00 0.00 37.78 3.95
447 457 7.576750 TTAAAGCAAGTATGTCAGAACGTAG 57.423 36.000 0.00 0.00 0.00 3.51
448 458 8.033038 AGATTAAAGCAAGTATGTCAGAACGTA 58.967 33.333 0.00 0.00 0.00 3.57
449 459 6.874134 AGATTAAAGCAAGTATGTCAGAACGT 59.126 34.615 0.00 0.00 0.00 3.99
450 460 7.295952 AGATTAAAGCAAGTATGTCAGAACG 57.704 36.000 0.00 0.00 0.00 3.95
451 461 7.550906 AGGAGATTAAAGCAAGTATGTCAGAAC 59.449 37.037 0.00 0.00 0.00 3.01
452 462 7.550551 CAGGAGATTAAAGCAAGTATGTCAGAA 59.449 37.037 0.00 0.00 0.00 3.02
453 463 7.044181 CAGGAGATTAAAGCAAGTATGTCAGA 58.956 38.462 0.00 0.00 0.00 3.27
454 464 6.259608 CCAGGAGATTAAAGCAAGTATGTCAG 59.740 42.308 0.00 0.00 0.00 3.51
455 465 6.070251 TCCAGGAGATTAAAGCAAGTATGTCA 60.070 38.462 0.00 0.00 0.00 3.58
456 466 6.349300 TCCAGGAGATTAAAGCAAGTATGTC 58.651 40.000 0.00 0.00 0.00 3.06
457 467 6.313519 TCCAGGAGATTAAAGCAAGTATGT 57.686 37.500 0.00 0.00 0.00 2.29
458 468 6.994496 TCATCCAGGAGATTAAAGCAAGTATG 59.006 38.462 0.00 0.00 30.59 2.39
459 469 7.141758 TCATCCAGGAGATTAAAGCAAGTAT 57.858 36.000 0.00 0.00 30.59 2.12
460 470 6.560003 TCATCCAGGAGATTAAAGCAAGTA 57.440 37.500 0.00 0.00 30.59 2.24
461 471 5.441718 TCATCCAGGAGATTAAAGCAAGT 57.558 39.130 0.00 0.00 30.59 3.16
462 472 8.455903 TTTATCATCCAGGAGATTAAAGCAAG 57.544 34.615 0.00 0.00 30.59 4.01
463 473 8.821686 TTTTATCATCCAGGAGATTAAAGCAA 57.178 30.769 0.00 0.00 30.59 3.91
464 474 8.455903 CTTTTATCATCCAGGAGATTAAAGCA 57.544 34.615 17.87 2.39 35.47 3.91
466 476 8.455903 TGCTTTTATCATCCAGGAGATTAAAG 57.544 34.615 21.54 21.54 40.80 1.85
468 478 9.507329 GTATGCTTTTATCATCCAGGAGATTAA 57.493 33.333 0.00 0.00 30.59 1.40
469 479 8.884323 AGTATGCTTTTATCATCCAGGAGATTA 58.116 33.333 0.00 0.00 30.59 1.75
470 480 7.753630 AGTATGCTTTTATCATCCAGGAGATT 58.246 34.615 0.00 0.00 30.59 2.40
471 481 7.327064 AGTATGCTTTTATCATCCAGGAGAT 57.673 36.000 0.00 1.14 34.66 2.75
472 482 6.753913 AGTATGCTTTTATCATCCAGGAGA 57.246 37.500 0.00 0.00 0.00 3.71
473 483 7.500227 TCAAAGTATGCTTTTATCATCCAGGAG 59.500 37.037 6.00 0.00 42.54 3.69
474 484 7.345691 TCAAAGTATGCTTTTATCATCCAGGA 58.654 34.615 6.00 0.00 42.54 3.86
475 485 7.572523 TCAAAGTATGCTTTTATCATCCAGG 57.427 36.000 6.00 0.00 42.54 4.45
476 486 9.064706 AGATCAAAGTATGCTTTTATCATCCAG 57.935 33.333 23.76 5.91 42.98 3.86
477 487 8.843262 CAGATCAAAGTATGCTTTTATCATCCA 58.157 33.333 23.76 0.00 42.98 3.41
478 488 8.844244 ACAGATCAAAGTATGCTTTTATCATCC 58.156 33.333 23.76 6.17 42.98 3.51
481 491 9.844790 CAAACAGATCAAAGTATGCTTTTATCA 57.155 29.630 23.76 5.29 42.98 2.15
