Multiple sequence alignment - TraesCS7B01G236000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G236000 chr7B 100.000 2480 0 0 1 2480 440009805 440012284 0.000000e+00 4580.0
1 TraesCS7B01G236000 chr7B 80.864 162 22 7 1261 1416 440332444 440332602 4.330000e-23 119.0
2 TraesCS7B01G236000 chr7B 100.000 62 0 0 534 595 440010298 440010359 5.600000e-22 115.0
3 TraesCS7B01G236000 chr7B 100.000 62 0 0 494 555 440010338 440010399 5.600000e-22 115.0
4 TraesCS7B01G236000 chr7B 78.289 152 23 9 1270 1416 440242710 440242856 3.400000e-14 89.8
5 TraesCS7B01G236000 chr7A 93.406 1107 47 13 567 1662 510149076 510147985 0.000000e+00 1616.0
6 TraesCS7B01G236000 chr7A 94.486 399 13 6 1 399 510154470 510154081 7.590000e-170 606.0
7 TraesCS7B01G236000 chr7A 93.985 399 15 6 1 399 510152771 510152382 1.640000e-166 595.0
8 TraesCS7B01G236000 chr7A 95.000 120 5 1 2362 2480 510147937 510147818 1.170000e-43 187.0
9 TraesCS7B01G236000 chr7A 96.078 102 1 2 395 496 510152208 510152110 1.970000e-36 163.0
10 TraesCS7B01G236000 chr7A 80.368 163 21 9 1261 1416 509650994 509650836 2.020000e-21 113.0
11 TraesCS7B01G236000 chr7A 80.435 138 21 5 1282 1416 509760132 509759998 1.570000e-17 100.0
12 TraesCS7B01G236000 chr7A 79.562 137 24 4 1282 1416 509724509 509724375 7.300000e-16 95.3
13 TraesCS7B01G236000 chr7A 100.000 29 0 0 527 555 510149076 510149048 1.000000e-03 54.7
14 TraesCS7B01G236000 chr7D 90.957 1128 54 17 563 1662 422952007 422953114 0.000000e+00 1474.0
15 TraesCS7B01G236000 chr7D 93.197 294 18 2 1738 2030 422953142 422953434 4.900000e-117 431.0
16 TraesCS7B01G236000 chr7D 90.179 224 20 2 2259 2480 422953553 422953776 8.680000e-75 291.0
17 TraesCS7B01G236000 chr7D 89.431 123 11 2 279 399 83615420 83615298 1.190000e-33 154.0
18 TraesCS7B01G236000 chr7D 80.000 150 24 5 1270 1416 423412577 423412723 3.370000e-19 106.0
19 TraesCS7B01G236000 chr7D 77.987 159 29 5 1261 1416 423404596 423404751 7.300000e-16 95.3
20 TraesCS7B01G236000 chr1D 80.827 266 47 3 5 270 469389140 469389401 3.230000e-49 206.0
21 TraesCS7B01G236000 chr1D 75.802 405 62 20 24 399 246964506 246964903 3.280000e-39 172.0
22 TraesCS7B01G236000 chr5A 76.557 273 51 10 5 273 482394404 482394141 1.200000e-28 137.0
23 TraesCS7B01G236000 chr5A 92.982 57 4 0 409 465 619480799 619480855 1.580000e-12 84.2
24 TraesCS7B01G236000 chr5D 86.916 107 11 3 281 386 464144383 464144279 1.560000e-22 117.0
25 TraesCS7B01G236000 chr5D 82.955 88 15 0 409 496 225526778 225526691 2.040000e-11 80.5
26 TraesCS7B01G236000 chr5B 77.778 171 29 8 1 167 490755962 490756127 2.030000e-16 97.1
27 TraesCS7B01G236000 chr3B 96.296 54 1 1 411 464 5528891 5528839 1.220000e-13 87.9
28 TraesCS7B01G236000 chr3B 85.484 62 8 1 405 465 822255570 822255509 2.060000e-06 63.9
29 TraesCS7B01G236000 chr3B 85.484 62 8 1 405 465 822358494 822358433 2.060000e-06 63.9
30 TraesCS7B01G236000 chr3B 85.484 62 8 1 402 462 825192684 825192745 2.060000e-06 63.9
31 TraesCS7B01G236000 chrUn 85.484 62 8 1 405 465 283465070 283465009 2.060000e-06 63.9
32 TraesCS7B01G236000 chrUn 85.484 62 8 1 402 462 333372207 333372268 2.060000e-06 63.9
33 TraesCS7B01G236000 chr1A 83.824 68 10 1 24 91 300757300 300757234 2.060000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G236000 chr7B 440009805 440012284 2479 False 1603.333333 4580 100.000000 1 2480 3 chr7B.!!$F3 2479
1 TraesCS7B01G236000 chr7A 510147818 510154470 6652 True 536.950000 1616 95.492500 1 2480 6 chr7A.!!$R4 2479
2 TraesCS7B01G236000 chr7D 422952007 422953776 1769 False 732.000000 1474 91.444333 563 2480 3 chr7D.!!$F3 1917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 5809 0.248825 CGTCGGCTCTCATTCCTCTG 60.249 60.0 0.0 0.0 0.0 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2046 6928 0.03779 ACAGCGAAACTCCAGAGAGC 60.038 55.0 0.7 1.96 44.65 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 130 2.135139 GACATTCAACACGAGTGCTCA 58.865 47.619 2.76 0.00 34.79 4.26
136 137 0.681733 ACACGAGTGCTCATCCAACT 59.318 50.000 2.76 0.00 0.00 3.16
193 194 2.813754 TCTCATTCTGAAAGCCCAAACG 59.186 45.455 0.00 0.00 0.00 3.60
195 196 2.552315 TCATTCTGAAAGCCCAAACGAC 59.448 45.455 0.00 0.00 0.00 4.34
275 276 1.067915 GCCCACAGAATTGCGCTAAAA 60.068 47.619 9.73 0.00 0.00 1.52
277 278 2.986479 CCCACAGAATTGCGCTAAAAAC 59.014 45.455 9.73 0.00 0.00 2.43
278 279 3.305335 CCCACAGAATTGCGCTAAAAACT 60.305 43.478 9.73 0.00 0.00 2.66
279 280 3.914364 CCACAGAATTGCGCTAAAAACTC 59.086 43.478 9.73 0.00 0.00 3.01
280 281 3.914364 CACAGAATTGCGCTAAAAACTCC 59.086 43.478 9.73 0.00 0.00 3.85
281 282 3.568007 ACAGAATTGCGCTAAAAACTCCA 59.432 39.130 9.73 0.00 0.00 3.86
282 283 4.037446 ACAGAATTGCGCTAAAAACTCCAA 59.963 37.500 9.73 0.00 0.00 3.53
283 284 4.618489 CAGAATTGCGCTAAAAACTCCAAG 59.382 41.667 9.73 0.00 0.00 3.61
284 285 2.415697 TTGCGCTAAAAACTCCAAGC 57.584 45.000 9.73 0.00 0.00 4.01
285 286 1.313772 TGCGCTAAAAACTCCAAGCA 58.686 45.000 9.73 0.00 34.60 3.91
286 287 1.678627 TGCGCTAAAAACTCCAAGCAA 59.321 42.857 9.73 0.00 34.60 3.91
287 288 2.051423 GCGCTAAAAACTCCAAGCAAC 58.949 47.619 0.00 0.00 34.60 4.17
288 289 2.661594 CGCTAAAAACTCCAAGCAACC 58.338 47.619 0.00 0.00 34.60 3.77
289 290 2.293399 CGCTAAAAACTCCAAGCAACCT 59.707 45.455 0.00 0.00 34.60 3.50
290 291 3.243401 CGCTAAAAACTCCAAGCAACCTT 60.243 43.478 0.00 0.00 34.60 3.50
291 292 4.693283 GCTAAAAACTCCAAGCAACCTTT 58.307 39.130 0.00 0.00 35.05 3.11
292 293 5.116180 GCTAAAAACTCCAAGCAACCTTTT 58.884 37.500 0.00 0.00 35.05 2.27
317 318 4.111916 CCCAATTTGATTCCATTGCGTAC 58.888 43.478 0.00 0.00 0.00 3.67
375 2074 0.540365 CCACTGTTCCCATGCAACCT 60.540 55.000 0.00 0.00 0.00 3.50
496 2372 4.998033 TCATAACAACGCACAAGGTATCAA 59.002 37.500 0.00 0.00 0.00 2.57
497 2373 5.470437 TCATAACAACGCACAAGGTATCAAA 59.530 36.000 0.00 0.00 0.00 2.69
498 2374 3.896648 ACAACGCACAAGGTATCAAAG 57.103 42.857 0.00 0.00 0.00 2.77
499 2375 2.031157 ACAACGCACAAGGTATCAAAGC 60.031 45.455 0.00 0.00 0.00 3.51
500 2376 2.185004 ACGCACAAGGTATCAAAGCT 57.815 45.000 0.00 0.00 37.60 3.74
502 2378 2.884639 ACGCACAAGGTATCAAAGCTTT 59.115 40.909 5.69 5.69 43.37 3.51
