Multiple sequence alignment - TraesCS7B01G235600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G235600 chr7B 100.000 2516 0 0 1 2516 439859303 439861818 0.000000e+00 4647.0
1 TraesCS7B01G235600 chr7D 93.769 1605 58 17 1 1579 422717392 422718980 0.000000e+00 2372.0
2 TraesCS7B01G235600 chr7D 84.336 964 110 21 579 1530 633512443 633513377 0.000000e+00 905.0
3 TraesCS7B01G235600 chr7D 89.888 178 16 2 2164 2340 593193273 593193097 7.000000e-56 228.0
4 TraesCS7B01G235600 chr7A 90.695 892 63 10 700 1582 510469757 510468877 0.000000e+00 1170.0
5 TraesCS7B01G235600 chr7A 84.418 1014 110 19 577 1566 733576792 733575803 0.000000e+00 953.0
6 TraesCS7B01G235600 chr7A 90.942 552 46 2 1031 1579 510403175 510402625 0.000000e+00 739.0
7 TraesCS7B01G235600 chr7A 85.942 313 32 7 411 715 510470081 510469773 8.680000e-85 324.0
8 TraesCS7B01G235600 chr6D 91.228 171 13 2 2163 2331 392278576 392278746 5.410000e-57 231.0
9 TraesCS7B01G235600 chr6D 89.130 184 19 1 2155 2337 260024501 260024684 7.000000e-56 228.0
10 TraesCS7B01G235600 chr6A 89.130 184 19 1 2155 2337 370675613 370675430 7.000000e-56 228.0
11 TraesCS7B01G235600 chr3B 91.124 169 13 2 2163 2330 23713606 23713439 7.000000e-56 228.0
12 TraesCS7B01G235600 chr6B 89.888 178 15 3 2156 2331 95757521 95757697 2.520000e-55 226.0
13 TraesCS7B01G235600 chr4A 90.173 173 15 2 2162 2333 625819063 625818892 9.060000e-55 224.0
14 TraesCS7B01G235600 chr5A 89.326 178 17 2 2151 2327 8174486 8174662 3.260000e-54 222.0
15 TraesCS7B01G235600 chr1D 89.385 179 15 4 2158 2333 365727160 365727337 3.260000e-54 222.0
16 TraesCS7B01G235600 chr1D 100.000 29 0 0 1652 1680 60326355 60326327 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G235600 chr7B 439859303 439861818 2515 False 4647 4647 100.0000 1 2516 1 chr7B.!!$F1 2515
1 TraesCS7B01G235600 chr7D 422717392 422718980 1588 False 2372 2372 93.7690 1 1579 1 chr7D.!!$F1 1578
2 TraesCS7B01G235600 chr7D 633512443 633513377 934 False 905 905 84.3360 579 1530 1 chr7D.!!$F2 951
3 TraesCS7B01G235600 chr7A 733575803 733576792 989 True 953 953 84.4180 577 1566 1 chr7A.!!$R2 989
4 TraesCS7B01G235600 chr7A 510468877 510470081 1204 True 747 1170 88.3185 411 1582 2 chr7A.!!$R3 1171
5 TraesCS7B01G235600 chr7A 510402625 510403175 550 True 739 739 90.9420 1031 1579 1 chr7A.!!$R1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
943 1014 0.683504 TCTGAGGAAGCCCGTAGACC 60.684 60.0 0.0 0.0 37.58 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2365 2462 0.107897 TTAGGGCCGTATGCAGTGTG 60.108 55.0 5.89 0.0 43.89 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 3.004629 TGCACTCCAAAATACTGCAACTG 59.995 43.478 0.00 0.00 34.97 3.16
69 70 7.815549 TCTTTTCTAACAAAACAACCCACTTTC 59.184 33.333 0.00 0.00 0.00 2.62
74 75 5.333299 ACAAAACAACCCACTTTCTTACC 57.667 39.130 0.00 0.00 0.00 2.85
198 200 4.141287 TGTTTGCTTGCCTATTACAGTGT 58.859 39.130 0.00 0.00 0.00 3.55
204 206 5.817296 TGCTTGCCTATTACAGTGTATGAAG 59.183 40.000 3.28 2.37 0.00 3.02
205 207 5.277538 GCTTGCCTATTACAGTGTATGAAGC 60.278 44.000 3.28 6.40 0.00 3.86
206 208 4.703897 TGCCTATTACAGTGTATGAAGCC 58.296 43.478 3.28 0.00 0.00 4.35
207 209 4.163268 TGCCTATTACAGTGTATGAAGCCA 59.837 41.667 3.28 0.00 0.00 4.75
208 210 4.752101 GCCTATTACAGTGTATGAAGCCAG 59.248 45.833 3.28 0.00 0.00 4.85
209 211 5.685075 GCCTATTACAGTGTATGAAGCCAGT 60.685 44.000 3.28 0.00 0.00 4.00
210 212 5.755375 CCTATTACAGTGTATGAAGCCAGTG 59.245 44.000 3.28 0.00 37.88 3.66
211 213 4.882842 TTACAGTGTATGAAGCCAGTGA 57.117 40.909 3.28 0.00 35.91 3.41
212 214 3.769739 ACAGTGTATGAAGCCAGTGAA 57.230 42.857 0.00 0.00 35.91 3.18
213 215 3.668447 ACAGTGTATGAAGCCAGTGAAG 58.332 45.455 0.00 0.00 35.91 3.02
223 225 1.912043 AGCCAGTGAAGCCAGTAAGAT 59.088 47.619 0.00 0.00 0.00 2.40
224 226 2.012673 GCCAGTGAAGCCAGTAAGATG 58.987 52.381 0.00 0.00 0.00 2.90
234 236 4.469657 AGCCAGTAAGATGGAAAACACAA 58.530 39.130 0.00 0.00 43.57 3.33
240 242 6.196353 CAGTAAGATGGAAAACACAAACAACG 59.804 38.462 0.00 0.00 0.00 4.10
256 260 7.009631 CACAAACAACGTGGTAATCATCAAAAA 59.990 33.333 0.00 0.00 0.00 1.94
280 284 1.731160 GTCATCACTGCTTCTGCTGAC 59.269 52.381 0.00 0.00 40.66 3.51
340 344 6.312918 GGTTGTCTGAACTAATAGCAAATCGA 59.687 38.462 0.00 0.00 0.00 3.59
380 384 2.463589 TAGGTTGCGCCAGGTTCAGG 62.464 60.000 4.18 0.00 40.61 3.86
442 447 1.276622 TGAAGCTTACAGACCCCTCC 58.723 55.000 0.00 0.00 0.00 4.30
497 504 3.775654 GTGGCCCTCTCCTCACCG 61.776 72.222 0.00 0.00 0.00 4.94
506 513 2.744202 CCTCTCCTCACCGTGATTTTTG 59.256 50.000 0.62 0.00 0.00 2.44
510 517 3.546724 TCCTCACCGTGATTTTTGTTCA 58.453 40.909 0.62 0.00 0.00 3.18
522 529 8.759641 CGTGATTTTTGTTCAACCAAATATTGA 58.240 29.630 0.00 0.00 34.50 2.57
637 649 2.749621 CAACTGCATGGTCTTACCTTCC 59.250 50.000 0.00 0.00 39.58 3.46
851 908 1.745653 TCGACATCGATGAGCTCTTGT 59.254 47.619 31.33 8.17 44.22 3.16
860 917 3.690422 GATGAGCTCTTGTAGTCAGACG 58.310 50.000 16.19 0.00 0.00 4.18
941 1012 2.032620 GATTCTGAGGAAGCCCGTAGA 58.967 52.381 0.00 0.00 37.58 2.59
942 1013 1.183549 TTCTGAGGAAGCCCGTAGAC 58.816 55.000 0.00 0.00 37.58 2.59
943 1014 0.683504 TCTGAGGAAGCCCGTAGACC 60.684 60.000 0.00 0.00 37.58 3.85
944 1015 0.684805 CTGAGGAAGCCCGTAGACCT 60.685 60.000 0.00 0.00 37.58 3.85
959 1030 4.398673 CGTAGACCTACCTAGCTCAAACTT 59.601 45.833 0.00 0.00 32.61 2.66
989 1065 1.721487 CATTGGAACCGGCGTGATC 59.279 57.895 6.01 1.53 0.00 2.92
991 1067 2.191786 ATTGGAACCGGCGTGATCCA 62.192 55.000 18.38 18.38 40.10 3.41
1194 1279 1.141254 CAGCTCCTGCAAGATCCAGAT 59.859 52.381 0.00 0.00 42.74 2.90
1196 1282 1.595466 CTCCTGCAAGATCCAGATGC 58.405 55.000 0.00 1.97 40.45 3.91
1199 1285 1.153107 TGCAAGATCCAGATGCGGG 60.153 57.895 0.00 0.00 42.91 6.13
1305 1391 4.250305 AAACTGAGGTGCGGCGGT 62.250 61.111 9.78 0.00 0.00 5.68
1579 1676 6.423182 AGGATTGGATCGGATTGTTAAGAAA 58.577 36.000 0.00 0.00 0.00 2.52
1582 1679 7.649306 GGATTGGATCGGATTGTTAAGAAATTG 59.351 37.037 0.00 0.00 0.00 2.32
1583 1680 7.461182 TTGGATCGGATTGTTAAGAAATTGT 57.539 32.000 0.00 0.00 0.00 2.71
1584 1681 8.568676 TTGGATCGGATTGTTAAGAAATTGTA 57.431 30.769 0.00 0.00 0.00 2.41
1585 1682 8.746052 TGGATCGGATTGTTAAGAAATTGTAT 57.254 30.769 0.00 0.00 0.00 2.29
1586 1683 8.620416 TGGATCGGATTGTTAAGAAATTGTATG 58.380 33.333 0.00 0.00 0.00 2.39
1587 1684 8.621286 GGATCGGATTGTTAAGAAATTGTATGT 58.379 33.333 0.00 0.00 0.00 2.29
1590 1687 8.597227 TCGGATTGTTAAGAAATTGTATGTACG 58.403 33.333 0.00 0.00 0.00 3.67
1591 1688 8.597227 CGGATTGTTAAGAAATTGTATGTACGA 58.403 33.333 0.00 0.00 0.00 3.43
1597 1694 9.698617 GTTAAGAAATTGTATGTACGATGAACC 57.301 33.333 0.00 0.00 30.88 3.62
1598 1695 9.661563 TTAAGAAATTGTATGTACGATGAACCT 57.338 29.630 0.00 0.00 30.88 3.50
1599 1696 7.539712 AGAAATTGTATGTACGATGAACCTG 57.460 36.000 0.00 0.00 30.88 4.00
1600 1697 7.103641 AGAAATTGTATGTACGATGAACCTGT 58.896 34.615 0.00 0.00 30.88 4.00
1601 1698 7.606456 AGAAATTGTATGTACGATGAACCTGTT 59.394 33.333 0.00 0.00 30.88 3.16