482 492 9.846248 ACAAACAGATCAAAGTATGCTTTTATC 57.154 29.630 17.75 17.75 42.54 1.75
483 493 9.630098 CACAAACAGATCAAAGTATGCTTTTAT 57.370 29.630 6.00 4.36 42.54 1.40
484 494 8.629158 ACACAAACAGATCAAAGTATGCTTTTA 58.371 29.630 6.00 0.00 42.54 1.52
485 495 7.491682 ACACAAACAGATCAAAGTATGCTTTT 58.508 30.769 6.00 0.00 42.54 2.27
486 496 7.013655 AGACACAAACAGATCAAAGTATGCTTT 59.986 33.333 2.58 2.58 45.04 3.51
487 497 6.488006 AGACACAAACAGATCAAAGTATGCTT 59.512 34.615 0.00 0.00 36.30 3.91
488 498 6.000219 AGACACAAACAGATCAAAGTATGCT 59.000 36.000 0.00 0.00 0.00 3.79
489 499 6.246420 AGACACAAACAGATCAAAGTATGC 57.754 37.500 0.00 0.00 0.00 3.14
490 500 6.401474 CGGAGACACAAACAGATCAAAGTATG 60.401 42.308 0.00 0.00 0.00 2.39
491 501 5.639506 CGGAGACACAAACAGATCAAAGTAT 59.360 40.000 0.00 0.00 0.00 2.12
492 502 4.988540 CGGAGACACAAACAGATCAAAGTA 59.011 41.667 0.00 0.00 0.00 2.24
493 503 3.809832 CGGAGACACAAACAGATCAAAGT 59.190 43.478 0.00 0.00 0.00 2.66
494 504 3.364366 GCGGAGACACAAACAGATCAAAG 60.364 47.826 0.00 0.00 0.00 2.77
495 505 2.548057 GCGGAGACACAAACAGATCAAA 59.452 45.455 0.00 0.00 0.00 2.69
496 506 2.143122 GCGGAGACACAAACAGATCAA 58.857 47.619 0.00 0.00 0.00 2.57
497 507 1.344438 AGCGGAGACACAAACAGATCA 59.656 47.619 0.00 0.00 0.00 2.92
498 508 1.996191 GAGCGGAGACACAAACAGATC 59.004 52.381 0.00 0.00 0.00 2.75
499 509 1.620819 AGAGCGGAGACACAAACAGAT 59.379 47.619 0.00 0.00 0.00 2.90
500 510 1.040646 AGAGCGGAGACACAAACAGA 58.959 50.000 0.00 0.00 0.00 3.41
501 511 1.795286 GAAGAGCGGAGACACAAACAG 59.205 52.381 0.00 0.00 0.00 3.16
502 512 1.138069 TGAAGAGCGGAGACACAAACA 59.862 47.619 0.00 0.00 0.00 2.83
503 513 1.865865 TGAAGAGCGGAGACACAAAC 58.134 50.000 0.00 0.00 0.00 2.93
504 514 2.210116 GTTGAAGAGCGGAGACACAAA 58.790 47.619 0.00 0.00 0.00 2.83
505 515 1.138069 TGTTGAAGAGCGGAGACACAA 59.862 47.619 0.00 0.00 0.00 3.33
506 516 0.750249 TGTTGAAGAGCGGAGACACA 59.250 50.000 0.00 0.00 0.00 3.72
507 517 1.728971 CATGTTGAAGAGCGGAGACAC 59.271 52.381 0.00 0.00 0.00 3.67
508 518 1.941209 GCATGTTGAAGAGCGGAGACA 60.941 52.381 0.00 0.00 0.00 3.41
509 519 0.723981 GCATGTTGAAGAGCGGAGAC 59.276 55.000 0.00 0.00 0.00 3.36
510 520 0.610174 AGCATGTTGAAGAGCGGAGA 59.390 50.000 0.00 0.00 0.00 3.71
511 521 0.725686 CAGCATGTTGAAGAGCGGAG 59.274 55.000 2.97 0.00 0.00 4.63
512 522 0.321346 TCAGCATGTTGAAGAGCGGA 59.679 50.000 10.10 0.00 37.40 5.54
513 523 0.445436 GTCAGCATGTTGAAGAGCGG 59.555 55.000 14.30 0.00 37.40 5.52