503 2379 3.317993 ACGCACAAGGTATCAAAGCTTTT 59.682 39.130 9.53 0.00 43.37 2.27
504 2380 4.517453 ACGCACAAGGTATCAAAGCTTTTA 59.483 37.500 9.53 1.36 43.37 1.52
505 2381 4.851558 CGCACAAGGTATCAAAGCTTTTAC 59.148 41.667 9.53 10.53 43.37 2.01
506 2382 5.161358 GCACAAGGTATCAAAGCTTTTACC 58.839 41.667 23.94 23.94 43.37 2.85
507 2383 5.048013 GCACAAGGTATCAAAGCTTTTACCT 60.048 40.000 26.67 26.67 43.37 3.08
508 2384 6.612306 CACAAGGTATCAAAGCTTTTACCTC 58.388 40.000 29.93 13.91 43.37 3.85
510 2386 6.948309 ACAAGGTATCAAAGCTTTTACCTCAT 59.052 34.615 29.93 21.96 43.37 2.90
511 2387 7.094205 ACAAGGTATCAAAGCTTTTACCTCATG 60.094 37.037 29.93 27.00 43.37 3.07
512 2388 6.485171 AGGTATCAAAGCTTTTACCTCATGT 58.515 36.000 26.67 12.38 40.24 3.21
513 2389 6.948309 AGGTATCAAAGCTTTTACCTCATGTT 59.052 34.615 26.67 11.84 40.24 2.71
514 2390 7.451566 AGGTATCAAAGCTTTTACCTCATGTTT 59.548 33.333 26.67 11.30 40.24 2.83
515 2391 8.088365 GGTATCAAAGCTTTTACCTCATGTTTT 58.912 33.333 24.02 0.00 32.95 2.43
518 2394 7.430441 TCAAAGCTTTTACCTCATGTTTTACC 58.570 34.615 9.53 0.00 0.00 2.85
519 2395 7.286775 TCAAAGCTTTTACCTCATGTTTTACCT 59.713 33.333 9.53 0.00 0.00 3.08
520 2396 6.819397 AGCTTTTACCTCATGTTTTACCTC 57.181 37.500 0.00 0.00 0.00 3.85
521 2397 6.303839 AGCTTTTACCTCATGTTTTACCTCA 58.696 36.000 0.00 0.00 0.00 3.86
523 2840 8.107095 AGCTTTTACCTCATGTTTTACCTCATA 58.893 33.333 0.00 0.00 0.00 2.15
551 2868 7.951530 AAAATGTCAAAGCTTTTACCTCATG 57.048 32.000 18.42 2.93 0.00 3.07
553 2870 6.655078 ATGTCAAAGCTTTTACCTCATGTT 57.345 33.333 18.42 0.00 0.00 2.71
555 2872 6.872920 TGTCAAAGCTTTTACCTCATGTTTT 58.127 32.000 18.42 0.00 0.00 2.43
557 2874 7.918562 TGTCAAAGCTTTTACCTCATGTTTTAC 59.081 33.333 18.42 0.00 0.00 2.01
561 2878 6.303839 AGCTTTTACCTCATGTTTTACCTCA 58.696 36.000 0.00 0.00 0.00 3.86
736 5597 9.617975 ACAAAGTGTCTATTACTAAACTCGTAC 57.382 33.333 0.00 0.00 0.00 3.67
804 5669 7.101652 TCTAGGAGTACAAGTCAATGCTAAG 57.898 40.000 0.00 0.00 0.00 2.18
814 5679 4.330250 AGTCAATGCTAAGTTGCTGACAT 58.670 39.130 15.35 0.00 39.24 3.06
879 5744 0.743097 GTCGCCACCGTACCTTCTAT 59.257 55.000 0.00 0.00 35.54 1.98
880 5745 0.742505 TCGCCACCGTACCTTCTATG 59.257 55.000 0.00 0.00 35.54 2.23
888 5753 5.417894 CCACCGTACCTTCTATGCATATCTA 59.582 44.000 6.92 0.00 0.00 1.98
937 5809 0.248825 CGTCGGCTCTCATTCCTCTG 60.249 60.000 0.00 0.00 0.00 3.35
941 5813 1.418334 GGCTCTCATTCCTCTGCCTA 58.582 55.000 0.00 0.00 37.58 3.93
945 5817 2.025155 TCTCATTCCTCTGCCTACGAC 58.975 52.381 0.00 0.00 0.00 4.34
946 5818 2.028130 CTCATTCCTCTGCCTACGACT 58.972 52.381 0.00 0.00 0.00 4.18
947 5819 3.118000 TCTCATTCCTCTGCCTACGACTA 60.118 47.826 0.00 0.00 0.00 2.59
948 5820 2.950309 TCATTCCTCTGCCTACGACTAC 59.050 50.000 0.00 0.00 0.00 2.73
949 5821 1.376543 TTCCTCTGCCTACGACTACG 58.623 55.000 0.00 0.00 45.75 3.51
950 5822 0.538584 TCCTCTGCCTACGACTACGA 59.461 55.000 0.00 0.00 42.66 3.43
954 5826 3.193263 CTCTGCCTACGACTACGAAGTA 58.807 50.000 0.00 0.00 45.11 2.24
1137 6009 2.480416 CGTCGCCTTCTTCTTCTGCTAT 60.480 50.000 0.00 0.00 0.00 2.97
1504 6376 3.423154 GCTGGTCGCCGAAGTTGG 61.423 66.667 0.00 0.00 0.00 3.77
1552 6424 0.599991 TGTAGCTTGTCGCCTGTGTG 60.600 55.000 0.00 0.00 40.39 3.82
1553 6425 0.600255 GTAGCTTGTCGCCTGTGTGT 60.600 55.000 0.00 0.00 40.39 3.72
1554 6426 0.105964 TAGCTTGTCGCCTGTGTGTT 59.894 50.000 0.00 0.00 40.39 3.32
1555 6427 0.105964 AGCTTGTCGCCTGTGTGTTA 59.894 50.000 0.00 0.00 40.39 2.41
1556 6428 0.512952 GCTTGTCGCCTGTGTGTTAG 59.487 55.000 0.00 0.00 0.00 2.34
1557 6429 1.865865 CTTGTCGCCTGTGTGTTAGT 58.134 50.000 0.00 0.00 0.00 2.24
1560 6432 1.411246 TGTCGCCTGTGTGTTAGTTCT 59.589 47.619 0.00 0.00 0.00 3.01
1561 6433 1.792949 GTCGCCTGTGTGTTAGTTCTG 59.207 52.381 0.00 0.00 0.00 3.02
1562 6434 1.684450 TCGCCTGTGTGTTAGTTCTGA 59.316 47.619 0.00 0.00 0.00 3.27
1563 6435 2.299013 TCGCCTGTGTGTTAGTTCTGAT 59.701 45.455 0.00 0.00 0.00 2.90
1564 6436 2.668457 CGCCTGTGTGTTAGTTCTGATC 59.332 50.000 0.00 0.00 0.00 2.92
1607 6479 9.369904 GTAACTTGTAAATTCCTCCGTATACAA 57.630 33.333 3.32 0.00 33.61 2.41
1610 6482 7.551617 ACTTGTAAATTCCTCCGTATACAAAGG 59.448 37.037 12.39 12.39 34.11 3.11
1618 6490 7.385778 TCCTCCGTATACAAAGGAAAAATTG 57.614 36.000 16.99 0.00 35.12 2.32
1643 6515 2.038689 TGGGTACAACGGATACTGCAAA 59.961 45.455 0.00 0.00 0.00 3.68
1644 6516 2.676342 GGGTACAACGGATACTGCAAAG 59.324 50.000 0.00 0.00 0.00 2.77
1658 6530 0.107945 GCAAAGATCACCGCTCCTCT 60.108 55.000 0.00 0.00 0.00 3.69
1662 6534 0.534412 AGATCACCGCTCCTCTTGTG 59.466 55.000 0.00 0.00 0.00 3.33
1663 6535 0.247736 GATCACCGCTCCTCTTGTGT 59.752 55.000 0.00 0.00 0.00 3.72
1664 6536 1.476891 GATCACCGCTCCTCTTGTGTA 59.523 52.381 0.00 0.00 0.00 2.90
1665 6537 1.557099 TCACCGCTCCTCTTGTGTAT 58.443 50.000 0.00 0.00 0.00 2.29
1666 6538 1.899814 TCACCGCTCCTCTTGTGTATT 59.100 47.619 0.00 0.00 0.00 1.89
1675 6556 5.682730 GCTCCTCTTGTGTATTACTCCCTTC 60.683 48.000 0.00 0.00 0.00 3.46
1682 6563 4.530553 TGTGTATTACTCCCTTCAAGAGCA 59.469 41.667 0.00 0.00 34.56 4.26
1690 6571 4.534103 ACTCCCTTCAAGAGCATAGAAGTT 59.466 41.667 0.00 0.00 37.62 2.66
1691 6572 5.091261 TCCCTTCAAGAGCATAGAAGTTC 57.909 43.478 0.00 0.00 37.62 3.01
1692 6573 3.868077 CCCTTCAAGAGCATAGAAGTTCG 59.132 47.826 0.00 0.00 37.62 3.95
1693 6574 4.382040 CCCTTCAAGAGCATAGAAGTTCGA 60.382 45.833 0.00 0.00 37.62 3.71
1695 6576 5.639506 CCTTCAAGAGCATAGAAGTTCGAAA 59.360 40.000 0.00 0.00 37.62 3.46
1697 6578 7.307989 CCTTCAAGAGCATAGAAGTTCGAAAAA 60.308 37.037 0.00 0.00 37.62 1.94
1720 6601 7.913674 AAAAGAGAGCATAGAAGTAAACAGG 57.086 36.000 0.00 0.00 0.00 4.00
1721 6602 6.613153 AAGAGAGCATAGAAGTAAACAGGT 57.387 37.500 0.00 0.00 0.00 4.00
1722 6603 6.613153 AGAGAGCATAGAAGTAAACAGGTT 57.387 37.500 0.00 0.00 0.00 3.50
1723 6604 7.719871 AGAGAGCATAGAAGTAAACAGGTTA 57.280 36.000 0.00 0.00 0.00 2.85
1724 6605 8.135382 AGAGAGCATAGAAGTAAACAGGTTAA 57.865 34.615 0.00 0.00 0.00 2.01
1725 6606 8.594550 AGAGAGCATAGAAGTAAACAGGTTAAA 58.405 33.333 0.00 0.00 0.00 1.52
1726 6607 8.549338 AGAGCATAGAAGTAAACAGGTTAAAC 57.451 34.615 0.00 0.00 0.00 2.01
