Multiple sequence alignment - TraesCS7B01G235400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G235400 chr7B 100.000 2968 0 0 1 2968 439671282 439674249 0.000000e+00 5481.0
1 TraesCS7B01G235400 chr7B 92.164 268 20 1 10 276 221266394 221266127 7.770000e-101 377.0
2 TraesCS7B01G235400 chr7B 91.045 268 23 1 8 275 470173939 470173673 7.820000e-96 361.0
3 TraesCS7B01G235400 chr7B 92.562 121 9 0 2687 2807 151060100 151059980 1.090000e-39 174.0
4 TraesCS7B01G235400 chr7B 90.840 131 10 2 2225 2354 635493278 635493407 1.090000e-39 174.0
5 TraesCS7B01G235400 chr7B 89.706 136 13 1 2224 2358 506381082 506381217 3.930000e-39 172.0
6 TraesCS7B01G235400 chr7D 93.899 1967 107 11 275 2229 422672459 422674424 0.000000e+00 2955.0
7 TraesCS7B01G235400 chr7D 90.975 277 24 1 1 277 574211508 574211783 3.610000e-99 372.0
8 TraesCS7B01G235400 chr7D 90.909 275 25 0 1 275 506734375 506734649 1.300000e-98 370.0
9 TraesCS7B01G235400 chr7D 89.091 165 11 5 2806 2968 326052598 326052757 6.490000e-47 198.0
10 TraesCS7B01G235400 chr7D 89.091 165 10 5 2806 2968 550550732 550550890 6.490000e-47 198.0
11 TraesCS7B01G235400 chr7D 92.562 121 9 0 2687 2807 182564513 182564393 1.090000e-39 174.0
12 TraesCS7B01G235400 chr7D 88.732 142 12 4 2228 2366 371790286 371790146 1.410000e-38 171.0
13 TraesCS7B01G235400 chr7D 96.591 88 3 0 2350 2437 422674424 422674511 2.380000e-31 147.0
14 TraesCS7B01G235400 chr7D 83.516 91 15 0 526 616 461627873 461627783 5.270000e-13 86.1
15 TraesCS7B01G235400 chr7D 80.734 109 20 1 521 628 507792538 507792646 1.900000e-12 84.2
16 TraesCS7B01G235400 chr7D 85.965 57 7 1 518 574 3373064 3373119 3.190000e-05 60.2
17 TraesCS7B01G235400 chr7A 90.299 1371 63 20 877 2222 510496325 510495000 0.000000e+00 1731.0
18 TraesCS7B01G235400 chr7A 85.782 211 13 8 2459 2666 510494754 510494558 1.080000e-49 207.0
19 TraesCS7B01G235400 chr7A 97.183 71 2 0 818 888 510496508 510496438 1.440000e-23 121.0
20 TraesCS7B01G235400 chr5D 91.697 277 23 0 1 277 23080393 23080117 4.640000e-103 385.0
21 TraesCS7B01G235400 chr5D 91.275 149 10 2 2822 2968 324227914 324227767 1.800000e-47 200.0
22 TraesCS7B01G235400 chr5D 90.604 149 10 3 2822 2968 342701734 342701588 8.390000e-46 195.0
23 TraesCS7B01G235400 chr5D 78.182 110 21 3 521 628 163994079 163994187 1.910000e-07 67.6
24 TraesCS7B01G235400 chr6D 91.304 276 23 1 1 276 319688862 319688588 2.790000e-100 375.0
25 TraesCS7B01G235400 chr6A 90.942 276 25 0 1 276 457378829 457378554 3.610000e-99 372.0
26 TraesCS7B01G235400 chr4D 90.909 275 23 2 1 275 395495444 395495172 4.670000e-98 368.0
27 TraesCS7B01G235400 chr4D 90.182 275 26 1 1 275 479269169 479269442 1.010000e-94 357.0
28 TraesCS7B01G235400 chr6B 89.697 165 10 5 2806 2968 211812200 211812041 1.390000e-48 204.0
29 TraesCS7B01G235400 chr6B 90.909 132 9 3 2227 2356 202127039 202126909 1.090000e-39 174.0
30 TraesCS7B01G235400 chr6B 80.556 108 18 3 521 626 44085601 44085707 2.450000e-11 80.5
31 TraesCS7B01G235400 chr5B 90.604 149 11 3 2822 2968 383284905 383284758 8.390000e-46 195.0
32 TraesCS7B01G235400 chr5B 80.556 108 20 1 521 628 653390943 653390837 6.820000e-12 82.4
33 TraesCS7B01G235400 chr1D 88.485 165 11 6 2806 2968 487781124 487781282 3.020000e-45 193.0
34 TraesCS7B01G235400 chr1B 87.879 165 14 4 2806 2968 608043090 608043250 3.910000e-44 189.0
35 TraesCS7B01G235400 chr1B 91.791 134 10 1 2228 2360 409879935 409879802 5.050000e-43 185.0
36 TraesCS7B01G235400 chr1B 92.248 129 7 3 2227 2353 169937658 169937785 2.350000e-41 180.0
37 TraesCS7B01G235400 chr1B 92.188 128 9 1 2228 2354 172000238 172000111 2.350000e-41 180.0
38 TraesCS7B01G235400 chr1B 91.473 129 9 2 2227 2354 1440639 1440512 3.040000e-40 176.0
39 TraesCS7B01G235400 chr1B 82.727 110 17 2 521 628 35398454 35398345 2.440000e-16 97.1
40 TraesCS7B01G235400 chr3D 90.210 143 14 0 2666 2808 598253797 598253939 1.400000e-43 187.0
41 TraesCS7B01G235400 chr2A 87.879 165 13 5 2806 2968 479823203 479823362 1.400000e-43 187.0