1602 1699 7.681939 AATTGTATGTACGATGAACCTGTTT 57.318 32.000 0.00 0.00 30.88 2.83
1603 1700 8.780846 AATTGTATGTACGATGAACCTGTTTA 57.219 30.769 0.00 0.00 30.88 2.01
1604 1701 8.958119 ATTGTATGTACGATGAACCTGTTTAT 57.042 30.769 0.00 0.00 0.00 1.40
1606 1703 9.872721 TTGTATGTACGATGAACCTGTTTATAA 57.127 29.630 0.00 0.00 0.00 0.98
1610 1707 8.564648 TGTACGATGAACCTGTTTATAATACG 57.435 34.615 0.00 0.00 0.00 3.06
1611 1708 8.404765 TGTACGATGAACCTGTTTATAATACGA 58.595 33.333 0.00 0.00 0.00 3.43
1612 1709 9.236691 GTACGATGAACCTGTTTATAATACGAA 57.763 33.333 0.00 0.00 0.00 3.85
1613 1710 8.706492 ACGATGAACCTGTTTATAATACGAAA 57.294 30.769 0.00 0.00 0.00 3.46
1614 1711 9.153721 ACGATGAACCTGTTTATAATACGAAAA 57.846 29.630 0.00 0.00 0.00 2.29
1703 1800 8.894409 AATAAATGTTCATCACATGTTGTACG 57.106 30.769 0.00 0.00 46.23 3.67
1704 1801 6.552859 AAATGTTCATCACATGTTGTACGA 57.447 33.333 0.00 0.00 46.23 3.43
1705 1802 6.741992 AATGTTCATCACATGTTGTACGAT 57.258 33.333 0.00 0.00 46.23 3.73
1706 1803 5.529014 TGTTCATCACATGTTGTACGATG 57.471 39.130 14.08 14.08 34.17 3.84
1707 1804 5.233988 TGTTCATCACATGTTGTACGATGA 58.766 37.500 17.37 17.37 37.74 2.92
1708 1805 5.874261 TGTTCATCACATGTTGTACGATGAT 59.126 36.000 20.35 6.12 38.63 2.45
1709 1806 5.971895 TCATCACATGTTGTACGATGATG 57.028 39.130 17.37 14.51 43.03 3.07
1710 1807 5.418676 TCATCACATGTTGTACGATGATGT 58.581 37.500 17.37 12.13 42.52 3.06
1711 1808 5.874261 TCATCACATGTTGTACGATGATGTT 59.126 36.000 17.37 2.31 42.52 2.71
1712 1809 5.778161 TCACATGTTGTACGATGATGTTC 57.222 39.130 0.00 0.00 0.00 3.18
1713 1810 5.233988 TCACATGTTGTACGATGATGTTCA 58.766 37.500 0.00 0.00 0.00 3.18
1714 1811 5.348451 TCACATGTTGTACGATGATGTTCAG 59.652 40.000 0.00 0.47 0.00 3.02
1715 1812 5.120674 CACATGTTGTACGATGATGTTCAGT 59.879 40.000 0.00 0.00 0.00 3.41
1716 1813 5.120674 ACATGTTGTACGATGATGTTCAGTG 59.879 40.000 0.00 0.00 0.00 3.66
1717 1814 4.877282 TGTTGTACGATGATGTTCAGTGA 58.123 39.130 0.00 0.00 0.00 3.41
1718 1815 5.293560 TGTTGTACGATGATGTTCAGTGAA 58.706 37.500 0.08 0.08 0.00 3.18
1719 1816 5.176774 TGTTGTACGATGATGTTCAGTGAAC 59.823 40.000 25.99 25.99 42.26 3.18
1720 1817 3.917985 TGTACGATGATGTTCAGTGAACG 59.082 43.478 26.59 17.76 44.55 3.95
1721 1818 3.026630 ACGATGATGTTCAGTGAACGT 57.973 42.857 26.94 26.94 44.55 3.99
1722 1819 3.390135 ACGATGATGTTCAGTGAACGTT 58.610 40.909 27.21 18.73 44.55 3.99
1723 1820 3.807622 ACGATGATGTTCAGTGAACGTTT 59.192 39.130 27.21 19.16 44.55 3.60
1724 1821 4.272504 ACGATGATGTTCAGTGAACGTTTT 59.727 37.500 27.21 18.86 44.55 2.43
1725 1822 5.204833 CGATGATGTTCAGTGAACGTTTTT 58.795 37.500 27.21 16.77 44.55 1.94
1726 1823 5.113975 CGATGATGTTCAGTGAACGTTTTTG 59.886 40.000 27.21 18.24 44.55 2.44
1727 1824 5.303747 TGATGTTCAGTGAACGTTTTTGT 57.696 34.783 27.21 9.98 44.55 2.83
1728 1825 6.424176 TGATGTTCAGTGAACGTTTTTGTA 57.576 33.333 27.21 10.80 44.55 2.41
1729 1826 6.843208 TGATGTTCAGTGAACGTTTTTGTAA 58.157 32.000 27.21 10.15 44.55 2.41
1730 1827 7.476667 TGATGTTCAGTGAACGTTTTTGTAAT 58.523 30.769 27.21 14.02 44.55 1.89
1731 1828 8.613482 TGATGTTCAGTGAACGTTTTTGTAATA 58.387 29.630 27.21 9.02 44.55 0.98
1732 1829 8.776680 ATGTTCAGTGAACGTTTTTGTAATAC 57.223 30.769 26.59 3.55 44.55 1.89
1733 1830 7.188157 TGTTCAGTGAACGTTTTTGTAATACC 58.812 34.615 26.59 2.38 44.55 2.73
1734 1831 6.922247 TCAGTGAACGTTTTTGTAATACCA 57.078 33.333 0.46 0.00 0.00 3.25
1735 1832 7.317842 TCAGTGAACGTTTTTGTAATACCAA 57.682 32.000 0.46 0.00 0.00 3.67
1736 1833 7.759465 TCAGTGAACGTTTTTGTAATACCAAA 58.241 30.769 0.46 0.00 32.70 3.28
1737 1834 8.242053 TCAGTGAACGTTTTTGTAATACCAAAA 58.758 29.630 0.46 0.00 41.28 2.44
1738 1835 8.861101 CAGTGAACGTTTTTGTAATACCAAAAA 58.139 29.630 0.46 7.51 46.50 1.94
1825 1922 7.643528 ACAACTGCTCATCGTATATTGTATG 57.356 36.000 0.00 0.00 0.00 2.39
1826 1923 6.646653 ACAACTGCTCATCGTATATTGTATGG 59.353 38.462 0.00 0.00 0.00 2.74
1827 1924 6.346477 ACTGCTCATCGTATATTGTATGGT 57.654 37.500 0.00 0.00 0.00 3.55
1828 1925 7.462571 ACTGCTCATCGTATATTGTATGGTA 57.537 36.000 0.00 0.00 0.00 3.25
1829 1926 7.892609 ACTGCTCATCGTATATTGTATGGTAA 58.107 34.615 0.00 0.00 0.00 2.85
1830 1927 8.531982 ACTGCTCATCGTATATTGTATGGTAAT 58.468 33.333 0.00 0.00 0.00 1.89
1831 1928 8.702163 TGCTCATCGTATATTGTATGGTAATG 57.298 34.615 0.00 0.00 0.00 1.90
1832 1929 8.311109 TGCTCATCGTATATTGTATGGTAATGT 58.689 33.333 0.00 0.00 0.00 2.71
1833 1930 9.151471 GCTCATCGTATATTGTATGGTAATGTT 57.849 33.333 0.00 0.00 0.00 2.71
1838 1935 9.471084 TCGTATATTGTATGGTAATGTTCAGTG 57.529 33.333 0.00 0.00 0.00 3.66
1839 1936 9.256477 CGTATATTGTATGGTAATGTTCAGTGT 57.744 33.333 0.00 0.00 0.00 3.55
1844 1941 8.856153 TTGTATGGTAATGTTCAGTGTGTATT 57.144 30.769 0.00 0.00 0.00 1.89
1845 1942 8.487313 TGTATGGTAATGTTCAGTGTGTATTC 57.513 34.615 0.00 0.00 0.00 1.75
1846 1943 8.097662 TGTATGGTAATGTTCAGTGTGTATTCA 58.902 33.333 0.00 0.00 0.00 2.57
1847 1944 6.795098 TGGTAATGTTCAGTGTGTATTCAC 57.205 37.500 0.00 0.00 44.08 3.18
1864 1961 9.158364 GTGTATTCACAAAAATATCGCATACTG 57.842 33.333 0.00 0.00 43.37 2.74
1865 1962 9.103861 TGTATTCACAAAAATATCGCATACTGA 57.896 29.630 0.00 0.00 0.00 3.41
1866 1963 9.929722 GTATTCACAAAAATATCGCATACTGAA 57.070 29.630 0.00 0.00 0.00 3.02
1868 1965 9.853555 ATTCACAAAAATATCGCATACTGAAAA 57.146 25.926 0.00 0.00 0.00 2.29
1869 1966 8.894409 TCACAAAAATATCGCATACTGAAAAG 57.106 30.769 0.00 0.00 0.00 2.27
1870 1967 7.484641 TCACAAAAATATCGCATACTGAAAAGC 59.515 33.333 0.00 0.00 0.00 3.51
1871 1968 6.751888 ACAAAAATATCGCATACTGAAAAGCC 59.248 34.615 0.00 0.00 0.00 4.35
1872 1969 5.438761 AAATATCGCATACTGAAAAGCCC 57.561 39.130 0.00 0.00 0.00 5.19
1873 1970 2.418368 ATCGCATACTGAAAAGCCCA 57.582 45.000 0.00 0.00 0.00 5.36
1874 1971 1.448985 TCGCATACTGAAAAGCCCAC 58.551 50.000 0.00 0.00 0.00 4.61
1875 1972 1.003118 TCGCATACTGAAAAGCCCACT 59.997 47.619 0.00 0.00 0.00 4.00
1876 1973 1.131126 CGCATACTGAAAAGCCCACTG 59.869 52.381 0.00 0.00 0.00 3.66
1877 1974 2.436417 GCATACTGAAAAGCCCACTGA 58.564 47.619 0.00 0.00 0.00 3.41
1878 1975 2.819608 GCATACTGAAAAGCCCACTGAA 59.180 45.455 0.00 0.00 0.00 3.02
1879 1976 3.445096 GCATACTGAAAAGCCCACTGAAT 59.555 43.478 0.00 0.00 0.00 2.57
1880 1977 4.082026 GCATACTGAAAAGCCCACTGAATT 60.082 41.667 0.00 0.00 0.00 2.17
1881 1978 5.567423 GCATACTGAAAAGCCCACTGAATTT 60.567 40.000 0.00 0.00 0.00 1.82
1882 1979 6.458210 CATACTGAAAAGCCCACTGAATTTT 58.542 36.000 0.00 0.00 0.00 1.82
1883 1980 5.357742 ACTGAAAAGCCCACTGAATTTTT 57.642 34.783 0.00 0.00 0.00 1.94
1915 2012 8.816640 ATGTTGACAATATTGAAAAAGTGTCC 57.183 30.769 22.16 3.95 35.38 4.02
1916 2013 8.006298 TGTTGACAATATTGAAAAAGTGTCCT 57.994 30.769 22.16 0.00 35.38 3.85
1917 2014 9.126151 TGTTGACAATATTGAAAAAGTGTCCTA 57.874 29.630 22.16 0.00 35.38 2.94
1918 2015 9.394477 GTTGACAATATTGAAAAAGTGTCCTAC 57.606 33.333 22.16 4.90 35.38 3.18
1919 2016 8.684386 TGACAATATTGAAAAAGTGTCCTACA 57.316 30.769 22.16 0.00 35.38 2.74
1943 2040 9.531942 ACACATATTATACAATTTTGCATGGTG 57.468 29.630 0.00 0.00 0.00 4.17