1727 6608 8.376270 AGAGCATAGAAGTAAACAGGTTAAACT 58.624 33.333 0.00 0.00 0.00 2.66
1728 6609 8.919777 AGCATAGAAGTAAACAGGTTAAACTT 57.080 30.769 10.73 10.73 33.99 2.66
1729 6610 9.000486 AGCATAGAAGTAAACAGGTTAAACTTC 58.000 33.333 21.16 21.16 41.31 3.01
1730 6611 8.780249 GCATAGAAGTAAACAGGTTAAACTTCA 58.220 33.333 25.82 18.14 42.28 3.02
1734 6615 8.890718 AGAAGTAAACAGGTTAAACTTCAGAAC 58.109 33.333 25.82 11.67 42.28 3.01
1735 6616 8.570068 AAGTAAACAGGTTAAACTTCAGAACA 57.430 30.769 0.00 0.00 28.71 3.18
1736 6617 7.982224 AGTAAACAGGTTAAACTTCAGAACAC 58.018 34.615 0.00 0.00 0.00 3.32
1737 6618 7.827729 AGTAAACAGGTTAAACTTCAGAACACT 59.172 33.333 0.00 0.00 0.00 3.55
1738 6619 9.101655 GTAAACAGGTTAAACTTCAGAACACTA 57.898 33.333 0.00 0.00 0.00 2.74
1739 6620 8.570068 AAACAGGTTAAACTTCAGAACACTAA 57.430 30.769 0.00 0.00 0.00 2.24
1759 6640 8.021396 ACACTAAAAGTTTCTAAATTCATCCGC 58.979 33.333 0.00 0.00 0.00 5.54
1823 6704 7.828712 TGCATCATCTAATTCAATTTGACACA 58.171 30.769 0.00 0.00 0.00 3.72
1824 6705 7.971722 TGCATCATCTAATTCAATTTGACACAG 59.028 33.333 0.00 0.00 0.00 3.66
1838 6719 3.256558 TGACACAGCTGATCGATCTTTG 58.743 45.455 25.02 20.41 0.00 2.77
1845 6726 5.879223 ACAGCTGATCGATCTTTGAATTCTT 59.121 36.000 25.02 2.93 0.00 2.52
1859 6740 9.130661 TCTTTGAATTCTTGAAGTCATTAACCA 57.869 29.630 13.09 0.00 0.00 3.67
1875 6756 0.253044 ACCAGCCGTATGATTGCACT 59.747 50.000 0.00 0.00 0.00 4.40
2018 6900 8.492673 AAAATGAATGATACTCTACAAAGCGA 57.507 30.769 0.00 0.00 0.00 4.93
2019 6901 8.492673 AAATGAATGATACTCTACAAAGCGAA 57.507 30.769 0.00 0.00 0.00 4.70
2020 6902 7.706281 ATGAATGATACTCTACAAAGCGAAG 57.294 36.000 0.00 0.00 0.00 3.79
2035 6917 2.268730 CGAAGCAGGCAAATCCTTTC 57.731 50.000 0.00 0.00 44.75 2.62
2036 6918 1.135286 CGAAGCAGGCAAATCCTTTCC 60.135 52.381 0.00 0.00 44.75 3.13
2037 6919 0.890683 AAGCAGGCAAATCCTTTCCG 59.109 50.000 0.00 0.00 44.75 4.30
2038 6920 0.967380 AGCAGGCAAATCCTTTCCGG 60.967 55.000 0.00 0.00 44.75 5.14
2039 6921 1.512694 CAGGCAAATCCTTTCCGGC 59.487 57.895 0.00 0.00 44.75 6.13
2040 6922 1.076549 AGGCAAATCCTTTCCGGCA 59.923 52.632 0.00 0.00 44.75 5.69
2041 6923 0.541764 AGGCAAATCCTTTCCGGCAA 60.542 50.000 0.00 0.00 44.75 4.52
2042 6924 0.320050 GGCAAATCCTTTCCGGCAAA 59.680 50.000 0.00 0.00 0.00 3.68
2043 6925 1.066215 GGCAAATCCTTTCCGGCAAAT 60.066 47.619 0.00 0.00 0.00 2.32
2044 6926 2.167487 GGCAAATCCTTTCCGGCAAATA 59.833 45.455 0.00 0.00 0.00 1.40
2045 6927 3.181466 GGCAAATCCTTTCCGGCAAATAT 60.181 43.478 0.00 0.00 0.00 1.28
2046 6928 3.803778 GCAAATCCTTTCCGGCAAATATG 59.196 43.478 0.00 0.00 0.00 1.78
2061 6943 5.401033 CAAATATGCTCTCTGGAGTTTCG 57.599 43.478 0.00 0.00 41.38 3.46
2062 6944 2.586258 TATGCTCTCTGGAGTTTCGC 57.414 50.000 0.00 0.00 41.38 4.70
2063 6945 0.901124 ATGCTCTCTGGAGTTTCGCT 59.099 50.000 0.00 0.00 41.38 4.93
2064 6946 0.037882 TGCTCTCTGGAGTTTCGCTG 60.038 55.000 0.00 0.00 41.38 5.18
2065 6947 0.037790 GCTCTCTGGAGTTTCGCTGT 60.038 55.000 0.00 0.00 41.38 4.40
2066 6948 1.202582 GCTCTCTGGAGTTTCGCTGTA 59.797 52.381 0.00 0.00 41.38 2.74
2067 6949 2.352814 GCTCTCTGGAGTTTCGCTGTAA 60.353 50.000 0.00 0.00 41.38 2.41
2068 6950 3.677424 GCTCTCTGGAGTTTCGCTGTAAT 60.677 47.826 0.00 0.00 41.38 1.89
2069 6951 4.109050 CTCTCTGGAGTTTCGCTGTAATC 58.891 47.826 0.00 0.00 35.03 1.75
2070 6952 3.764434 TCTCTGGAGTTTCGCTGTAATCT 59.236 43.478 0.00 0.00 0.00 2.40
2071 6953 4.109050 CTCTGGAGTTTCGCTGTAATCTC 58.891 47.826 0.00 0.00 0.00 2.75
2072 6954 3.764434 TCTGGAGTTTCGCTGTAATCTCT 59.236 43.478 0.00 0.00 0.00 3.10
2073 6955 4.109050 CTGGAGTTTCGCTGTAATCTCTC 58.891 47.826 0.00 0.00 0.00 3.20
2074 6956 3.764434 TGGAGTTTCGCTGTAATCTCTCT 59.236 43.478 0.00 0.00 0.00 3.10
2075 6957 4.220821 TGGAGTTTCGCTGTAATCTCTCTT 59.779 41.667 0.00 0.00 0.00 2.85
2076 6958 5.172205 GGAGTTTCGCTGTAATCTCTCTTT 58.828 41.667 0.00 0.00 0.00 2.52
2077 6959 5.639931 GGAGTTTCGCTGTAATCTCTCTTTT 59.360 40.000 0.00 0.00 0.00 2.27
2078 6960 6.183360 GGAGTTTCGCTGTAATCTCTCTTTTC 60.183 42.308 0.00 0.00 0.00 2.29
2079 6961 6.459923 AGTTTCGCTGTAATCTCTCTTTTCT 58.540 36.000 0.00 0.00 0.00 2.52
2080 6962 6.588373 AGTTTCGCTGTAATCTCTCTTTTCTC 59.412 38.462 0.00 0.00 0.00 2.87
2081 6963 4.663166 TCGCTGTAATCTCTCTTTTCTCG 58.337 43.478 0.00 0.00 0.00 4.04
2082 6964 4.395231 TCGCTGTAATCTCTCTTTTCTCGA 59.605 41.667 0.00 0.00 0.00 4.04
2083 6965 4.732923 CGCTGTAATCTCTCTTTTCTCGAG 59.267 45.833 5.93 5.93 0.00 4.04
2084 6966 4.502645 GCTGTAATCTCTCTTTTCTCGAGC 59.497 45.833 7.81 0.00 0.00 5.03
2085 6967 5.644977 TGTAATCTCTCTTTTCTCGAGCA 57.355 39.130 7.81 0.00 0.00 4.26
2086 6968 5.645624 TGTAATCTCTCTTTTCTCGAGCAG 58.354 41.667 7.81 3.63 0.00 4.24
2087 6969 3.799281 ATCTCTCTTTTCTCGAGCAGG 57.201 47.619 7.81 0.00 0.00 4.85
2088 6970 1.203523 TCTCTCTTTTCTCGAGCAGGC 59.796 52.381 7.81 0.00 0.00 4.85
2089 6971 0.969149 TCTCTTTTCTCGAGCAGGCA 59.031 50.000 7.81 0.00 0.00 4.75
2090 6972 1.344438 TCTCTTTTCTCGAGCAGGCAA 59.656 47.619 7.81 0.00 0.00 4.52
2091 6973 2.146342 CTCTTTTCTCGAGCAGGCAAA 58.854 47.619 7.81 0.00 0.00 3.68
2092 6974 2.746362 CTCTTTTCTCGAGCAGGCAAAT 59.254 45.455 7.81 0.00 0.00 2.32
2093 6975 2.744202 TCTTTTCTCGAGCAGGCAAATC 59.256 45.455 7.81 0.00 0.00 2.17
2094 6976 2.183478 TTTCTCGAGCAGGCAAATCA 57.817 45.000 7.81 0.00 0.00 2.57
2095 6977 2.408271 TTCTCGAGCAGGCAAATCAT 57.592 45.000 7.81 0.00 0.00 2.45
2096 6978 2.408271 TCTCGAGCAGGCAAATCATT 57.592 45.000 7.81 0.00 0.00 2.57
2097 6979 2.011947 TCTCGAGCAGGCAAATCATTG 58.988 47.619 7.81 0.00 39.65 2.82
2098 6980 1.741706 CTCGAGCAGGCAAATCATTGT 59.258 47.619 0.00 0.00 38.85 2.71
2099 6981 2.161855 TCGAGCAGGCAAATCATTGTT 58.838 42.857 0.00 0.00 38.85 2.83
2100 6982 2.557924 TCGAGCAGGCAAATCATTGTTT 59.442 40.909 0.00 0.00 38.85 2.83
2101 6983 2.919229 CGAGCAGGCAAATCATTGTTTC 59.081 45.455 0.00 0.00 38.85 2.78
2102 6984 3.256558 GAGCAGGCAAATCATTGTTTCC 58.743 45.455 0.00 0.00 38.85 3.13
2103 6985 2.901839 AGCAGGCAAATCATTGTTTCCT 59.098 40.909 0.00 0.00 38.85 3.36
2104 6986 3.056322 AGCAGGCAAATCATTGTTTCCTC 60.056 43.478 0.00 0.00 38.85 3.71