42 TraesCS7B01G235400 chr2A 82.609 115 17 3 514 627 764891183 764891295 6.770000e-17 99.0
43 TraesCS7B01G235400 chrUn 92.248 129 9 1 2227 2354 191163435 191163307 6.540000e-42 182.0
44 TraesCS7B01G235400 chr4B 92.857 126 8 1 2228 2353 132331179 132331055 6.540000e-42 182.0
45 TraesCS7B01G235400 chr3B 92.248 129 9 1 2227 2354 778740082 778739954 6.540000e-42 182.0
46 TraesCS7B01G235400 chr4A 90.769 130 11 1 2228 2356 634267343 634267214 3.930000e-39 172.0
47 TraesCS7B01G235400 chr4A 80.909 110 18 3 521 628 11180594 11180702 1.900000e-12 84.2
48 TraesCS7B01G235400 chr4A 80.180 111 17 4 521 628 6495154 6495262 8.820000e-11 78.7
49 TraesCS7B01G235400 chr4A 79.817 109 20 2 521 627 739419273 739419381 8.820000e-11 78.7
50 TraesCS7B01G235400 chr1A 88.194 144 17 0 2665 2808 504257612 504257755 3.930000e-39 172.0
51 TraesCS7B01G235400 chr1A 88.462 130 15 0 2679 2808 534950066 534950195 1.100000e-34 158.0
52 TraesCS7B01G235400 chr5A 88.489 139 14 2 2219 2356 36944506 36944643 1.830000e-37 167.0
53 TraesCS7B01G235400 chr3A 88.889 135 15 0 2674 2808 503850250 503850116 1.830000e-37 167.0
54 TraesCS7B01G235400 chr3A 80.909 110 18 3 521 628 549273077 549273185 1.900000e-12 84.2
55 TraesCS7B01G235400 chr2D 77.586 116 23 3 515 627 21315876 21315991 1.910000e-07 67.6
56 TraesCS7B01G235400 chr2D 97.143 35 1 0 521 555 553758930 553758964 3.190000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G235400 chr7B 439671282 439674249 2967 False 5481.000000 5481 100.000 1 2968 1 chr7B.!!$F1 2967
1 TraesCS7B01G235400 chr7D 422672459 422674511 2052 False 1551.000000 2955 95.245 275 2437 2 chr7D.!!$F7 2162
2 TraesCS7B01G235400 chr7A 510494558 510496508 1950 True 686.333333 1731 91.088 818 2666 3 chr7A.!!$R1 1848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 0.042731 CCCCACTCCTCCTCACCTTA 59.957 60.0 0.0 0.0 0.00 2.69 F
211 212 0.107643 TCCTGCATTGGTCAACGACA 59.892 50.0 0.0 0.0 33.68 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1883 2066 3.328505 CAACAATTCACCATTTCCAGCC 58.671 45.455 0.0 0.0 0.0 4.85 R
2018 2204 5.111293 CCTTTCACAAAACATGCAAGACTT 58.889 37.500 0.0 0.0 0.0 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.951347 AAAATAGAAGCATCTGGAACAATCT 57.049 32.000 0.71 0.00 38.70 2.40
26 27 6.939132 AATAGAAGCATCTGGAACAATCTG 57.061 37.500 0.71 0.00 38.70 2.90
27 28 3.618351 AGAAGCATCTGGAACAATCTGG 58.382 45.455 0.00 0.00 38.70 3.86
28 29 1.760192 AGCATCTGGAACAATCTGGC 58.240 50.000 0.00 0.00 38.70 4.85
29 30 1.005097 AGCATCTGGAACAATCTGGCA 59.995 47.619 0.00 0.00 38.70 4.92
30 31 2.029623 GCATCTGGAACAATCTGGCAT 58.970 47.619 0.00 0.00 38.70 4.40
31 32 2.223735 GCATCTGGAACAATCTGGCATG 60.224 50.000 0.00 0.00 38.70 4.06
32 33 2.133281 TCTGGAACAATCTGGCATGG 57.867 50.000 0.00 0.00 38.70 3.66
33 34 1.355381 TCTGGAACAATCTGGCATGGT 59.645 47.619 0.00 0.00 38.70 3.55
34 35 1.475280 CTGGAACAATCTGGCATGGTG 59.525 52.381 0.00 0.00 38.70 4.17
35 36 0.819582 GGAACAATCTGGCATGGTGG 59.180 55.000 0.00 0.00 0.00 4.61
36 37 0.174162 GAACAATCTGGCATGGTGGC 59.826 55.000 0.00 0.00 44.03 5.01
55 56 4.796231 GCTGTCGGCGTCGTCCAT 62.796 66.667 10.18 0.00 37.69 3.41
56 57 2.579787 CTGTCGGCGTCGTCCATC 60.580 66.667 10.18 0.00 37.69 3.51
57 58 4.124351 TGTCGGCGTCGTCCATCC 62.124 66.667 10.18 0.00 37.69 3.51
58 59 4.867599 GTCGGCGTCGTCCATCCC 62.868 72.222 10.18 0.00 37.69 3.85
61 62 3.861797 GGCGTCGTCCATCCCCAT 61.862 66.667 0.00 0.00 0.00 4.00
62 63 2.588877 GCGTCGTCCATCCCCATG 60.589 66.667 0.00 0.00 0.00 3.66
63 64 2.588877 CGTCGTCCATCCCCATGC 60.589 66.667 0.00 0.00 0.00 4.06
64 65 2.911143 GTCGTCCATCCCCATGCT 59.089 61.111 0.00 0.00 0.00 3.79
65 66 1.224592 GTCGTCCATCCCCATGCTT 59.775 57.895 0.00 0.00 0.00 3.91
66 67 0.815615 GTCGTCCATCCCCATGCTTC 60.816 60.000 0.00 0.00 0.00 3.86
67 68 1.526917 CGTCCATCCCCATGCTTCC 60.527 63.158 0.00 0.00 0.00 3.46
68 69 1.526917 GTCCATCCCCATGCTTCCG 60.527 63.158 0.00 0.00 0.00 4.30
69 70 2.908940 CCATCCCCATGCTTCCGC 60.909 66.667 0.00 0.00 0.00 5.54