1944 2041 9.531942 CACATATTATACAATTTTGCATGGTGT 57.468 29.630 0.00 0.00 0.00 4.16
1952 2049 7.599630 ACAATTTTGCATGGTGTTATGAATC 57.400 32.000 0.00 0.00 0.00 2.52
1953 2050 7.388437 ACAATTTTGCATGGTGTTATGAATCT 58.612 30.769 0.00 0.00 0.00 2.40
1954 2051 8.530311 ACAATTTTGCATGGTGTTATGAATCTA 58.470 29.630 0.00 0.00 0.00 1.98
1955 2052 8.810427 CAATTTTGCATGGTGTTATGAATCTAC 58.190 33.333 0.00 0.00 0.00 2.59
1956 2053 5.733226 TTGCATGGTGTTATGAATCTACG 57.267 39.130 0.00 0.00 0.00 3.51
1957 2054 5.017294 TGCATGGTGTTATGAATCTACGA 57.983 39.130 0.00 0.00 0.00 3.43
1958 2055 5.423886 TGCATGGTGTTATGAATCTACGAA 58.576 37.500 0.00 0.00 0.00 3.85
1959 2056 5.877564 TGCATGGTGTTATGAATCTACGAAA 59.122 36.000 0.00 0.00 0.00 3.46
1960 2057 6.372937 TGCATGGTGTTATGAATCTACGAAAA 59.627 34.615 0.00 0.00 0.00 2.29
1961 2058 7.094592 TGCATGGTGTTATGAATCTACGAAAAA 60.095 33.333 0.00 0.00 0.00 1.94
1962 2059 7.429340 GCATGGTGTTATGAATCTACGAAAAAG 59.571 37.037 0.00 0.00 0.00 2.27
1963 2060 7.372451 TGGTGTTATGAATCTACGAAAAAGG 57.628 36.000 0.00 0.00 0.00 3.11
1964 2061 6.373216 TGGTGTTATGAATCTACGAAAAAGGG 59.627 38.462 0.00 0.00 0.00 3.95
1965 2062 6.255950 GTGTTATGAATCTACGAAAAAGGGC 58.744 40.000 0.00 0.00 0.00 5.19
1966 2063 5.355910 TGTTATGAATCTACGAAAAAGGGCC 59.644 40.000 0.00 0.00 0.00 5.80
1967 2064 2.718563 TGAATCTACGAAAAAGGGCCC 58.281 47.619 16.46 16.46 0.00 5.80
1968 2065 2.307686 TGAATCTACGAAAAAGGGCCCT 59.692 45.455 22.28 22.28 0.00 5.19
1969 2066 3.520317 TGAATCTACGAAAAAGGGCCCTA 59.480 43.478 28.96 6.04 0.00 3.53
1970 2067 3.555527 ATCTACGAAAAAGGGCCCTAC 57.444 47.619 28.96 15.91 0.00 3.18
1971 2068 2.259012 TCTACGAAAAAGGGCCCTACA 58.741 47.619 28.96 4.16 0.00 2.74
1972 2069 2.841881 TCTACGAAAAAGGGCCCTACAT 59.158 45.455 28.96 14.46 0.00 2.29
1973 2070 4.032310 TCTACGAAAAAGGGCCCTACATA 58.968 43.478 28.96 11.08 0.00 2.29
1974 2071 3.945640 ACGAAAAAGGGCCCTACATAT 57.054 42.857 28.96 5.71 0.00 1.78
1975 2072 5.840149 TCTACGAAAAAGGGCCCTACATATA 59.160 40.000 28.96 12.76 0.00 0.86
1976 2073 5.578157 ACGAAAAAGGGCCCTACATATAT 57.422 39.130 28.96 3.77 0.00 0.86
1977 2074 5.948842 ACGAAAAAGGGCCCTACATATATT 58.051 37.500 28.96 11.36 0.00 1.28
1978 2075 5.768164 ACGAAAAAGGGCCCTACATATATTG 59.232 40.000 28.96 13.32 0.00 1.90
1979 2076 5.768164 CGAAAAAGGGCCCTACATATATTGT 59.232 40.000 28.96 8.94 42.62 2.71
1980 2077 6.938030 CGAAAAAGGGCCCTACATATATTGTA 59.062 38.462 28.96 0.00 39.87 2.41
1981 2078 7.610305 CGAAAAAGGGCCCTACATATATTGTAT 59.390 37.037 28.96 0.00 40.02 2.29
1982 2079 9.969001 GAAAAAGGGCCCTACATATATTGTATA 57.031 33.333 28.96 0.00 40.02 1.47
2055 2152 9.624697 AATATGCAGTATAATTTTTGTATGCGG 57.375 29.630 0.00 0.00 35.23 5.69
2056 2153 6.443934 TGCAGTATAATTTTTGTATGCGGT 57.556 33.333 0.00 0.00 35.23 5.68
2057 2154 7.555306 TGCAGTATAATTTTTGTATGCGGTA 57.445 32.000 0.00 0.00 35.23 4.02
2058 2155 8.160521 TGCAGTATAATTTTTGTATGCGGTAT 57.839 30.769 0.00 0.00 35.23 2.73
2059 2156 9.274206 TGCAGTATAATTTTTGTATGCGGTATA 57.726 29.630 0.00 0.00 35.23 1.47
2119 2216 7.744087 TTTTTCAATAGTATGCAGTGACTGT 57.256 32.000 14.82 0.00 33.43 3.55
2120 2217 6.726258 TTTCAATAGTATGCAGTGACTGTG 57.274 37.500 14.82 1.91 33.43 3.66
2121 2218 5.659440 TCAATAGTATGCAGTGACTGTGA 57.341 39.130 14.82 4.39 33.43 3.58
2122 2219 6.036577 TCAATAGTATGCAGTGACTGTGAA 57.963 37.500 14.82 0.83 33.43 3.18
2123 2220 5.869344 TCAATAGTATGCAGTGACTGTGAAC 59.131 40.000 14.82 9.45 33.43 3.18
2124 2221 5.667539 ATAGTATGCAGTGACTGTGAACT 57.332 39.130 14.82 15.58 33.43 3.01
2125 2222 6.775594 ATAGTATGCAGTGACTGTGAACTA 57.224 37.500 14.82 17.03 33.43 2.24
2126 2223 5.667539 AGTATGCAGTGACTGTGAACTAT 57.332 39.130 14.82 2.84 33.43 2.12
2127 2224 6.775594 AGTATGCAGTGACTGTGAACTATA 57.224 37.500 14.82 1.98 33.43 1.31
2128 2225 6.565234 AGTATGCAGTGACTGTGAACTATAC 58.435 40.000 14.82 12.25 33.43 1.47
2129 2226 5.667539 ATGCAGTGACTGTGAACTATACT 57.332 39.130 14.82 0.00 33.43 2.12
2130 2227 5.468540 TGCAGTGACTGTGAACTATACTT 57.531 39.130 14.82 0.00 33.43 2.24
2131 2228 5.853936 TGCAGTGACTGTGAACTATACTTT 58.146 37.500 14.82 0.00 33.43 2.66
2132 2229 6.288294 TGCAGTGACTGTGAACTATACTTTT 58.712 36.000 14.82 0.00 33.43 2.27
2133 2230 6.765989 TGCAGTGACTGTGAACTATACTTTTT 59.234 34.615 14.82 0.00 33.43 1.94
2134 2231 7.042051 TGCAGTGACTGTGAACTATACTTTTTC 60.042 37.037 14.82 0.00 33.43 2.29
2135 2232 7.042051 GCAGTGACTGTGAACTATACTTTTTCA 60.042 37.037 14.82 0.00 33.43 2.69
2136 2233 8.491152 CAGTGACTGTGAACTATACTTTTTCAG 58.509 37.037 4.01 0.00 29.97 3.02
2137 2234 7.657761 AGTGACTGTGAACTATACTTTTTCAGG 59.342 37.037 0.00 0.00 29.97 3.86
2138 2235 6.426937 TGACTGTGAACTATACTTTTTCAGGC 59.573 38.462 0.00 0.00 29.97 4.85
2139 2236 6.296026 ACTGTGAACTATACTTTTTCAGGCA 58.704 36.000 0.00 0.00 29.97 4.75
2140 2237 6.204882 ACTGTGAACTATACTTTTTCAGGCAC 59.795 38.462 0.00 0.00 29.97 5.01
2141 2238 6.296026 TGTGAACTATACTTTTTCAGGCACT 58.704 36.000 0.00 0.00 43.88 4.40
2176 2273 8.928270 CAATATATATTGTACTCCCTCCGTTC 57.072 38.462 22.33 0.00 38.53 3.95
2177 2274 8.750298 CAATATATATTGTACTCCCTCCGTTCT 58.250 37.037 22.33 0.00 38.53 3.01
2178 2275 6.837471 ATATATTGTACTCCCTCCGTTCTC 57.163 41.667 0.00 0.00 0.00 2.87
2179 2276 2.297698 TTGTACTCCCTCCGTTCTCA 57.702 50.000 0.00 0.00 0.00 3.27
2180 2277 2.297698 TGTACTCCCTCCGTTCTCAA 57.702 50.000 0.00 0.00 0.00 3.02
2181 2278 2.600790 TGTACTCCCTCCGTTCTCAAA 58.399 47.619 0.00 0.00 0.00 2.69
2182 2279 3.170717 TGTACTCCCTCCGTTCTCAAAT 58.829 45.455 0.00 0.00 0.00 2.32
2183 2280 4.346730 TGTACTCCCTCCGTTCTCAAATA 58.653 43.478 0.00 0.00 0.00 1.40
2184 2281 4.960469 TGTACTCCCTCCGTTCTCAAATAT 59.040 41.667 0.00 0.00 0.00 1.28
2185 2282 5.424252 TGTACTCCCTCCGTTCTCAAATATT 59.576 40.000 0.00 0.00 0.00 1.28
2186 2283 5.437191 ACTCCCTCCGTTCTCAAATATTT 57.563 39.130 0.00 0.00 0.00 1.40
2187 2284 5.186198 ACTCCCTCCGTTCTCAAATATTTG 58.814 41.667 20.13 20.13 39.48 2.32
2188 2285 5.174037 TCCCTCCGTTCTCAAATATTTGT 57.826 39.130 23.95 0.00 39.18 2.83
2189 2286 5.183228 TCCCTCCGTTCTCAAATATTTGTC 58.817 41.667 23.95 13.65 39.18 3.18
2190 2287 5.045869 TCCCTCCGTTCTCAAATATTTGTCT 60.046 40.000 23.95 0.00 39.18 3.41
2191 2288 5.648092 CCCTCCGTTCTCAAATATTTGTCTT 59.352 40.000 23.95 0.00 39.18 3.01
2192 2289 6.151144 CCCTCCGTTCTCAAATATTTGTCTTT 59.849 38.462 23.95 0.00 39.18 2.52
2193 2290 7.244192 CCTCCGTTCTCAAATATTTGTCTTTC 58.756 38.462 23.95 12.84 39.18 2.62
2194 2291 7.119846 CCTCCGTTCTCAAATATTTGTCTTTCT 59.880 37.037 23.95 0.00 39.18 2.52
2195 2292 9.151471 CTCCGTTCTCAAATATTTGTCTTTCTA 57.849 33.333 23.95 5.84 39.18 2.10
2196 2293 9.151471 TCCGTTCTCAAATATTTGTCTTTCTAG 57.849 33.333 23.95 14.05 39.18 2.43
2197 2294 9.151471 CCGTTCTCAAATATTTGTCTTTCTAGA 57.849 33.333 23.95 15.80 39.18 2.43
