Multiple sequence alignment - TraesCS7B01G236200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G236200 chr7B 100.000 2582 0 0 1 2582 440241318 440243899 0.000000e+00 4769.0
1 TraesCS7B01G236200 chr7B 82.828 594 77 14 660 1235 440214632 440215218 2.290000e-140 508.0
2 TraesCS7B01G236200 chr7B 88.506 348 40 0 1264 1611 440200399 440200746 3.070000e-114 422.0
3 TraesCS7B01G236200 chr7B 91.844 282 23 0 1308 1589 440215342 440215623 6.700000e-106 394.0
4 TraesCS7B01G236200 chr7B 89.474 285 30 0 1297 1581 440332360 440332644 6.790000e-96 361.0
5 TraesCS7B01G236200 chr7B 84.980 253 38 0 1297 1549 440814133 440814385 9.170000e-65 257.0
6 TraesCS7B01G236200 chr7B 84.496 258 40 0 1324 1581 440187496 440187753 3.300000e-64 255.0
7 TraesCS7B01G236200 chr7B 91.463 164 13 1 2305 2468 103560082 103560244 9.300000e-55 224.0
8 TraesCS7B01G236200 chr7D 88.830 1701 103 20 3 1666 423411193 423412843 0.000000e+00 2008.0
9 TraesCS7B01G236200 chr7D 87.623 509 57 5 1801 2308 11121598 11122101 1.030000e-163 586.0
10 TraesCS7B01G236200 chr7D 81.926 592 77 17 660 1235 423403816 423404393 8.360000e-130 473.0
11 TraesCS7B01G236200 chr7D 90.252 318 31 0 1264 1581 423344542 423344859 1.430000e-112 416.0
12 TraesCS7B01G236200 chr7D 90.614 277 23 1 1312 1588 423404527 423404800 5.250000e-97 364.0
13 TraesCS7B01G236200 chr7D 88.525 244 28 0 1308 1551 423551635 423551878 1.940000e-76 296.0
14 TraesCS7B01G236200 chr7D 91.463 164 13 1 2305 2468 321045624 321045462 9.300000e-55 224.0
15 TraesCS7B01G236200 chr7D 75.369 203 40 9 1337 1534 422952673 422952870 3.540000e-14 89.8
16 TraesCS7B01G236200 chr7D 85.714 56 6 2 622 676 582230652 582230598 9.980000e-05 58.4
17 TraesCS7B01G236200 chr7A 91.054 1006 67 8 701 1697 509725208 509724217 0.000000e+00 1338.0
18 TraesCS7B01G236200 chr7A 88.336 703 42 10 1 703 509727046 509726384 0.000000e+00 808.0
19 TraesCS7B01G236200 chr7A 85.745 463 58 3 1801 2261 560946374 560945918 1.390000e-132 483.0
20 TraesCS7B01G236200 chr7A 82.125 593 74 15 660 1235 509760936 509760359 1.800000e-131 479.0
21 TraesCS7B01G236200 chr7A 89.655 348 36 0 1264 1611 509814829 509814482 6.560000e-121 444.0
22 TraesCS7B01G236200 chr7A 90.520 327 28 2 1311 1637 509760226 509759903 1.840000e-116 429.0
23 TraesCS7B01G236200 chr7A 97.368 38 1 0 623 660 640088530 640088567 5.960000e-07 65.8
24 TraesCS7B01G236200 chr7A 87.037 54 4 3 613 664 39924570 39924518 9.980000e-05 58.4
25 TraesCS7B01G236200 chr3D 84.418 661 58 8 1 661 581194998 581195613 2.200000e-170 608.0
26 TraesCS7B01G236200 chr3D 90.533 169 13 3 2302 2470 308790749 308790584 1.200000e-53 220.0
27 TraesCS7B01G236200 chrUn 88.105 496 54 3 1814 2308 47316491 47316982 3.700000e-163 584.0
28 TraesCS7B01G236200 chrUn 87.903 496 55 3 1814 2308 47287529 47287038 1.720000e-161 579.0
29 TraesCS7B01G236200 chrUn 89.130 460 41 8 1851 2307 331269419 331268966 4.820000e-157 564.0
30 TraesCS7B01G236200 chrUn 89.130 460 41 8 1851 2307 364132540 364132087 4.820000e-157 564.0
31 TraesCS7B01G236200 chr4B 89.348 460 40 9 1851 2307 7519956 7520409 1.040000e-158 569.0
32 TraesCS7B01G236200 chr4D 87.879 462 47 3 1801 2261 509367933 509368386 3.780000e-148 534.0
33 TraesCS7B01G236200 chr4D 90.909 165 15 0 2305 2469 17069431 17069267 3.340000e-54 222.0
34 TraesCS7B01G236200 chr4D 87.755 49 4 2 623 671 391835693 391835739 3.590000e-04 56.5
35 TraesCS7B01G236200 chr3A 87.186 398 45 3 1866 2261 712555394 712555001 5.070000e-122 448.0
36 TraesCS7B01G236200 chr3A 94.872 39 2 0 623 661 724659865 724659903 7.710000e-06 62.1
37 TraesCS7B01G236200 chr6D 89.944 179 17 1 2304 2482 446916534 446916711 2.000000e-56 230.0
38 TraesCS7B01G236200 chr6B 91.463 164 14 0 2305 2468 620698827 620698990 2.590000e-55 226.0
39 TraesCS7B01G236200 chr6B 92.857 42 2 1 622 662 35231502 35231461 2.770000e-05 60.2
40 TraesCS7B01G236200 chr3B 90.476 168 16 0 2304 2471 700239299 700239132 3.340000e-54 222.0
41 TraesCS7B01G236200 chr3B 90.058 171 15 2 2302 2472 771625829 771625997 1.200000e-53 220.0
42 TraesCS7B01G236200 chr2B 90.533 169 15 1 2305 2472 711322843 711323011 3.340000e-54 222.0
43 TraesCS7B01G236200 chr2B 82.895 76 8 4 587 661 720909158 720909229 2.140000e-06 63.9
44 TraesCS7B01G236200 chr2B 89.796 49 5 0 613 661 788923827 788923875 2.140000e-06 63.9
45 TraesCS7B01G236200 chr5B 92.683 41 2 1 621 660 2521626 2521666 9.980000e-05 58.4
46 TraesCS7B01G236200 chr1B 92.105 38 3 0 623 660 507059735 507059698 1.000000e-03 54.7
47 TraesCS7B01G236200 chr1B 92.105 38 3 0 623 660 507105065 507105028 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G236200 chr7B 440241318 440243899 2581 False 4769.0 4769 100.0000 1 2582 1 chr7B.!!$F4 2581
1 TraesCS7B01G236200 chr7B 440214632 440215623 991 False 451.0 508 87.3360 660 1589 2 chr7B.!!$F7 929
2 TraesCS7B01G236200 chr7D 423411193 423412843 1650 False 2008.0 2008 88.8300 3 1666 1 chr7D.!!$F4 1663
3 TraesCS7B01G236200 chr7D 11121598 11122101 503 False 586.0 586 87.6230 1801 2308 1 chr7D.!!$F1 507
4 TraesCS7B01G236200 chr7D 423403816 423404800 984 False 418.5 473 86.2700 660 1588 2 chr7D.!!$F6 928
5 TraesCS7B01G236200 chr7A 509724217 509727046 2829 True 1073.0 1338 89.6950 1 1697 2 chr7A.!!$R4 1696
6 TraesCS7B01G236200 chr7A 509759903 509760936 1033 True 454.0 479 86.3225 660 1637 2 chr7A.!!$R5 977
7 TraesCS7B01G236200 chr3D 581194998 581195613 615 False 608.0 608 84.4180 1 661 1 chr3D.!!$F1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
720 1900 0.530744 TTCGTTGCTATCTCTGGCGT 59.469 50.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 3137 0.033504 TCTTGGCTCCGGCGATTATC 59.966 55.0 9.3 0.0 39.81 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 6.569179 TTAGAATTGTACCCAGAAAACAGC 57.431 37.500 0.00 0.00 0.00 4.40
162 163 7.823149 ATCAAGCAATCAGATTTAAAGCAAC 57.177 32.000 6.19 0.00 0.00 4.17
218 219 4.642429 ACAGTAGTGCTTCCAACTAAAGG 58.358 43.478 0.00 0.00 0.00 3.11
242 243 5.210715 CCAAAAATGCTTCTATCGATCTGC 58.789 41.667 0.00 3.02 0.00 4.26
449 450 6.922957 TGTTTTGTCAAATTCCTAACATCAGC 59.077 34.615 0.00 0.00 0.00 4.26
450 451 6.899393 TTTGTCAAATTCCTAACATCAGCT 57.101 33.333 0.00 0.00 0.00 4.24
451 452 5.885230 TGTCAAATTCCTAACATCAGCTG 57.115 39.130 7.63 7.63 0.00 4.24
452 453 5.559770 TGTCAAATTCCTAACATCAGCTGA 58.440 37.500 20.79 20.79 0.00 4.26
453 454 5.645067 TGTCAAATTCCTAACATCAGCTGAG 59.355 40.000 22.96 15.84 0.00 3.35
454 455 5.877012 GTCAAATTCCTAACATCAGCTGAGA 59.123 40.000 22.96 9.76 0.00 3.27
455 456 6.541641 GTCAAATTCCTAACATCAGCTGAGAT 59.458 38.462 22.96 12.68 0.00 2.75
456 457 7.066766 GTCAAATTCCTAACATCAGCTGAGATT 59.933 37.037 22.96 19.43 0.00 2.40
457 458 6.939132 AATTCCTAACATCAGCTGAGATTG 57.061 37.500 22.96 17.58 0.00 2.67