70 71 2.194056 CATCCCCATGCTTCCGCT 59.806 61.111 0.00 0.00 36.97 5.52
71 72 1.451504 CATCCCCATGCTTCCGCTA 59.548 57.895 0.00 0.00 36.97 4.26
72 73 0.179020 CATCCCCATGCTTCCGCTAA 60.179 55.000 0.00 0.00 36.97 3.09
73 74 0.109342 ATCCCCATGCTTCCGCTAAG 59.891 55.000 0.00 0.00 38.32 2.18
74 75 1.224592 CCCCATGCTTCCGCTAAGT 59.775 57.895 0.00 0.00 37.53 2.24
75 76 0.815615 CCCCATGCTTCCGCTAAGTC 60.816 60.000 0.00 0.00 37.53 3.01
76 77 0.179000 CCCATGCTTCCGCTAAGTCT 59.821 55.000 0.00 0.00 37.53 3.24
77 78 1.293924 CCATGCTTCCGCTAAGTCTG 58.706 55.000 0.00 0.00 37.53 3.51
78 79 1.134699 CCATGCTTCCGCTAAGTCTGA 60.135 52.381 0.00 0.00 37.53 3.27
79 80 1.929836 CATGCTTCCGCTAAGTCTGAC 59.070 52.381 0.00 0.00 37.53 3.51
80 81 0.246635 TGCTTCCGCTAAGTCTGACC 59.753 55.000 3.76 0.00 37.53 4.02
81 82 0.246635 GCTTCCGCTAAGTCTGACCA 59.753 55.000 3.76 0.00 37.53 4.02
82 83 1.997669 CTTCCGCTAAGTCTGACCAC 58.002 55.000 3.76 0.00 0.00 4.16
83 84 0.606604 TTCCGCTAAGTCTGACCACC 59.393 55.000 3.76 0.00 0.00 4.61
84 85 0.541063 TCCGCTAAGTCTGACCACCA 60.541 55.000 3.76 0.00 0.00 4.17
85 86 0.320374 CCGCTAAGTCTGACCACCAA 59.680 55.000 3.76 0.00 0.00 3.67
86 87 1.066143 CCGCTAAGTCTGACCACCAAT 60.066 52.381 3.76 0.00 0.00 3.16
87 88 2.271800 CGCTAAGTCTGACCACCAATC 58.728 52.381 3.76 0.00 0.00 2.67
88 89 2.353704 CGCTAAGTCTGACCACCAATCA 60.354 50.000 3.76 0.00 0.00 2.57
89 90 3.003480 GCTAAGTCTGACCACCAATCAC 58.997 50.000 3.76 0.00 0.00 3.06
90 91 2.568623 AAGTCTGACCACCAATCACC 57.431 50.000 3.76 0.00 0.00 4.02
91 92 1.434188 AGTCTGACCACCAATCACCA 58.566 50.000 3.76 0.00 0.00 4.17
92 93 1.072331 AGTCTGACCACCAATCACCAC 59.928 52.381 3.76 0.00 0.00 4.16
93 94 0.400213 TCTGACCACCAATCACCACC 59.600 55.000 0.00 0.00 0.00 4.61
94 95 0.955428 CTGACCACCAATCACCACCG 60.955 60.000 0.00 0.00 0.00 4.94
95 96 2.282180 ACCACCAATCACCACCGC 60.282 61.111 0.00 0.00 0.00 5.68
96 97 3.430862 CCACCAATCACCACCGCG 61.431 66.667 0.00 0.00 0.00 6.46
97 98 4.101790 CACCAATCACCACCGCGC 62.102 66.667 0.00 0.00 0.00 6.86
112 113 3.775654 CGCCCCACTCCTCCTCAC 61.776 72.222 0.00 0.00 0.00 3.51
113 114 3.403558 GCCCCACTCCTCCTCACC 61.404 72.222 0.00 0.00 0.00 4.02
114 115 2.452114 CCCCACTCCTCCTCACCT 59.548 66.667 0.00 0.00 0.00 4.00
115 116 1.229658 CCCCACTCCTCCTCACCTT 60.230 63.158 0.00 0.00 0.00 3.50
116 117 0.042731 CCCCACTCCTCCTCACCTTA 59.957 60.000 0.00 0.00 0.00 2.69
117 118 1.344496 CCCCACTCCTCCTCACCTTAT 60.344 57.143 0.00 0.00 0.00 1.73
118 119 2.043227 CCCACTCCTCCTCACCTTATC 58.957 57.143 0.00 0.00 0.00 1.75
119 120 2.359781 CCCACTCCTCCTCACCTTATCT 60.360 54.545 0.00 0.00 0.00 1.98
120 121 2.962421 CCACTCCTCCTCACCTTATCTC 59.038 54.545 0.00 0.00 0.00 2.75
121 122 3.373658 CCACTCCTCCTCACCTTATCTCT 60.374 52.174 0.00 0.00 0.00 3.10
122 123 3.888930 CACTCCTCCTCACCTTATCTCTC 59.111 52.174 0.00 0.00 0.00 3.20
123 124 3.529734 ACTCCTCCTCACCTTATCTCTCA 59.470 47.826 0.00 0.00 0.00 3.27
124 125 4.169856 ACTCCTCCTCACCTTATCTCTCAT 59.830 45.833 0.00 0.00 0.00 2.90
125 126 4.735369 TCCTCCTCACCTTATCTCTCATC 58.265 47.826 0.00 0.00 0.00 2.92
126 127 4.418526 TCCTCCTCACCTTATCTCTCATCT 59.581 45.833 0.00 0.00 0.00 2.90
127 128 5.103301 TCCTCCTCACCTTATCTCTCATCTT 60.103 44.000 0.00 0.00 0.00 2.40
128 129 5.602145 CCTCCTCACCTTATCTCTCATCTTT 59.398 44.000 0.00 0.00 0.00 2.52
129 130 6.239289 CCTCCTCACCTTATCTCTCATCTTTC 60.239 46.154 0.00 0.00 0.00 2.62
130 131 6.439487 TCCTCACCTTATCTCTCATCTTTCT 58.561 40.000 0.00 0.00 0.00 2.52
131 132 6.549364 TCCTCACCTTATCTCTCATCTTTCTC 59.451 42.308 0.00 0.00 0.00 2.87
132 133 6.384258 TCACCTTATCTCTCATCTTTCTCG 57.616 41.667 0.00 0.00 0.00 4.04
133 134 6.122964 TCACCTTATCTCTCATCTTTCTCGA 58.877 40.000 0.00 0.00 0.00 4.04
134 135 6.262049 TCACCTTATCTCTCATCTTTCTCGAG 59.738 42.308 5.93 5.93 0.00 4.04
135 136 6.262049 CACCTTATCTCTCATCTTTCTCGAGA 59.738 42.308 12.08 12.08 35.46 4.04
136 137 7.004086 ACCTTATCTCTCATCTTTCTCGAGAT 58.996 38.462 17.44 0.00 42.34 2.75