514 524 1.128136 CTGTCAGCATGTTGAAGAGCG 59.872 52.381 14.30 0.00 37.40 5.03
515 525 1.135746 GCTGTCAGCATGTTGAAGAGC 60.136 52.381 20.16 21.43 41.89 4.09
516 526 1.467734 GGCTGTCAGCATGTTGAAGAG 59.532 52.381 25.68 13.42 44.75 2.85
517 527 1.202794 TGGCTGTCAGCATGTTGAAGA 60.203 47.619 25.68 3.27 44.75 2.87
518 528 1.068748 GTGGCTGTCAGCATGTTGAAG 60.069 52.381 25.68 13.80 44.75 3.02
519 529 0.953727 GTGGCTGTCAGCATGTTGAA 59.046 50.000 25.68 4.33 44.75 2.69
520 530 0.890542 GGTGGCTGTCAGCATGTTGA 60.891 55.000 25.68 8.32 44.75 3.18
521 531 1.582968 GGTGGCTGTCAGCATGTTG 59.417 57.895 25.68 2.65 44.75 3.33
522 532 4.085876 GGTGGCTGTCAGCATGTT 57.914 55.556 25.68 0.00 44.75 2.71
527 537 1.740025 GATAACTTGGTGGCTGTCAGC 59.260 52.381 16.93 16.93 43.68 4.26
528 538 2.744202 GTGATAACTTGGTGGCTGTCAG 59.256 50.000 0.00 0.00 0.00 3.51
529 539 2.371841 AGTGATAACTTGGTGGCTGTCA 59.628 45.455 0.00 0.00 0.00 3.58
530 540 3.003480 GAGTGATAACTTGGTGGCTGTC 58.997 50.000 0.00 0.00 0.00 3.51
531 541 2.639839 AGAGTGATAACTTGGTGGCTGT 59.360 45.455 0.00 0.00 0.00 4.40
532 542 3.340814 AGAGTGATAACTTGGTGGCTG 57.659 47.619 0.00 0.00 0.00 4.85
533 543 8.671987 ATATATAGAGTGATAACTTGGTGGCT 57.328 34.615 0.00 0.00 0.00 4.75
534 544 8.531982 TGATATATAGAGTGATAACTTGGTGGC 58.468 37.037 0.00 0.00 0.00 5.01
535 545 9.862371 GTGATATATAGAGTGATAACTTGGTGG 57.138 37.037 0.00 0.00 0.00 4.61
547 557 9.149225 GCAATCTTCCAAGTGATATATAGAGTG 57.851 37.037 0.00 0.00 31.76 3.51
548 558 9.099071 AGCAATCTTCCAAGTGATATATAGAGT 57.901 33.333 0.00 0.00 0.00 3.24
549 559 9.585099 GAGCAATCTTCCAAGTGATATATAGAG 57.415 37.037 0.00 0.00 0.00 2.43
550 560 8.535335 GGAGCAATCTTCCAAGTGATATATAGA 58.465 37.037 0.00 0.00 0.00 1.98
551 561 8.316946 TGGAGCAATCTTCCAAGTGATATATAG 58.683 37.037 0.00 0.00 0.00 1.31
552 562 8.206126 TGGAGCAATCTTCCAAGTGATATATA 57.794 34.615 0.00 0.00 0.00 0.86
553 563 7.083062 TGGAGCAATCTTCCAAGTGATATAT 57.917 36.000 0.00 0.00 0.00 0.86
554 564 6.499106 TGGAGCAATCTTCCAAGTGATATA 57.501 37.500 0.00 0.00 0.00 0.86
555 565 5.378230 TGGAGCAATCTTCCAAGTGATAT 57.622 39.130 0.00 0.00 0.00 1.63
556 566 4.842531 TGGAGCAATCTTCCAAGTGATA 57.157 40.909 0.00 0.00 0.00 2.15
557 567 3.726557 TGGAGCAATCTTCCAAGTGAT 57.273 42.857 0.00 0.00 0.00 3.06
558 568 3.726557 ATGGAGCAATCTTCCAAGTGA 57.273 42.857 0.00 0.00 37.07 3.41
559 569 3.508793 ACAATGGAGCAATCTTCCAAGTG 59.491 43.478 0.00 3.04 37.07 3.16
560 570 3.771216 ACAATGGAGCAATCTTCCAAGT 58.229 40.909 0.00 0.00 37.07 3.16