2105 6987 3.853475 CAGGCAAATCATTGTTTCCTCC 58.147 45.455 0.00 0.00 38.85 4.30
2106 6988 3.512724 CAGGCAAATCATTGTTTCCTCCT 59.487 43.478 0.00 0.00 38.85 3.69
2107 6989 4.020839 CAGGCAAATCATTGTTTCCTCCTT 60.021 41.667 0.00 0.00 38.85 3.36
2108 6990 4.594491 AGGCAAATCATTGTTTCCTCCTTT 59.406 37.500 0.00 0.00 38.85 3.11
2109 6991 4.931601 GGCAAATCATTGTTTCCTCCTTTC 59.068 41.667 0.00 0.00 38.85 2.62
2110 6992 5.279657 GGCAAATCATTGTTTCCTCCTTTCT 60.280 40.000 0.00 0.00 38.85 2.52
2111 6993 5.636543 GCAAATCATTGTTTCCTCCTTTCTG 59.363 40.000 0.00 0.00 38.85 3.02
2112 6994 5.990120 AATCATTGTTTCCTCCTTTCTGG 57.010 39.130 0.00 0.00 37.10 3.86
2113 6995 4.722526 TCATTGTTTCCTCCTTTCTGGA 57.277 40.909 0.00 0.00 43.86 3.86
2122 7004 2.543777 TCCTTTCTGGAGTTCCGTTG 57.456 50.000 0.00 0.00 40.56 4.10
2123 7005 1.766496 TCCTTTCTGGAGTTCCGTTGT 59.234 47.619 0.00 0.00 40.56 3.32
2124 7006 2.967201 TCCTTTCTGGAGTTCCGTTGTA 59.033 45.455 0.00 0.00 40.56 2.41
2125 7007 3.388676 TCCTTTCTGGAGTTCCGTTGTAA 59.611 43.478 0.00 0.00 40.56 2.41
2126 7008 4.041198 TCCTTTCTGGAGTTCCGTTGTAAT 59.959 41.667 0.00 0.00 40.56 1.89
2127 7009 4.392138 CCTTTCTGGAGTTCCGTTGTAATC 59.608 45.833 0.00 0.00 39.43 1.75
2128 7010 3.604875 TCTGGAGTTCCGTTGTAATCC 57.395 47.619 0.00 0.00 39.43 3.01
2129 7011 2.235402 TCTGGAGTTCCGTTGTAATCCC 59.765 50.000 0.00 0.00 39.43 3.85
2130 7012 2.236395 CTGGAGTTCCGTTGTAATCCCT 59.764 50.000 0.00 0.00 39.43 4.20
2131 7013 2.235402 TGGAGTTCCGTTGTAATCCCTC 59.765 50.000 0.00 0.00 39.43 4.30
2132 7014 2.500504 GGAGTTCCGTTGTAATCCCTCT 59.499 50.000 0.00 0.00 0.00 3.69
2133 7015 3.055312 GGAGTTCCGTTGTAATCCCTCTT 60.055 47.826 0.00 0.00 0.00 2.85
2134 7016 4.565028 GGAGTTCCGTTGTAATCCCTCTTT 60.565 45.833 0.00 0.00 0.00 2.52
2135 7017 4.981812 AGTTCCGTTGTAATCCCTCTTTT 58.018 39.130 0.00 0.00 0.00 2.27
2136 7018 5.382616 AGTTCCGTTGTAATCCCTCTTTTT 58.617 37.500 0.00 0.00 0.00 1.94
2137 7019 6.536447 AGTTCCGTTGTAATCCCTCTTTTTA 58.464 36.000 0.00 0.00 0.00 1.52
2138 7020 6.429078 AGTTCCGTTGTAATCCCTCTTTTTAC 59.571 38.462 0.00 0.00 0.00 2.01
2139 7021 5.247862 TCCGTTGTAATCCCTCTTTTTACC 58.752 41.667 0.00 0.00 0.00 2.85
2140 7022 5.005094 CCGTTGTAATCCCTCTTTTTACCA 58.995 41.667 0.00 0.00 0.00 3.25
2141 7023 5.106436 CCGTTGTAATCCCTCTTTTTACCAC 60.106 44.000 0.00 0.00 0.00 4.16
2142 7024 5.106436 CGTTGTAATCCCTCTTTTTACCACC 60.106 44.000 0.00 0.00 0.00 4.61
2143 7025 5.853572 TGTAATCCCTCTTTTTACCACCT 57.146 39.130 0.00 0.00 0.00 4.00
2144 7026 5.566469 TGTAATCCCTCTTTTTACCACCTG 58.434 41.667 0.00 0.00 0.00 4.00
2145 7027 5.311121 TGTAATCCCTCTTTTTACCACCTGA 59.689 40.000 0.00 0.00 0.00 3.86
2146 7028 5.536497 AATCCCTCTTTTTACCACCTGAT 57.464 39.130 0.00 0.00 0.00 2.90
2147 7029 4.569719 TCCCTCTTTTTACCACCTGATC 57.430 45.455 0.00 0.00 0.00 2.92
2148 7030 3.913799 TCCCTCTTTTTACCACCTGATCA 59.086 43.478 0.00 0.00 0.00 2.92
2149 7031 4.010349 CCCTCTTTTTACCACCTGATCAC 58.990 47.826 0.00 0.00 0.00 3.06
2150 7032 4.010349 CCTCTTTTTACCACCTGATCACC 58.990 47.826 0.00 0.00 0.00 4.02
2151 7033 4.263506 CCTCTTTTTACCACCTGATCACCT 60.264 45.833 0.00 0.00 0.00 4.00
2152 7034 5.045869 CCTCTTTTTACCACCTGATCACCTA 60.046 44.000 0.00 0.00 0.00 3.08
2153 7035 6.442541 TCTTTTTACCACCTGATCACCTAA 57.557 37.500 0.00 0.00 0.00 2.69
2154 7036 7.027874 TCTTTTTACCACCTGATCACCTAAT 57.972 36.000 0.00 0.00 0.00 1.73
2155 7037 7.110155 TCTTTTTACCACCTGATCACCTAATC 58.890 38.462 0.00 0.00 0.00 1.75
2156 7038 6.381498 TTTTACCACCTGATCACCTAATCA 57.619 37.500 0.00 0.00 34.55 2.57
2157 7039 6.381498 TTTACCACCTGATCACCTAATCAA 57.619 37.500 0.00 0.00 35.32 2.57
2158 7040 4.927267 ACCACCTGATCACCTAATCAAA 57.073 40.909 0.00 0.00 35.32 2.69
2159 7041 5.456921 ACCACCTGATCACCTAATCAAAT 57.543 39.130 0.00 0.00 35.32 2.32
2160 7042 5.195940 ACCACCTGATCACCTAATCAAATG 58.804 41.667 0.00 0.00 35.32 2.32
2161 7043 5.195940 CCACCTGATCACCTAATCAAATGT 58.804 41.667 0.00 0.00 35.32 2.71
2162 7044 5.653769 CCACCTGATCACCTAATCAAATGTT 59.346 40.000 0.00 0.00 35.32 2.71
2163 7045 6.153340 CCACCTGATCACCTAATCAAATGTTT 59.847 38.462 0.00 0.00 35.32 2.83
2164 7046 7.309990 CCACCTGATCACCTAATCAAATGTTTT 60.310 37.037 0.00 0.00 35.32 2.43
2165 7047 8.090214 CACCTGATCACCTAATCAAATGTTTTT 58.910 33.333 0.00 0.00 35.32 1.94
2166 7048 8.306761 ACCTGATCACCTAATCAAATGTTTTTC 58.693 33.333 0.00 0.00 35.32 2.29
2167 7049 8.306038 CCTGATCACCTAATCAAATGTTTTTCA 58.694 33.333 0.00 0.00 35.32 2.69
2168 7050 9.865321 CTGATCACCTAATCAAATGTTTTTCAT 57.135 29.630 0.00 0.00 35.32 2.57
2172 7054 9.585099 TCACCTAATCAAATGTTTTTCATATGC 57.415 29.630 0.00 0.00 35.48 3.14
2173 7055 9.590451 CACCTAATCAAATGTTTTTCATATGCT 57.410 29.630 0.00 0.00 35.48 3.79
2174 7056 9.807649 ACCTAATCAAATGTTTTTCATATGCTC 57.192 29.630 0.00 0.00 35.48 4.26
2178 7060 8.697846 ATCAAATGTTTTTCATATGCTCTGTG 57.302 30.769 0.00 0.00 35.48 3.66
2179 7061 6.587226 TCAAATGTTTTTCATATGCTCTGTGC 59.413 34.615 0.00 0.00 37.77 4.57
2180 7062 5.909621 ATGTTTTTCATATGCTCTGTGCT 57.090 34.783 0.00 0.00 37.52 4.40
2181 7063 7.395190 AATGTTTTTCATATGCTCTGTGCTA 57.605 32.000 0.00 0.00 37.98 3.49
2182 7064 6.816134 TGTTTTTCATATGCTCTGTGCTAA 57.184 33.333 0.00 0.00 43.37 3.09
2183 7065 7.213216 TGTTTTTCATATGCTCTGTGCTAAA 57.787 32.000 0.00 0.00 43.37 1.85
2184 7066 7.829725 TGTTTTTCATATGCTCTGTGCTAAAT 58.170 30.769 0.00 0.00 43.37 1.40
2185 7067 7.970061 TGTTTTTCATATGCTCTGTGCTAAATC 59.030 33.333 0.00 0.00 43.37 2.17
2186 7068 7.628769 TTTTCATATGCTCTGTGCTAAATCA 57.371 32.000 0.00 0.00 43.37 2.57
2187 7069 7.628769 TTTCATATGCTCTGTGCTAAATCAA 57.371 32.000 0.00 0.00 43.37 2.57
2188 7070 7.812690 TTCATATGCTCTGTGCTAAATCAAT 57.187 32.000 0.00 0.00 43.37 2.57
2189 7071 7.198306 TCATATGCTCTGTGCTAAATCAATG 57.802 36.000 0.00 0.00 43.37 2.82
2190 7072 6.993902 TCATATGCTCTGTGCTAAATCAATGA 59.006 34.615 0.00 0.00 43.37 2.57
2191 7073 7.499895 TCATATGCTCTGTGCTAAATCAATGAA 59.500 33.333 0.00 0.00 43.37 2.57
2192 7074 5.556355 TGCTCTGTGCTAAATCAATGAAG 57.444 39.130 3.20 0.00 43.37 3.02
2193 7075 4.142534 TGCTCTGTGCTAAATCAATGAAGC 60.143 41.667 3.20 0.00 43.37 3.86