137 138 8.160765 ACCTTATCTCTCATCTTTCTCGAGATA 58.839 37.037 17.44 10.92 40.69 1.98
138 139 9.008965 CCTTATCTCTCATCTTTCTCGAGATAA 57.991 37.037 17.44 12.15 44.75 1.75
139 140 9.825972 CTTATCTCTCATCTTTCTCGAGATAAC 57.174 37.037 17.44 0.00 43.36 1.89
140 141 7.815840 ATCTCTCATCTTTCTCGAGATAACA 57.184 36.000 17.44 0.00 39.08 2.41
141 142 7.815840 TCTCTCATCTTTCTCGAGATAACAT 57.184 36.000 17.44 3.72 35.35 2.71
142 143 8.231692 TCTCTCATCTTTCTCGAGATAACATT 57.768 34.615 17.44 0.00 35.35 2.71
143 144 8.690884 TCTCTCATCTTTCTCGAGATAACATTT 58.309 33.333 17.44 0.00 35.35 2.32
144 145 9.311916 CTCTCATCTTTCTCGAGATAACATTTT 57.688 33.333 17.44 0.00 35.35 1.82
145 146 9.658799 TCTCATCTTTCTCGAGATAACATTTTT 57.341 29.630 17.44 0.00 34.68 1.94
168 169 8.871686 TTTTCGATGAAATTCTCGAGATATCA 57.128 30.769 17.44 19.48 43.94 2.15
169 170 9.481340 TTTTCGATGAAATTCTCGAGATATCAT 57.519 29.630 25.69 25.69 43.94 2.45
170 171 9.481340 TTTCGATGAAATTCTCGAGATATCATT 57.519 29.630 25.93 17.30 43.94 2.57
172 173 9.780413 TCGATGAAATTCTCGAGATATCATTAG 57.220 33.333 25.93 22.96 38.86 1.73
173 174 9.566530 CGATGAAATTCTCGAGATATCATTAGT 57.433 33.333 25.93 13.78 37.05 2.24
184 185 9.016623 TCGAGATATCATTAGTTTTTACACACG 57.983 33.333 5.32 0.00 0.00 4.49
185 186 9.016623 CGAGATATCATTAGTTTTTACACACGA 57.983 33.333 5.32 0.00 0.00 4.35
192 193 9.701098 TCATTAGTTTTTACACACGAGATTACT 57.299 29.630 0.00 0.00 0.00 2.24
193 194 9.953825 CATTAGTTTTTACACACGAGATTACTC 57.046 33.333 0.00 0.00 39.54 2.59
194 195 8.524870 TTAGTTTTTACACACGAGATTACTCC 57.475 34.615 0.00 0.00 39.76 3.85
195 196 6.756221 AGTTTTTACACACGAGATTACTCCT 58.244 36.000 0.00 0.00 39.76 3.69
196 197 6.645415 AGTTTTTACACACGAGATTACTCCTG 59.355 38.462 0.00 0.00 39.76 3.86
197 198 2.656560 ACACACGAGATTACTCCTGC 57.343 50.000 0.00 0.00 39.76 4.85
198 199 1.893137 ACACACGAGATTACTCCTGCA 59.107 47.619 0.00 0.00 39.76 4.41
199 200 2.497675 ACACACGAGATTACTCCTGCAT 59.502 45.455 0.00 0.00 39.76 3.96
200 201 3.055819 ACACACGAGATTACTCCTGCATT 60.056 43.478 0.00 0.00 39.76 3.56
201 202 3.308053 CACACGAGATTACTCCTGCATTG 59.692 47.826 0.00 0.00 39.76 2.82
202 203 2.868583 CACGAGATTACTCCTGCATTGG 59.131 50.000 0.00 0.00 39.76 3.16
203 204 2.501723 ACGAGATTACTCCTGCATTGGT 59.498 45.455 0.00 0.00 39.76 3.67
204 205 3.126831 CGAGATTACTCCTGCATTGGTC 58.873 50.000 0.00 0.00 39.76 4.02
205 206 3.430790 CGAGATTACTCCTGCATTGGTCA 60.431 47.826 0.00 0.00 39.76 4.02
206 207 4.517285 GAGATTACTCCTGCATTGGTCAA 58.483 43.478 0.00 0.00 37.19 3.18
207 208 4.265073 AGATTACTCCTGCATTGGTCAAC 58.735 43.478 0.00 0.00 0.00 3.18
208 209 2.093306 TACTCCTGCATTGGTCAACG 57.907 50.000 0.00 0.00 0.00 4.10
209 210 0.396435 ACTCCTGCATTGGTCAACGA 59.604 50.000 0.00 0.00 0.00 3.85
210 211 0.798776 CTCCTGCATTGGTCAACGAC 59.201 55.000 0.00 0.00 0.00 4.34
211 212 0.107643 TCCTGCATTGGTCAACGACA 59.892 50.000 0.00 0.00 33.68 4.35
212 213 0.238289 CCTGCATTGGTCAACGACAC 59.762 55.000 0.00 0.00 33.68 3.67
213 214 0.238289 CTGCATTGGTCAACGACACC 59.762 55.000 0.00 0.00 33.68 4.16
214 215 0.464554 TGCATTGGTCAACGACACCA 60.465 50.000 0.00 0.00 42.48 4.17
215 216 0.238289 GCATTGGTCAACGACACCAG 59.762 55.000 0.00 0.00 44.89 4.00
216 217 0.874390 CATTGGTCAACGACACCAGG 59.126 55.000 0.00 0.00 44.89 4.45
217 218 0.472471 ATTGGTCAACGACACCAGGT 59.528 50.000 0.00 0.00 44.89 4.00
218 219 0.462937 TTGGTCAACGACACCAGGTG 60.463 55.000 18.93 18.93 44.89 4.00
250 251 4.759516 AAAACGCAACTTGATATTCCGT 57.240 36.364 0.00 0.00 0.00 4.69
251 252 3.740044 AACGCAACTTGATATTCCGTG 57.260 42.857 0.00 0.00 0.00 4.94
252 253 1.396996 ACGCAACTTGATATTCCGTGC 59.603 47.619 0.00 0.00 0.00 5.34
253 254 1.396648 CGCAACTTGATATTCCGTGCA 59.603 47.619 0.00 0.00 0.00 4.57
254 255 2.159585 CGCAACTTGATATTCCGTGCAA 60.160 45.455 0.00 0.00 0.00 4.08
255 256 3.487376 CGCAACTTGATATTCCGTGCAAT 60.487 43.478 0.00 0.00 0.00 3.56
256 257 3.792956 GCAACTTGATATTCCGTGCAATG 59.207 43.478 0.00 0.00 0.00 2.82
257 258 3.698029 ACTTGATATTCCGTGCAATGC 57.302 42.857 0.00 0.00 0.00 3.56