458 459 3.801698 TCCTAACATCAGCTGAGATTGC 58.198 45.455 22.96 0.00 0.00 3.56
459 460 2.877168 CCTAACATCAGCTGAGATTGCC 59.123 50.000 22.96 0.00 0.00 4.52
460 461 2.502142 AACATCAGCTGAGATTGCCA 57.498 45.000 22.96 0.00 0.00 4.92
461 462 2.502142 ACATCAGCTGAGATTGCCAA 57.498 45.000 22.96 0.00 0.00 4.52
462 463 2.366533 ACATCAGCTGAGATTGCCAAG 58.633 47.619 22.96 5.62 0.00 3.61
463 464 2.026542 ACATCAGCTGAGATTGCCAAGA 60.027 45.455 22.96 0.00 0.00 3.02
464 465 3.215151 CATCAGCTGAGATTGCCAAGAT 58.785 45.455 22.96 0.00 0.00 2.40
465 466 4.141551 ACATCAGCTGAGATTGCCAAGATA 60.142 41.667 22.96 0.00 0.00 1.98
466 467 4.492494 TCAGCTGAGATTGCCAAGATAA 57.508 40.909 13.74 0.00 0.00 1.75
467 468 4.449131 TCAGCTGAGATTGCCAAGATAAG 58.551 43.478 13.74 0.00 0.00 1.73
468 469 4.162888 TCAGCTGAGATTGCCAAGATAAGA 59.837 41.667 13.74 0.00 0.00 2.10
469 470 4.880120 CAGCTGAGATTGCCAAGATAAGAA 59.120 41.667 8.42 0.00 0.00 2.52
470 471 5.356190 CAGCTGAGATTGCCAAGATAAGAAA 59.644 40.000 8.42 0.00 0.00 2.52
471 472 5.948162 AGCTGAGATTGCCAAGATAAGAAAA 59.052 36.000 0.00 0.00 0.00 2.29
472 473 6.435277 AGCTGAGATTGCCAAGATAAGAAAAA 59.565 34.615 0.00 0.00 0.00 1.94
576 578 9.755064 GGAAAATATTAATACATCATTCGACCG 57.245 33.333 0.00 0.00 0.00 4.79
642 644 2.051804 ATCTAGCCGCGCAAATGCAC 62.052 55.000 8.75 0.00 42.21 4.57
703 1883 4.593956 AGTGATGATCCCAACTTTCCTTC 58.406 43.478 0.00 0.00 0.00 3.46
720 1900 0.530744 TTCGTTGCTATCTCTGGCGT 59.469 50.000 0.00 0.00 0.00 5.68
752 1933 4.035208 CCGTGGCAATGTAACCTTATCTTC 59.965 45.833 0.00 0.00 0.00 2.87
778 1964 2.096174 GTGGGTTGTTTATCGCGCATAA 59.904 45.455 8.75 8.15 0.00 1.90
849 2036 5.812652 GCATTTGGCAATAAATCACCATTG 58.187 37.500 0.00 0.00 43.97 2.82
909 2096 3.362706 TGCTAGTCTCCGTTAATCCACT 58.637 45.455 0.00 0.00 0.00 4.00
967 2167 4.022416 AGCCTGCAAACAATTCGTCATTAA 60.022 37.500 0.00 0.00 0.00 1.40
1002 2228 1.401931 GCAGTAGCAGTTGCACCAATG 60.402 52.381 6.90 2.27 45.16 2.82
1025 2262 1.156736 CCACCATCAACGAAGTCCAC 58.843 55.000 0.00 0.00 45.00 4.02
1098 2341 1.678598 AATTCCCGGCGATACGTCCA 61.679 55.000 9.30 0.00 0.00 4.02
1105 2348 1.469703 CGGCGATACGTCCATGGTATA 59.530 52.381 12.58 3.25 31.01 1.47
1195 2444 2.089201 TCTGCATTCTCGGAGTCGTTA 58.911 47.619 4.69 0.00 37.69 3.18
1212 2461 2.089201 GTTATAAAGGGTTGCCGCAGT 58.911 47.619 0.00 0.00 0.00 4.40
1236 2485 0.108424 AATCTCACGCTGAGGCAGAC 60.108 55.000 12.89 0.00 44.39 3.51
1295 2600 2.892425 CCGGCAACTCGATGAGGC 60.892 66.667 0.00 0.00 33.35 4.70
1330 2656 4.729856 GCGCTACCAACCCGACGT 62.730 66.667 0.00 0.00 0.00 4.34
1358 2684 0.601841 CCGGCGTTCAAGTACAACCT 60.602 55.000 6.01 0.00 0.00 3.50
1365 2691 2.798847 GTTCAAGTACAACCTGTCCGTC 59.201 50.000 0.00 0.00 0.00 4.79
1401 2727 3.077556 GGAGGAGAGGAAGCGGCA 61.078 66.667 1.45 0.00 0.00 5.69
1434 2760 2.357517 CTCGGCGTGTTCCAGCTT 60.358 61.111 6.85 0.00 0.00 3.74
1443 2769 2.858476 TTCCAGCTTGGGGAGGCA 60.858 61.111 2.86 0.00 38.32 4.75
1527 2853 2.029073 CACTCGACGTGCCCACTT 59.971 61.111 0.00 0.00 36.72 3.16
1612 2938 1.709147 GCGAGAGGCTTACGTACGGA 61.709 60.000 21.06 8.59 39.11 4.69
1638 2966 4.992951 ACGGTGAAGATTTGGTAAGTGTAC 59.007 41.667 0.00 0.00 0.00 2.90
1692 3020 3.473923 CAACCTTGCCTGTCCATTTTT 57.526 42.857 0.00 0.00 0.00 1.94
1759 3087 9.803315 GAGAATAGGTATTTTTGGTTTGATTCC 57.197 33.333 0.00 0.00 0.00 3.01
1760 3088 8.758829 AGAATAGGTATTTTTGGTTTGATTCCC 58.241 33.333 0.00 0.00 0.00 3.97
1761 3089 5.755409 AGGTATTTTTGGTTTGATTCCCC 57.245 39.130 0.00 0.00 0.00 4.81
1762 3090 5.411493 AGGTATTTTTGGTTTGATTCCCCT 58.589 37.500 0.00 0.00 0.00 4.79
1763 3091 5.849475 AGGTATTTTTGGTTTGATTCCCCTT 59.151 36.000 0.00 0.00 0.00 3.95
1764 3092 5.937540 GGTATTTTTGGTTTGATTCCCCTTG 59.062 40.000 0.00 0.00 0.00 3.61
1765 3093 3.483808 TTTTGGTTTGATTCCCCTTGC 57.516 42.857 0.00 0.00 0.00 4.01
1766 3094 2.397044 TTGGTTTGATTCCCCTTGCT 57.603 45.000 0.00 0.00 0.00 3.91
1767 3095 2.397044 TGGTTTGATTCCCCTTGCTT 57.603 45.000 0.00 0.00 0.00 3.91
1768 3096 2.247358 TGGTTTGATTCCCCTTGCTTC 58.753 47.619 0.00 0.00 0.00 3.86
1769 3097 1.202348 GGTTTGATTCCCCTTGCTTCG 59.798 52.381 0.00 0.00 0.00 3.79
1770 3098 0.887933 TTTGATTCCCCTTGCTTCGC 59.112 50.000 0.00 0.00 0.00 4.70
1771 3099 0.038166 TTGATTCCCCTTGCTTCGCT 59.962 50.000 0.00 0.00 0.00 4.93
1772 3100 0.392998 TGATTCCCCTTGCTTCGCTC 60.393 55.000 0.00 0.00 0.00 5.03
1773 3101 1.432270 GATTCCCCTTGCTTCGCTCG 61.432 60.000 0.00 0.00 0.00 5.03
1774 3102 2.185310 ATTCCCCTTGCTTCGCTCGT 62.185 55.000 0.00 0.00 0.00 4.18
1775 3103 2.781595 TTCCCCTTGCTTCGCTCGTC 62.782 60.000 0.00 0.00 0.00 4.20
1776 3104 2.262915 CCCTTGCTTCGCTCGTCT 59.737 61.111 0.00 0.00 0.00 4.18
1777 3105 1.374758 CCCTTGCTTCGCTCGTCTT 60.375 57.895 0.00 0.00 0.00 3.01
1778 3106 0.108804 CCCTTGCTTCGCTCGTCTTA 60.109 55.000 0.00 0.00 0.00 2.10
1779 3107 1.671850 CCCTTGCTTCGCTCGTCTTAA 60.672 52.381 0.00 0.00 0.00 1.85
1780 3108 1.656095 CCTTGCTTCGCTCGTCTTAAG 59.344 52.381 0.00 0.00 0.00 1.85
1781 3109 1.656095 CTTGCTTCGCTCGTCTTAAGG 59.344 52.381 1.85 0.00 0.00 2.69
1782 3110 0.885879 TGCTTCGCTCGTCTTAAGGA 59.114 50.000 1.85 0.00 0.00 3.36
1783 3111 1.476891 TGCTTCGCTCGTCTTAAGGAT 59.523 47.619 1.85 0.00 0.00 3.24
1784 3112 2.094182 TGCTTCGCTCGTCTTAAGGATT 60.094 45.455 1.85 0.00 0.00 3.01
1785 3113 2.930682 GCTTCGCTCGTCTTAAGGATTT 59.069 45.455 1.85 0.00 0.00 2.17
1786 3114 3.371285 GCTTCGCTCGTCTTAAGGATTTT 59.629 43.478 1.85 0.00 0.00 1.82
1787 3115 4.142881 GCTTCGCTCGTCTTAAGGATTTTT 60.143 41.667 1.85 0.00 0.00 1.94
1788 3116 5.063060 GCTTCGCTCGTCTTAAGGATTTTTA 59.937 40.000 1.85 0.00 0.00 1.52
1789 3117 6.399204 TTCGCTCGTCTTAAGGATTTTTAC 57.601 37.500 1.85 0.00 0.00 2.01
1790 3118 4.560035 TCGCTCGTCTTAAGGATTTTTACG 59.440 41.667 1.85 3.54 0.00 3.18
1791 3119 4.325472 CGCTCGTCTTAAGGATTTTTACGT 59.675 41.667 1.85 0.00 0.00 3.57
1792 3120 5.512788 CGCTCGTCTTAAGGATTTTTACGTA 59.487 40.000 1.85 0.00 0.00 3.57
1793 3121 6.505420 CGCTCGTCTTAAGGATTTTTACGTAC 60.505 42.308 1.85 0.37 0.00 3.67
1794 3122 6.505420 GCTCGTCTTAAGGATTTTTACGTACG 60.505 42.308 15.01 15.01 0.00 3.67
1795 3123 6.607689 TCGTCTTAAGGATTTTTACGTACGA 58.392 36.000 24.41 2.43 32.71 3.43
1796 3124 6.523201 TCGTCTTAAGGATTTTTACGTACGAC 59.477 38.462 24.41 2.30 30.46 4.34
1797 3125 6.524586 CGTCTTAAGGATTTTTACGTACGACT 59.475 38.462 24.41 2.35 0.00 4.18
1798 3126 7.692291 CGTCTTAAGGATTTTTACGTACGACTA 59.308 37.037 24.41 1.17 0.00 2.59
1799 3127 9.508567 GTCTTAAGGATTTTTACGTACGACTAT 57.491 33.333 24.41 7.49 0.00 2.12
1819 3147 7.409449 CGACTATGACTAAAAAGATAATCGCCG 60.409 40.741 0.00 0.00 0.00 6.46
1820 3148 5.924475 ATGACTAAAAAGATAATCGCCGG 57.076 39.130 0.00 0.00 0.00 6.13
1822 3150 5.047847 TGACTAAAAAGATAATCGCCGGAG 58.952 41.667 5.05 0.00 0.00 4.63