2210 2307 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2211 2308 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2212 2309 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2213 2310 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2214 2311 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2215 2312 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2216 2313 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2217 2314 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2218 2315 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2226 2323 8.840833 TTCAACAAGTGACTACATATAAAGCA 57.159 30.769 0.00 0.00 35.39 3.91
2227 2324 8.840833 TCAACAAGTGACTACATATAAAGCAA 57.159 30.769 0.00 0.00 0.00 3.91
2228 2325 9.278978 TCAACAAGTGACTACATATAAAGCAAA 57.721 29.630 0.00 0.00 0.00 3.68
2229 2326 9.891828 CAACAAGTGACTACATATAAAGCAAAA 57.108 29.630 0.00 0.00 0.00 2.44
2234 2331 9.672673 AGTGACTACATATAAAGCAAAATGAGT 57.327 29.630 0.00 0.00 0.00 3.41
2235 2332 9.708222 GTGACTACATATAAAGCAAAATGAGTG 57.292 33.333 0.00 0.00 0.00 3.51
2236 2333 9.665719 TGACTACATATAAAGCAAAATGAGTGA 57.334 29.630 0.00 0.00 0.00 3.41
2284 2381 9.890629 ATATACATTCGCATGTTATAGTCCATT 57.109 29.630 5.89 0.00 41.16 3.16
2285 2382 6.942532 ACATTCGCATGTTATAGTCCATTT 57.057 33.333 0.00 0.00 41.16 2.32
2286 2383 6.728200 ACATTCGCATGTTATAGTCCATTTG 58.272 36.000 0.00 0.00 41.16 2.32
2287 2384 6.542005 ACATTCGCATGTTATAGTCCATTTGA 59.458 34.615 0.00 0.00 41.16 2.69
2288 2385 6.993786 TTCGCATGTTATAGTCCATTTGAA 57.006 33.333 0.00 0.00 0.00 2.69
2289 2386 6.993786 TCGCATGTTATAGTCCATTTGAAA 57.006 33.333 0.00 0.00 0.00 2.69
2290 2387 7.566760 TCGCATGTTATAGTCCATTTGAAAT 57.433 32.000 0.00 0.00 0.00 2.17
2291 2388 7.416817 TCGCATGTTATAGTCCATTTGAAATG 58.583 34.615 10.84 10.84 0.00 2.32
2292 2389 7.066887 TCGCATGTTATAGTCCATTTGAAATGT 59.933 33.333 15.93 1.43 0.00 2.71
2293 2390 7.376866 CGCATGTTATAGTCCATTTGAAATGTC 59.623 37.037 15.93 9.10 0.00 3.06
2294 2391 8.408601 GCATGTTATAGTCCATTTGAAATGTCT 58.591 33.333 15.93 14.81 0.00 3.41
2325 2422 9.533831 AGACAAATATTTGGAAACATAGGAAGT 57.466 29.630 27.43 5.67 42.34 3.01
2371 2468 4.061570 TCGATATACGATACGCACACTG 57.938 45.455 0.00 0.00 46.45 3.66
2372 2469 2.588539 CGATATACGATACGCACACTGC 59.411 50.000 0.00 0.00 45.77 4.40
2373 2470 3.561503 GATATACGATACGCACACTGCA 58.438 45.455 0.00 0.00 45.36 4.41
2374 2471 2.509052 ATACGATACGCACACTGCAT 57.491 45.000 0.00 0.00 45.36 3.96
2375 2472 3.636282 ATACGATACGCACACTGCATA 57.364 42.857 0.00 0.00 45.36 3.14
2376 2473 1.556564 ACGATACGCACACTGCATAC 58.443 50.000 0.00 0.00 45.36 2.39
2377 2474 0.498511 CGATACGCACACTGCATACG 59.501 55.000 0.00 0.00 45.36 3.06
2378 2475 0.852777 GATACGCACACTGCATACGG 59.147 55.000 0.00 0.00 45.36 4.02
2379 2476 1.151777 ATACGCACACTGCATACGGC 61.152 55.000 0.00 0.00 45.36 5.68
2380 2477 3.864686 CGCACACTGCATACGGCC 61.865 66.667 0.00 0.00 45.36 6.13
2381 2478 3.508840 GCACACTGCATACGGCCC 61.509 66.667 0.00 0.00 44.26 5.80
2382 2479 2.268920 CACACTGCATACGGCCCT 59.731 61.111 0.00 0.00 43.89 5.19
2383 2480 1.520192 CACACTGCATACGGCCCTA 59.480 57.895 0.00 0.00 43.89 3.53
2384 2481 0.107897 CACACTGCATACGGCCCTAA 60.108 55.000 0.00 0.00 43.89 2.69
2385 2482 0.178068 ACACTGCATACGGCCCTAAG 59.822 55.000 0.00 0.00 43.89 2.18
2386 2483 0.464036 CACTGCATACGGCCCTAAGA 59.536 55.000 0.00 0.00 43.89 2.10
2387 2484 1.134521 CACTGCATACGGCCCTAAGAA 60.135 52.381 0.00 0.00 43.89 2.52
2388 2485 1.768870 ACTGCATACGGCCCTAAGAAT 59.231 47.619 0.00 0.00 43.89 2.40
2389 2486 2.969950 ACTGCATACGGCCCTAAGAATA 59.030 45.455 0.00 0.00 43.89 1.75
2390 2487 3.244112 ACTGCATACGGCCCTAAGAATAC 60.244 47.826 0.00 0.00 43.89 1.89
2391 2488 2.038033 TGCATACGGCCCTAAGAATACC 59.962 50.000 0.00 0.00 43.89 2.73
2392 2489 2.038033 GCATACGGCCCTAAGAATACCA 59.962 50.000 0.00 0.00 36.11 3.25
2393 2490 3.495453 GCATACGGCCCTAAGAATACCAA 60.495 47.826 0.00 0.00 36.11 3.67
2394 2491 4.315803 CATACGGCCCTAAGAATACCAAG 58.684 47.826 0.00 0.00 0.00 3.61
2395 2492 2.474112 ACGGCCCTAAGAATACCAAGA 58.526 47.619 0.00 0.00 0.00 3.02
2396 2493 3.046374 ACGGCCCTAAGAATACCAAGAT 58.954 45.455 0.00 0.00 0.00 2.40
2397 2494 3.071167 ACGGCCCTAAGAATACCAAGATC 59.929 47.826 0.00 0.00 0.00 2.75
2398 2495 3.325135 CGGCCCTAAGAATACCAAGATCT 59.675 47.826 0.00 0.00 0.00 2.75
2399 2496 4.646572 GGCCCTAAGAATACCAAGATCTG 58.353 47.826 0.00 0.00 0.00 2.90
2400 2497 4.348168 GGCCCTAAGAATACCAAGATCTGA 59.652 45.833 0.00 0.00 0.00 3.27
2401 2498 5.163195 GGCCCTAAGAATACCAAGATCTGAA 60.163 44.000 0.00 0.00 0.00 3.02
2402 2499 6.357367 GCCCTAAGAATACCAAGATCTGAAA 58.643 40.000 0.00 0.00 0.00 2.69
2403 2500 6.828785 GCCCTAAGAATACCAAGATCTGAAAA 59.171 38.462 0.00 0.00 0.00 2.29
2404 2501 7.339466 GCCCTAAGAATACCAAGATCTGAAAAA 59.661 37.037 0.00 0.00 0.00 1.94
2460 2557 6.257423 CAAAAATTGGAACAGTCAAAAAGGC 58.743 36.000 0.00 0.00 42.39 4.35
2461 2558 5.357742 AAATTGGAACAGTCAAAAAGGCT 57.642 34.783 0.00 0.00 42.39 4.58
2462 2559 6.478512 AAATTGGAACAGTCAAAAAGGCTA 57.521 33.333 0.00 0.00 42.39 3.93
2463 2560 5.712152 ATTGGAACAGTCAAAAAGGCTAG 57.288 39.130 0.00 0.00 42.39 3.42
2464 2561 4.431416 TGGAACAGTCAAAAAGGCTAGA 57.569 40.909 0.00 0.00 0.00 2.43
2465 2562 4.787551 TGGAACAGTCAAAAAGGCTAGAA 58.212 39.130 0.00 0.00 0.00 2.10
2466 2563 4.578928 TGGAACAGTCAAAAAGGCTAGAAC 59.421 41.667 0.00 0.00 0.00 3.01
2467 2564 4.578928 GGAACAGTCAAAAAGGCTAGAACA 59.421 41.667 0.00 0.00 0.00 3.18
2468 2565 5.241728 GGAACAGTCAAAAAGGCTAGAACAT 59.758 40.000 0.00 0.00 0.00 2.71
2469 2566 5.695851 ACAGTCAAAAAGGCTAGAACATG 57.304 39.130 0.00 0.00 0.00 3.21
2470 2567 5.133221 ACAGTCAAAAAGGCTAGAACATGT 58.867 37.500 0.00 0.00 0.00 3.21
2471 2568 5.239525 ACAGTCAAAAAGGCTAGAACATGTC 59.760 40.000 0.00 0.00 0.00 3.06
2472 2569 4.762251 AGTCAAAAAGGCTAGAACATGTCC 59.238 41.667 0.00 0.00 0.00 4.02
2473 2570 4.518970 GTCAAAAAGGCTAGAACATGTCCA 59.481 41.667 0.00 0.00 0.00 4.02
2474 2571 5.183904 GTCAAAAAGGCTAGAACATGTCCAT 59.816 40.000 0.00 0.00 0.00 3.41
2475 2572 5.774690 TCAAAAAGGCTAGAACATGTCCATT 59.225 36.000 0.00 0.00 0.00 3.16
2476 2573 6.267471 TCAAAAAGGCTAGAACATGTCCATTT 59.733 34.615 0.00 0.00 0.00 2.32
2477 2574 5.649782 AAAGGCTAGAACATGTCCATTTG 57.350 39.130 0.00 0.00 0.00 2.32
2478 2575 4.307032 AGGCTAGAACATGTCCATTTGT 57.693 40.909 0.00 0.00 0.00 2.83
2479 2576 4.666512 AGGCTAGAACATGTCCATTTGTT 58.333 39.130 0.00 0.00 38.71 2.83
2480 2577 5.079643 AGGCTAGAACATGTCCATTTGTTT 58.920 37.500 0.00 0.00 36.25 2.83
2481 2578 6.245408 AGGCTAGAACATGTCCATTTGTTTA 58.755 36.000 0.00 0.00 36.25 2.01
2482 2579 6.375455 AGGCTAGAACATGTCCATTTGTTTAG 59.625 38.462 0.00 0.00 36.25 1.85
2483 2580 6.151144 GGCTAGAACATGTCCATTTGTTTAGT 59.849 38.462 0.00 0.00 36.25 2.24
2484 2581 7.335924 GGCTAGAACATGTCCATTTGTTTAGTA 59.664 37.037 0.00 0.00 36.25 1.82
2485 2582 8.893727 GCTAGAACATGTCCATTTGTTTAGTAT 58.106 33.333 0.00 0.00 36.25 2.12
2494 2591 9.111613 TGTCCATTTGTTTAGTATAAATACGGG 57.888 33.333 0.00 0.00 38.28 5.28
2495 2592 9.112725 GTCCATTTGTTTAGTATAAATACGGGT 57.887 33.333 0.00 0.00 38.28 5.28
2496 2593 9.111613 TCCATTTGTTTAGTATAAATACGGGTG 57.888 33.333 0.00 0.00 38.28 4.61
2497 2594 8.895737 CCATTTGTTTAGTATAAATACGGGTGT 58.104 33.333 0.00 0.00 38.28 4.16