258 259 3.016031 ACTTGATATTCCGTGCAATGCA 58.984 40.909 2.72 2.72 35.60 3.96
320 321 3.437049 CGTCGATCTAGAGGTATGCATGA 59.563 47.826 10.16 0.00 0.00 3.07
390 391 3.070159 ACAATACATCGCAGATGCCTACT 59.930 43.478 15.41 2.55 45.12 2.57
393 394 1.202463 ACATCGCAGATGCCTACTCAC 60.202 52.381 15.41 0.00 45.12 3.51
406 407 2.907042 CCTACTCACCCCTATGAATCCC 59.093 54.545 0.00 0.00 0.00 3.85
430 431 1.545841 GGGCTAGTTCCAACCCAAAG 58.454 55.000 0.00 0.00 42.33 2.77
555 557 0.179108 GAAGTCATCGTAGGCGCCTT 60.179 55.000 37.74 19.11 38.14 4.35
566 568 0.604578 AGGCGCCTTGTAGTTAACGA 59.395 50.000 27.08 0.00 0.00 3.85
567 569 1.001181 AGGCGCCTTGTAGTTAACGAA 59.999 47.619 27.08 0.00 0.00 3.85
579 581 6.925600 TGTAGTTAACGAAAACGTCTTCTTG 58.074 36.000 0.00 0.00 34.46 3.02
582 584 3.319238 AACGAAAACGTCTTCTTGCAG 57.681 42.857 0.00 0.00 0.00 4.41
599 601 1.006086 CAGTAAACATGCATCGCCGA 58.994 50.000 0.00 0.00 0.00 5.54
604 606 2.193306 AACATGCATCGCCGAAAATC 57.807 45.000 0.00 0.00 0.00 2.17
605 607 1.382522 ACATGCATCGCCGAAAATCT 58.617 45.000 0.00 0.00 0.00 2.40
606 608 1.745087 ACATGCATCGCCGAAAATCTT 59.255 42.857 0.00 0.00 0.00 2.40
613 615 5.034152 GCATCGCCGAAAATCTTGAAATAA 58.966 37.500 0.00 0.00 0.00 1.40
617 619 7.083875 TCGCCGAAAATCTTGAAATAAATCT 57.916 32.000 0.00 0.00 0.00 2.40
663 665 5.749109 GTGAATATCACTGTCTTCCTAACCG 59.251 44.000 3.31 0.00 43.73 4.44
665 667 3.870633 ATCACTGTCTTCCTAACCGTC 57.129 47.619 0.00 0.00 0.00 4.79
666 668 2.872732 TCACTGTCTTCCTAACCGTCT 58.127 47.619 0.00 0.00 0.00 4.18
669 706 4.458295 TCACTGTCTTCCTAACCGTCTAAG 59.542 45.833 0.00 0.00 0.00 2.18
674 711 3.575256 TCTTCCTAACCGTCTAAGCACAA 59.425 43.478 0.00 0.00 0.00 3.33
683 720 5.302360 ACCGTCTAAGCACAATTTAGTTCA 58.698 37.500 0.00 0.00 31.57 3.18
753 790 6.244654 TGGAATGTAAATCACACTGATTGGA 58.755 36.000 0.00 0.00 45.57 3.53
769 806 8.857098 CACTGATTGGATAGAAAATTCATCCAT 58.143 33.333 19.05 13.13 40.80 3.41
776 813 6.887002 GGATAGAAAATTCATCCATACCTCCC 59.113 42.308 14.44 0.00 36.13 4.30
935 1097 2.631160 TGTTCGCCAAAGAAAGAGGA 57.369 45.000 0.00 0.00 0.00 3.71
936 1098 2.925724 TGTTCGCCAAAGAAAGAGGAA 58.074 42.857 0.00 0.00 0.00 3.36
969 1141 1.202545 GGTAGACTCCAGCGAATTCCC 60.203 57.143 0.00 0.00 0.00 3.97
989 1161 2.560981 CCCCACCATACTGTTTTTCCAC 59.439 50.000 0.00 0.00 0.00 4.02
1033 1209 1.379527 GAAAGAAATCGCATCCCGGT 58.620 50.000 0.00 0.00 37.59 5.28
1129 1306 1.910772 ACCTTCCTCACGCTGCTCT 60.911 57.895 0.00 0.00 0.00 4.09
1224 1401 0.818296 TCCTCTTCTACTGCTTCGCC 59.182 55.000 0.00 0.00 0.00 5.54
1227 1404 1.519455 CTTCTACTGCTTCGCCCGG 60.519 63.158 0.00 0.00 0.00 5.73
1296 1479 4.700365 CAGCAGCACGACGACGGA 62.700 66.667 12.58 0.00 44.46 4.69
1582 1765 4.434354 AGGACGAGGAGAGCGGCT 62.434 66.667 0.00 0.00 36.88 5.52
1883 2066 5.545588 TCAGACTCCTGTTCAAAATCAGAG 58.454 41.667 0.00 0.00 41.16 3.35
1909 2092 5.090139 TGGAAATGGTGAATTGTTGGGTAT 58.910 37.500 0.00 0.00 0.00 2.73
1980 2163 5.741011 TCAACTGTAGCCTGTAAATAAGGG 58.259 41.667 0.00 0.00 35.17 3.95
1981 2164 5.486063 TCAACTGTAGCCTGTAAATAAGGGA 59.514 40.000 0.00 0.00 35.17 4.20
2018 2204 6.829229 TTACTCTGAAGGTTGAGATAACGA 57.171 37.500 0.00 0.00 34.65 3.85
2076 2263 0.662619 TTCTGTTCAAACGCTGCCAG 59.337 50.000 0.00 0.00 0.00 4.85
2110 2297 7.706159 TGTTGGATAATTTACTGATGATGTGC 58.294 34.615 0.00 0.00 0.00 4.57
2192 2379 7.504911 AGAGGACTGTACTTTTGTCTGTTACTA 59.495 37.037 0.00 0.00 0.00 1.82
2229 2416 9.227777 GATAAGGAATTAGTCTCTCTCTCCTAC 57.772 40.741 0.00 0.00 32.81 3.18
2230 2417 6.841781 AGGAATTAGTCTCTCTCTCCTACT 57.158 41.667 0.00 0.00 31.95 2.57
2231 2418 6.838382 AGGAATTAGTCTCTCTCTCCTACTC 58.162 44.000 0.00 0.00 31.95 2.59
2232 2419 6.002082 GGAATTAGTCTCTCTCTCCTACTCC 58.998 48.000 0.00 0.00 0.00 3.85
2233 2420 5.578157 ATTAGTCTCTCTCTCCTACTCCC 57.422 47.826 0.00 0.00 0.00 4.30
2234 2421 3.145559 AGTCTCTCTCTCCTACTCCCT 57.854 52.381 0.00 0.00 0.00 4.20
2235 2422 3.046374 AGTCTCTCTCTCCTACTCCCTC 58.954 54.545 0.00 0.00 0.00 4.30