1826 3154 0.468226 AAGATAATCGCCGGAGCCAA 59.532 50.000 5.05 0.00 34.57 4.52
1831 3159 2.859273 AATCGCCGGAGCCAAGAGTG 62.859 60.000 5.05 0.00 34.57 3.51
1853 3181 4.142249 TGGAACACACCACATATACGAGAG 60.142 45.833 0.00 0.00 34.77 3.20
1857 3185 4.645136 ACACACCACATATACGAGAGACAT 59.355 41.667 0.00 0.00 0.00 3.06
1860 3188 4.278419 CACCACATATACGAGAGACATCCA 59.722 45.833 0.00 0.00 0.00 3.41
1872 3200 1.228862 ACATCCAAGGGGTTGCCAC 60.229 57.895 0.00 0.00 37.39 5.01
1885 3213 2.674380 GCCACCCAGCCAGACAAG 60.674 66.667 0.00 0.00 0.00 3.16
1890 3218 1.064906 CACCCAGCCAGACAAGATGAT 60.065 52.381 0.00 0.00 0.00 2.45
1891 3219 1.064906 ACCCAGCCAGACAAGATGATG 60.065 52.381 0.00 0.00 0.00 3.07
1892 3220 1.022735 CCAGCCAGACAAGATGATGC 58.977 55.000 0.00 0.00 0.00 3.91
1945 3274 5.749596 TTTGTTATCTGTGACACTGGTTG 57.250 39.130 12.00 0.00 0.00 3.77
1951 3280 2.766263 TCTGTGACACTGGTTGAAGAGT 59.234 45.455 12.00 0.00 0.00 3.24
1972 3301 3.267974 GGCAAAGTCGAAGCCCAG 58.732 61.111 7.91 0.00 42.58 4.45
1975 3304 1.600636 CAAAGTCGAAGCCCAGGCA 60.601 57.895 12.03 0.00 44.88 4.75
1976 3305 1.302832 AAAGTCGAAGCCCAGGCAG 60.303 57.895 12.03 1.95 44.88 4.85
1979 3308 3.706373 TCGAAGCCCAGGCAGGAC 61.706 66.667 12.03 0.00 44.88 3.85
1990 3319 1.004044 CAGGCAGGACTGAGTTTCCAT 59.996 52.381 3.00 0.00 40.97 3.41
2007 3336 3.164610 ATGTTGCTGGGTTGGGCCT 62.165 57.895 4.53 0.00 37.43 5.19
2008 3337 2.524148 GTTGCTGGGTTGGGCCTT 60.524 61.111 4.53 0.00 37.43 4.35
2009 3338 2.140138 GTTGCTGGGTTGGGCCTTT 61.140 57.895 4.53 0.00 37.43 3.11
2036 3365 2.241171 GGTTCCTCCCGTTGTTTCG 58.759 57.895 0.00 0.00 0.00 3.46
2039 3368 0.882927 TTCCTCCCGTTGTTTCGCTG 60.883 55.000 0.00 0.00 0.00 5.18
2045 3374 2.644992 GTTGTTTCGCTGGGCCTG 59.355 61.111 4.53 5.32 0.00 4.85
2060 3389 0.313672 GCCTGTGCGTGGATGAAAAA 59.686 50.000 0.00 0.00 0.00 1.94
2062 3391 2.867429 CCTGTGCGTGGATGAAAAATC 58.133 47.619 0.00 0.00 0.00 2.17
2066 3395 5.041951 TGTGCGTGGATGAAAAATCTAAC 57.958 39.130 0.00 0.00 0.00 2.34
2096 3425 7.093201 ACCAAGAAACAGATGCATGGATATTTT 60.093 33.333 2.46 0.00 0.00 1.82
2109 3438 6.569610 GCATGGATATTTTATGTTGTACGGGG 60.570 42.308 0.00 0.00 0.00 5.73
2110 3439 4.822896 TGGATATTTTATGTTGTACGGGGC 59.177 41.667 0.00 0.00 0.00 5.80
2115 3444 4.506886 TTTATGTTGTACGGGGCAAAAG 57.493 40.909 0.00 0.00 0.00 2.27
2119 3448 0.885596 TTGTACGGGGCAAAAGACGG 60.886 55.000 0.00 0.00 0.00 4.79
2132 3461 0.250901 AAGACGGCCTTGCATCAAGT 60.251 50.000 0.00 0.00 39.58 3.16
2135 3464 0.957395 ACGGCCTTGCATCAAGTGAG 60.957 55.000 0.00 0.11 39.58 3.51
2170 3499 1.478105 CGATGTCCAGATGACTGTCCA 59.522 52.381 5.17 0.00 44.75 4.02
2186 3515 1.427809 TCCATGGTCTGGGCATCTAG 58.572 55.000 12.58 0.00 45.98 2.43
2194 3523 1.062886 TCTGGGCATCTAGTAGGCACT 60.063 52.381 11.46 0.00 39.66 4.40
2195 3524 1.069823 CTGGGCATCTAGTAGGCACTG 59.930 57.143 11.46 5.72 39.66 3.66
2196 3525 0.394565 GGGCATCTAGTAGGCACTGG 59.605 60.000 11.46 0.00 41.52 4.00
2206 3535 1.621814 GTAGGCACTGGTGACCTTACA 59.378 52.381 17.00 3.06 40.19 2.41
2265 3594 1.760029 TCCCAACTACGCTATGCATCA 59.240 47.619 0.19 0.00 0.00 3.07
2270 3599 4.319046 CCAACTACGCTATGCATCAATGAC 60.319 45.833 0.19 0.00 0.00 3.06
2275 3604 3.809832 ACGCTATGCATCAATGACCTTAC 59.190 43.478 0.19 0.00 0.00 2.34
2279 3608 3.326836 TGCATCAATGACCTTACGTGA 57.673 42.857 0.00 0.00 0.00 4.35
2299 3628 3.512329 TGAAACTCCCAACTACGCTATGA 59.488 43.478 0.00 0.00 0.00 2.15
2303 3632 2.952978 CTCCCAACTACGCTATGACTCT 59.047 50.000 0.00 0.00 0.00 3.24
2308 3637 5.063564 CCCAACTACGCTATGACTCTTTTTC 59.936 44.000 0.00 0.00 0.00 2.29
2309 3638 5.869888 CCAACTACGCTATGACTCTTTTTCT 59.130 40.000 0.00 0.00 0.00 2.52
2310 3639 6.369065 CCAACTACGCTATGACTCTTTTTCTT 59.631 38.462 0.00 0.00 0.00 2.52
2311 3640 7.412020 CCAACTACGCTATGACTCTTTTTCTTC 60.412 40.741 0.00 0.00 0.00 2.87
2312 3641 5.800941 ACTACGCTATGACTCTTTTTCTTCG 59.199 40.000 0.00 0.00 0.00 3.79
2313 3642 3.927142 ACGCTATGACTCTTTTTCTTCGG 59.073 43.478 0.00 0.00 0.00 4.30
2314 3643 3.927142 CGCTATGACTCTTTTTCTTCGGT 59.073 43.478 0.00 0.00 0.00 4.69
2315 3644 4.201628 CGCTATGACTCTTTTTCTTCGGTG 60.202 45.833 0.00 0.00 0.00 4.94
2316 3645 4.093556 GCTATGACTCTTTTTCTTCGGTGG 59.906 45.833 0.00 0.00 0.00 4.61
2317 3646 2.218603 TGACTCTTTTTCTTCGGTGGC 58.781 47.619 0.00 0.00 0.00 5.01
2318 3647 2.158813 TGACTCTTTTTCTTCGGTGGCT 60.159 45.455 0.00 0.00 0.00 4.75
2319 3648 2.222027 ACTCTTTTTCTTCGGTGGCTG 58.778 47.619 0.00 0.00 0.00 4.85
2320 3649 0.951558 TCTTTTTCTTCGGTGGCTGC 59.048 50.000 0.00 0.00 0.00 5.25
2321 3650 0.954452 CTTTTTCTTCGGTGGCTGCT 59.046 50.000 0.00 0.00 0.00 4.24
2322 3651 2.151202 CTTTTTCTTCGGTGGCTGCTA 58.849 47.619 0.00 0.00 0.00 3.49
2323 3652 2.489938 TTTTCTTCGGTGGCTGCTAT 57.510 45.000 0.00 0.00 0.00 2.97
2324 3653 1.737838 TTTCTTCGGTGGCTGCTATG 58.262 50.000 0.00 0.00 0.00 2.23
2325 3654 0.107703 TTCTTCGGTGGCTGCTATGG 60.108 55.000 0.00 0.00 0.00 2.74
2326 3655 1.221840 CTTCGGTGGCTGCTATGGT 59.778 57.895 0.00 0.00 0.00 3.55
2327 3656 1.078497 TTCGGTGGCTGCTATGGTG 60.078 57.895 0.00 0.00 0.00 4.17
2328 3657 2.514592 CGGTGGCTGCTATGGTGG 60.515 66.667 0.00 0.00 0.00 4.61
2329 3658 2.677228 GGTGGCTGCTATGGTGGT 59.323 61.111 0.00 0.00 0.00 4.16
2330 3659 1.750399 GGTGGCTGCTATGGTGGTG 60.750 63.158 0.00 0.00 0.00 4.17
2331 3660 2.045045 TGGCTGCTATGGTGGTGC 60.045 61.111 0.00 0.00 0.00 5.01
2332 3661 2.273449 GGCTGCTATGGTGGTGCT 59.727 61.111 0.00 0.00 0.00 4.40
2333 3662 2.117156 GGCTGCTATGGTGGTGCTG 61.117 63.158 0.00 0.00 0.00 4.41
2334 3663 2.117156 GCTGCTATGGTGGTGCTGG 61.117 63.158 0.00 0.00 0.00 4.85
2335 3664 1.603842 CTGCTATGGTGGTGCTGGA 59.396 57.895 0.00 0.00 0.00 3.86
2336 3665 0.463295 CTGCTATGGTGGTGCTGGAG 60.463 60.000 0.00 0.00 0.00 3.86
2337 3666 1.153086 GCTATGGTGGTGCTGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
2338 3667 1.915078 GCTATGGTGGTGCTGGAGGT 61.915 60.000 0.00 0.00 0.00 3.85
2339 3668 1.496060 CTATGGTGGTGCTGGAGGTA 58.504 55.000 0.00 0.00 0.00 3.08
2340 3669 1.414181 CTATGGTGGTGCTGGAGGTAG 59.586 57.143 0.00 0.00 0.00 3.18
2341 3670 1.274703 ATGGTGGTGCTGGAGGTAGG 61.275 60.000 0.00 0.00 0.00 3.18
2342 3671 1.918800 GGTGGTGCTGGAGGTAGGT 60.919 63.158 0.00 0.00 0.00 3.08
2343 3672 1.296715 GTGGTGCTGGAGGTAGGTG 59.703 63.158 0.00 0.00 0.00 4.00
2344 3673 1.157513 TGGTGCTGGAGGTAGGTGA 59.842 57.895 0.00 0.00 0.00 4.02
2345 3674 1.192146 TGGTGCTGGAGGTAGGTGAC 61.192 60.000 0.00 0.00 0.00 3.67
2346 3675 1.215647 GTGCTGGAGGTAGGTGACG 59.784 63.158 0.00 0.00 0.00 4.35
2347 3676 1.982395 TGCTGGAGGTAGGTGACGG 60.982 63.158 0.00 0.00 0.00 4.79
2348 3677 1.681327 GCTGGAGGTAGGTGACGGA 60.681 63.158 0.00 0.00 0.00 4.69
2349 3678 1.946475 GCTGGAGGTAGGTGACGGAC 61.946 65.000 0.00 0.00 0.00 4.79