2194 7076 4.732938 GCTCTGTGCTAAATCAATGAAGCC 60.733 45.833 3.30 0.00 38.95 4.35
2195 7077 3.374988 TCTGTGCTAAATCAATGAAGCCG 59.625 43.478 3.30 0.00 33.99 5.52
2196 7078 2.423185 TGTGCTAAATCAATGAAGCCGG 59.577 45.455 0.00 0.00 33.99 6.13
2197 7079 2.423538 GTGCTAAATCAATGAAGCCGGT 59.576 45.455 1.90 0.00 33.99 5.28
2198 7080 2.423185 TGCTAAATCAATGAAGCCGGTG 59.577 45.455 1.90 0.00 33.99 4.94
2199 7081 2.682856 GCTAAATCAATGAAGCCGGTGA 59.317 45.455 1.90 0.00 0.00 4.02
2200 7082 3.128589 GCTAAATCAATGAAGCCGGTGAA 59.871 43.478 1.90 0.00 0.00 3.18
2201 7083 3.575965 AAATCAATGAAGCCGGTGAAC 57.424 42.857 1.90 0.00 0.00 3.18
2202 7084 1.463674 ATCAATGAAGCCGGTGAACC 58.536 50.000 1.90 0.00 0.00 3.62
2203 7085 0.400213 TCAATGAAGCCGGTGAACCT 59.600 50.000 1.90 0.00 0.00 3.50
2204 7086 1.626321 TCAATGAAGCCGGTGAACCTA 59.374 47.619 1.90 0.00 0.00 3.08
2205 7087 2.009774 CAATGAAGCCGGTGAACCTAG 58.990 52.381 1.90 0.00 0.00 3.02
2206 7088 1.568504 ATGAAGCCGGTGAACCTAGA 58.431 50.000 1.90 0.00 0.00 2.43
2207 7089 0.606604 TGAAGCCGGTGAACCTAGAC 59.393 55.000 1.90 0.00 0.00 2.59
2208 7090 0.606604 GAAGCCGGTGAACCTAGACA 59.393 55.000 1.90 0.00 0.00 3.41
2209 7091 1.207329 GAAGCCGGTGAACCTAGACAT 59.793 52.381 1.90 0.00 0.00 3.06
2210 7092 1.276622 AGCCGGTGAACCTAGACATT 58.723 50.000 1.90 0.00 0.00 2.71
2211 7093 1.628846 AGCCGGTGAACCTAGACATTT 59.371 47.619 1.90 0.00 0.00 2.32
2212 7094 2.007608 GCCGGTGAACCTAGACATTTC 58.992 52.381 1.90 0.00 0.00 2.17
2213 7095 2.614481 GCCGGTGAACCTAGACATTTCA 60.614 50.000 1.90 0.00 0.00 2.69
2214 7096 3.670625 CCGGTGAACCTAGACATTTCAA 58.329 45.455 0.00 0.00 31.21 2.69
2215 7097 4.069304 CCGGTGAACCTAGACATTTCAAA 58.931 43.478 0.00 0.00 31.21 2.69
2216 7098 4.517453 CCGGTGAACCTAGACATTTCAAAA 59.483 41.667 0.00 0.00 31.21 2.44
2217 7099 5.009210 CCGGTGAACCTAGACATTTCAAAAA 59.991 40.000 0.00 0.00 31.21 1.94
2218 7100 6.294508 CCGGTGAACCTAGACATTTCAAAAAT 60.295 38.462 0.00 0.00 31.21 1.82
2219 7101 7.094549 CCGGTGAACCTAGACATTTCAAAAATA 60.095 37.037 0.00 0.00 31.21 1.40
2220 7102 8.293867 CGGTGAACCTAGACATTTCAAAAATAA 58.706 33.333 0.00 0.00 31.21 1.40
2221 7103 9.974980 GGTGAACCTAGACATTTCAAAAATAAA 57.025 29.630 0.00 0.00 31.21 1.40
2249 7131 4.495349 CGAGCAGGCAAATTCTCTAACATG 60.495 45.833 0.00 0.00 0.00 3.21
2251 7133 4.397417 AGCAGGCAAATTCTCTAACATGAC 59.603 41.667 0.00 0.00 0.00 3.06
2253 7135 5.586243 GCAGGCAAATTCTCTAACATGACTA 59.414 40.000 0.00 0.00 0.00 2.59
2254 7136 6.261826 GCAGGCAAATTCTCTAACATGACTAT 59.738 38.462 0.00 0.00 0.00 2.12
2326 7307 9.791820 TCATAAATATTCATTTGAGTGCACAAG 57.208 29.630 21.04 1.79 35.88 3.16
2353 7334 9.452287 AATTGGAATCATAATTTTCAAACCCAG 57.548 29.630 0.00 0.00 0.00 4.45
2414 7397 7.830940 TTAGTGGCAGCAATCAAATAAAATG 57.169 32.000 0.00 0.00 0.00 2.32
2447 7430 3.025322 ACACTTTTGGGACCAACATGA 57.975 42.857 2.68 0.00 35.46 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.601903 GATGACGTGGTTGCTTGACAA 59.398 47.619 0.00 0.00 35.33 3.18
129 130 8.844244 GCATGAAGTCTAATCAAATAGTTGGAT 58.156 33.333 2.65 0.00 35.29 3.41
136 137 7.609760 ACAACGCATGAAGTCTAATCAAATA 57.390 32.000 0.00 0.00 0.00 1.40
185 186 3.500680 TGAGAAAATACAGTCGTTTGGGC 59.499 43.478 0.00 0.00 0.00 5.36
193 194 9.323985 AGAGAATGCTAATGAGAAAATACAGTC 57.676 33.333 0.00 0.00 0.00 3.51
195 196 9.932699 CAAGAGAATGCTAATGAGAAAATACAG 57.067 33.333 0.00 0.00 0.00 2.74
275 276 2.628178 GGCTAAAAGGTTGCTTGGAGTT 59.372 45.455 0.00 0.00 0.00 3.01
277 278 1.546029 GGGCTAAAAGGTTGCTTGGAG 59.454 52.381 0.00 0.00 0.00 3.86
278 279 1.133325 TGGGCTAAAAGGTTGCTTGGA 60.133 47.619 0.00 0.00 0.00 3.53
279 280 1.337118 TGGGCTAAAAGGTTGCTTGG 58.663 50.000 0.00 0.00 0.00 3.61
280 281 3.683365 ATTGGGCTAAAAGGTTGCTTG 57.317 42.857 0.00 0.00 0.00 4.01
281 282 4.102367 TCAAATTGGGCTAAAAGGTTGCTT 59.898 37.500 0.00 0.00 0.00 3.91
282 283 3.645687 TCAAATTGGGCTAAAAGGTTGCT 59.354 39.130 0.00 0.00 0.00 3.91
283 284 4.001618 TCAAATTGGGCTAAAAGGTTGC 57.998 40.909 0.00 0.00 0.00 4.17
284 285 5.643348 GGAATCAAATTGGGCTAAAAGGTTG 59.357 40.000 0.00 0.00 0.00 3.77
285 286 5.309282 TGGAATCAAATTGGGCTAAAAGGTT 59.691 36.000 0.00 0.00 0.00 3.50
286 287 4.843516 TGGAATCAAATTGGGCTAAAAGGT 59.156 37.500 0.00 0.00 0.00 3.50
287 288 5.419239 TGGAATCAAATTGGGCTAAAAGG 57.581 39.130 0.00 0.00 0.00 3.11
288 289 6.183360 GCAATGGAATCAAATTGGGCTAAAAG 60.183 38.462 9.10 0.00 34.90 2.27
289 290 5.647225 GCAATGGAATCAAATTGGGCTAAAA 59.353 36.000 9.10 0.00 34.90 1.52
290 291 5.184711 GCAATGGAATCAAATTGGGCTAAA 58.815 37.500 9.10 0.00 34.90 1.85
291 292 4.680172 CGCAATGGAATCAAATTGGGCTAA 60.680 41.667 10.39 0.00 39.08 3.09
292 293 3.181477 CGCAATGGAATCAAATTGGGCTA 60.181 43.478 10.39 0.00 39.08 3.93
317 318 7.856145 AAAAACTTGATGAGCTACCTCTATG 57.144 36.000 0.00 0.00 38.93 2.23
496 2372 6.775629 TGAGGTAAAACATGAGGTAAAAGCTT 59.224 34.615 0.00 0.00 0.00 3.74
497 2373 6.303839 TGAGGTAAAACATGAGGTAAAAGCT 58.696 36.000 0.00 0.00 0.00 3.74
498 2374 6.569179 TGAGGTAAAACATGAGGTAAAAGC 57.431 37.500 0.00 0.00 0.00 3.51
525 2842 9.474920 CATGAGGTAAAAGCTTTGACATTTTTA 57.525 29.630 24.99 9.26 0.00 1.52
532 2849 7.381408 GGTAAAACATGAGGTAAAAGCTTTGAC 59.619 37.037 17.29 17.29 0.00 3.18
533 2850 7.286775 AGGTAAAACATGAGGTAAAAGCTTTGA 59.713 33.333 13.54 1.16 0.00 2.69
538 2855 6.569179 TGAGGTAAAACATGAGGTAAAAGC 57.431 37.500 0.00 0.00 0.00 3.51
603 5443 2.613595 GCACCGAAGATGACATAATGCA 59.386 45.455 0.00 0.00 0.00 3.96
678 5518 6.647481 TCTGCACGCTAGTTGTTATAAAGAAA 59.353 34.615 0.00 0.00 0.00 2.52
736 5597 0.175989 GGAGGAGAGTTTACCGGCAG 59.824 60.000 0.00 0.00 0.00 4.85
804 5669 1.996292 TACTCGCAGATGTCAGCAAC 58.004 50.000 0.00 0.00 33.89 4.17
814 5679 3.973206 TGGGAGAATTTTACTCGCAGA 57.027 42.857 9.85 0.00 46.72 4.26
880 5745 4.574013 GGCCTTATCATGCAGTAGATATGC 59.426 45.833 0.00 13.97 44.11 3.14
888 5753 0.107456 CGAGGGCCTTATCATGCAGT 59.893 55.000 7.89 0.00 0.00 4.40
937 5809 2.555199 TCCTACTTCGTAGTCGTAGGC 58.445 52.381 0.00 0.00 44.58 3.93
941 5813 1.396301 CGCTTCCTACTTCGTAGTCGT 59.604 52.381 0.00 0.00 34.62 4.34
945 5817 0.591741 CGCCGCTTCCTACTTCGTAG 60.592 60.000 0.00 0.00 36.04 3.51