2498 2595 9.710979 CATTTGTTTAGTATAAATACGGGTGTG 57.289 33.333 0.00 0.00 38.28 3.82
2499 2596 6.907206 TGTTTAGTATAAATACGGGTGTGC 57.093 37.500 0.00 0.00 38.28 4.57
2500 2597 5.816777 TGTTTAGTATAAATACGGGTGTGCC 59.183 40.000 0.00 0.00 38.28 5.01
2501 2598 5.874897 TTAGTATAAATACGGGTGTGCCT 57.125 39.130 0.00 0.00 38.28 4.75
2502 2599 6.975196 TTAGTATAAATACGGGTGTGCCTA 57.025 37.500 0.00 0.00 38.28 3.93
2503 2600 5.464030 AGTATAAATACGGGTGTGCCTAG 57.536 43.478 0.00 0.00 38.28 3.02
2504 2601 5.142639 AGTATAAATACGGGTGTGCCTAGA 58.857 41.667 0.00 0.00 38.28 2.43
2505 2602 2.981859 AAATACGGGTGTGCCTAGAG 57.018 50.000 0.00 0.00 34.45 2.43
2506 2603 1.861982 AATACGGGTGTGCCTAGAGT 58.138 50.000 0.00 0.00 34.45 3.24
2507 2604 1.112113 ATACGGGTGTGCCTAGAGTG 58.888 55.000 0.00 0.00 34.45 3.51
2508 2605 0.251474 TACGGGTGTGCCTAGAGTGT 60.251 55.000 0.00 0.00 34.45 3.55
2509 2606 1.079819 CGGGTGTGCCTAGAGTGTG 60.080 63.158 0.00 0.00 34.45 3.82
2510 2607 1.296715 GGGTGTGCCTAGAGTGTGG 59.703 63.158 0.00 0.00 34.45 4.17
2515 2612 4.695560 GCCTAGAGTGTGGCGTTT 57.304 55.556 0.00 0.00 39.71 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.653344 TGGAGTGCATCGATATAGCAAC 58.347 45.455 10.16 7.89 40.35 4.17
12 13 2.419673 TGCAGTATTTTGGAGTGCATCG 59.580 45.455 1.11 0.00 45.91 3.84
37 38 7.412563 GGGTTGTTTTGTTAGAAAAGAAGTTGC 60.413 37.037 0.00 0.00 0.00 4.17
111 113 5.711506 TGTTGTAGTGCTTGATTGGATGATT 59.288 36.000 0.00 0.00 0.00 2.57
185 187 4.703897 TGGCTTCATACACTGTAATAGGC 58.296 43.478 11.85 11.85 0.00 3.93
198 200 1.630369 ACTGGCTTCACTGGCTTCATA 59.370 47.619 0.00 0.00 0.00 2.15
204 206 2.012673 CATCTTACTGGCTTCACTGGC 58.987 52.381 0.00 0.00 0.00 4.85
205 207 2.237143 TCCATCTTACTGGCTTCACTGG 59.763 50.000 0.00 0.00 36.16 4.00
206 208 3.616956 TCCATCTTACTGGCTTCACTG 57.383 47.619 0.00 0.00 36.16 3.66
207 209 4.640771 TTTCCATCTTACTGGCTTCACT 57.359 40.909 0.00 0.00 36.16 3.41
208 210 4.518970 TGTTTTCCATCTTACTGGCTTCAC 59.481 41.667 0.00 0.00 36.16 3.18
209 211 4.518970 GTGTTTTCCATCTTACTGGCTTCA 59.481 41.667 0.00 0.00 36.16 3.02
210 212 4.518970 TGTGTTTTCCATCTTACTGGCTTC 59.481 41.667 0.00 0.00 36.16 3.86
211 213 4.469657 TGTGTTTTCCATCTTACTGGCTT 58.530 39.130 0.00 0.00 36.16 4.35
212 214 4.098914 TGTGTTTTCCATCTTACTGGCT 57.901 40.909 0.00 0.00 36.16 4.75
213 215 4.846779 TTGTGTTTTCCATCTTACTGGC 57.153 40.909 0.00 0.00 36.16 4.85
223 225 2.296471 ACCACGTTGTTTGTGTTTTCCA 59.704 40.909 0.00 0.00 35.56 3.53
224 226 2.949142 ACCACGTTGTTTGTGTTTTCC 58.051 42.857 0.00 0.00 35.56 3.13
256 260 2.149578 GCAGAAGCAGTGATGACAGTT 58.850 47.619 0.00 0.00 41.58 3.16
257 261 1.347050 AGCAGAAGCAGTGATGACAGT 59.653 47.619 0.00 0.00 45.49 3.55
258 262 1.732809 CAGCAGAAGCAGTGATGACAG 59.267 52.381 0.00 0.00 45.49 3.51
259 263 1.345415 TCAGCAGAAGCAGTGATGACA 59.655 47.619 0.00 0.00 45.49 3.58
260 264 2.090400 TCAGCAGAAGCAGTGATGAC 57.910 50.000 0.00 0.00 45.49 3.06
261 265 1.338484 GGTCAGCAGAAGCAGTGATGA 60.338 52.381 0.00 0.00 45.49 2.92
262 266 1.085091 GGTCAGCAGAAGCAGTGATG 58.915 55.000 0.00 0.00 45.49 3.07
263 267 0.982704 AGGTCAGCAGAAGCAGTGAT 59.017 50.000 0.00 0.00 45.49 3.06
264 268 0.761187 AAGGTCAGCAGAAGCAGTGA 59.239 50.000 0.00 0.00 45.49 3.41
274 278 1.067295 AGAATGGTGGAAGGTCAGCA 58.933 50.000 0.00 0.00 46.98 4.41
280 284 5.419788 TCAAATCATGAAGAATGGTGGAAGG 59.580 40.000 0.00 0.00 36.86 3.46
340 344 1.582461 GCAAACGGCGGGTTGTAAT 59.418 52.632 21.42 0.00 39.30 1.89
380 384 0.595095 CCAGAAGCTTTGGCACTGAC 59.405 55.000 12.40 0.00 42.70 3.51
497 504 9.862585 GTCAATATTTGGTTGAACAAAAATCAC 57.137 29.630 1.47 0.00 42.91 3.06
506 513 5.997385 AGACGTGTCAATATTTGGTTGAAC 58.003 37.500 0.00 0.00 37.34 3.18
510 517 7.027161 GCAATTAGACGTGTCAATATTTGGTT 58.973 34.615 0.00 0.00 0.00 3.67
522 529 5.581085 GGTCAGATTTAGCAATTAGACGTGT 59.419 40.000 0.00 0.00 31.81 4.49
637 649 4.252073 AGAATCTCTGCAGTTGCTGTTAG 58.748 43.478 14.67 0.62 42.66 2.34
774 831 3.502191 TGGATCAAGCAAAATTACCGC 57.498 42.857 0.00 0.00 0.00 5.68
851 908 1.577922 GGCGTGTGTCGTCTGACTA 59.422 57.895 6.21 0.00 45.70 2.59
941 1012 5.306394 GTTTGAAGTTTGAGCTAGGTAGGT 58.694 41.667 0.00 0.00 36.62 3.08
942 1013 4.695928 GGTTTGAAGTTTGAGCTAGGTAGG 59.304 45.833 0.00 0.00 0.00 3.18
943 1014 4.389077 CGGTTTGAAGTTTGAGCTAGGTAG 59.611 45.833 0.00 0.00 0.00 3.18
944 1015 4.039488 TCGGTTTGAAGTTTGAGCTAGGTA 59.961 41.667 0.00 0.00 0.00 3.08
959 1030 3.013921 GGTTCCAATGCTATCGGTTTGA 58.986 45.455 0.00 0.00 0.00 2.69
1194 1279 2.994995 ATGGACGACTGACCCGCA 60.995 61.111 0.00 0.00 0.00 5.69
1196 1282 2.184322 CCATGGACGACTGACCCG 59.816 66.667 5.56 0.00 0.00 5.28
1305 1391 2.997315 CACTCGTGCCCCTCTCCA 60.997 66.667 0.00 0.00 0.00 3.86
1579 1676 8.958119 ATAAACAGGTTCATCGTACATACAAT 57.042 30.769 0.00 0.00 0.00 2.71
1584 1681 9.188588 CGTATTATAAACAGGTTCATCGTACAT 57.811 33.333 0.00 0.00 0.00 2.29
1585 1682 8.404765 TCGTATTATAAACAGGTTCATCGTACA 58.595 33.333 0.00 0.00 0.00 2.90
1586 1683 8.786937 TCGTATTATAAACAGGTTCATCGTAC 57.213 34.615 0.00 0.00 0.00 3.67
1587 1684 9.800433 TTTCGTATTATAAACAGGTTCATCGTA 57.200 29.630 0.00 0.00 0.00 3.43
1588 1685 8.706492 TTTCGTATTATAAACAGGTTCATCGT 57.294 30.769 0.00 0.00 0.00 3.73
1684 1781 5.233988 TCATCGTACAACATGTGATGAACA 58.766 37.500 18.46 2.47 44.79 3.18
1685 1782 5.778161 TCATCGTACAACATGTGATGAAC 57.222 39.130 18.46 5.51 37.07 3.18
1686 1783 5.874261 ACATCATCGTACAACATGTGATGAA 59.126 36.000 22.38 11.32 40.67 2.57
1687 1784 5.418676 ACATCATCGTACAACATGTGATGA 58.581 37.500 21.37 21.37 43.30 2.92
1688 1785 5.723492 ACATCATCGTACAACATGTGATG 57.277 39.130 14.08 14.08 45.06 3.07
1689 1786 5.874261 TGAACATCATCGTACAACATGTGAT 59.126 36.000 0.00 0.00 0.00 3.06
1690 1787 5.233988 TGAACATCATCGTACAACATGTGA 58.766 37.500 0.00 0.00 0.00 3.58
1691 1788 5.120674 ACTGAACATCATCGTACAACATGTG 59.879 40.000 0.00 0.00 0.00 3.21
1692 1789 5.120674 CACTGAACATCATCGTACAACATGT 59.879 40.000 0.00 0.00 0.00 3.21
1693 1790 5.348451 TCACTGAACATCATCGTACAACATG 59.652 40.000 0.00 0.00 0.00 3.21
1694 1791 5.478407 TCACTGAACATCATCGTACAACAT 58.522 37.500 0.00 0.00 0.00 2.71
1695 1792 4.877282 TCACTGAACATCATCGTACAACA 58.123 39.130 0.00 0.00 0.00 3.33
1696 1793 5.609088 GTTCACTGAACATCATCGTACAAC 58.391 41.667 15.77 0.00 41.62 3.32
1697 1794 4.384547 CGTTCACTGAACATCATCGTACAA 59.615 41.667 19.61 0.00 42.05 2.41
1698 1795 3.917985 CGTTCACTGAACATCATCGTACA 59.082 43.478 19.61 0.00 42.05 2.90
1699 1796 3.918591 ACGTTCACTGAACATCATCGTAC 59.081 43.478 19.61 0.00 42.05 3.67
1700 1797 4.168922 ACGTTCACTGAACATCATCGTA 57.831 40.909 19.61 0.00 42.05 3.43
1701 1798 3.026630 ACGTTCACTGAACATCATCGT 57.973 42.857 19.61 9.27 42.05 3.73
1702 1799 4.389664 AAACGTTCACTGAACATCATCG 57.610 40.909 19.61 8.71 42.05 3.84
1703 1800 5.971202 ACAAAAACGTTCACTGAACATCATC 59.029 36.000 19.61 0.00 42.05 2.92
1704 1801 5.890334 ACAAAAACGTTCACTGAACATCAT 58.110 33.333 19.61 2.89 42.05 2.45