2236 2423 2.105993 GTCTCTCTCTCCTACTCCCTCC 59.894 59.091 0.00 0.00 0.00 4.30
2237 2424 1.071699 CTCTCTCTCCTACTCCCTCCG 59.928 61.905 0.00 0.00 0.00 4.63
2238 2425 0.841289 CTCTCTCCTACTCCCTCCGT 59.159 60.000 0.00 0.00 0.00 4.69
2239 2426 0.838608 TCTCTCCTACTCCCTCCGTC 59.161 60.000 0.00 0.00 0.00 4.79
2240 2427 0.841289 CTCTCCTACTCCCTCCGTCT 59.159 60.000 0.00 0.00 0.00 4.18
2241 2428 0.838608 TCTCCTACTCCCTCCGTCTC 59.161 60.000 0.00 0.00 0.00 3.36
2242 2429 0.547075 CTCCTACTCCCTCCGTCTCA 59.453 60.000 0.00 0.00 0.00 3.27
2243 2430 0.997363 TCCTACTCCCTCCGTCTCAA 59.003 55.000 0.00 0.00 0.00 3.02
2244 2431 1.356738 TCCTACTCCCTCCGTCTCAAA 59.643 52.381 0.00 0.00 0.00 2.69
2245 2432 2.176889 CCTACTCCCTCCGTCTCAAAA 58.823 52.381 0.00 0.00 0.00 2.44
2246 2433 2.766828 CCTACTCCCTCCGTCTCAAAAT 59.233 50.000 0.00 0.00 0.00 1.82
2247 2434 3.958798 CCTACTCCCTCCGTCTCAAAATA 59.041 47.826 0.00 0.00 0.00 1.40
2248 2435 3.889520 ACTCCCTCCGTCTCAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
2249 2436 3.442076 ACTCCCTCCGTCTCAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
2250 2437 3.838903 ACTCCCTCCGTCTCAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
2251 2438 4.184629 CTCCCTCCGTCTCAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2252 2439 3.581332 TCCCTCCGTCTCAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2253 2440 3.933332 CCCTCCGTCTCAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2254 2441 4.562757 CCCTCCGTCTCAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
2255 2442 5.178797 CCTCCGTCTCAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
2256 2443 5.292101 CCTCCGTCTCAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
2257 2444 5.789521 TCCGTCTCAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
2258 2445 6.227522 TCCGTCTCAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
2259 2446 6.708502 TCCGTCTCAAAATACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
2260 2447 7.227711 TCCGTCTCAAAATACTTGTCATCAAAA 59.772 33.333 0.00 0.00 32.87 2.44
2261 2448 8.023128 CCGTCTCAAAATACTTGTCATCAAAAT 58.977 33.333 0.00 0.00 32.87 1.82
2262 2449 8.843733 CGTCTCAAAATACTTGTCATCAAAATG 58.156 33.333 0.00 0.00 32.87 2.32
2263 2450 9.897744 GTCTCAAAATACTTGTCATCAAAATGA 57.102 29.630 0.00 0.00 39.63 2.57
2304 2491 9.301897 TCTAGATGTATTTTAGCTCTAGATGCA 57.698 33.333 14.12 0.00 39.45 3.96
2318 2505 8.600668 AGCTCTAGATGCATATCTTTTTATCCA 58.399 33.333 0.00 0.00 40.79 3.41
2319 2506 9.393512 GCTCTAGATGCATATCTTTTTATCCAT 57.606 33.333 0.00 0.00 40.79 3.41
2340 2527 9.801873 ATCCATTTTGATAACAAGTATTTTCGG 57.198 29.630 0.00 0.00 37.32 4.30
2341 2528 9.015367 TCCATTTTGATAACAAGTATTTTCGGA 57.985 29.630 0.00 0.00 37.32 4.55
2342 2529 9.072294 CCATTTTGATAACAAGTATTTTCGGAC 57.928 33.333 0.00 0.00 37.32 4.79
2343 2530 8.785101 CATTTTGATAACAAGTATTTTCGGACG 58.215 33.333 0.00 0.00 37.32 4.79
2344 2531 7.655236 TTTGATAACAAGTATTTTCGGACGA 57.345 32.000 0.00 0.00 37.32 4.20
2345 2532 7.655236 TTGATAACAAGTATTTTCGGACGAA 57.345 32.000 2.62 2.62 0.00 3.85
2346 2533 7.285783 TGATAACAAGTATTTTCGGACGAAG 57.714 36.000 7.25 0.00 35.38 3.79
2347 2534 4.400036 AACAAGTATTTTCGGACGAAGC 57.600 40.909 7.25 0.89 35.38 3.86
2348 2535 2.410730 ACAAGTATTTTCGGACGAAGCG 59.589 45.455 7.25 0.00 35.38 4.68
2349 2536 2.642139 AGTATTTTCGGACGAAGCGA 57.358 45.000 7.25 0.00 35.38 4.93
2363 2550 4.103357 ACGAAGCGAGTACATGTTATGAC 58.897 43.478 2.30 0.00 0.00 3.06
2410 2600 2.680439 ACTAAATCCCCCTTCCCTCA 57.320 50.000 0.00 0.00 0.00 3.86
2443 2633 4.035102 GGGCCTTTCAGCTCCGGT 62.035 66.667 0.84 0.00 0.00 5.28
2453 2643 0.179150 CAGCTCCGGTCTTCTTCGAG 60.179 60.000 0.00 0.00 0.00 4.04
2520 2842 3.649843 TCCGTAATAGGACATCCCAACT 58.350 45.455 0.00 0.00 34.92 3.16
2553 2875 5.616270 TGCCAAAATCCTCCTTTTAAAACC 58.384 37.500 0.00 0.00 0.00 3.27
2554 2876 5.001232 GCCAAAATCCTCCTTTTAAAACCC 58.999 41.667 0.00 0.00 0.00 4.11
2558 2882 8.094548 CCAAAATCCTCCTTTTAAAACCCTAAG 58.905 37.037 0.00 0.00 0.00 2.18