946 5818 1.026182 TCGCCGCTTCCTACTTCGTA 61.026 55.000 0.00 0.00 0.00 3.43
947 5819 1.870055 TTCGCCGCTTCCTACTTCGT 61.870 55.000 0.00 0.00 0.00 3.85
948 5820 0.734942 TTTCGCCGCTTCCTACTTCG 60.735 55.000 0.00 0.00 0.00 3.79
949 5821 1.000145 CTTTCGCCGCTTCCTACTTC 59.000 55.000 0.00 0.00 0.00 3.01
950 5822 0.320697 ACTTTCGCCGCTTCCTACTT 59.679 50.000 0.00 0.00 0.00 2.24
953 5825 0.606604 AAGACTTTCGCCGCTTCCTA 59.393 50.000 0.00 0.00 0.00 2.94
954 5826 0.670854 GAAGACTTTCGCCGCTTCCT 60.671 55.000 0.00 0.00 32.63 3.36
955 5827 1.636570 GGAAGACTTTCGCCGCTTCC 61.637 60.000 0.00 0.00 46.56 3.46
956 5828 0.949105 TGGAAGACTTTCGCCGCTTC 60.949 55.000 0.00 0.00 36.81 3.86
957 5829 0.534203 TTGGAAGACTTTCGCCGCTT 60.534 50.000 0.00 0.00 33.98 4.68
958 5830 0.951040 CTTGGAAGACTTTCGCCGCT 60.951 55.000 0.00 0.00 33.98 5.52
959 5831 1.497722 CTTGGAAGACTTTCGCCGC 59.502 57.895 0.00 0.00 33.98 6.53
997 5869 2.824041 CCCGAACGAAGCCATGGG 60.824 66.667 15.13 0.00 0.00 4.00
1120 5992 2.871633 GCTGATAGCAGAAGAAGAAGGC 59.128 50.000 13.26 0.00 45.17 4.35
1121 5993 4.370917 GAGCTGATAGCAGAAGAAGAAGG 58.629 47.826 13.26 0.00 45.56 3.46
1501 6373 2.671619 GCACCTTGCGGTAGCCAA 60.672 61.111 0.00 0.00 43.24 4.52
1552 6424 5.980116 ACATGCTGTATCGATCAGAACTAAC 59.020 40.000 21.53 6.43 35.20 2.34
1553 6425 6.149129 ACATGCTGTATCGATCAGAACTAA 57.851 37.500 21.53 7.53 35.20 2.24
1554 6426 5.774498 ACATGCTGTATCGATCAGAACTA 57.226 39.130 21.53 9.70 35.20 2.24
1555 6427 4.662468 ACATGCTGTATCGATCAGAACT 57.338 40.909 21.53 8.00 35.20 3.01
1556 6428 5.524284 ACTACATGCTGTATCGATCAGAAC 58.476 41.667 21.53 8.61 31.66 3.01
1557 6429 5.774498 ACTACATGCTGTATCGATCAGAA 57.226 39.130 21.53 15.08 31.66 3.02
1560 6432 5.262588 ACAACTACATGCTGTATCGATCA 57.737 39.130 0.00 0.00 31.66 2.92
1561 6433 6.918569 AGTTACAACTACATGCTGTATCGATC 59.081 38.462 0.00 0.00 37.52 3.69
1562 6434 6.806751 AGTTACAACTACATGCTGTATCGAT 58.193 36.000 2.16 2.16 37.52 3.59
1563 6435 6.203808 AGTTACAACTACATGCTGTATCGA 57.796 37.500 0.00 0.00 37.52 3.59
1564 6436 6.310467 ACAAGTTACAACTACATGCTGTATCG 59.690 38.462 0.00 0.00 38.57 2.92
1594 6466 6.943718 ACAATTTTTCCTTTGTATACGGAGGA 59.056 34.615 18.24 18.24 34.42 3.71
1607 6479 6.578944 GTTGTACCCAGAACAATTTTTCCTT 58.421 36.000 0.68 0.00 38.95 3.36
1610 6482 4.979815 CCGTTGTACCCAGAACAATTTTTC 59.020 41.667 0.00 0.00 38.95 2.29
1618 6490 3.518590 CAGTATCCGTTGTACCCAGAAC 58.481 50.000 0.00 0.00 0.00 3.01
1643 6515 0.534412 CACAAGAGGAGCGGTGATCT 59.466 55.000 0.00 0.00 33.16 2.75
1644 6516 0.247736 ACACAAGAGGAGCGGTGATC 59.752 55.000 0.00 0.00 35.33 2.92
1658 6530 5.012664 TGCTCTTGAAGGGAGTAATACACAA 59.987 40.000 0.00 0.00 33.73 3.33
1662 6534 7.291411 TCTATGCTCTTGAAGGGAGTAATAC 57.709 40.000 0.00 0.00 33.73 1.89
1663 6535 7.565398 ACTTCTATGCTCTTGAAGGGAGTAATA 59.435 37.037 0.00 0.00 39.95 0.98
1664 6536 6.385467 ACTTCTATGCTCTTGAAGGGAGTAAT 59.615 38.462 0.00 0.00 39.95 1.89
1665 6537 5.721960 ACTTCTATGCTCTTGAAGGGAGTAA 59.278 40.000 0.00 0.00 39.95 2.24
1666 6538 5.273208 ACTTCTATGCTCTTGAAGGGAGTA 58.727 41.667 0.00 0.00 39.95 2.59
1695 6576 7.939588 ACCTGTTTACTTCTATGCTCTCTTTTT 59.060 33.333 0.00 0.00 0.00 1.94
1697 6578 7.010339 ACCTGTTTACTTCTATGCTCTCTTT 57.990 36.000 0.00 0.00 0.00 2.52
1698 6579 6.613153 ACCTGTTTACTTCTATGCTCTCTT 57.387 37.500 0.00 0.00 0.00 2.85
1700 6581 8.657729 GTTTAACCTGTTTACTTCTATGCTCTC 58.342 37.037 0.00 0.00 0.00 3.20
1701 6582 8.376270 AGTTTAACCTGTTTACTTCTATGCTCT 58.624 33.333 0.00 0.00 0.00 4.09
1702 6583 8.549338 AGTTTAACCTGTTTACTTCTATGCTC 57.451 34.615 0.00 0.00 0.00 4.26
1703 6584 8.919777 AAGTTTAACCTGTTTACTTCTATGCT 57.080 30.769 0.00 0.00 0.00 3.79
1704 6585 8.780249 TGAAGTTTAACCTGTTTACTTCTATGC 58.220 33.333 23.37 10.06 40.17 3.14
1708 6589 8.890718 GTTCTGAAGTTTAACCTGTTTACTTCT 58.109 33.333 23.37 5.02 40.17 2.85
1709 6590 8.671028 TGTTCTGAAGTTTAACCTGTTTACTTC 58.329 33.333 19.87 19.87 40.06 3.01
1710 6591 8.456471 GTGTTCTGAAGTTTAACCTGTTTACTT 58.544 33.333 8.87 8.87 32.60 2.24
1711 6592 7.827729 AGTGTTCTGAAGTTTAACCTGTTTACT 59.172 33.333 0.00 0.00 0.00 2.24
1712 6593 7.982224 AGTGTTCTGAAGTTTAACCTGTTTAC 58.018 34.615 0.00 0.00 0.00 2.01
1713 6594 9.669887 TTAGTGTTCTGAAGTTTAACCTGTTTA 57.330 29.630 0.00 0.00 0.00 2.01
1714 6595 8.570068 TTAGTGTTCTGAAGTTTAACCTGTTT 57.430 30.769 0.00 0.00 0.00 2.83
1715 6596 8.570068 TTTAGTGTTCTGAAGTTTAACCTGTT 57.430 30.769 0.00 0.00 0.00 3.16
1716 6597 8.570068 TTTTAGTGTTCTGAAGTTTAACCTGT 57.430 30.769 0.00 0.00 0.00 4.00
1717 6598 8.674607 ACTTTTAGTGTTCTGAAGTTTAACCTG 58.325 33.333 0.00 0.00 31.93 4.00
1718 6599 8.803397 ACTTTTAGTGTTCTGAAGTTTAACCT 57.197 30.769 0.00 0.00 31.93 3.50
1719 6600 9.850628 AAACTTTTAGTGTTCTGAAGTTTAACC 57.149 29.630 9.90 0.00 42.42 2.85
1732 6613 9.893305 CGGATGAATTTAGAAACTTTTAGTGTT 57.107 29.630 0.00 0.00 0.00 3.32
1733 6614 8.021396 GCGGATGAATTTAGAAACTTTTAGTGT 58.979 33.333 0.00 0.00 0.00 3.55
1734 6615 7.484959 GGCGGATGAATTTAGAAACTTTTAGTG 59.515 37.037 0.00 0.00 0.00 2.74
1735 6616 7.175990 TGGCGGATGAATTTAGAAACTTTTAGT 59.824 33.333 0.00 0.00 0.00 2.24
1736 6617 7.535139 TGGCGGATGAATTTAGAAACTTTTAG 58.465 34.615 0.00 0.00 0.00 1.85
1737 6618 7.392113 TCTGGCGGATGAATTTAGAAACTTTTA 59.608 33.333 0.00 0.00 0.00 1.52
1738 6619 6.208599 TCTGGCGGATGAATTTAGAAACTTTT 59.791 34.615 0.00 0.00 0.00 2.27
1739 6620 5.710099 TCTGGCGGATGAATTTAGAAACTTT 59.290 36.000 0.00 0.00 0.00 2.66
1754 6635 2.554032 CTGAAAACAACTTCTGGCGGAT 59.446 45.455 0.00 0.00 0.00 4.18
1757 6638 1.065401 TGCTGAAAACAACTTCTGGCG 59.935 47.619 0.00 0.00 31.92 5.69
1759 6640 2.360165 AGCTGCTGAAAACAACTTCTGG 59.640 45.455 0.00 0.00 0.00 3.86
1823 6704 6.111382 TCAAGAATTCAAAGATCGATCAGCT 58.889 36.000 26.47 8.40 0.00 4.24
1824 6705 6.355397 TCAAGAATTCAAAGATCGATCAGC 57.645 37.500 26.47 0.96 0.00 4.26
1838 6719 6.325596 GGCTGGTTAATGACTTCAAGAATTC 58.674 40.000 0.00 0.00 0.00 2.17
1845 6726 2.851263 ACGGCTGGTTAATGACTTCA 57.149 45.000 0.00 0.00 0.00 3.02
1859 6740 3.492421 CAAAAGTGCAATCATACGGCT 57.508 42.857 0.00 0.00 0.00 5.52
1875 6756 4.774726 TGGGAATTTATAGCCAGTGCAAAA 59.225 37.500 0.00 0.00 41.13 2.44