2350 3679 1.654954 CTGGAGGTAGGTGACGGACG 61.655 65.000 0.00 0.00 0.00 4.79
2351 3680 2.488820 GAGGTAGGTGACGGACGC 59.511 66.667 0.00 0.00 0.00 5.19
2352 3681 2.035312 AGGTAGGTGACGGACGCT 59.965 61.111 0.00 0.00 0.00 5.07
2353 3682 2.181021 GGTAGGTGACGGACGCTG 59.819 66.667 0.00 0.00 0.00 5.18
2354 3683 2.181021 GTAGGTGACGGACGCTGG 59.819 66.667 0.00 0.00 0.00 4.85
2355 3684 2.282674 TAGGTGACGGACGCTGGT 60.283 61.111 0.00 0.00 0.00 4.00
2356 3685 2.632544 TAGGTGACGGACGCTGGTG 61.633 63.158 0.00 0.00 0.00 4.17
2357 3686 4.295119 GGTGACGGACGCTGGTGT 62.295 66.667 0.00 0.00 0.00 4.16
2358 3687 2.733593 GTGACGGACGCTGGTGTC 60.734 66.667 5.80 5.80 38.17 3.67
2359 3688 3.220658 TGACGGACGCTGGTGTCA 61.221 61.111 14.83 0.00 40.72 3.58
2360 3689 2.028484 GACGGACGCTGGTGTCAA 59.972 61.111 14.83 0.00 40.72 3.18
2361 3690 2.022129 GACGGACGCTGGTGTCAAG 61.022 63.158 14.83 10.69 40.72 3.02
2362 3691 3.414700 CGGACGCTGGTGTCAAGC 61.415 66.667 14.83 0.00 40.72 4.01
2363 3692 2.031163 GGACGCTGGTGTCAAGCT 59.969 61.111 14.83 0.00 40.72 3.74
2364 3693 2.029844 GGACGCTGGTGTCAAGCTC 61.030 63.158 14.83 0.00 40.72 4.09
2365 3694 1.300931 GACGCTGGTGTCAAGCTCA 60.301 57.895 9.10 0.00 38.75 4.26
2366 3695 1.287730 GACGCTGGTGTCAAGCTCAG 61.288 60.000 9.10 0.00 38.75 3.35
2367 3696 1.005748 CGCTGGTGTCAAGCTCAGA 60.006 57.895 2.22 0.00 0.00 3.27
2368 3697 0.601046 CGCTGGTGTCAAGCTCAGAA 60.601 55.000 2.22 0.00 0.00 3.02
2369 3698 1.597742 GCTGGTGTCAAGCTCAGAAA 58.402 50.000 2.22 0.00 0.00 2.52
2370 3699 2.157738 GCTGGTGTCAAGCTCAGAAAT 58.842 47.619 2.22 0.00 0.00 2.17
2371 3700 2.095364 GCTGGTGTCAAGCTCAGAAATG 60.095 50.000 2.22 0.00 0.00 2.32
2372 3701 3.144506 CTGGTGTCAAGCTCAGAAATGT 58.855 45.455 0.00 0.00 0.00 2.71
2373 3702 3.554934 TGGTGTCAAGCTCAGAAATGTT 58.445 40.909 0.00 0.00 0.00 2.71
2374 3703 3.565482 TGGTGTCAAGCTCAGAAATGTTC 59.435 43.478 0.00 0.00 0.00 3.18
2375 3704 3.817647 GGTGTCAAGCTCAGAAATGTTCT 59.182 43.478 0.00 0.00 41.70 3.01
2389 3718 7.992754 AGAAATGTTCTGCTATCTTTTCAGT 57.007 32.000 0.00 0.00 38.91 3.41
2390 3719 8.401490 AGAAATGTTCTGCTATCTTTTCAGTT 57.599 30.769 0.00 0.00 38.91 3.16
2391 3720 8.854117 AGAAATGTTCTGCTATCTTTTCAGTTT 58.146 29.630 0.00 0.00 38.91 2.66
2392 3721 9.468532 GAAATGTTCTGCTATCTTTTCAGTTTT 57.531 29.630 0.00 0.00 0.00 2.43
2393 3722 8.807667 AATGTTCTGCTATCTTTTCAGTTTTG 57.192 30.769 0.00 0.00 0.00 2.44
2394 3723 7.333528 TGTTCTGCTATCTTTTCAGTTTTGT 57.666 32.000 0.00 0.00 0.00 2.83
2395 3724 7.417612 TGTTCTGCTATCTTTTCAGTTTTGTC 58.582 34.615 0.00 0.00 0.00 3.18
2396 3725 7.066887 TGTTCTGCTATCTTTTCAGTTTTGTCA 59.933 33.333 0.00 0.00 0.00 3.58
2397 3726 7.750229 TCTGCTATCTTTTCAGTTTTGTCAT 57.250 32.000 0.00 0.00 0.00 3.06
2398 3727 7.587629 TCTGCTATCTTTTCAGTTTTGTCATG 58.412 34.615 0.00 0.00 0.00 3.07
2399 3728 7.229306 TCTGCTATCTTTTCAGTTTTGTCATGT 59.771 33.333 0.00 0.00 0.00 3.21
2400 3729 7.362662 TGCTATCTTTTCAGTTTTGTCATGTC 58.637 34.615 0.00 0.00 0.00 3.06
2401 3730 6.521133 GCTATCTTTTCAGTTTTGTCATGTCG 59.479 38.462 0.00 0.00 0.00 4.35
2402 3731 5.168526 TCTTTTCAGTTTTGTCATGTCGG 57.831 39.130 0.00 0.00 0.00 4.79
2403 3732 4.638421 TCTTTTCAGTTTTGTCATGTCGGT 59.362 37.500 0.00 0.00 0.00 4.69
2404 3733 4.545823 TTTCAGTTTTGTCATGTCGGTC 57.454 40.909 0.00 0.00 0.00 4.79
2405 3734 3.186702 TCAGTTTTGTCATGTCGGTCA 57.813 42.857 0.00 0.00 0.00 4.02
2406 3735 3.738982 TCAGTTTTGTCATGTCGGTCAT 58.261 40.909 0.00 0.00 37.22 3.06
2407 3736 4.133820 TCAGTTTTGTCATGTCGGTCATT 58.866 39.130 0.00 0.00 34.09 2.57
2408 3737 5.301555 TCAGTTTTGTCATGTCGGTCATTA 58.698 37.500 0.00 0.00 34.09 1.90
2409 3738 5.178623 TCAGTTTTGTCATGTCGGTCATTAC 59.821 40.000 0.00 0.00 34.09 1.89
2410 3739 5.049749 CAGTTTTGTCATGTCGGTCATTACA 60.050 40.000 0.00 0.00 38.42 2.41
2411 3740 5.705441 AGTTTTGTCATGTCGGTCATTACAT 59.295 36.000 3.70 0.00 39.43 2.29
2460 3789 6.902224 TGAATGAGACACATATTACCAACG 57.098 37.500 0.00 0.00 38.38 4.10
2461 3790 6.635755 TGAATGAGACACATATTACCAACGA 58.364 36.000 0.00 0.00 38.38 3.85
2462 3791 7.100409 TGAATGAGACACATATTACCAACGAA 58.900 34.615 0.00 0.00 38.38 3.85
2463 3792 7.604545 TGAATGAGACACATATTACCAACGAAA 59.395 33.333 0.00 0.00 38.38 3.46
2464 3793 7.915293 ATGAGACACATATTACCAACGAAAA 57.085 32.000 0.00 0.00 37.46 2.29
2465 3794 7.731882 TGAGACACATATTACCAACGAAAAA 57.268 32.000 0.00 0.00 0.00 1.94
2484 3813 1.949257 AATAGCGCGCTATTTGGGC 59.051 52.632 44.70 13.06 44.18 5.36
2493 3822 2.521996 CGCTATTTGGGCGTTTAAACC 58.478 47.619 12.66 5.64 46.37 3.27
2494 3823 2.162809 CGCTATTTGGGCGTTTAAACCT 59.837 45.455 12.66 0.00 46.37 3.50
2495 3824 3.507786 GCTATTTGGGCGTTTAAACCTG 58.492 45.455 12.66 1.02 0.00 4.00
2496 3825 3.674955 GCTATTTGGGCGTTTAAACCTGG 60.675 47.826 12.66 0.00 0.00 4.45
2497 3826 0.389757 TTTGGGCGTTTAAACCTGGC 59.610 50.000 12.66 11.26 0.00 4.85
2498 3827 0.468400 TTGGGCGTTTAAACCTGGCT 60.468 50.000 12.66 0.00 0.00 4.75
2499 3828 0.400975 TGGGCGTTTAAACCTGGCTA 59.599 50.000 12.66 7.18 0.00 3.93
2500 3829 1.004979 TGGGCGTTTAAACCTGGCTAT 59.995 47.619 12.66 0.00 0.00 2.97
2501 3830 2.239150 TGGGCGTTTAAACCTGGCTATA 59.761 45.455 12.66 1.64 0.00 1.31
2502 3831 2.876550 GGGCGTTTAAACCTGGCTATAG 59.123 50.000 12.66 0.00 0.00 1.31
2503 3832 2.289820 GGCGTTTAAACCTGGCTATAGC 59.710 50.000 16.78 16.78 41.14 2.97
2504 3833 2.033151 GCGTTTAAACCTGGCTATAGCG 60.033 50.000 18.30 7.55 43.26 4.26
2505 3834 3.192466 CGTTTAAACCTGGCTATAGCGT 58.808 45.455 18.30 8.20 43.26 5.07
2506 3835 4.362279 CGTTTAAACCTGGCTATAGCGTA 58.638 43.478 18.30 9.14 43.26 4.42
2507 3836 4.986659 CGTTTAAACCTGGCTATAGCGTAT 59.013 41.667 18.30 1.30 43.26 3.06
2508 3837 5.464389 CGTTTAAACCTGGCTATAGCGTATT 59.536 40.000 18.30 10.85 43.26 1.89
2509 3838 6.018507 CGTTTAAACCTGGCTATAGCGTATTT 60.019 38.462 18.30 16.33 43.26 1.40
2510 3839 6.854496 TTAAACCTGGCTATAGCGTATTTG 57.146 37.500 18.30 6.26 43.26 2.32
2511 3840 4.682778 AACCTGGCTATAGCGTATTTGA 57.317 40.909 18.30 0.00 43.26 2.69
2512 3841 4.258702 ACCTGGCTATAGCGTATTTGAG 57.741 45.455 18.30 5.45 43.26 3.02
2513 3842 3.006967 ACCTGGCTATAGCGTATTTGAGG 59.993 47.826 18.30 14.70 43.26 3.86
2514 3843 3.589988 CTGGCTATAGCGTATTTGAGGG 58.410 50.000 18.30 0.00 43.26 4.30
2515 3844 2.969950 TGGCTATAGCGTATTTGAGGGT 59.030 45.455 18.30 0.00 43.26 4.34
2516 3845 3.244078 TGGCTATAGCGTATTTGAGGGTG 60.244 47.826 18.30 0.00 43.26 4.61
2517 3846 2.737252 GCTATAGCGTATTTGAGGGTGC 59.263 50.000 9.40 0.00 0.00 5.01
2518 3847 2.256117 ATAGCGTATTTGAGGGTGCC 57.744 50.000 0.00 0.00 0.00 5.01
2519 3848 0.906066 TAGCGTATTTGAGGGTGCCA 59.094 50.000 0.00 0.00 0.00 4.92
2520 3849 0.255890 AGCGTATTTGAGGGTGCCAT 59.744 50.000 0.00 0.00 0.00 4.40
2521 3850 0.381801 GCGTATTTGAGGGTGCCATG 59.618 55.000 0.00 0.00 0.00 3.66