561 571 4.946157 ACTACAATGGAGCAATCTTCCAAG 59.054 41.667 0.00 0.00 37.07 3.61
562 572 4.701651 CACTACAATGGAGCAATCTTCCAA 59.298 41.667 0.00 0.00 37.07 3.53
563 573 4.264253 CACTACAATGGAGCAATCTTCCA 58.736 43.478 0.00 0.00 37.99 3.53
564 574 3.065925 GCACTACAATGGAGCAATCTTCC 59.934 47.826 0.00 0.00 0.00 3.46
565 575 3.944015 AGCACTACAATGGAGCAATCTTC 59.056 43.478 0.00 0.00 0.00 2.87
566 576 3.960571 AGCACTACAATGGAGCAATCTT 58.039 40.909 0.00 0.00 0.00 2.40
567 577 3.641434 AGCACTACAATGGAGCAATCT 57.359 42.857 0.00 0.00 0.00 2.40
568 578 4.635765 TGTTAGCACTACAATGGAGCAATC 59.364 41.667 0.00 0.00 0.00 2.67
569 579 4.588899 TGTTAGCACTACAATGGAGCAAT 58.411 39.130 0.00 0.00 0.00 3.56
570 580 4.014569 TGTTAGCACTACAATGGAGCAA 57.985 40.909 0.00 0.00 0.00 3.91
571 581 3.694043 TGTTAGCACTACAATGGAGCA 57.306 42.857 0.00 0.00 0.00 4.26
572 582 5.277538 GCTTATGTTAGCACTACAATGGAGC 60.278 44.000 0.00 0.00 40.89 4.70
573 583 5.237344 GGCTTATGTTAGCACTACAATGGAG 59.763 44.000 0.00 0.00 43.02 3.86
574 584 5.123227 GGCTTATGTTAGCACTACAATGGA 58.877 41.667 0.00 0.00 43.02 3.41
575 585 4.275936 GGGCTTATGTTAGCACTACAATGG 59.724 45.833 0.00 0.00 41.43 3.16
576 586 4.275936 GGGGCTTATGTTAGCACTACAATG 59.724 45.833 0.00 0.00 44.14 2.82
577 587 4.166144 AGGGGCTTATGTTAGCACTACAAT 59.834 41.667 0.00 0.00 44.14 2.71
578 588 3.521937 AGGGGCTTATGTTAGCACTACAA 59.478 43.478 0.00 0.00 44.14 2.41
579 589 3.112263 AGGGGCTTATGTTAGCACTACA 58.888 45.455 0.00 0.00 44.14 2.74
580 590 3.134081 TGAGGGGCTTATGTTAGCACTAC 59.866 47.826 0.00 0.00 44.14 2.73
581 591 3.134081 GTGAGGGGCTTATGTTAGCACTA 59.866 47.826 0.00 0.00 44.14 2.74
582 592 2.092914 GTGAGGGGCTTATGTTAGCACT 60.093 50.000 0.00 0.00 44.14 4.40
583 593 2.289565 GTGAGGGGCTTATGTTAGCAC 58.710 52.381 0.00 0.00 43.96 4.40
584 594 1.134521 CGTGAGGGGCTTATGTTAGCA 60.135 52.381 0.00 0.00 43.02 3.49
585 595 1.583054 CGTGAGGGGCTTATGTTAGC 58.417 55.000 0.00 0.00 40.48 3.09
599 609 5.460419 GTGTGAAATTCTAGCTATCCGTGAG 59.540 44.000 0.00 0.00 0.00 3.51
600 610 5.127194 AGTGTGAAATTCTAGCTATCCGTGA 59.873 40.000 0.00 0.00 0.00 4.35
601 611 5.233050 CAGTGTGAAATTCTAGCTATCCGTG 59.767 44.000 0.00 0.00 0.00 4.94
602 612 5.352284 CAGTGTGAAATTCTAGCTATCCGT 58.648 41.667 0.00 0.00 0.00 4.69
603 613 4.747108 CCAGTGTGAAATTCTAGCTATCCG 59.253 45.833 0.00 0.00 0.00 4.18
604 614 5.918608 TCCAGTGTGAAATTCTAGCTATCC 58.081 41.667 0.00 0.00 0.00 2.59
605 615 6.578023 ACTCCAGTGTGAAATTCTAGCTATC 58.422 40.000 0.00 0.00 0.00 2.08