2571 2895 0.037605 CCCTAAGCTCAAACCGTCGT 60.038 55.000 0.00 0.00 0.00 4.34
2583 2907 1.443872 CCGTCGTGTCCCTTTCTCG 60.444 63.158 0.00 0.00 0.00 4.04
2585 2909 1.737008 GTCGTGTCCCTTTCTCGCC 60.737 63.158 0.00 0.00 0.00 5.54
2586 2910 2.204461 TCGTGTCCCTTTCTCGCCA 61.204 57.895 0.00 0.00 0.00 5.69
2593 2917 2.176273 CCTTTCTCGCCATCGCTGG 61.176 63.158 0.00 0.00 46.17 4.85
2594 2918 1.448540 CTTTCTCGCCATCGCTGGT 60.449 57.895 7.21 0.00 45.10 4.00
2606 2930 0.181587 TCGCTGGTGGAAAGTGGAAA 59.818 50.000 0.00 0.00 0.00 3.13
2613 2937 3.146847 GGTGGAAAGTGGAAACTACCAG 58.853 50.000 0.00 0.00 40.85 4.00
2618 2942 2.841442 AGTGGAAACTACCAGCTGAC 57.159 50.000 17.39 1.28 40.85 3.51
2637 2961 4.101448 GCTGGTGGCGATGGAGGT 62.101 66.667 0.00 0.00 0.00 3.85
2638 2962 2.124983 CTGGTGGCGATGGAGGTG 60.125 66.667 0.00 0.00 0.00 4.00
2639 2963 3.687321 CTGGTGGCGATGGAGGTGG 62.687 68.421 0.00 0.00 0.00 4.61
2640 2964 3.399181 GGTGGCGATGGAGGTGGA 61.399 66.667 0.00 0.00 0.00 4.02
2641 2965 2.187946 GTGGCGATGGAGGTGGAG 59.812 66.667 0.00 0.00 0.00 3.86
2642 2966 3.785859 TGGCGATGGAGGTGGAGC 61.786 66.667 0.00 0.00 0.00 4.70
2643 2967 4.554036 GGCGATGGAGGTGGAGCC 62.554 72.222 0.00 0.00 37.61 4.70
2658 2982 1.688884 AGCCTCTCAGCTCCTTCCC 60.689 63.158 0.00 0.00 39.48 3.97
2666 2990 4.684724 TCTCAGCTCCTTCCCTTAACTAA 58.315 43.478 0.00 0.00 0.00 2.24
2667 2991 4.712337 TCTCAGCTCCTTCCCTTAACTAAG 59.288 45.833 0.00 0.00 0.00 2.18
2668 2992 3.197983 TCAGCTCCTTCCCTTAACTAAGC 59.802 47.826 0.00 0.00 32.02 3.09
2669 2993 3.198853 CAGCTCCTTCCCTTAACTAAGCT 59.801 47.826 0.00 0.00 39.31 3.74
2670 2994 3.198853 AGCTCCTTCCCTTAACTAAGCTG 59.801 47.826 0.00 0.00 37.45 4.24
2671 2995 3.682999 GCTCCTTCCCTTAACTAAGCTGG 60.683 52.174 0.00 0.00 32.02 4.85
2672 2996 2.844348 TCCTTCCCTTAACTAAGCTGGG 59.156 50.000 0.00 0.00 39.22 4.45
2673 2997 2.844348 CCTTCCCTTAACTAAGCTGGGA 59.156 50.000 1.63 1.63 44.39 4.37
2674 2998 3.370633 CCTTCCCTTAACTAAGCTGGGAC 60.371 52.174 5.25 0.00 45.58 4.46
2675 2999 1.829222 TCCCTTAACTAAGCTGGGACG 59.171 52.381 1.63 0.00 41.57 4.79
2676 3000 1.553704 CCCTTAACTAAGCTGGGACGT 59.446 52.381 0.00 0.00 40.23 4.34
2677 3001 2.618053 CCTTAACTAAGCTGGGACGTG 58.382 52.381 0.00 0.00 32.02 4.49
2678 3002 2.000447 CTTAACTAAGCTGGGACGTGC 59.000 52.381 0.00 0.00 0.00 5.34
2679 3003 0.970640 TAACTAAGCTGGGACGTGCA 59.029 50.000 9.96 0.00 33.13 4.57
2680 3004 0.107831 AACTAAGCTGGGACGTGCAA 59.892 50.000 9.96 0.00 33.13 4.08
2681 3005 0.602905 ACTAAGCTGGGACGTGCAAC 60.603 55.000 9.96 0.00 33.13 4.17
2693 3017 2.612200 GTGCAACGCAGGTCTAACA 58.388 52.632 0.00 0.00 40.08 2.41
2694 3018 0.941542 GTGCAACGCAGGTCTAACAA 59.058 50.000 0.00 0.00 40.08 2.83
2695 3019 1.332375 GTGCAACGCAGGTCTAACAAA 59.668 47.619 0.00 0.00 40.08 2.83
2696 3020 1.601903 TGCAACGCAGGTCTAACAAAG 59.398 47.619 0.00 0.00 33.32 2.77
2697 3021 1.602377 GCAACGCAGGTCTAACAAAGT 59.398 47.619 0.00 0.00 0.00 2.66
2698 3022 2.803956 GCAACGCAGGTCTAACAAAGTA 59.196 45.455 0.00 0.00 0.00 2.24
2699 3023 3.249080 GCAACGCAGGTCTAACAAAGTAA 59.751 43.478 0.00 0.00 0.00 2.24
2700 3024 4.260866 GCAACGCAGGTCTAACAAAGTAAA 60.261 41.667 0.00 0.00 0.00 2.01
2701 3025 5.731126 GCAACGCAGGTCTAACAAAGTAAAA 60.731 40.000 0.00 0.00 0.00 1.52
2702 3026 6.259638 CAACGCAGGTCTAACAAAGTAAAAA 58.740 36.000 0.00 0.00 0.00 1.94
2783 3107 8.579850 TTAATTTCCAGATGCAAGACATAAGT 57.420 30.769 0.00 0.00 39.84 2.24
2784 3108 9.679661 TTAATTTCCAGATGCAAGACATAAGTA 57.320 29.630 0.00 0.00 39.84 2.24
2785 3109 8.579850 AATTTCCAGATGCAAGACATAAGTAA 57.420 30.769 0.00 0.00 39.84 2.24
2786 3110 7.994425 TTTCCAGATGCAAGACATAAGTAAA 57.006 32.000 0.00 0.00 39.84 2.01
2787 3111 8.579850 TTTCCAGATGCAAGACATAAGTAAAT 57.420 30.769 0.00 0.00 39.84 1.40
2788 3112 9.679661 TTTCCAGATGCAAGACATAAGTAAATA 57.320 29.630 0.00 0.00 39.84 1.40
2789 3113 9.679661 TTCCAGATGCAAGACATAAGTAAATAA 57.320 29.630 0.00 0.00 39.84 1.40
2790 3114 9.851686 TCCAGATGCAAGACATAAGTAAATAAT 57.148 29.630 0.00 0.00 39.84 1.28