2522 3851 1.750193 CGTATTTGAGGGTGCCATGT 58.250 50.000 0.00 0.00 0.00 3.21
2523 3852 2.091541 CGTATTTGAGGGTGCCATGTT 58.908 47.619 0.00 0.00 0.00 2.71
2524 3853 3.275143 CGTATTTGAGGGTGCCATGTTA 58.725 45.455 0.00 0.00 0.00 2.41
2525 3854 3.882888 CGTATTTGAGGGTGCCATGTTAT 59.117 43.478 0.00 0.00 0.00 1.89
2526 3855 5.060506 CGTATTTGAGGGTGCCATGTTATA 58.939 41.667 0.00 0.00 0.00 0.98
2527 3856 5.705441 CGTATTTGAGGGTGCCATGTTATAT 59.295 40.000 0.00 0.00 0.00 0.86
2528 3857 6.206634 CGTATTTGAGGGTGCCATGTTATATT 59.793 38.462 0.00 0.00 0.00 1.28
2529 3858 7.255451 CGTATTTGAGGGTGCCATGTTATATTT 60.255 37.037 0.00 0.00 0.00 1.40
2530 3859 6.865834 TTTGAGGGTGCCATGTTATATTTT 57.134 33.333 0.00 0.00 0.00 1.82
2531 3860 7.962995 TTTGAGGGTGCCATGTTATATTTTA 57.037 32.000 0.00 0.00 0.00 1.52
2532 3861 7.581213 TTGAGGGTGCCATGTTATATTTTAG 57.419 36.000 0.00 0.00 0.00 1.85
2533 3862 5.534654 TGAGGGTGCCATGTTATATTTTAGC 59.465 40.000 0.00 0.00 0.00 3.09
2534 3863 5.705400 AGGGTGCCATGTTATATTTTAGCT 58.295 37.500 0.00 0.00 0.00 3.32
2535 3864 6.848069 AGGGTGCCATGTTATATTTTAGCTA 58.152 36.000 0.00 0.00 0.00 3.32
2536 3865 7.470192 AGGGTGCCATGTTATATTTTAGCTAT 58.530 34.615 0.00 0.00 0.00 2.97
2537 3866 7.950124 AGGGTGCCATGTTATATTTTAGCTATT 59.050 33.333 0.00 0.00 0.00 1.73
2538 3867 8.585018 GGGTGCCATGTTATATTTTAGCTATTT 58.415 33.333 0.00 0.00 0.00 1.40
2539 3868 9.981114 GGTGCCATGTTATATTTTAGCTATTTT 57.019 29.630 0.00 0.00 0.00 1.82
2552 3881 6.699895 TTAGCTATTTTACACGATATGCCG 57.300 37.500 0.00 0.00 0.00 5.69
2553 3882 3.432252 AGCTATTTTACACGATATGCCGC 59.568 43.478 0.00 0.00 0.00 6.53
2554 3883 3.432252 GCTATTTTACACGATATGCCGCT 59.568 43.478 0.00 0.00 0.00 5.52
2555 3884 4.624024 GCTATTTTACACGATATGCCGCTA 59.376 41.667 0.00 0.00 0.00 4.26
2556 3885 5.291128 GCTATTTTACACGATATGCCGCTAT 59.709 40.000 0.00 0.00 0.00 2.97
2557 3886 6.183360 GCTATTTTACACGATATGCCGCTATT 60.183 38.462 0.00 0.00 0.00 1.73
2558 3887 5.585500 TTTTACACGATATGCCGCTATTC 57.415 39.130 0.00 0.00 0.00 1.75
2559 3888 2.812358 ACACGATATGCCGCTATTCA 57.188 45.000 0.00 0.00 0.00 2.57
2560 3889 2.404215 ACACGATATGCCGCTATTCAC 58.596 47.619 0.00 0.00 0.00 3.18
2561 3890 1.386748 CACGATATGCCGCTATTCACG 59.613 52.381 0.00 0.00 0.00 4.35
2562 3891 1.000607 ACGATATGCCGCTATTCACGT 60.001 47.619 0.00 0.00 0.00 4.49
2563 3892 2.058798 CGATATGCCGCTATTCACGTT 58.941 47.619 0.00 0.00 0.00 3.99
2564 3893 3.239254 CGATATGCCGCTATTCACGTTA 58.761 45.455 0.00 0.00 0.00 3.18
2565 3894 3.857665 CGATATGCCGCTATTCACGTTAT 59.142 43.478 0.00 0.00 0.00 1.89
2566 3895 5.032220 CGATATGCCGCTATTCACGTTATA 58.968 41.667 0.00 0.00 0.00 0.98
2567 3896 5.171516 CGATATGCCGCTATTCACGTTATAG 59.828 44.000 9.20 9.20 0.00 1.31
2568 3897 2.400399 TGCCGCTATTCACGTTATAGC 58.600 47.619 21.40 21.40 44.42 2.97
2569 3898 2.035449 TGCCGCTATTCACGTTATAGCT 59.965 45.455 25.37 0.00 45.25 3.32
2570 3899 3.057734 GCCGCTATTCACGTTATAGCTT 58.942 45.455 25.37 0.00 45.25 3.74
2571 3900 3.120991 GCCGCTATTCACGTTATAGCTTG 60.121 47.826 25.37 19.86 45.25 4.01
2572 3901 3.120991 CCGCTATTCACGTTATAGCTTGC 60.121 47.826 25.37 10.20 45.25 4.01
2573 3902 3.736252 CGCTATTCACGTTATAGCTTGCT 59.264 43.478 25.37 0.00 45.25 3.91
2574 3903 4.375405 CGCTATTCACGTTATAGCTTGCTG 60.375 45.833 25.37 13.34 45.25 4.41
2575 3904 4.508124 GCTATTCACGTTATAGCTTGCTGT 59.492 41.667 22.95 0.90 44.45 4.40
2576 3905 5.690409 GCTATTCACGTTATAGCTTGCTGTA 59.310 40.000 22.95 0.00 44.45 2.74
2577 3906 6.200286 GCTATTCACGTTATAGCTTGCTGTAA 59.800 38.462 22.95 6.56 44.45 2.41
2578 3907 5.773239 TTCACGTTATAGCTTGCTGTAAC 57.227 39.130 23.28 23.28 0.00 2.50
2580 3909 3.836229 CGTTATAGCTTGCTGTAACGG 57.164 47.619 35.02 24.46 44.68 4.44
2581 3910 2.034001 CGTTATAGCTTGCTGTAACGGC 60.034 50.000 35.02 16.72 44.68 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 2.457366 AGCTACTTTTCACCTCCACG 57.543 50.000 0.00 0.00 0.00 4.94
191 192 7.486802 TTAGTTGGAAGCACTACTGTTTTAC 57.513 36.000 0.00 0.00 0.00 2.01
193 194 6.039382 CCTTTAGTTGGAAGCACTACTGTTTT 59.961 38.462 0.00 0.00 0.00 2.43
405 406 9.520204 ACAAAACACATTCTTCTTAGTCAATTG 57.480 29.630 0.00 0.00 0.00 2.32
449 450 7.754027 CAGTTTTTCTTATCTTGGCAATCTCAG 59.246 37.037 0.00 0.00 0.00 3.35
450 451 7.448161 TCAGTTTTTCTTATCTTGGCAATCTCA 59.552 33.333 0.00 0.00 0.00 3.27
451 452 7.820648 TCAGTTTTTCTTATCTTGGCAATCTC 58.179 34.615 0.00 0.00 0.00 2.75
452 453 7.667219 TCTCAGTTTTTCTTATCTTGGCAATCT 59.333 33.333 0.00 0.00 0.00 2.40
453 454 7.820648 TCTCAGTTTTTCTTATCTTGGCAATC 58.179 34.615 0.00 0.00 0.00 2.67
454 455 7.765695 TCTCAGTTTTTCTTATCTTGGCAAT 57.234 32.000 0.00 0.00 0.00 3.56
455 456 7.765695 ATCTCAGTTTTTCTTATCTTGGCAA 57.234 32.000 0.00 0.00 0.00 4.52
456 457 7.596494 CAATCTCAGTTTTTCTTATCTTGGCA 58.404 34.615 0.00 0.00 0.00 4.92
457 458 6.529477 GCAATCTCAGTTTTTCTTATCTTGGC 59.471 38.462 0.00 0.00 0.00 4.52
458 459 7.031975 GGCAATCTCAGTTTTTCTTATCTTGG 58.968 38.462 0.00 0.00 0.00 3.61
459 460 7.596494 TGGCAATCTCAGTTTTTCTTATCTTG 58.404 34.615 0.00 0.00 0.00 3.02
460 461 7.765695 TGGCAATCTCAGTTTTTCTTATCTT 57.234 32.000 0.00 0.00 0.00 2.40
461 462 7.449704 ACTTGGCAATCTCAGTTTTTCTTATCT 59.550 33.333 0.00 0.00 0.00 1.98
462 463 7.597386 ACTTGGCAATCTCAGTTTTTCTTATC 58.403 34.615 0.00 0.00 0.00 1.75
463 464 7.530426 ACTTGGCAATCTCAGTTTTTCTTAT 57.470 32.000 0.00 0.00 0.00 1.73
464 465 6.959639 ACTTGGCAATCTCAGTTTTTCTTA 57.040 33.333 0.00 0.00 0.00 2.10
465 466 5.859205 ACTTGGCAATCTCAGTTTTTCTT 57.141 34.783 0.00 0.00 0.00 2.52
466 467 6.959639 TTACTTGGCAATCTCAGTTTTTCT 57.040 33.333 0.00 0.00 0.00 2.52
467 468 7.706607 ACTTTTACTTGGCAATCTCAGTTTTTC 59.293 33.333 0.00 0.00 0.00 2.29
468 469 7.492344 CACTTTTACTTGGCAATCTCAGTTTTT 59.508 33.333 0.00 0.00 0.00 1.94
469 470 6.980397 CACTTTTACTTGGCAATCTCAGTTTT 59.020 34.615 0.00 0.00 0.00 2.43
470 471 6.096846 ACACTTTTACTTGGCAATCTCAGTTT 59.903 34.615 0.00 0.00 0.00 2.66
471 472 5.594317 ACACTTTTACTTGGCAATCTCAGTT 59.406 36.000 0.00 0.00 0.00 3.16
472 473 5.133221 ACACTTTTACTTGGCAATCTCAGT 58.867 37.500 0.00 0.00 0.00 3.41
560 562 4.809426 GGTCTTTCGGTCGAATGATGTATT 59.191 41.667 19.42 0.00 39.39 1.89
571 573 7.804843 ATATATAGATAGGGTCTTTCGGTCG 57.195 40.000 0.00 0.00 38.42 4.79
607 609 7.459486 GCGGCTAGATTCAACATATTAAGATG 58.541 38.462 8.52 8.52 0.00 2.90
703 1883 1.478137 GTACGCCAGAGATAGCAACG 58.522 55.000 0.00 0.00 0.00 4.10
720 1900 1.009903 CATTGCCACGGTCGTTCGTA 61.010 55.000 5.62 0.00 41.86 3.43
752 1933 1.063469 GCGATAAACAACCCACATCGG 59.937 52.381 4.67 0.00 39.04 4.18
778 1964 3.740115 AGCATACACGGTTCTCTTTGTT 58.260 40.909 0.00 0.00 0.00 2.83
849 2036 2.125773 TGACGAGAGGGTTAGTCTCC 57.874 55.000 0.00 0.00 37.73 3.71
958 2158 9.210329 TGCAAACTAATTAAGAGTTAATGACGA 57.790 29.630 6.09 0.00 36.10 4.20