1889 6770 8.133024 AGTGATAGTGCATTTTTGGGAATTTA 57.867 30.769 0.00 0.00 0.00 1.40
1959 6840 8.793592 AGGAAGTGATTATTTTGAAACAGGTAC 58.206 33.333 0.00 0.00 0.00 3.34
1960 6841 8.934023 AGGAAGTGATTATTTTGAAACAGGTA 57.066 30.769 0.00 0.00 0.00 3.08
1992 6873 9.594478 TCGCTTTGTAGAGTATCATTCATTTTA 57.406 29.630 0.00 0.00 37.82 1.52
1998 6879 5.520288 TGCTTCGCTTTGTAGAGTATCATTC 59.480 40.000 0.00 0.00 37.82 2.67
2014 6896 3.595819 GGATTTGCCTGCTTCGCT 58.404 55.556 0.00 0.00 0.00 4.93
2023 6905 0.320050 TTTGCCGGAAAGGATTTGCC 59.680 50.000 5.05 0.00 44.14 4.52
2024 6906 2.385013 ATTTGCCGGAAAGGATTTGC 57.615 45.000 5.05 0.00 43.51 3.68
2025 6907 3.803778 GCATATTTGCCGGAAAGGATTTG 59.196 43.478 5.05 0.00 45.00 2.32
2026 6908 4.058721 GCATATTTGCCGGAAAGGATTT 57.941 40.909 5.05 0.00 45.00 2.17
2027 6909 3.733443 GCATATTTGCCGGAAAGGATT 57.267 42.857 5.05 0.00 45.00 3.01
2039 6921 4.260538 GCGAAACTCCAGAGAGCATATTTG 60.261 45.833 0.70 0.00 44.65 2.32
2040 6922 3.873952 GCGAAACTCCAGAGAGCATATTT 59.126 43.478 0.70 0.00 44.65 1.40
2041 6923 3.133721 AGCGAAACTCCAGAGAGCATATT 59.866 43.478 0.70 0.00 44.65 1.28
2042 6924 2.697751 AGCGAAACTCCAGAGAGCATAT 59.302 45.455 0.70 0.00 44.65 1.78
2043 6925 2.103373 AGCGAAACTCCAGAGAGCATA 58.897 47.619 0.70 0.00 44.65 3.14
2044 6926 0.901124 AGCGAAACTCCAGAGAGCAT 59.099 50.000 0.70 0.00 44.65 3.79
2045 6927 0.037882 CAGCGAAACTCCAGAGAGCA 60.038 55.000 0.70 0.00 44.65 4.26
2046 6928 0.037790 ACAGCGAAACTCCAGAGAGC 60.038 55.000 0.70 1.96 44.65 4.09
2047 6929 3.577649 TTACAGCGAAACTCCAGAGAG 57.422 47.619 0.70 0.00 46.36 3.20
2048 6930 3.764434 AGATTACAGCGAAACTCCAGAGA 59.236 43.478 0.70 0.00 0.00 3.10
2049 6931 4.109050 GAGATTACAGCGAAACTCCAGAG 58.891 47.826 0.00 0.00 0.00 3.35
2050 6932 3.764434 AGAGATTACAGCGAAACTCCAGA 59.236 43.478 0.00 0.00 0.00 3.86
2051 6933 4.109050 GAGAGATTACAGCGAAACTCCAG 58.891 47.826 0.00 0.00 0.00 3.86
2052 6934 3.764434 AGAGAGATTACAGCGAAACTCCA 59.236 43.478 0.00 0.00 0.00 3.86
2053 6935 4.379339 AGAGAGATTACAGCGAAACTCC 57.621 45.455 0.00 0.00 0.00 3.85
2054 6936 6.588373 AGAAAAGAGAGATTACAGCGAAACTC 59.412 38.462 0.00 0.00 0.00 3.01
2055 6937 6.459923 AGAAAAGAGAGATTACAGCGAAACT 58.540 36.000 0.00 0.00 0.00 2.66
2056 6938 6.453134 CGAGAAAAGAGAGATTACAGCGAAAC 60.453 42.308 0.00 0.00 0.00 2.78
2057 6939 5.573282 CGAGAAAAGAGAGATTACAGCGAAA 59.427 40.000 0.00 0.00 0.00 3.46
2058 6940 5.096169 CGAGAAAAGAGAGATTACAGCGAA 58.904 41.667 0.00 0.00 0.00 4.70
2059 6941 4.395231 TCGAGAAAAGAGAGATTACAGCGA 59.605 41.667 0.00 0.00 0.00 4.93
2060 6942 4.663166 TCGAGAAAAGAGAGATTACAGCG 58.337 43.478 0.00 0.00 0.00 5.18
2061 6943 4.502645 GCTCGAGAAAAGAGAGATTACAGC 59.497 45.833 18.75 0.00 37.93 4.40
2062 6944 5.645624 TGCTCGAGAAAAGAGAGATTACAG 58.354 41.667 18.75 0.00 37.93 2.74
2063 6945 5.393569 CCTGCTCGAGAAAAGAGAGATTACA 60.394 44.000 18.75 0.00 37.93 2.41
2064 6946 5.040635 CCTGCTCGAGAAAAGAGAGATTAC 58.959 45.833 18.75 0.00 37.93 1.89
2065 6947 4.440802 GCCTGCTCGAGAAAAGAGAGATTA 60.441 45.833 18.75 0.00 37.93 1.75
2066 6948 3.678529 GCCTGCTCGAGAAAAGAGAGATT 60.679 47.826 18.75 0.00 37.93 2.40
2067 6949 2.159114 GCCTGCTCGAGAAAAGAGAGAT 60.159 50.000 18.75 0.00 37.93 2.75
2068 6950 1.203523 GCCTGCTCGAGAAAAGAGAGA 59.796 52.381 18.75 0.00 37.93 3.10
2069 6951 1.067283 TGCCTGCTCGAGAAAAGAGAG 60.067 52.381 18.75 0.00 37.93 3.20
2070 6952 0.969149 TGCCTGCTCGAGAAAAGAGA 59.031 50.000 18.75 0.00 37.93 3.10
2071 6953 1.800805 TTGCCTGCTCGAGAAAAGAG 58.199 50.000 18.75 2.86 38.68 2.85
2072 6954 2.254546 TTTGCCTGCTCGAGAAAAGA 57.745 45.000 18.75 0.00 0.00 2.52
2073 6955 2.485426 TGATTTGCCTGCTCGAGAAAAG 59.515 45.455 18.75 9.84 0.00 2.27
2074 6956 2.503331 TGATTTGCCTGCTCGAGAAAA 58.497 42.857 18.75 8.22 0.00 2.29
2075 6957 2.183478 TGATTTGCCTGCTCGAGAAA 57.817 45.000 18.75 7.70 0.00 2.52
2076 6958 2.408271 ATGATTTGCCTGCTCGAGAA 57.592 45.000 18.75 4.16 0.00 2.87
2077 6959 2.011947 CAATGATTTGCCTGCTCGAGA 58.988 47.619 18.75 0.02 0.00 4.04
2078 6960 1.741706 ACAATGATTTGCCTGCTCGAG 59.258 47.619 8.45 8.45 36.22 4.04
2079 6961 1.825090 ACAATGATTTGCCTGCTCGA 58.175 45.000 0.00 0.00 36.22 4.04
2080 6962 2.642139 AACAATGATTTGCCTGCTCG 57.358 45.000 0.00 0.00 36.22 5.03
2081 6963 3.056322 AGGAAACAATGATTTGCCTGCTC 60.056 43.478 0.00 0.00 36.22 4.26
2082 6964 2.901839 AGGAAACAATGATTTGCCTGCT 59.098 40.909 0.00 0.00 36.22 4.24
2083 6965 3.256558 GAGGAAACAATGATTTGCCTGC 58.743 45.455 0.00 0.00 36.22 4.85
2084 6966 3.512724 AGGAGGAAACAATGATTTGCCTG 59.487 43.478 0.00 0.00 36.22 4.85
2085 6967 3.782992 AGGAGGAAACAATGATTTGCCT 58.217 40.909 0.00 0.00 36.22 4.75
2086 6968 4.541973 AAGGAGGAAACAATGATTTGCC 57.458 40.909 0.00 0.00 36.22 4.52
2087 6969 5.636543 CAGAAAGGAGGAAACAATGATTTGC 59.363 40.000 0.00 0.00 36.22 3.68
2088 6970 6.015180 TCCAGAAAGGAGGAAACAATGATTTG 60.015 38.462 0.00 0.00 43.07 2.32
2089 6971 6.077322 TCCAGAAAGGAGGAAACAATGATTT 58.923 36.000 0.00 0.00 43.07 2.17
2090 6972 5.644188 TCCAGAAAGGAGGAAACAATGATT 58.356 37.500 0.00 0.00 43.07 2.57
2091 6973 5.261040 TCCAGAAAGGAGGAAACAATGAT 57.739 39.130 0.00 0.00 43.07 2.45
2092 6974 4.722526 TCCAGAAAGGAGGAAACAATGA 57.277 40.909 0.00 0.00 43.07 2.57
2103 6985 1.766496 ACAACGGAACTCCAGAAAGGA 59.234 47.619 0.00 0.00 46.75 3.36
2104 6986 2.256117 ACAACGGAACTCCAGAAAGG 57.744 50.000 0.00 0.00 39.47 3.11
2105 6987 4.392138 GGATTACAACGGAACTCCAGAAAG 59.608 45.833 0.00 0.00 35.14 2.62
2106 6988 4.320870 GGATTACAACGGAACTCCAGAAA 58.679 43.478 0.00 0.00 35.14 2.52
2107 6989 3.307199 GGGATTACAACGGAACTCCAGAA 60.307 47.826 0.00 0.00 35.14 3.02
2108 6990 2.235402 GGGATTACAACGGAACTCCAGA 59.765 50.000 0.00 0.00 35.14 3.86
2109 6991 2.236395 AGGGATTACAACGGAACTCCAG 59.764 50.000 0.00 0.00 35.14 3.86
2110 6992 2.235402 GAGGGATTACAACGGAACTCCA 59.765 50.000 0.00 0.00 35.14 3.86
2111 6993 2.500504 AGAGGGATTACAACGGAACTCC 59.499 50.000 0.00 0.00 0.00 3.85
2112 6994 3.889520 AGAGGGATTACAACGGAACTC 57.110 47.619 0.00 0.00 0.00 3.01
2113 6995 4.635699 AAAGAGGGATTACAACGGAACT 57.364 40.909 0.00 0.00 0.00 3.01