606 616 6.552445 ACTCCAGTGTGAAATTCTAGCTAT 57.448 37.500 0.00 0.00 0.00 2.97
607 617 6.436218 TGTACTCCAGTGTGAAATTCTAGCTA 59.564 38.462 0.00 0.00 0.00 3.32
608 618 4.899352 ACTCCAGTGTGAAATTCTAGCT 57.101 40.909 0.00 0.00 0.00 3.32
609 619 5.479306 TGTACTCCAGTGTGAAATTCTAGC 58.521 41.667 0.00 0.00 0.00 3.42
610 620 7.323420 TGATGTACTCCAGTGTGAAATTCTAG 58.677 38.462 0.00 0.00 0.00 2.43
611 621 7.239763 TGATGTACTCCAGTGTGAAATTCTA 57.760 36.000 0.00 0.00 0.00 2.10
612 622 6.114187 TGATGTACTCCAGTGTGAAATTCT 57.886 37.500 0.00 0.00 0.00 2.40
613 623 6.595326 TGATGATGTACTCCAGTGTGAAATTC 59.405 38.462 0.00 0.00 0.00 2.17
614 624 6.372659 GTGATGATGTACTCCAGTGTGAAATT 59.627 38.462 0.00 0.00 0.00 1.82
615 625 5.877012 GTGATGATGTACTCCAGTGTGAAAT 59.123 40.000 0.00 0.00 0.00 2.17
616 626 5.221621 TGTGATGATGTACTCCAGTGTGAAA 60.222 40.000 0.00 0.00 0.00 2.69
617 627 4.283212 TGTGATGATGTACTCCAGTGTGAA 59.717 41.667 0.00 0.00 0.00 3.18
618 628 3.831911 TGTGATGATGTACTCCAGTGTGA 59.168 43.478 0.00 0.00 0.00 3.58
619 629 4.192429 TGTGATGATGTACTCCAGTGTG 57.808 45.455 0.00 0.00 0.00 3.82
620 630 4.467438 TCATGTGATGATGTACTCCAGTGT 59.533 41.667 0.00 0.00 33.59 3.55
621 631 5.014808 TCATGTGATGATGTACTCCAGTG 57.985 43.478 0.00 0.00 33.59 3.66
622 632 5.423290 TCTTCATGTGATGATGTACTCCAGT 59.577 40.000 0.00 0.00 39.39 4.00
623 633 5.910614 TCTTCATGTGATGATGTACTCCAG 58.089 41.667 0.00 0.00 39.39 3.86
624 634 5.937975 TCTTCATGTGATGATGTACTCCA 57.062 39.130 0.00 0.00 39.39 3.86
625 635 7.044181 TCTTTCTTCATGTGATGATGTACTCC 58.956 38.462 0.00 0.00 39.39 3.85
626 636 8.549548 CATCTTTCTTCATGTGATGATGTACTC 58.450 37.037 16.40 0.00 39.39 2.59
627 637 7.012138 GCATCTTTCTTCATGTGATGATGTACT 59.988 37.037 20.47 0.00 39.39 2.73
628 638 7.130917 GCATCTTTCTTCATGTGATGATGTAC 58.869 38.462 20.47 0.00 39.39 2.90
629 639 6.824704 TGCATCTTTCTTCATGTGATGATGTA 59.175 34.615 20.47 17.39 39.39 2.29
630 640 5.650703 TGCATCTTTCTTCATGTGATGATGT 59.349 36.000 20.47 0.00 39.39 3.06
631 641 6.131544 TGCATCTTTCTTCATGTGATGATG 57.868 37.500 18.20 18.20 39.39 3.07
632 642 6.321435 ACATGCATCTTTCTTCATGTGATGAT 59.679 34.615 0.00 0.00 45.25 2.45
633 643 5.650703 ACATGCATCTTTCTTCATGTGATGA 59.349 36.000 0.00 0.00 45.25 2.92
634 644 5.891451 ACATGCATCTTTCTTCATGTGATG 58.109 37.500 0.00 0.00 45.25 3.07
635 645 5.886474 AGACATGCATCTTTCTTCATGTGAT 59.114 36.000 10.88 0.00 46.45 3.06
636 646 5.123344 CAGACATGCATCTTTCTTCATGTGA 59.877 40.000 10.88 0.00 46.45 3.58