1060 2303 1.671979 TCATACGACGGTGGGTCTAG 58.328 55.000 0.00 0.00 43.79 2.43
1098 2341 2.095978 GAGGCGGTGGCGTATACCAT 62.096 60.000 0.00 0.00 43.01 3.55
1123 2372 6.373774 GTGACTTTCCATTCATCATCTGAAGT 59.626 38.462 0.00 0.00 46.71 3.01
1195 2444 1.746470 GTACTGCGGCAACCCTTTAT 58.254 50.000 3.44 0.00 0.00 1.40
1275 2580 1.513158 CTCATCGAGTTGCCGGAGT 59.487 57.895 5.05 0.00 0.00 3.85
1358 2684 1.153529 ACGTTGTGCTTGACGGACA 60.154 52.632 10.17 0.00 42.62 4.02
1365 2691 2.177580 ACCCGTCACGTTGTGCTTG 61.178 57.895 0.00 0.00 32.98 4.01
1401 2727 1.595382 GAGGCACACTGAGCACGTT 60.595 57.895 0.69 0.00 0.00 3.99
1410 2736 4.235762 AACACGCCGAGGCACACT 62.236 61.111 15.03 0.00 42.06 3.55
1612 2938 5.221581 ACACTTACCAAATCTTCACCGTAGT 60.222 40.000 0.00 0.00 0.00 2.73
1638 2966 3.492421 AAAAGGCAACATCGCTACATG 57.508 42.857 0.00 0.00 41.41 3.21
1733 3061 9.803315 GGAATCAAACCAAAAATACCTATTCTC 57.197 33.333 0.00 0.00 0.00 2.87
1734 3062 8.758829 GGGAATCAAACCAAAAATACCTATTCT 58.241 33.333 0.00 0.00 0.00 2.40
1735 3063 7.985184 GGGGAATCAAACCAAAAATACCTATTC 59.015 37.037 0.00 0.00 0.00 1.75
1736 3064 7.682459 AGGGGAATCAAACCAAAAATACCTATT 59.318 33.333 0.00 0.00 0.00 1.73
1737 3065 7.196187 AGGGGAATCAAACCAAAAATACCTAT 58.804 34.615 0.00 0.00 0.00 2.57
1738 3066 6.566914 AGGGGAATCAAACCAAAAATACCTA 58.433 36.000 0.00 0.00 0.00 3.08
1739 3067 5.411493 AGGGGAATCAAACCAAAAATACCT 58.589 37.500 0.00 0.00 0.00 3.08
1740 3068 5.755409 AGGGGAATCAAACCAAAAATACC 57.245 39.130 0.00 0.00 0.00 2.73
1741 3069 5.411361 GCAAGGGGAATCAAACCAAAAATAC 59.589 40.000 0.00 0.00 0.00 1.89
1742 3070 5.309282 AGCAAGGGGAATCAAACCAAAAATA 59.691 36.000 0.00 0.00 0.00 1.40
1743 3071 4.104579 AGCAAGGGGAATCAAACCAAAAAT 59.895 37.500 0.00 0.00 0.00 1.82
1744 3072 3.457749 AGCAAGGGGAATCAAACCAAAAA 59.542 39.130 0.00 0.00 0.00 1.94
1745 3073 3.044894 AGCAAGGGGAATCAAACCAAAA 58.955 40.909 0.00 0.00 0.00 2.44
1746 3074 2.688477 AGCAAGGGGAATCAAACCAAA 58.312 42.857 0.00 0.00 0.00 3.28
1747 3075 2.397044 AGCAAGGGGAATCAAACCAA 57.603 45.000 0.00 0.00 0.00 3.67
1748 3076 2.247358 GAAGCAAGGGGAATCAAACCA 58.753 47.619 0.00 0.00 0.00 3.67
1749 3077 1.202348 CGAAGCAAGGGGAATCAAACC 59.798 52.381 0.00 0.00 0.00 3.27
1750 3078 2.636768 CGAAGCAAGGGGAATCAAAC 57.363 50.000 0.00 0.00 0.00 2.93
1765 3093 5.532025 AAAAATCCTTAAGACGAGCGAAG 57.468 39.130 3.36 0.00 0.00 3.79
1766 3094 5.061311 CGTAAAAATCCTTAAGACGAGCGAA 59.939 40.000 3.36 0.00 0.00 4.70
1767 3095 4.560035 CGTAAAAATCCTTAAGACGAGCGA 59.440 41.667 3.36 0.00 0.00 4.93
1768 3096 4.325472 ACGTAAAAATCCTTAAGACGAGCG 59.675 41.667 15.05 7.14 33.30 5.03
1769 3097 5.774878 ACGTAAAAATCCTTAAGACGAGC 57.225 39.130 15.05 0.00 33.30 5.03
1770 3098 6.742718 TCGTACGTAAAAATCCTTAAGACGAG 59.257 38.462 16.05 7.81 33.30 4.18
1771 3099 6.523201 GTCGTACGTAAAAATCCTTAAGACGA 59.477 38.462 16.05 9.67 33.30 4.20
1772 3100 6.524586 AGTCGTACGTAAAAATCCTTAAGACG 59.475 38.462 16.05 6.56 35.10 4.18
1773 3101 7.803079 AGTCGTACGTAAAAATCCTTAAGAC 57.197 36.000 16.05 0.00 0.00 3.01
1774 3102 9.507280 CATAGTCGTACGTAAAAATCCTTAAGA 57.493 33.333 16.05 0.00 0.00 2.10
1775 3103 9.507280 TCATAGTCGTACGTAAAAATCCTTAAG 57.493 33.333 16.05 0.00 0.00 1.85
1776 3104 9.289303 GTCATAGTCGTACGTAAAAATCCTTAA 57.711 33.333 16.05 0.00 0.00 1.85
1777 3105 8.677300 AGTCATAGTCGTACGTAAAAATCCTTA 58.323 33.333 16.05 0.00 0.00 2.69
1778 3106 7.542025 AGTCATAGTCGTACGTAAAAATCCTT 58.458 34.615 16.05 0.00 0.00 3.36
1779 3107 7.093322 AGTCATAGTCGTACGTAAAAATCCT 57.907 36.000 16.05 1.34 0.00 3.24
1780 3108 8.841444 TTAGTCATAGTCGTACGTAAAAATCC 57.159 34.615 16.05 0.00 0.00 3.01
1784 3112 9.891828 TCTTTTTAGTCATAGTCGTACGTAAAA 57.108 29.630 16.05 12.52 0.00 1.52
1791 3119 9.390795 GCGATTATCTTTTTAGTCATAGTCGTA 57.609 33.333 0.00 0.00 34.92 3.43
1792 3120 7.381678 GGCGATTATCTTTTTAGTCATAGTCGT 59.618 37.037 0.00 0.00 34.92 4.34
1793 3121 7.409449 CGGCGATTATCTTTTTAGTCATAGTCG 60.409 40.741 0.00 0.00 35.32 4.18
1794 3122 7.148787 CCGGCGATTATCTTTTTAGTCATAGTC 60.149 40.741 9.30 0.00 0.00 2.59
1795 3123 6.645415 CCGGCGATTATCTTTTTAGTCATAGT 59.355 38.462 9.30 0.00 0.00 2.12
1796 3124 6.866770 TCCGGCGATTATCTTTTTAGTCATAG 59.133 38.462 9.30 0.00 0.00 2.23
1797 3125 6.751157 TCCGGCGATTATCTTTTTAGTCATA 58.249 36.000 9.30 0.00 0.00 2.15
1798 3126 5.607477 TCCGGCGATTATCTTTTTAGTCAT 58.393 37.500 9.30 0.00 0.00 3.06
1799 3127 5.013568 TCCGGCGATTATCTTTTTAGTCA 57.986 39.130 9.30 0.00 0.00 3.41
1809 3137 0.033504 TCTTGGCTCCGGCGATTATC 59.966 55.000 9.30 0.00 39.81 1.75
1819 3147 0.108585 TGTGTTCCACTCTTGGCTCC 59.891 55.000 0.00 0.00 43.56 4.70
1820 3148 1.230324 GTGTGTTCCACTCTTGGCTC 58.770 55.000 0.00 0.00 43.56 4.70
1822 3150 0.465460 TGGTGTGTTCCACTCTTGGC 60.465 55.000 0.00 0.00 43.56 4.52
1831 3159 4.097437 TCTCTCGTATATGTGGTGTGTTCC 59.903 45.833 0.00 0.00 0.00 3.62
1832 3160 5.035443 GTCTCTCGTATATGTGGTGTGTTC 58.965 45.833 0.00 0.00 0.00 3.18
1840 3168 5.465051 CCTTGGATGTCTCTCGTATATGTG 58.535 45.833 0.00 0.00 0.00 3.21
1843 3171 4.090090 CCCCTTGGATGTCTCTCGTATAT 58.910 47.826 0.00 0.00 0.00 0.86
1849 3177 1.680249 GCAACCCCTTGGATGTCTCTC 60.680 57.143 0.00 0.00 36.81 3.20
1850 3178 0.329596 GCAACCCCTTGGATGTCTCT 59.670 55.000 0.00 0.00 36.81 3.10
1853 3181 1.076549 TGGCAACCCCTTGGATGTC 59.923 57.895 0.00 0.00 39.36 3.06
1872 3200 1.676746 CATCATCTTGTCTGGCTGGG 58.323 55.000 0.00 0.00 0.00 4.45
1880 3208 7.312657 TCACTTTAGAATGCATCATCTTGTC 57.687 36.000 6.23 0.00 0.00 3.18
1916 3245 9.599866 CCAGTGTCACAGATAACAAAATCTATA 57.400 33.333 5.62 0.00 34.40 1.31
1938 3267 0.398318 GCCTGGACTCTTCAACCAGT 59.602 55.000 0.00 0.00 46.61 4.00
1945 3274 1.000955 TCGACTTTGCCTGGACTCTTC 59.999 52.381 0.00 0.00 0.00 2.87
1951 3280 1.302511 GGCTTCGACTTTGCCTGGA 60.303 57.895 0.00 0.00 43.05 3.86
1972 3301 1.271597 ACATGGAAACTCAGTCCTGCC 60.272 52.381 0.00 0.00 36.03 4.85
1975 3304 2.107204 AGCAACATGGAAACTCAGTCCT 59.893 45.455 0.00 0.00 36.03 3.85
1976 3305 2.227388 CAGCAACATGGAAACTCAGTCC 59.773 50.000 0.00 0.00 35.55 3.85
1979 3308 1.542915 CCCAGCAACATGGAAACTCAG 59.457 52.381 0.00 0.00 43.57 3.35
1990 3319 2.887738 AAAGGCCCAACCCAGCAACA 62.888 55.000 0.00 0.00 40.58 3.33
2007 3336 1.072505 GAGGAACCCGTCAGGCAAA 59.927 57.895 0.00 0.00 40.58 3.68
2008 3337 2.747686 GAGGAACCCGTCAGGCAA 59.252 61.111 0.00 0.00 40.58 4.52
2009 3338 3.319198 GGAGGAACCCGTCAGGCA 61.319 66.667 0.00 0.00 40.58 4.75
2039 3368 3.918253 TTCATCCACGCACAGGCCC 62.918 63.158 0.00 0.00 36.38 5.80
2045 3374 5.296813 AGTTAGATTTTTCATCCACGCAC 57.703 39.130 0.00 0.00 0.00 5.34
2060 3389 8.486210 TGCATCTGTTTCTTGGTATAGTTAGAT 58.514 33.333 0.00 0.00 0.00 1.98
2062 3391 8.554528 CATGCATCTGTTTCTTGGTATAGTTAG 58.445 37.037 0.00 0.00 0.00 2.34
2066 3395 6.057533 TCCATGCATCTGTTTCTTGGTATAG 58.942 40.000 0.00 0.00 0.00 1.31