2114 6996 5.700722 AAAAAGAGGGATTACAACGGAAC 57.299 39.130 0.00 0.00 0.00 3.62
2115 6997 5.706833 GGTAAAAAGAGGGATTACAACGGAA 59.293 40.000 0.00 0.00 32.47 4.30
2116 6998 5.221884 TGGTAAAAAGAGGGATTACAACGGA 60.222 40.000 0.00 0.00 32.47 4.69
2117 6999 5.005094 TGGTAAAAAGAGGGATTACAACGG 58.995 41.667 0.00 0.00 32.47 4.44
2118 7000 5.106436 GGTGGTAAAAAGAGGGATTACAACG 60.106 44.000 0.00 0.00 35.31 4.10
2119 7001 6.008331 AGGTGGTAAAAAGAGGGATTACAAC 58.992 40.000 0.00 0.00 34.25 3.32
2120 7002 6.007703 CAGGTGGTAAAAAGAGGGATTACAA 58.992 40.000 0.00 0.00 32.47 2.41
2121 7003 5.311121 TCAGGTGGTAAAAAGAGGGATTACA 59.689 40.000 0.00 0.00 32.47 2.41
2122 7004 5.812286 TCAGGTGGTAAAAAGAGGGATTAC 58.188 41.667 0.00 0.00 0.00 1.89
2123 7005 6.216662 TGATCAGGTGGTAAAAAGAGGGATTA 59.783 38.462 0.00 0.00 0.00 1.75
2124 7006 5.015178 TGATCAGGTGGTAAAAAGAGGGATT 59.985 40.000 0.00 0.00 0.00 3.01
2125 7007 4.540099 TGATCAGGTGGTAAAAAGAGGGAT 59.460 41.667 0.00 0.00 0.00 3.85
2126 7008 3.913799 TGATCAGGTGGTAAAAAGAGGGA 59.086 43.478 0.00 0.00 0.00 4.20
2127 7009 4.010349 GTGATCAGGTGGTAAAAAGAGGG 58.990 47.826 0.00 0.00 0.00 4.30
2128 7010 4.010349 GGTGATCAGGTGGTAAAAAGAGG 58.990 47.826 0.00 0.00 0.00 3.69
2129 7011 4.911390 AGGTGATCAGGTGGTAAAAAGAG 58.089 43.478 0.00 0.00 0.00 2.85
2130 7012 4.993705 AGGTGATCAGGTGGTAAAAAGA 57.006 40.909 0.00 0.00 0.00 2.52
2131 7013 6.884295 TGATTAGGTGATCAGGTGGTAAAAAG 59.116 38.462 0.00 0.00 32.50 2.27
2132 7014 6.785076 TGATTAGGTGATCAGGTGGTAAAAA 58.215 36.000 0.00 0.00 32.50 1.94
2133 7015 6.381498 TGATTAGGTGATCAGGTGGTAAAA 57.619 37.500 0.00 0.00 32.50 1.52
2134 7016 6.381498 TTGATTAGGTGATCAGGTGGTAAA 57.619 37.500 0.00 0.00 37.35 2.01
2135 7017 6.381498 TTTGATTAGGTGATCAGGTGGTAA 57.619 37.500 0.00 0.00 37.35 2.85
2136 7018 6.069673 ACATTTGATTAGGTGATCAGGTGGTA 60.070 38.462 0.00 0.00 37.35 3.25
2137 7019 4.927267 TTTGATTAGGTGATCAGGTGGT 57.073 40.909 0.00 0.00 37.35 4.16
2138 7020 5.195940 ACATTTGATTAGGTGATCAGGTGG 58.804 41.667 0.00 0.00 37.35 4.61
2139 7021 6.764308 AACATTTGATTAGGTGATCAGGTG 57.236 37.500 0.00 0.00 37.35 4.00
2140 7022 7.781324 AAAACATTTGATTAGGTGATCAGGT 57.219 32.000 0.00 0.00 37.35 4.00
2141 7023 8.306038 TGAAAAACATTTGATTAGGTGATCAGG 58.694 33.333 0.00 0.00 37.35 3.86
2142 7024 9.865321 ATGAAAAACATTTGATTAGGTGATCAG 57.135 29.630 0.00 0.00 37.35 2.90
2146 7028 9.585099 GCATATGAAAAACATTTGATTAGGTGA 57.415 29.630 6.97 0.00 39.24 4.02
2147 7029 9.590451 AGCATATGAAAAACATTTGATTAGGTG 57.410 29.630 6.97 0.00 39.24 4.00
2148 7030 9.807649 GAGCATATGAAAAACATTTGATTAGGT 57.192 29.630 6.97 0.00 39.24 3.08
2152 7034 9.146984 CACAGAGCATATGAAAAACATTTGATT 57.853 29.630 6.97 0.00 39.24 2.57
2153 7035 7.277098 GCACAGAGCATATGAAAAACATTTGAT 59.723 33.333 6.97 0.00 44.79 2.57
2154 7036 6.587226 GCACAGAGCATATGAAAAACATTTGA 59.413 34.615 6.97 0.00 44.79 2.69
2155 7037 6.758149 GCACAGAGCATATGAAAAACATTTG 58.242 36.000 6.97 0.00 44.79 2.32
2156 7038 6.956299 GCACAGAGCATATGAAAAACATTT 57.044 33.333 6.97 0.00 44.79 2.32
2171 7053 4.349501 GCTTCATTGATTTAGCACAGAGC 58.650 43.478 4.34 0.00 46.19 4.09
2172 7054 4.495349 CGGCTTCATTGATTTAGCACAGAG 60.495 45.833 10.21 0.00 35.36 3.35
2173 7055 3.374988 CGGCTTCATTGATTTAGCACAGA 59.625 43.478 10.21 0.00 35.36 3.41
2174 7056 3.488047 CCGGCTTCATTGATTTAGCACAG 60.488 47.826 10.21 2.65 35.36 3.66
2175 7057 2.423185 CCGGCTTCATTGATTTAGCACA 59.577 45.455 10.21 0.00 35.36 4.57
2176 7058 2.423538 ACCGGCTTCATTGATTTAGCAC 59.576 45.455 0.00 1.08 35.36 4.40
2177 7059 2.423185 CACCGGCTTCATTGATTTAGCA 59.577 45.455 0.00 0.00 35.36 3.49
2178 7060 2.682856 TCACCGGCTTCATTGATTTAGC 59.317 45.455 0.00 0.98 0.00 3.09
2179 7061 4.438744 GGTTCACCGGCTTCATTGATTTAG 60.439 45.833 0.00 0.00 0.00 1.85
2180 7062 3.442273 GGTTCACCGGCTTCATTGATTTA 59.558 43.478 0.00 0.00 0.00 1.40
2181 7063 2.231235 GGTTCACCGGCTTCATTGATTT 59.769 45.455 0.00 0.00 0.00 2.17
2182 7064 1.818674 GGTTCACCGGCTTCATTGATT 59.181 47.619 0.00 0.00 0.00 2.57
2183 7065 1.004745 AGGTTCACCGGCTTCATTGAT 59.995 47.619 0.00 0.00 42.08 2.57
2184 7066 0.400213 AGGTTCACCGGCTTCATTGA 59.600 50.000 0.00 0.00 42.08 2.57
2185 7067 2.009774 CTAGGTTCACCGGCTTCATTG 58.990 52.381 0.00 0.00 42.08 2.82
2186 7068 1.906574 TCTAGGTTCACCGGCTTCATT 59.093 47.619 0.00 0.00 42.08 2.57
2187 7069 1.207329 GTCTAGGTTCACCGGCTTCAT 59.793 52.381 0.00 0.00 42.08 2.57
2188 7070 0.606604 GTCTAGGTTCACCGGCTTCA 59.393 55.000 0.00 0.00 42.08 3.02
2189 7071 0.606604 TGTCTAGGTTCACCGGCTTC 59.393 55.000 0.00 0.00 42.08 3.86
2190 7072 1.276622 ATGTCTAGGTTCACCGGCTT 58.723 50.000 0.00 0.00 42.08 4.35
2191 7073 1.276622 AATGTCTAGGTTCACCGGCT 58.723 50.000 0.00 0.00 42.08 5.52
2192 7074 2.007608 GAAATGTCTAGGTTCACCGGC 58.992 52.381 0.00 0.00 42.08 6.13
2193 7075 3.328382 TGAAATGTCTAGGTTCACCGG 57.672 47.619 0.00 0.00 42.08 5.28
2194 7076 5.682943 TTTTGAAATGTCTAGGTTCACCG 57.317 39.130 0.00 0.00 42.08 4.94
2195 7077 9.974980 TTTATTTTTGAAATGTCTAGGTTCACC 57.025 29.630 0.00 0.00 31.21 4.02
2220 7102 2.036346 AGAATTTGCCTGCTCGCTTTTT 59.964 40.909 0.00 0.00 0.00 1.94
2221 7103 1.615392 AGAATTTGCCTGCTCGCTTTT 59.385 42.857 0.00 0.00 0.00 2.27
2222 7104 1.200948 GAGAATTTGCCTGCTCGCTTT 59.799 47.619 0.00 0.00 0.00 3.51
2223 7105 0.807496 GAGAATTTGCCTGCTCGCTT 59.193 50.000 0.00 0.00 0.00 4.68
2310 7291 4.583907 TCCAATTCTTGTGCACTCAAATGA 59.416 37.500 19.41 2.39 0.00 2.57
2318 7299 8.483307 AAATTATGATTCCAATTCTTGTGCAC 57.517 30.769 10.75 10.75 0.00 4.57
2326 7307 9.447157 TGGGTTTGAAAATTATGATTCCAATTC 57.553 29.630 0.00 0.00 0.00 2.17
2344 7325 1.507140 ACTCACTGGACTGGGTTTGA 58.493 50.000 0.00 0.00 0.00 2.69
2353 7334 8.467598 TGTTAGTCATATTCTAACTCACTGGAC 58.532 37.037 19.53 0.00 44.12 4.02
2393 7375 6.238266 CCATCATTTTATTTGATTGCTGCCAC 60.238 38.462 0.00 0.00 31.50 5.01
2399 7382 4.516321 GGGCCCATCATTTTATTTGATTGC 59.484 41.667 19.95 0.00 31.50 3.56
2414 7397 2.143876 AAAGTGTACATGGGCCCATC 57.856 50.000 35.42 23.64 33.90 3.51
2447 7430 9.860650 TTGTACATTTTGGCTACTCCATATATT 57.139 29.630 0.00 0.00 46.04 1.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.