1705 1802 5.303747 ACAAAAACGTTCACTGAACATCA 57.696 34.783 19.61 0.00 42.05 3.07
1706 1803 7.908193 ATTACAAAAACGTTCACTGAACATC 57.092 32.000 19.61 0.00 42.05 3.06
1707 1804 7.858879 GGTATTACAAAAACGTTCACTGAACAT 59.141 33.333 19.61 3.74 42.05 2.71
1708 1805 7.148289 TGGTATTACAAAAACGTTCACTGAACA 60.148 33.333 19.61 0.00 42.05 3.18
1709 1806 7.188157 TGGTATTACAAAAACGTTCACTGAAC 58.812 34.615 11.37 11.37 38.97 3.18
1710 1807 7.317842 TGGTATTACAAAAACGTTCACTGAA 57.682 32.000 0.00 0.00 0.00 3.02
1711 1808 6.922247 TGGTATTACAAAAACGTTCACTGA 57.078 33.333 0.00 0.00 0.00 3.41
1712 1809 7.972623 TTTGGTATTACAAAAACGTTCACTG 57.027 32.000 0.00 1.80 37.40 3.66
1799 1896 9.358872 CATACAATATACGATGAGCAGTTGTAT 57.641 33.333 0.00 0.00 40.28 2.29
1800 1897 7.812669 CCATACAATATACGATGAGCAGTTGTA 59.187 37.037 0.00 0.00 35.89 2.41
1801 1898 6.646653 CCATACAATATACGATGAGCAGTTGT 59.353 38.462 0.00 0.00 33.62 3.32
1802 1899 6.646653 ACCATACAATATACGATGAGCAGTTG 59.353 38.462 0.00 0.00 0.00 3.16
1803 1900 6.759272 ACCATACAATATACGATGAGCAGTT 58.241 36.000 0.00 0.00 0.00 3.16
1804 1901 6.346477 ACCATACAATATACGATGAGCAGT 57.654 37.500 0.00 0.00 0.00 4.40
1805 1902 8.811378 CATTACCATACAATATACGATGAGCAG 58.189 37.037 0.00 0.00 0.00 4.24
1806 1903 8.311109 ACATTACCATACAATATACGATGAGCA 58.689 33.333 0.00 0.00 0.00 4.26
1807 1904 8.703604 ACATTACCATACAATATACGATGAGC 57.296 34.615 0.00 0.00 0.00 4.26
1812 1909 9.471084 CACTGAACATTACCATACAATATACGA 57.529 33.333 0.00 0.00 0.00 3.43
1813 1910 9.256477 ACACTGAACATTACCATACAATATACG 57.744 33.333 0.00 0.00 0.00 3.06
1818 1915 9.461312 AATACACACTGAACATTACCATACAAT 57.539 29.630 0.00 0.00 0.00 2.71
1819 1916 8.856153 AATACACACTGAACATTACCATACAA 57.144 30.769 0.00 0.00 0.00 2.41
1820 1917 8.097662 TGAATACACACTGAACATTACCATACA 58.902 33.333 0.00 0.00 0.00 2.29
1821 1918 8.388103 GTGAATACACACTGAACATTACCATAC 58.612 37.037 0.00 0.00 45.32 2.39
1822 1919 8.487313 GTGAATACACACTGAACATTACCATA 57.513 34.615 0.00 0.00 45.32 2.74
1823 1920 7.377766 GTGAATACACACTGAACATTACCAT 57.622 36.000 0.00 0.00 45.32 3.55
1824 1921 6.795098 GTGAATACACACTGAACATTACCA 57.205 37.500 0.00 0.00 45.32 3.25
1838 1935 9.158364 CAGTATGCGATATTTTTGTGAATACAC 57.842 33.333 0.00 0.00 46.09 2.90
1839 1936 9.103861 TCAGTATGCGATATTTTTGTGAATACA 57.896 29.630 0.00 0.00 34.76 2.29
1840 1937 9.929722 TTCAGTATGCGATATTTTTGTGAATAC 57.070 29.630 0.00 0.00 34.76 1.89
1842 1939 9.853555 TTTTCAGTATGCGATATTTTTGTGAAT 57.146 25.926 0.00 0.00 34.76 2.57
1843 1940 9.340695 CTTTTCAGTATGCGATATTTTTGTGAA 57.659 29.630 0.00 0.00 34.76 3.18
1844 1941 7.484641 GCTTTTCAGTATGCGATATTTTTGTGA 59.515 33.333 0.00 0.00 34.76 3.58
1845 1942 7.253750 GGCTTTTCAGTATGCGATATTTTTGTG 60.254 37.037 0.00 0.00 34.76 3.33
1846 1943 6.751888 GGCTTTTCAGTATGCGATATTTTTGT 59.248 34.615 0.00 0.00 34.76 2.83
1847 1944 6.198966 GGGCTTTTCAGTATGCGATATTTTTG 59.801 38.462 0.00 0.00 34.76 2.44
1848 1945 6.127479 TGGGCTTTTCAGTATGCGATATTTTT 60.127 34.615 0.00 0.00 34.76 1.94
1849 1946 5.359576 TGGGCTTTTCAGTATGCGATATTTT 59.640 36.000 0.00 0.00 34.76 1.82
1850 1947 4.887071 TGGGCTTTTCAGTATGCGATATTT 59.113 37.500 0.00 0.00 34.76 1.40
1851 1948 4.275936 GTGGGCTTTTCAGTATGCGATATT 59.724 41.667 0.00 0.00 34.76 1.28
1852 1949 3.815401 GTGGGCTTTTCAGTATGCGATAT 59.185 43.478 0.00 0.00 34.76 1.63
1853 1950 3.118408 AGTGGGCTTTTCAGTATGCGATA 60.118 43.478 0.00 0.00 34.76 2.92
1854 1951 2.017049 GTGGGCTTTTCAGTATGCGAT 58.983 47.619 0.00 0.00 34.76 4.58
1855 1952 1.003118 AGTGGGCTTTTCAGTATGCGA 59.997 47.619 0.00 0.00 34.76 5.10
1856 1953 1.131126 CAGTGGGCTTTTCAGTATGCG 59.869 52.381 0.00 0.00 34.76 4.73
1857 1954 2.436417 TCAGTGGGCTTTTCAGTATGC 58.564 47.619 0.00 0.00 34.76 3.14
1858 1955 5.649782 AATTCAGTGGGCTTTTCAGTATG 57.350 39.130 0.00 0.00 37.54 2.39
1859 1956 6.670695 AAAATTCAGTGGGCTTTTCAGTAT 57.329 33.333 0.00 0.00 0.00 2.12
1860 1957 6.478512 AAAAATTCAGTGGGCTTTTCAGTA 57.521 33.333 0.00 0.00 0.00 2.74
1861 1958 5.357742 AAAAATTCAGTGGGCTTTTCAGT 57.642 34.783 0.00 0.00 0.00 3.41
1889 1986 9.260002 GGACACTTTTTCAATATTGTCAACATT 57.740 29.630 14.97 0.00 36.00 2.71
1890 1987 8.641541 AGGACACTTTTTCAATATTGTCAACAT 58.358 29.630 14.97 0.00 36.00 2.71
1891 1988 8.006298 AGGACACTTTTTCAATATTGTCAACA 57.994 30.769 14.97 2.86 36.00 3.33
1892 1989 9.394477 GTAGGACACTTTTTCAATATTGTCAAC 57.606 33.333 14.97 3.02 36.00 3.18
1893 1990 9.126151 TGTAGGACACTTTTTCAATATTGTCAA 57.874 29.630 14.97 6.98 36.00 3.18
1894 1991 8.564574 GTGTAGGACACTTTTTCAATATTGTCA 58.435 33.333 14.97 1.00 45.27 3.58
1895 1992 8.950403 GTGTAGGACACTTTTTCAATATTGTC 57.050 34.615 14.97 3.60 45.27 3.18
1917 2014 9.531942 CACCATGCAAAATTGTATAATATGTGT 57.468 29.630 0.00 0.00 32.12 3.72
1918 2015 9.531942 ACACCATGCAAAATTGTATAATATGTG 57.468 29.630 0.00 0.00 32.12 3.21
1926 2023 9.316730 GATTCATAACACCATGCAAAATTGTAT 57.683 29.630 0.00 0.00 33.65 2.29
1927 2024 8.530311 AGATTCATAACACCATGCAAAATTGTA 58.470 29.630 0.00 0.00 0.00 2.41
1928 2025 7.388437 AGATTCATAACACCATGCAAAATTGT 58.612 30.769 0.00 0.00 0.00 2.71
1929 2026 7.837202 AGATTCATAACACCATGCAAAATTG 57.163 32.000 0.00 0.00 0.00 2.32
1930 2027 7.701924 CGTAGATTCATAACACCATGCAAAATT 59.298 33.333 0.00 0.00 0.00 1.82
1931 2028 7.066887 TCGTAGATTCATAACACCATGCAAAAT 59.933 33.333 0.00 0.00 0.00 1.82
1932 2029 6.372937 TCGTAGATTCATAACACCATGCAAAA 59.627 34.615 0.00 0.00 0.00 2.44
1933 2030 5.877564 TCGTAGATTCATAACACCATGCAAA 59.122 36.000 0.00 0.00 0.00 3.68
1934 2031 5.423886 TCGTAGATTCATAACACCATGCAA 58.576 37.500 0.00 0.00 0.00 4.08
1935 2032 5.017294 TCGTAGATTCATAACACCATGCA 57.983 39.130 0.00 0.00 0.00 3.96
1936 2033 5.984233 TTCGTAGATTCATAACACCATGC 57.016 39.130 0.00 0.00 35.04 4.06
1937 2034 7.910162 CCTTTTTCGTAGATTCATAACACCATG 59.090 37.037 0.00 0.00 35.04 3.66
1938 2035 7.067008 CCCTTTTTCGTAGATTCATAACACCAT 59.933 37.037 0.00 0.00 35.04 3.55
1939 2036 6.373216 CCCTTTTTCGTAGATTCATAACACCA 59.627 38.462 0.00 0.00 35.04 4.17
1940 2037 6.677187 GCCCTTTTTCGTAGATTCATAACACC 60.677 42.308 0.00 0.00 35.04 4.16
1941 2038 6.255950 GCCCTTTTTCGTAGATTCATAACAC 58.744 40.000 0.00 0.00 35.04 3.32
1942 2039 5.355910 GGCCCTTTTTCGTAGATTCATAACA 59.644 40.000 0.00 0.00 35.04 2.41
1943 2040 5.220989 GGGCCCTTTTTCGTAGATTCATAAC 60.221 44.000 17.04 0.00 35.04 1.89
1944 2041 4.885325 GGGCCCTTTTTCGTAGATTCATAA 59.115 41.667 17.04 0.00 35.04 1.90
1945 2042 4.165372 AGGGCCCTTTTTCGTAGATTCATA 59.835 41.667 22.28 0.00 35.04 2.15
1946 2043 3.053619 AGGGCCCTTTTTCGTAGATTCAT 60.054 43.478 22.28 0.00 35.04 2.57
1947 2044 2.307686 AGGGCCCTTTTTCGTAGATTCA 59.692 45.455 22.28 0.00 35.04 2.57
1948 2045 3.000684 AGGGCCCTTTTTCGTAGATTC 57.999 47.619 22.28 0.00 35.04 2.52
1949 2046 3.264964 TGTAGGGCCCTTTTTCGTAGATT 59.735 43.478 34.04 2.35 35.04 2.40
1950 2047 2.841881 TGTAGGGCCCTTTTTCGTAGAT 59.158 45.455 34.04 2.60 35.04 1.98
1951 2048 2.259012 TGTAGGGCCCTTTTTCGTAGA 58.741 47.619 34.04 5.15 0.00 2.59
1952 2049 2.773993 TGTAGGGCCCTTTTTCGTAG 57.226 50.000 34.04 0.00 0.00 3.51