2096 3425 3.075884 GTCTTTTGCCCCGTACAACATA 58.924 45.455 0.00 0.00 0.00 2.29
2109 3438 0.733909 GATGCAAGGCCGTCTTTTGC 60.734 55.000 17.38 17.38 45.53 3.68
2110 3439 0.597568 TGATGCAAGGCCGTCTTTTG 59.402 50.000 0.00 0.00 32.41 2.44
2115 3444 0.955428 TCACTTGATGCAAGGCCGTC 60.955 55.000 11.40 0.00 44.81 4.79
2119 3448 1.246056 TGCCTCACTTGATGCAAGGC 61.246 55.000 15.05 15.05 44.81 4.35
2170 3499 2.614259 CCTACTAGATGCCCAGACCAT 58.386 52.381 0.00 0.00 0.00 3.55
2181 3510 2.023888 AGGTCACCAGTGCCTACTAGAT 60.024 50.000 10.74 0.00 36.06 1.98
2186 3515 1.621814 TGTAAGGTCACCAGTGCCTAC 59.378 52.381 12.24 11.11 36.55 3.18
2194 3523 2.304761 GGAGTTCCATGTAAGGTCACCA 59.695 50.000 0.00 0.00 35.64 4.17
2195 3524 2.355818 GGGAGTTCCATGTAAGGTCACC 60.356 54.545 0.00 0.00 37.91 4.02
2196 3525 2.304761 TGGGAGTTCCATGTAAGGTCAC 59.695 50.000 0.00 0.00 41.46 3.67
2206 3535 0.252197 GGCGTAGTTGGGAGTTCCAT 59.748 55.000 0.00 0.00 46.52 3.41
2238 3567 4.504858 CATAGCGTAGTTGGGAGTTCTTT 58.495 43.478 0.00 0.00 0.00 2.52
2239 3568 3.679083 GCATAGCGTAGTTGGGAGTTCTT 60.679 47.826 0.00 0.00 0.00 2.52
2240 3569 2.159085 GCATAGCGTAGTTGGGAGTTCT 60.159 50.000 0.00 0.00 0.00 3.01
2241 3570 2.202566 GCATAGCGTAGTTGGGAGTTC 58.797 52.381 0.00 0.00 0.00 3.01
2244 3573 2.224042 TGATGCATAGCGTAGTTGGGAG 60.224 50.000 0.00 0.00 0.00 4.30
2265 3594 3.071892 TGGGAGTTTCACGTAAGGTCATT 59.928 43.478 0.00 0.00 46.39 2.57
2270 3599 3.121738 AGTTGGGAGTTTCACGTAAGG 57.878 47.619 0.00 0.00 46.39 2.69
2275 3604 0.788391 GCGTAGTTGGGAGTTTCACG 59.212 55.000 0.00 0.00 0.00 4.35
2279 3608 3.514309 AGTCATAGCGTAGTTGGGAGTTT 59.486 43.478 0.00 0.00 0.00 2.66
2299 3628 2.222027 CAGCCACCGAAGAAAAAGAGT 58.778 47.619 0.00 0.00 0.00 3.24
2303 3632 2.264005 TAGCAGCCACCGAAGAAAAA 57.736 45.000 0.00 0.00 0.00 1.94
2308 3637 1.091771 CACCATAGCAGCCACCGAAG 61.092 60.000 0.00 0.00 0.00 3.79
2309 3638 1.078497 CACCATAGCAGCCACCGAA 60.078 57.895 0.00 0.00 0.00 4.30
2310 3639 2.584064 CACCATAGCAGCCACCGA 59.416 61.111 0.00 0.00 0.00 4.69
2311 3640 2.514592 CCACCATAGCAGCCACCG 60.515 66.667 0.00 0.00 0.00 4.94
2312 3641 1.750399 CACCACCATAGCAGCCACC 60.750 63.158 0.00 0.00 0.00 4.61
2313 3642 2.409870 GCACCACCATAGCAGCCAC 61.410 63.158 0.00 0.00 0.00 5.01
2314 3643 2.045045 GCACCACCATAGCAGCCA 60.045 61.111 0.00 0.00 0.00 4.75
2315 3644 2.117156 CAGCACCACCATAGCAGCC 61.117 63.158 0.00 0.00 0.00 4.85
2316 3645 2.117156 CCAGCACCACCATAGCAGC 61.117 63.158 0.00 0.00 0.00 5.25
2317 3646 0.463295 CTCCAGCACCACCATAGCAG 60.463 60.000 0.00 0.00 0.00 4.24
2318 3647 1.603842 CTCCAGCACCACCATAGCA 59.396 57.895 0.00 0.00 0.00 3.49
2319 3648 1.153086 CCTCCAGCACCACCATAGC 60.153 63.158 0.00 0.00 0.00 2.97
2320 3649 1.414181 CTACCTCCAGCACCACCATAG 59.586 57.143 0.00 0.00 0.00 2.23
2321 3650 1.496060 CTACCTCCAGCACCACCATA 58.504 55.000 0.00 0.00 0.00 2.74
2322 3651 1.274703 CCTACCTCCAGCACCACCAT 61.275 60.000 0.00 0.00 0.00 3.55
2323 3652 1.918293 CCTACCTCCAGCACCACCA 60.918 63.158 0.00 0.00 0.00 4.17
2324 3653 1.918800 ACCTACCTCCAGCACCACC 60.919 63.158 0.00 0.00 0.00 4.61
2325 3654 1.192146 TCACCTACCTCCAGCACCAC 61.192 60.000 0.00 0.00 0.00 4.16
2326 3655 1.157513 TCACCTACCTCCAGCACCA 59.842 57.895 0.00 0.00 0.00 4.17
2327 3656 1.597461 GTCACCTACCTCCAGCACC 59.403 63.158 0.00 0.00 0.00 5.01
2328 3657 1.215647 CGTCACCTACCTCCAGCAC 59.784 63.158 0.00 0.00 0.00 4.40
2329 3658 1.982395 CCGTCACCTACCTCCAGCA 60.982 63.158 0.00 0.00 0.00 4.41
2330 3659 1.681327 TCCGTCACCTACCTCCAGC 60.681 63.158 0.00 0.00 0.00 4.85
2331 3660 1.654954 CGTCCGTCACCTACCTCCAG 61.655 65.000 0.00 0.00 0.00 3.86
2332 3661 1.676635 CGTCCGTCACCTACCTCCA 60.677 63.158 0.00 0.00 0.00 3.86
2333 3662 3.061260 GCGTCCGTCACCTACCTCC 62.061 68.421 0.00 0.00 0.00 4.30
2334 3663 2.045131 AGCGTCCGTCACCTACCTC 61.045 63.158 0.00 0.00 0.00 3.85
2335 3664 2.035312 AGCGTCCGTCACCTACCT 59.965 61.111 0.00 0.00 0.00 3.08
2336 3665 2.181021 CAGCGTCCGTCACCTACC 59.819 66.667 0.00 0.00 0.00 3.18
2337 3666 2.181021 CCAGCGTCCGTCACCTAC 59.819 66.667 0.00 0.00 0.00 3.18
2338 3667 2.282674 ACCAGCGTCCGTCACCTA 60.283 61.111 0.00 0.00 0.00 3.08
2339 3668 3.991051 CACCAGCGTCCGTCACCT 61.991 66.667 0.00 0.00 0.00 4.00
2340 3669 4.295119 ACACCAGCGTCCGTCACC 62.295 66.667 0.00 0.00 0.00 4.02
2341 3670 2.733593 GACACCAGCGTCCGTCAC 60.734 66.667 0.00 0.00 0.00 3.67
2342 3671 2.693250 CTTGACACCAGCGTCCGTCA 62.693 60.000 0.00 0.00 36.63 4.35
2343 3672 2.022129 CTTGACACCAGCGTCCGTC 61.022 63.158 0.00 0.00 34.88 4.79
2344 3673 2.029073 CTTGACACCAGCGTCCGT 59.971 61.111 0.00 0.00 34.88 4.69
2345 3674 3.414700 GCTTGACACCAGCGTCCG 61.415 66.667 0.00 0.00 34.88 4.79
2346 3675 2.029844 GAGCTTGACACCAGCGTCC 61.030 63.158 0.00 0.00 34.88 4.79
2347 3676 1.287730 CTGAGCTTGACACCAGCGTC 61.288 60.000 0.00 0.00 36.40 5.19
2348 3677 1.301244 CTGAGCTTGACACCAGCGT 60.301 57.895 0.00 0.00 0.00 5.07
2349 3678 0.601046 TTCTGAGCTTGACACCAGCG 60.601 55.000 0.00 0.00 0.00 5.18
2350 3679 1.597742 TTTCTGAGCTTGACACCAGC 58.402 50.000 0.00 0.00 0.00 4.85
2351 3680 3.144506 ACATTTCTGAGCTTGACACCAG 58.855 45.455 0.00 0.00 0.00 4.00
2352 3681 3.213206 ACATTTCTGAGCTTGACACCA 57.787 42.857 0.00 0.00 0.00 4.17
2353 3682 3.817647 AGAACATTTCTGAGCTTGACACC 59.182 43.478 0.00 0.00 38.91 4.16
2365 3694 7.992754 ACTGAAAAGATAGCAGAACATTTCT 57.007 32.000 0.00 0.00 41.70 2.52
2366 3695 9.468532 AAAACTGAAAAGATAGCAGAACATTTC 57.531 29.630 0.00 0.00 33.94 2.17
2367 3696 9.252962 CAAAACTGAAAAGATAGCAGAACATTT 57.747 29.630 0.00 0.00 33.94 2.32
2368 3697 8.416329 ACAAAACTGAAAAGATAGCAGAACATT 58.584 29.630 0.00 0.00 33.94 2.71
2369 3698 7.945134 ACAAAACTGAAAAGATAGCAGAACAT 58.055 30.769 0.00 0.00 33.94 2.71
2370 3699 7.066887 TGACAAAACTGAAAAGATAGCAGAACA 59.933 33.333 0.00 0.00 33.94 3.18
2371 3700 7.417612 TGACAAAACTGAAAAGATAGCAGAAC 58.582 34.615 0.00 0.00 33.94 3.01
2372 3701 7.566760 TGACAAAACTGAAAAGATAGCAGAA 57.433 32.000 0.00 0.00 33.94 3.02
2373 3702 7.229306 ACATGACAAAACTGAAAAGATAGCAGA 59.771 33.333 0.00 0.00 33.94 4.26
2374 3703 7.365741 ACATGACAAAACTGAAAAGATAGCAG 58.634 34.615 0.00 0.00 35.81 4.24
2375 3704 7.275888 ACATGACAAAACTGAAAAGATAGCA 57.724 32.000 0.00 0.00 0.00 3.49
2376 3705 6.521133 CGACATGACAAAACTGAAAAGATAGC 59.479 38.462 0.00 0.00 0.00 2.97
2377 3706 7.017645 CCGACATGACAAAACTGAAAAGATAG 58.982 38.462 0.00 0.00 0.00 2.08
2378 3707 6.485313 ACCGACATGACAAAACTGAAAAGATA 59.515 34.615 0.00 0.00 0.00 1.98
2379 3708 5.299279 ACCGACATGACAAAACTGAAAAGAT 59.701 36.000 0.00 0.00 0.00 2.40
2380 3709 4.638421 ACCGACATGACAAAACTGAAAAGA 59.362 37.500 0.00 0.00 0.00 2.52
2381 3710 4.920376 ACCGACATGACAAAACTGAAAAG 58.080 39.130 0.00 0.00 0.00 2.27
2382 3711 4.396478 TGACCGACATGACAAAACTGAAAA 59.604 37.500 0.00 0.00 0.00 2.29