637 647 5.332707 CAGACATGCATCTTTCTTCATGTG 58.667 41.667 10.88 0.00 46.45 3.21
653 663 0.720027 CTTCAGCTCGTGCAGACATG 59.280 55.000 12.58 0.74 42.74 3.21
654 664 0.605083 TCTTCAGCTCGTGCAGACAT 59.395 50.000 12.58 0.00 42.74 3.06
655 665 0.605083 ATCTTCAGCTCGTGCAGACA 59.395 50.000 12.58 0.00 42.74 3.41
656 666 0.997932 CATCTTCAGCTCGTGCAGAC 59.002 55.000 12.58 0.00 42.74 3.51
657 667 0.890683 TCATCTTCAGCTCGTGCAGA 59.109 50.000 12.58 6.33 42.74 4.26
658 668 1.937278 ATCATCTTCAGCTCGTGCAG 58.063 50.000 12.58 3.63 42.74 4.41
659 669 2.391616 AATCATCTTCAGCTCGTGCA 57.608 45.000 12.58 0.00 42.74 4.57
660 670 2.285486 CGAAATCATCTTCAGCTCGTGC 60.285 50.000 0.07 0.07 40.05 5.34
661 671 2.285486 GCGAAATCATCTTCAGCTCGTG 60.285 50.000 0.00 0.00 0.00 4.35
662 672 1.929836 GCGAAATCATCTTCAGCTCGT 59.070 47.619 0.00 0.00 0.00 4.18
663 673 1.260033 GGCGAAATCATCTTCAGCTCG 59.740 52.381 0.00 0.00 0.00 5.03
664 674 1.601430 GGGCGAAATCATCTTCAGCTC 59.399 52.381 0.00 0.00 0.00 4.09
665 675 1.065199 TGGGCGAAATCATCTTCAGCT 60.065 47.619 0.00 0.00 0.00 4.24
666 676 1.382522 TGGGCGAAATCATCTTCAGC 58.617 50.000 0.00 0.00 0.00 4.26
667 677 4.999311 TCATATGGGCGAAATCATCTTCAG 59.001 41.667 2.13 0.00 0.00 3.02
668 678 4.971939 TCATATGGGCGAAATCATCTTCA 58.028 39.130 2.13 0.00 0.00 3.02
669 679 5.879223 AGATCATATGGGCGAAATCATCTTC 59.121 40.000 2.13 0.00 0.00 2.87
670 680 5.813383 AGATCATATGGGCGAAATCATCTT 58.187 37.500 2.13 0.00 0.00 2.40
671 681 5.426504 GAGATCATATGGGCGAAATCATCT 58.573 41.667 2.13 0.33 0.00 2.90
672 682 4.269603 CGAGATCATATGGGCGAAATCATC 59.730 45.833 2.13 0.00 0.00 2.92
673 683 4.186926 CGAGATCATATGGGCGAAATCAT 58.813 43.478 2.13 0.00 0.00 2.45
674 684 3.588955 CGAGATCATATGGGCGAAATCA 58.411 45.455 2.13 0.00 0.00 2.57
675 685 2.349886 GCGAGATCATATGGGCGAAATC 59.650 50.000 2.13 0.00 0.00 2.17
676 686 2.027745 AGCGAGATCATATGGGCGAAAT 60.028 45.455 2.13 0.00 0.00 2.17
677 687 1.344438 AGCGAGATCATATGGGCGAAA 59.656 47.619 2.13 0.00 0.00 3.46
678 688 0.969149 AGCGAGATCATATGGGCGAA 59.031 50.000 2.13 0.00 0.00 4.70
679 689 0.244721 CAGCGAGATCATATGGGCGA 59.755 55.000 2.13 0.00 0.00 5.54
680 690 0.037882 ACAGCGAGATCATATGGGCG 60.038 55.000 2.13 3.31 0.00 6.13
681 691 2.886081 CTACAGCGAGATCATATGGGC 58.114 52.381 2.13 0.00 0.00 5.36
682 692 2.232208 TGCTACAGCGAGATCATATGGG 59.768 50.000 2.13 0.00 45.83 4.00
683 693 3.582714 TGCTACAGCGAGATCATATGG 57.417 47.619 2.13 0.00 45.83 2.74
684 694 3.306434 GCATGCTACAGCGAGATCATATG 59.694 47.826 11.37 0.00 45.83 1.78