1953 2050 6.691255 ATATATGTAGGGCCCTTTTTCGTA 57.309 37.500 34.04 21.82 0.00 3.43
1954 2051 3.945640 ATATGTAGGGCCCTTTTTCGT 57.054 42.857 34.04 20.45 0.00 3.85
1955 2052 5.768164 ACAATATATGTAGGGCCCTTTTTCG 59.232 40.000 34.04 12.32 41.63 3.46
2029 2126 9.624697 CCGCATACAAAAATTATACTGCATATT 57.375 29.630 0.00 0.00 0.00 1.28
2030 2127 8.792633 ACCGCATACAAAAATTATACTGCATAT 58.207 29.630 0.00 0.00 0.00 1.78
2031 2128 8.160521 ACCGCATACAAAAATTATACTGCATA 57.839 30.769 0.00 0.00 0.00 3.14
2032 2129 7.038154 ACCGCATACAAAAATTATACTGCAT 57.962 32.000 0.00 0.00 0.00 3.96
2033 2130 6.443934 ACCGCATACAAAAATTATACTGCA 57.556 33.333 0.00 0.00 0.00 4.41
2093 2190 8.796475 ACAGTCACTGCATACTATTGAAAAATT 58.204 29.630 4.13 0.00 34.37 1.82
2094 2191 8.239314 CACAGTCACTGCATACTATTGAAAAAT 58.761 33.333 4.13 0.00 34.37 1.82
2095 2192 7.443879 TCACAGTCACTGCATACTATTGAAAAA 59.556 33.333 4.13 0.00 34.37 1.94
2096 2193 6.934083 TCACAGTCACTGCATACTATTGAAAA 59.066 34.615 4.13 0.00 34.37 2.29
2097 2194 6.463360 TCACAGTCACTGCATACTATTGAAA 58.537 36.000 4.13 0.00 34.37 2.69
2098 2195 6.036577 TCACAGTCACTGCATACTATTGAA 57.963 37.500 4.13 0.00 34.37 2.69
2099 2196 5.659440 TCACAGTCACTGCATACTATTGA 57.341 39.130 4.13 0.00 34.37 2.57
2100 2197 5.871524 AGTTCACAGTCACTGCATACTATTG 59.128 40.000 4.13 0.00 34.37 1.90
2101 2198 6.042638 AGTTCACAGTCACTGCATACTATT 57.957 37.500 4.13 0.00 34.37 1.73
2102 2199 5.667539 AGTTCACAGTCACTGCATACTAT 57.332 39.130 4.13 0.00 34.37 2.12
2103 2200 6.775594 ATAGTTCACAGTCACTGCATACTA 57.224 37.500 4.13 9.98 34.37 1.82
2104 2201 5.667539 ATAGTTCACAGTCACTGCATACT 57.332 39.130 4.13 8.03 34.37 2.12
2105 2202 6.565234 AGTATAGTTCACAGTCACTGCATAC 58.435 40.000 4.13 0.00 34.37 2.39
2106 2203 6.775594 AGTATAGTTCACAGTCACTGCATA 57.224 37.500 4.13 0.00 34.37 3.14
2107 2204 5.667539 AGTATAGTTCACAGTCACTGCAT 57.332 39.130 4.13 0.00 34.37 3.96
2108 2205 5.468540 AAGTATAGTTCACAGTCACTGCA 57.531 39.130 4.13 0.00 34.37 4.41
2109 2206 6.787085 AAAAGTATAGTTCACAGTCACTGC 57.213 37.500 4.13 0.00 34.37 4.40
2110 2207 8.365399 TGAAAAAGTATAGTTCACAGTCACTG 57.635 34.615 2.22 2.22 37.52 3.66
2111 2208 7.657761 CCTGAAAAAGTATAGTTCACAGTCACT 59.342 37.037 14.44 0.00 0.00 3.41
2112 2209 7.571428 GCCTGAAAAAGTATAGTTCACAGTCAC 60.571 40.741 14.44 6.02 0.00 3.67
2113 2210 6.426937 GCCTGAAAAAGTATAGTTCACAGTCA 59.573 38.462 14.44 6.17 0.00 3.41
2114 2211 6.426937 TGCCTGAAAAAGTATAGTTCACAGTC 59.573 38.462 14.44 7.46 0.00 3.51
2115 2212 6.204882 GTGCCTGAAAAAGTATAGTTCACAGT 59.795 38.462 14.44 0.00 0.00 3.55
2116 2213 6.428159 AGTGCCTGAAAAAGTATAGTTCACAG 59.572 38.462 8.10 9.77 0.00 3.66
2117 2214 6.204688 CAGTGCCTGAAAAAGTATAGTTCACA 59.795 38.462 8.10 2.99 32.44 3.58
2118 2215 6.204882 ACAGTGCCTGAAAAAGTATAGTTCAC 59.795 38.462 8.91 0.00 35.18 3.18
2119 2216 6.204688 CACAGTGCCTGAAAAAGTATAGTTCA 59.795 38.462 8.91 0.00 35.18 3.18
2120 2217 6.204882 ACACAGTGCCTGAAAAAGTATAGTTC 59.795 38.462 0.00 0.00 35.18 3.01
2121 2218 6.062095 ACACAGTGCCTGAAAAAGTATAGTT 58.938 36.000 0.00 0.00 35.18 2.24
2122 2219 5.621193 ACACAGTGCCTGAAAAAGTATAGT 58.379 37.500 0.00 0.00 35.18 2.12
2123 2220 7.849804 ATACACAGTGCCTGAAAAAGTATAG 57.150 36.000 0.00 0.00 35.18 1.31
2124 2221 8.630054 AAATACACAGTGCCTGAAAAAGTATA 57.370 30.769 0.00 0.00 35.18 1.47
2125 2222 7.524717 AAATACACAGTGCCTGAAAAAGTAT 57.475 32.000 0.00 6.33 35.18 2.12
2126 2223 6.952773 AAATACACAGTGCCTGAAAAAGTA 57.047 33.333 0.00 4.77 35.18 2.24
2127 2224 5.852282 AAATACACAGTGCCTGAAAAAGT 57.148 34.783 0.00 3.14 35.18 2.66
2128 2225 6.734137 TGTAAATACACAGTGCCTGAAAAAG 58.266 36.000 0.00 0.00 35.18 2.27
2129 2226 6.701145 TGTAAATACACAGTGCCTGAAAAA 57.299 33.333 0.00 0.00 35.18 1.94
2130 2227 6.701145 TTGTAAATACACAGTGCCTGAAAA 57.299 33.333 0.00 0.00 35.64 2.29
2131 2228 6.892658 ATTGTAAATACACAGTGCCTGAAA 57.107 33.333 0.00 0.00 35.64 2.69
2132 2229 9.845740 ATATATTGTAAATACACAGTGCCTGAA 57.154 29.630 0.00 0.00 35.64 3.02
2151 2248 8.750298 AGAACGGAGGGAGTACAATATATATTG 58.250 37.037 26.83 26.83 46.41 1.90
2152 2249 8.896722 AGAACGGAGGGAGTACAATATATATT 57.103 34.615 1.91 1.91 0.00 1.28
2153 2250 8.114102 TGAGAACGGAGGGAGTACAATATATAT 58.886 37.037 0.00 0.00 0.00 0.86
2154 2251 7.464273 TGAGAACGGAGGGAGTACAATATATA 58.536 38.462 0.00 0.00 0.00 0.86
2155 2252 6.312529 TGAGAACGGAGGGAGTACAATATAT 58.687 40.000 0.00 0.00 0.00 0.86
2156 2253 5.698104 TGAGAACGGAGGGAGTACAATATA 58.302 41.667 0.00 0.00 0.00 0.86
2157 2254 4.543689 TGAGAACGGAGGGAGTACAATAT 58.456 43.478 0.00 0.00 0.00 1.28
2158 2255 3.972133 TGAGAACGGAGGGAGTACAATA 58.028 45.455 0.00 0.00 0.00 1.90
2159 2256 2.816411 TGAGAACGGAGGGAGTACAAT 58.184 47.619 0.00 0.00 0.00 2.71
2160 2257 2.297698 TGAGAACGGAGGGAGTACAA 57.702 50.000 0.00 0.00 0.00 2.41
2161 2258 2.297698 TTGAGAACGGAGGGAGTACA 57.702 50.000 0.00 0.00 0.00 2.90
2162 2259 3.889520 ATTTGAGAACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
2163 2260 6.070424 ACAAATATTTGAGAACGGAGGGAGTA 60.070 38.462 30.18 0.00 40.55 2.59
2164 2261 5.186198 CAAATATTTGAGAACGGAGGGAGT 58.814 41.667 21.35 0.00 40.55 3.85
2165 2262 5.186198 ACAAATATTTGAGAACGGAGGGAG 58.814 41.667 30.18 3.44 40.55 4.30
2166 2263 5.045869 AGACAAATATTTGAGAACGGAGGGA 60.046 40.000 30.18 0.00 40.55 4.20
2167 2264 5.186198 AGACAAATATTTGAGAACGGAGGG 58.814 41.667 30.18 4.03 40.55 4.30
2168 2265 6.743575 AAGACAAATATTTGAGAACGGAGG 57.256 37.500 30.18 4.51 40.55 4.30
2169 2266 8.034058 AGAAAGACAAATATTTGAGAACGGAG 57.966 34.615 30.18 5.19 40.55 4.63
2170 2267 7.979444 AGAAAGACAAATATTTGAGAACGGA 57.021 32.000 30.18 0.00 40.55 4.69
2171 2268 9.151471 TCTAGAAAGACAAATATTTGAGAACGG 57.849 33.333 30.18 14.46 40.55 4.44
2184 2281 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2185 2282 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2186 2283 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2187 2284 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2188 2285 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2189 2286 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2190 2287 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2191 2288 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2192 2289 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2193 2290 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2200 2297 9.278978 TGCTTTATATGTAGTCACTTGTTGAAA 57.721 29.630 0.00 0.00 35.39 2.69
2201 2298 8.840833 TGCTTTATATGTAGTCACTTGTTGAA 57.159 30.769 0.00 0.00 35.39 2.69
2202 2299 8.840833 TTGCTTTATATGTAGTCACTTGTTGA 57.159 30.769 0.00 0.00 0.00 3.18
2203 2300 9.891828 TTTTGCTTTATATGTAGTCACTTGTTG 57.108 29.630 0.00 0.00 0.00 3.33
2208 2305 9.672673 ACTCATTTTGCTTTATATGTAGTCACT 57.327 29.630 0.00 0.00 0.00 3.41
2209 2306 9.708222 CACTCATTTTGCTTTATATGTAGTCAC 57.292 33.333 0.00 0.00 0.00 3.67
2210 2307 9.665719 TCACTCATTTTGCTTTATATGTAGTCA 57.334 29.630 0.00 0.00 0.00 3.41
2221 2318 8.632679 TGAGTTTAGATTCACTCATTTTGCTTT 58.367 29.630 0.00 0.00 43.63 3.51