2383 3712 3.942115 TGACCGACATGACAAAACTGAAA 59.058 39.130 0.00 0.00 0.00 2.69
2384 3713 3.536570 TGACCGACATGACAAAACTGAA 58.463 40.909 0.00 0.00 0.00 3.02
2385 3714 3.186702 TGACCGACATGACAAAACTGA 57.813 42.857 0.00 0.00 0.00 3.41
2386 3715 4.488126 AATGACCGACATGACAAAACTG 57.512 40.909 0.00 0.00 39.39 3.16
2387 3716 5.060506 TGTAATGACCGACATGACAAAACT 58.939 37.500 0.00 0.00 44.63 2.66
2388 3717 5.351233 TGTAATGACCGACATGACAAAAC 57.649 39.130 0.00 0.00 44.63 2.43
2434 3763 9.208022 CGTTGGTAATATGTGTCTCATTCATAT 57.792 33.333 0.00 0.00 37.91 1.78
2435 3764 8.417884 TCGTTGGTAATATGTGTCTCATTCATA 58.582 33.333 0.00 0.00 37.91 2.15
2436 3765 7.272244 TCGTTGGTAATATGTGTCTCATTCAT 58.728 34.615 0.00 0.00 37.91 2.57
2437 3766 6.635755 TCGTTGGTAATATGTGTCTCATTCA 58.364 36.000 0.00 0.00 37.91 2.57
2438 3767 7.534085 TTCGTTGGTAATATGTGTCTCATTC 57.466 36.000 0.00 0.00 37.91 2.67
2439 3768 7.915293 TTTCGTTGGTAATATGTGTCTCATT 57.085 32.000 0.00 0.00 37.91 2.57
2440 3769 7.915293 TTTTCGTTGGTAATATGTGTCTCAT 57.085 32.000 0.00 0.00 40.25 2.90
2441 3770 7.731882 TTTTTCGTTGGTAATATGTGTCTCA 57.268 32.000 0.00 0.00 0.00 3.27
2467 3796 3.655481 GCCCAAATAGCGCGCTAT 58.345 55.556 40.32 40.32 40.63 2.97
2474 3803 3.507786 CAGGTTTAAACGCCCAAATAGC 58.492 45.455 12.07 0.00 0.00 2.97
2475 3804 3.674955 GCCAGGTTTAAACGCCCAAATAG 60.675 47.826 12.07 0.00 0.00 1.73
2476 3805 2.231721 GCCAGGTTTAAACGCCCAAATA 59.768 45.455 12.07 0.00 0.00 1.40
2477 3806 1.001520 GCCAGGTTTAAACGCCCAAAT 59.998 47.619 12.07 0.00 0.00 2.32
2478 3807 0.389757 GCCAGGTTTAAACGCCCAAA 59.610 50.000 12.07 0.00 0.00 3.28
2479 3808 0.468400 AGCCAGGTTTAAACGCCCAA 60.468 50.000 12.07 0.00 0.00 4.12
2480 3809 0.400975 TAGCCAGGTTTAAACGCCCA 59.599 50.000 12.07 0.00 0.00 5.36
2481 3810 1.758936 ATAGCCAGGTTTAAACGCCC 58.241 50.000 12.07 0.00 0.00 6.13
2482 3811 2.289820 GCTATAGCCAGGTTTAAACGCC 59.710 50.000 14.13 0.00 34.31 5.68
2483 3812 2.033151 CGCTATAGCCAGGTTTAAACGC 60.033 50.000 19.00 9.96 37.91 4.84
2484 3813 3.192466 ACGCTATAGCCAGGTTTAAACG 58.808 45.455 19.00 2.96 37.91 3.60
2485 3814 6.856135 AATACGCTATAGCCAGGTTTAAAC 57.144 37.500 19.00 9.98 37.91 2.01
2486 3815 7.049133 TCAAATACGCTATAGCCAGGTTTAAA 58.951 34.615 19.00 4.96 37.91 1.52
2487 3816 6.584488 TCAAATACGCTATAGCCAGGTTTAA 58.416 36.000 19.00 0.00 37.91 1.52
2488 3817 6.164417 TCAAATACGCTATAGCCAGGTTTA 57.836 37.500 19.00 1.89 37.91 2.01
2489 3818 5.031066 TCAAATACGCTATAGCCAGGTTT 57.969 39.130 19.00 11.56 37.91 3.27
2490 3819 4.503296 CCTCAAATACGCTATAGCCAGGTT 60.503 45.833 19.00 5.92 37.91 3.50
2491 3820 3.006967 CCTCAAATACGCTATAGCCAGGT 59.993 47.826 19.00 13.22 37.91 4.00
2492 3821 3.589988 CCTCAAATACGCTATAGCCAGG 58.410 50.000 19.00 7.80 37.91 4.45
2493 3822 3.006967 ACCCTCAAATACGCTATAGCCAG 59.993 47.826 19.00 8.53 37.91 4.85
2494 3823 2.969950 ACCCTCAAATACGCTATAGCCA 59.030 45.455 19.00 7.61 37.91 4.75
2495 3824 3.326747 CACCCTCAAATACGCTATAGCC 58.673 50.000 19.00 1.80 37.91 3.93
2496 3825 2.737252 GCACCCTCAAATACGCTATAGC 59.263 50.000 15.09 15.09 37.78 2.97
2497 3826 3.244078 TGGCACCCTCAAATACGCTATAG 60.244 47.826 0.00 0.00 0.00 1.31
2498 3827 2.701423 TGGCACCCTCAAATACGCTATA 59.299 45.455 0.00 0.00 0.00 1.31
2499 3828 1.488812 TGGCACCCTCAAATACGCTAT 59.511 47.619 0.00 0.00 0.00 2.97
2500 3829 0.906066 TGGCACCCTCAAATACGCTA 59.094 50.000 0.00 0.00 0.00 4.26
2501 3830 0.255890 ATGGCACCCTCAAATACGCT 59.744 50.000 0.00 0.00 0.00 5.07
2502 3831 0.381801 CATGGCACCCTCAAATACGC 59.618 55.000 0.00 0.00 0.00 4.42
2503 3832 1.750193 ACATGGCACCCTCAAATACG 58.250 50.000 0.00 0.00 0.00 3.06
2504 3833 7.524717 AATATAACATGGCACCCTCAAATAC 57.475 36.000 0.00 0.00 0.00 1.89
2505 3834 8.546083 AAAATATAACATGGCACCCTCAAATA 57.454 30.769 0.00 0.00 0.00 1.40
2506 3835 7.436320 AAAATATAACATGGCACCCTCAAAT 57.564 32.000 0.00 0.00 0.00 2.32
2507 3836 6.865834 AAAATATAACATGGCACCCTCAAA 57.134 33.333 0.00 0.00 0.00 2.69
2508 3837 6.040391 GCTAAAATATAACATGGCACCCTCAA 59.960 38.462 0.00 0.00 0.00 3.02
2509 3838 5.534654 GCTAAAATATAACATGGCACCCTCA 59.465 40.000 0.00 0.00 0.00 3.86
2510 3839 5.770162 AGCTAAAATATAACATGGCACCCTC 59.230 40.000 0.00 0.00 0.00 4.30
2511 3840 5.705400 AGCTAAAATATAACATGGCACCCT 58.295 37.500 0.00 0.00 0.00 4.34
2512 3841 7.703058 ATAGCTAAAATATAACATGGCACCC 57.297 36.000 0.00 0.00 0.00 4.61
2513 3842 9.981114 AAAATAGCTAAAATATAACATGGCACC 57.019 29.630 0.00 0.00 0.00 5.01
2526 3855 8.227791 CGGCATATCGTGTAAAATAGCTAAAAT 58.772 33.333 0.00 0.00 0.00 1.82
2527 3856 7.569297 CGGCATATCGTGTAAAATAGCTAAAA 58.431 34.615 0.00 0.00 0.00 1.52
2528 3857 6.347079 GCGGCATATCGTGTAAAATAGCTAAA 60.347 38.462 0.00 0.00 0.00 1.85
2529 3858 5.119588 GCGGCATATCGTGTAAAATAGCTAA 59.880 40.000 0.00 0.00 0.00 3.09
2530 3859 4.624024 GCGGCATATCGTGTAAAATAGCTA 59.376 41.667 0.00 0.00 0.00 3.32
2531 3860 3.432252 GCGGCATATCGTGTAAAATAGCT 59.568 43.478 0.00 0.00 0.00 3.32
2532 3861 3.432252 AGCGGCATATCGTGTAAAATAGC 59.568 43.478 1.45 0.00 0.00 2.97
2533 3862 6.887376 ATAGCGGCATATCGTGTAAAATAG 57.113 37.500 1.45 0.00 0.00 1.73
2534 3863 6.869388 TGAATAGCGGCATATCGTGTAAAATA 59.131 34.615 1.45 0.00 0.00 1.40
2535 3864 5.699001 TGAATAGCGGCATATCGTGTAAAAT 59.301 36.000 1.45 0.00 0.00 1.82
2536 3865 5.050634 GTGAATAGCGGCATATCGTGTAAAA 60.051 40.000 1.45 0.00 0.00 1.52
2537 3866 4.446385 GTGAATAGCGGCATATCGTGTAAA 59.554 41.667 1.45 0.00 0.00 2.01
2538 3867 3.985279 GTGAATAGCGGCATATCGTGTAA 59.015 43.478 1.45 0.00 0.00 2.41
2539 3868 3.571571 GTGAATAGCGGCATATCGTGTA 58.428 45.455 1.45 0.00 0.00 2.90
2540 3869 2.404215 GTGAATAGCGGCATATCGTGT 58.596 47.619 1.45 0.00 0.00 4.49
2541 3870 1.386748 CGTGAATAGCGGCATATCGTG 59.613 52.381 1.45 0.00 0.00 4.35
2542 3871 1.000607 ACGTGAATAGCGGCATATCGT 60.001 47.619 1.45 2.58 0.00 3.73
2543 3872 1.698165 ACGTGAATAGCGGCATATCG 58.302 50.000 1.45 1.94 0.00 2.92
2544 3873 5.051641 GCTATAACGTGAATAGCGGCATATC 60.052 44.000 20.91 0.00 41.62 1.63
2545 3874 4.804139 GCTATAACGTGAATAGCGGCATAT 59.196 41.667 20.91 1.43 41.62 1.78
2546 3875 4.171005 GCTATAACGTGAATAGCGGCATA 58.829 43.478 20.91 0.00 41.62 3.14
2547 3876 2.993899 GCTATAACGTGAATAGCGGCAT 59.006 45.455 20.91 0.00 41.62 4.40
2548 3877 2.400399 GCTATAACGTGAATAGCGGCA 58.600 47.619 20.91 0.00 41.62 5.69
2553 3882 7.556433 GTTACAGCAAGCTATAACGTGAATAG 58.444 38.462 7.40 11.91 28.25 1.73
2554 3883 7.459394 GTTACAGCAAGCTATAACGTGAATA 57.541 36.000 7.40 0.00 28.25 1.75
2555 3884 6.345920 GTTACAGCAAGCTATAACGTGAAT 57.654 37.500 7.40 0.00 28.25 2.57
2556 3885 5.773239 GTTACAGCAAGCTATAACGTGAA 57.227 39.130 7.40 0.00 28.25 3.18
2561 3890 3.587403 GCCGTTACAGCAAGCTATAAC 57.413 47.619 12.05 12.05 33.86 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.