685 695 3.519579 GCATGCTACAGCGAGATCATAT 58.480 45.455 11.37 0.00 45.83 1.78
686 696 2.353109 GGCATGCTACAGCGAGATCATA 60.353 50.000 18.92 0.00 45.83 2.15
687 697 1.607509 GGCATGCTACAGCGAGATCAT 60.608 52.381 18.92 0.00 45.83 2.45
688 698 0.249615 GGCATGCTACAGCGAGATCA 60.250 55.000 18.92 0.00 45.83 2.92
689 699 0.249615 TGGCATGCTACAGCGAGATC 60.250 55.000 18.92 0.00 45.83 2.75
690 700 0.249784 CTGGCATGCTACAGCGAGAT 60.250 55.000 18.92 0.00 45.83 2.75
691 701 1.142531 CTGGCATGCTACAGCGAGA 59.857 57.895 18.92 0.00 45.83 4.04
692 702 0.742281 AACTGGCATGCTACAGCGAG 60.742 55.000 18.92 0.45 45.83 5.03
693 703 0.740868 GAACTGGCATGCTACAGCGA 60.741 55.000 18.92 0.00 45.83 4.93
694 704 0.742281 AGAACTGGCATGCTACAGCG 60.742 55.000 18.92 1.67 45.83 5.18
695 705 1.399791 GAAGAACTGGCATGCTACAGC 59.600 52.381 18.92 5.66 38.25 4.40
696 706 2.983229 AGAAGAACTGGCATGCTACAG 58.017 47.619 18.92 18.89 40.48 2.74
697 707 4.406972 AGATAGAAGAACTGGCATGCTACA 59.593 41.667 18.92 7.08 0.00 2.74
698 708 4.954875 AGATAGAAGAACTGGCATGCTAC 58.045 43.478 18.92 1.78 0.00 3.58
699 709 6.463049 GGTTAGATAGAAGAACTGGCATGCTA 60.463 42.308 18.92 11.28 0.00 3.49
700 710 5.363939 GTTAGATAGAAGAACTGGCATGCT 58.636 41.667 18.92 0.00 0.00 3.79
701 711 4.513318 GGTTAGATAGAAGAACTGGCATGC 59.487 45.833 9.90 9.90 0.00 4.06
702 712 5.757320 CAGGTTAGATAGAAGAACTGGCATG 59.243 44.000 0.00 0.00 0.00 4.06
703 713 5.686124 GCAGGTTAGATAGAAGAACTGGCAT 60.686 44.000 0.00 0.00 0.00 4.40
704 714 4.383118 GCAGGTTAGATAGAAGAACTGGCA 60.383 45.833 0.00 0.00 0.00 4.92
705 715 4.123506 GCAGGTTAGATAGAAGAACTGGC 58.876 47.826 0.00 0.00 0.00 4.85
706 716 5.127845 TCAGCAGGTTAGATAGAAGAACTGG 59.872 44.000 0.00 0.00 0.00 4.00
707 717 6.214191 TCAGCAGGTTAGATAGAAGAACTG 57.786 41.667 0.00 0.00 0.00 3.16
708 718 6.838612 AGATCAGCAGGTTAGATAGAAGAACT 59.161 38.462 0.00 0.00 0.00 3.01
709 719 7.049799 AGATCAGCAGGTTAGATAGAAGAAC 57.950 40.000 0.00 0.00 0.00 3.01
710 720 6.266558 GGAGATCAGCAGGTTAGATAGAAGAA 59.733 42.308 0.00 0.00 0.00 2.52
847 882 5.442779 GCCGACGTTGAAGCAAATTATTTTC 60.443 40.000 3.74 0.00 0.00 2.29
929 965 8.987890 GCTGGTTTTATAATCTTGAAGCAAAAA 58.012 29.630 0.00 0.00 0.00 1.94
932 968 7.176515 TCTGCTGGTTTTATAATCTTGAAGCAA 59.823 33.333 0.00 0.00 36.59 3.91
934 970 6.969473 GTCTGCTGGTTTTATAATCTTGAAGC 59.031 38.462 0.00 0.00 0.00 3.86
935 971 8.044060 TGTCTGCTGGTTTTATAATCTTGAAG 57.956 34.615 0.00 0.00 0.00 3.02
936 972 7.994425 TGTCTGCTGGTTTTATAATCTTGAA 57.006 32.000 0.00 0.00 0.00 2.69