2222 2319 8.169977 TGAGTTTAGATTCACTCATTTTGCTT 57.830 30.769 0.00 0.00 43.63 3.91
2223 2320 7.750229 TGAGTTTAGATTCACTCATTTTGCT 57.250 32.000 0.00 0.00 43.63 3.91
2224 2321 8.801715 TTTGAGTTTAGATTCACTCATTTTGC 57.198 30.769 2.96 0.00 46.86 3.68
2258 2355 9.890629 AATGGACTATAACATGCGAATGTATAT 57.109 29.630 10.11 11.87 33.81 0.86
2259 2356 9.719355 AAATGGACTATAACATGCGAATGTATA 57.281 29.630 10.11 5.25 33.81 1.47
2260 2357 8.506437 CAAATGGACTATAACATGCGAATGTAT 58.494 33.333 10.11 6.59 33.81 2.29
2261 2358 7.713073 TCAAATGGACTATAACATGCGAATGTA 59.287 33.333 10.11 0.00 33.81 2.29
2262 2359 6.542005 TCAAATGGACTATAACATGCGAATGT 59.458 34.615 2.13 2.13 36.10 2.71
2263 2360 6.958255 TCAAATGGACTATAACATGCGAATG 58.042 36.000 0.40 0.40 0.00 2.67
2264 2361 7.566760 TTCAAATGGACTATAACATGCGAAT 57.433 32.000 0.00 0.00 0.00 3.34
2265 2362 6.993786 TTCAAATGGACTATAACATGCGAA 57.006 33.333 0.00 0.00 0.00 4.70
2266 2363 6.993786 TTTCAAATGGACTATAACATGCGA 57.006 33.333 0.00 0.00 0.00 5.10
2267 2364 7.195646 ACATTTCAAATGGACTATAACATGCG 58.804 34.615 14.70 0.00 0.00 4.73
2268 2365 8.408601 AGACATTTCAAATGGACTATAACATGC 58.591 33.333 14.70 0.00 0.00 4.06
2299 2396 9.533831 ACTTCCTATGTTTCCAAATATTTGTCT 57.466 29.630 23.24 6.93 36.45 3.41
2346 2443 9.330737 GCAGTGTGCGTATCGTATATCGAAAAA 62.331 40.741 0.00 0.00 42.30 1.94
2347 2444 7.960706 GCAGTGTGCGTATCGTATATCGAAAA 61.961 42.308 0.00 0.00 42.30 2.29
2348 2445 6.562284 GCAGTGTGCGTATCGTATATCGAAA 61.562 44.000 0.00 0.00 42.30 3.46
2349 2446 5.132073 GCAGTGTGCGTATCGTATATCGAA 61.132 45.833 0.00 0.00 42.30 3.71
2350 2447 3.666111 GCAGTGTGCGTATCGTATATCGA 60.666 47.826 0.00 0.00 42.83 3.59
2351 2448 2.588539 GCAGTGTGCGTATCGTATATCG 59.411 50.000 0.00 0.00 35.56 2.92
2364 2461 2.587322 TAGGGCCGTATGCAGTGTGC 62.587 60.000 0.00 0.00 45.29 4.57
2365 2462 0.107897 TTAGGGCCGTATGCAGTGTG 60.108 55.000 5.89 0.00 43.89 3.82
2366 2463 0.178068 CTTAGGGCCGTATGCAGTGT 59.822 55.000 5.89 0.00 43.89 3.55
2367 2464 0.464036 TCTTAGGGCCGTATGCAGTG 59.536 55.000 5.89 0.00 43.89 3.66
2368 2465 1.200519 TTCTTAGGGCCGTATGCAGT 58.799 50.000 5.89 0.00 43.89 4.40
2369 2466 2.550830 ATTCTTAGGGCCGTATGCAG 57.449 50.000 5.89 1.06 43.89 4.41
2370 2467 2.038033 GGTATTCTTAGGGCCGTATGCA 59.962 50.000 5.89 0.00 43.89 3.96
2371 2468 2.038033 TGGTATTCTTAGGGCCGTATGC 59.962 50.000 5.89 0.00 40.16 3.14
2372 2469 4.039973 TCTTGGTATTCTTAGGGCCGTATG 59.960 45.833 5.89 8.96 0.00 2.39
2373 2470 4.228824 TCTTGGTATTCTTAGGGCCGTAT 58.771 43.478 5.89 0.00 0.00 3.06
2374 2471 3.645434 TCTTGGTATTCTTAGGGCCGTA 58.355 45.455 0.00 0.00 0.00 4.02
2375 2472 2.474112 TCTTGGTATTCTTAGGGCCGT 58.526 47.619 2.24 2.24 0.00 5.68
2376 2473 3.325135 AGATCTTGGTATTCTTAGGGCCG 59.675 47.826 0.00 0.00 0.00 6.13
2377 2474 4.348168 TCAGATCTTGGTATTCTTAGGGCC 59.652 45.833 0.00 0.00 0.00 5.80
2378 2475 5.552870 TCAGATCTTGGTATTCTTAGGGC 57.447 43.478 0.00 0.00 0.00 5.19
2379 2476 8.807948 TTTTTCAGATCTTGGTATTCTTAGGG 57.192 34.615 0.00 0.00 0.00 3.53
2436 2533 6.093909 AGCCTTTTTGACTGTTCCAATTTTTG 59.906 34.615 0.00 0.00 0.00 2.44
2437 2534 6.179756 AGCCTTTTTGACTGTTCCAATTTTT 58.820 32.000 0.00 0.00 0.00 1.94
2438 2535 5.744171 AGCCTTTTTGACTGTTCCAATTTT 58.256 33.333 0.00 0.00 0.00 1.82
2439 2536 5.357742 AGCCTTTTTGACTGTTCCAATTT 57.642 34.783 0.00 0.00 0.00 1.82
2440 2537 5.833131 TCTAGCCTTTTTGACTGTTCCAATT 59.167 36.000 0.00 0.00 0.00 2.32
2441 2538 5.385198 TCTAGCCTTTTTGACTGTTCCAAT 58.615 37.500 0.00 0.00 0.00 3.16
2442 2539 4.787551 TCTAGCCTTTTTGACTGTTCCAA 58.212 39.130 0.00 0.00 0.00 3.53
2443 2540 4.431416 TCTAGCCTTTTTGACTGTTCCA 57.569 40.909 0.00 0.00 0.00 3.53
2444 2541 4.578928 TGTTCTAGCCTTTTTGACTGTTCC 59.421 41.667 0.00 0.00 0.00 3.62
2445 2542 5.751243 TGTTCTAGCCTTTTTGACTGTTC 57.249 39.130 0.00 0.00 0.00 3.18
2446 2543 5.594317 ACATGTTCTAGCCTTTTTGACTGTT 59.406 36.000 0.00 0.00 0.00 3.16
2447 2544 5.133221 ACATGTTCTAGCCTTTTTGACTGT 58.867 37.500 0.00 0.00 0.00 3.55
2448 2545 5.335191 GGACATGTTCTAGCCTTTTTGACTG 60.335 44.000 0.00 0.00 0.00 3.51
2449 2546 4.762251 GGACATGTTCTAGCCTTTTTGACT 59.238 41.667 0.00 0.00 0.00 3.41
2450 2547 4.518970 TGGACATGTTCTAGCCTTTTTGAC 59.481 41.667 5.55 0.00 0.00 3.18
2451 2548 4.724399 TGGACATGTTCTAGCCTTTTTGA 58.276 39.130 5.55 0.00 0.00 2.69
2452 2549 5.649782 ATGGACATGTTCTAGCCTTTTTG 57.350 39.130 5.55 0.00 0.00 2.44
2453 2550 6.041979 ACAAATGGACATGTTCTAGCCTTTTT 59.958 34.615 5.55 1.82 0.00 1.94
2454 2551 5.539955 ACAAATGGACATGTTCTAGCCTTTT 59.460 36.000 5.55 7.06 0.00 2.27
2455 2552 5.079643 ACAAATGGACATGTTCTAGCCTTT 58.920 37.500 5.55 1.05 0.00 3.11
2456 2553 4.666512 ACAAATGGACATGTTCTAGCCTT 58.333 39.130 5.55 0.00 0.00 4.35
2457 2554 4.307032 ACAAATGGACATGTTCTAGCCT 57.693 40.909 5.55 0.00 0.00 4.58
2458 2555 5.391312 AAACAAATGGACATGTTCTAGCC 57.609 39.130 5.55 0.00 38.75 3.93
2459 2556 7.145932 ACTAAACAAATGGACATGTTCTAGC 57.854 36.000 5.55 0.00 38.75 3.42
2468 2565 9.111613 CCCGTATTTATACTAAACAAATGGACA 57.888 33.333 0.00 0.00 0.00 4.02
2469 2566 9.112725 ACCCGTATTTATACTAAACAAATGGAC 57.887 33.333 0.00 0.00 0.00 4.02
2470 2567 9.111613 CACCCGTATTTATACTAAACAAATGGA 57.888 33.333 0.00 0.00 0.00 3.41
2471 2568 8.895737 ACACCCGTATTTATACTAAACAAATGG 58.104 33.333 0.00 0.00 0.00 3.16
2472 2569 9.710979 CACACCCGTATTTATACTAAACAAATG 57.289 33.333 0.00 0.00 0.00 2.32
2473 2570 8.400186 GCACACCCGTATTTATACTAAACAAAT 58.600 33.333 0.00 0.00 0.00 2.32
2474 2571 7.148272 GGCACACCCGTATTTATACTAAACAAA 60.148 37.037 0.00 0.00 0.00 2.83
2475 2572 6.315891 GGCACACCCGTATTTATACTAAACAA 59.684 38.462 0.00 0.00 0.00 2.83
2476 2573 5.816777 GGCACACCCGTATTTATACTAAACA 59.183 40.000 0.00 0.00 0.00 2.83
2477 2574 6.051074 AGGCACACCCGTATTTATACTAAAC 58.949 40.000 0.00 0.00 39.21 2.01
2478 2575 6.237887 AGGCACACCCGTATTTATACTAAA 57.762 37.500 0.00 0.00 39.21 1.85
2479 2576 5.874897 AGGCACACCCGTATTTATACTAA 57.125 39.130 0.00 0.00 39.21 2.24
2480 2577 6.306199 TCTAGGCACACCCGTATTTATACTA 58.694 40.000 0.00 0.00 39.21 1.82
2481 2578 5.142639 TCTAGGCACACCCGTATTTATACT 58.857 41.667 0.00 0.00 39.21 2.12
2482 2579 5.010415 ACTCTAGGCACACCCGTATTTATAC 59.990 44.000 0.00 0.00 39.21 1.47
2483 2580 5.010314 CACTCTAGGCACACCCGTATTTATA 59.990 44.000 0.00 0.00 39.21 0.98
2484 2581 3.965347 ACTCTAGGCACACCCGTATTTAT 59.035 43.478 0.00 0.00 39.21 1.40
2485 2582 3.131577 CACTCTAGGCACACCCGTATTTA 59.868 47.826 0.00 0.00 39.21 1.40
2486 2583 2.093658 CACTCTAGGCACACCCGTATTT 60.094 50.000 0.00 0.00 39.21 1.40
2487 2584 1.480954 CACTCTAGGCACACCCGTATT 59.519 52.381 0.00 0.00 39.21 1.89
2488 2585 1.112113 CACTCTAGGCACACCCGTAT 58.888 55.000 0.00 0.00 39.21 3.06
2489 2586 0.251474 ACACTCTAGGCACACCCGTA 60.251 55.000 0.00 0.00 39.21 4.02
2490 2587 1.533273 ACACTCTAGGCACACCCGT 60.533 57.895 0.00 0.00 39.21 5.28
2491 2588 1.079819 CACACTCTAGGCACACCCG 60.080 63.158 0.00 0.00 39.21 5.28
2492 2589 1.296715 CCACACTCTAGGCACACCC 59.703 63.158 0.00 0.00 36.11 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.