1557 1629 5.068636 CCCTCAAAATGTGCATCTAGCTAT 58.931 41.667 0.00 0.00 45.94 2.97
1578 1650 9.719355 AAATCAATCTAACAAAATTAACACCCC 57.281 29.630 0.00 0.00 0.00 4.95
1640 1712 5.013079 TCCAATCTTATGTCGCCCAGATAAT 59.987 40.000 0.00 0.00 0.00 1.28
1643 1715 2.705658 TCCAATCTTATGTCGCCCAGAT 59.294 45.455 0.00 0.00 0.00 2.90
1695 1767 5.711506 TCAGGACGTCCACAAAATACTACTA 59.288 40.000 35.00 1.85 38.89 1.82
1700 1783 3.374058 CCATCAGGACGTCCACAAAATAC 59.626 47.826 35.00 5.95 38.89 1.89
1701 1784 3.008594 ACCATCAGGACGTCCACAAAATA 59.991 43.478 35.00 12.82 38.89 1.40
1702 1785 2.224769 ACCATCAGGACGTCCACAAAAT 60.225 45.455 35.00 17.38 38.89 1.82
1703 1786 1.142060 ACCATCAGGACGTCCACAAAA 59.858 47.619 35.00 15.93 38.89 2.44
1804 1892 6.322456 AGAAGGTTTTCAGAAGAAGGGAAAAG 59.678 38.462 0.00 0.00 40.13 2.27
1808 1896 5.388599 AAGAAGGTTTTCAGAAGAAGGGA 57.611 39.130 0.00 0.00 35.70 4.20
1809 1897 6.299922 AGTAAGAAGGTTTTCAGAAGAAGGG 58.700 40.000 0.00 0.00 35.70 3.95
1810 1898 7.931948 TGTAGTAAGAAGGTTTTCAGAAGAAGG 59.068 37.037 0.00 0.00 35.70 3.46
1878 1966 1.339055 CCTCTTTCAGATGGTTCGGCA 60.339 52.381 0.00 0.00 0.00 5.69
1899 1987 6.513393 GCAACATGTATGACACTTATAAGGGC 60.513 42.308 14.86 8.23 30.73 5.19
1956 2044 6.530534 ACATCCTTCTGTCGTTAAACTTATCG 59.469 38.462 0.00 0.00 0.00 2.92
1957 2045 7.544566 TGACATCCTTCTGTCGTTAAACTTATC 59.455 37.037 0.33 0.00 46.89 1.75
1968 2057 4.330074 GGTAATGTTGACATCCTTCTGTCG 59.670 45.833 0.00 0.00 46.89 4.35
2002 2091 6.919115 GCTTGCCATTTGAAAATGAAATTGTT 59.081 30.769 15.68 0.00 46.72 2.83
2052 2141 6.237463 GCCTTGACGTTTTTGACAACTAAAAG 60.237 38.462 0.00 0.00 33.23 2.27
2063 2171 1.676006 ACTCTGGCCTTGACGTTTTTG 59.324 47.619 3.32 0.00 0.00 2.44
2136 2301 6.068010 TCCCTTCACATAATGACACACTTTT 58.932 36.000 0.00 0.00 36.92 2.27
2139 2304 4.908601 TCCCTTCACATAATGACACACT 57.091 40.909 0.00 0.00 36.92 3.55
2341 2681 7.456269 TGGTCAAAGGGGTTAATTAATGATTGT 59.544 33.333 0.31 0.00 0.00 2.71
2423 2772 8.347035 GCGGTATGGTTTAAGCAAATTATAAGA 58.653 33.333 0.00 0.00 0.00 2.10
2467 2816 1.236616 TTGAGCCATTGGTGCGAGTG 61.237 55.000 4.26 0.00 0.00 3.51
2470 2819 0.527113 CAATTGAGCCATTGGTGCGA 59.473 50.000 0.00 0.00 0.00 5.10
2512 2861 1.608717 CCACGGTGGAGGAGGAGAAG 61.609 65.000 22.77 0.00 40.96 2.85
2514 2863 2.037367 CCACGGTGGAGGAGGAGA 59.963 66.667 22.77 0.00 40.96 3.71
2516 2865 2.603473 CACCACGGTGGAGGAGGA 60.603 66.667 32.72 0.00 40.96 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.