2793 3117 9.956720 AGATGCAAGACATAAGTAAATAATTGC 57.043 29.630 0.00 0.00 39.84 3.56
2796 3120 7.701924 TGCAAGACATAAGTAAATAATTGCAGC 59.298 33.333 4.79 0.00 43.79 5.25
2797 3121 7.096885 GCAAGACATAAGTAAATAATTGCAGCG 60.097 37.037 0.00 0.00 40.07 5.18
2798 3122 7.786178 AGACATAAGTAAATAATTGCAGCGA 57.214 32.000 0.00 0.00 0.00 4.93
2799 3123 8.208718 AGACATAAGTAAATAATTGCAGCGAA 57.791 30.769 0.00 0.00 0.00 4.70
2800 3124 8.673711 AGACATAAGTAAATAATTGCAGCGAAA 58.326 29.630 0.00 0.00 0.00 3.46
2801 3125 9.284594 GACATAAGTAAATAATTGCAGCGAAAA 57.715 29.630 0.00 0.00 0.00 2.29
2802 3126 9.801873 ACATAAGTAAATAATTGCAGCGAAAAT 57.198 25.926 0.00 0.00 0.00 1.82
2812 3136 7.740519 AATTGCAGCGAAAATAATTACTCAC 57.259 32.000 0.00 0.00 0.00 3.51
2813 3137 5.229921 TGCAGCGAAAATAATTACTCACC 57.770 39.130 0.00 0.00 0.00 4.02
2814 3138 4.095782 TGCAGCGAAAATAATTACTCACCC 59.904 41.667 0.00 0.00 0.00 4.61
2815 3139 4.335594 GCAGCGAAAATAATTACTCACCCT 59.664 41.667 0.00 0.00 0.00 4.34
2816 3140 5.526111 GCAGCGAAAATAATTACTCACCCTA 59.474 40.000 0.00 0.00 0.00 3.53
2817 3141 6.292919 GCAGCGAAAATAATTACTCACCCTAG 60.293 42.308 0.00 0.00 0.00 3.02
2818 3142 6.761714 CAGCGAAAATAATTACTCACCCTAGT 59.238 38.462 0.00 0.00 0.00 2.57
2819 3143 7.924412 CAGCGAAAATAATTACTCACCCTAGTA 59.076 37.037 0.00 0.00 0.00 1.82
2820 3144 7.924947 AGCGAAAATAATTACTCACCCTAGTAC 59.075 37.037 0.00 0.00 31.73 2.73
2821 3145 7.924947 GCGAAAATAATTACTCACCCTAGTACT 59.075 37.037 0.00 0.00 31.73 2.73
2936 3260 5.664294 TTGGTCAAATTGATGATCAAGGG 57.336 39.130 13.79 5.72 43.59 3.95
2937 3261 4.025360 TGGTCAAATTGATGATCAAGGGG 58.975 43.478 13.79 5.39 40.05 4.79
2938 3262 4.026052 GGTCAAATTGATGATCAAGGGGT 58.974 43.478 13.79 0.00 40.05 4.95
2939 3263 5.200483 GGTCAAATTGATGATCAAGGGGTA 58.800 41.667 13.79 0.00 40.05 3.69
2940 3264 5.067805 GGTCAAATTGATGATCAAGGGGTAC 59.932 44.000 13.79 7.70 40.05 3.34
2941 3265 4.881273 TCAAATTGATGATCAAGGGGTACG 59.119 41.667 13.79 0.00 40.05 3.67
2942 3266 2.325583 TTGATGATCAAGGGGTACGC 57.674 50.000 3.29 0.29 43.76 4.42
2957 3281 2.468532 CGCGCACGTCCTGTAAAC 59.531 61.111 8.75 0.00 33.53 2.01
2958 3282 2.019951 CGCGCACGTCCTGTAAACT 61.020 57.895 8.75 0.00 33.53 2.66
2959 3283 1.491563 GCGCACGTCCTGTAAACTG 59.508 57.895 0.30 0.00 0.00 3.16
2960 3284 1.897398 GCGCACGTCCTGTAAACTGG 61.897 60.000 0.30 0.00 36.43 4.00
2961 3285 1.289109 CGCACGTCCTGTAAACTGGG 61.289 60.000 6.23 0.00 35.87 4.45
2962 3286 0.034337 GCACGTCCTGTAAACTGGGA 59.966 55.000 6.23 0.00 35.87 4.37
2963 3287 1.939838 GCACGTCCTGTAAACTGGGAG 60.940 57.143 6.23 3.90 35.87 4.30
2964 3288 0.320697 ACGTCCTGTAAACTGGGAGC 59.679 55.000 6.23 0.00 35.87 4.70
2965 3289 0.736325 CGTCCTGTAAACTGGGAGCG 60.736 60.000 6.23 5.54 35.87 5.03
2966 3290 0.606604 GTCCTGTAAACTGGGAGCGA 59.393 55.000 6.23 0.00 35.87 4.93
2967 3291 0.895530 TCCTGTAAACTGGGAGCGAG 59.104 55.000 6.23 0.00 35.87 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.248945 CAGATTGTTCCAGATGCTTCTATTTTT 58.751 33.333 1.16 0.00 0.00 1.94
1 2 7.147949 CCAGATTGTTCCAGATGCTTCTATTTT 60.148 37.037 1.16 0.00 0.00 1.82
2 3 6.320672 CCAGATTGTTCCAGATGCTTCTATTT 59.679 38.462 1.16 0.00 0.00 1.40
3 4 5.826737 CCAGATTGTTCCAGATGCTTCTATT 59.173 40.000 1.16 0.00 0.00 1.73
4 5 5.374921 CCAGATTGTTCCAGATGCTTCTAT 58.625 41.667 1.16 0.00 0.00 1.98
5 6 4.774124 CCAGATTGTTCCAGATGCTTCTA 58.226 43.478 1.16 0.00 0.00 2.10
6 7 3.618351 CCAGATTGTTCCAGATGCTTCT 58.382 45.455 0.00 0.00 0.00 2.85
7 8 2.098770 GCCAGATTGTTCCAGATGCTTC 59.901 50.000 0.00 0.00 0.00 3.86
8 9 2.097825 GCCAGATTGTTCCAGATGCTT 58.902 47.619 0.00 0.00 0.00 3.91
9 10 1.005097 TGCCAGATTGTTCCAGATGCT 59.995 47.619 0.00 0.00 0.00 3.79
10 11 1.466856 TGCCAGATTGTTCCAGATGC 58.533 50.000 0.00 0.00 0.00 3.91
11 12 2.361119 CCATGCCAGATTGTTCCAGATG 59.639 50.000 0.00 0.00 0.00 2.90
12 13 2.024655 ACCATGCCAGATTGTTCCAGAT 60.025 45.455 0.00 0.00 0.00 2.90
13 14 1.355381 ACCATGCCAGATTGTTCCAGA 59.645 47.619 0.00 0.00 0.00 3.86
14 15 1.475280 CACCATGCCAGATTGTTCCAG 59.525 52.381 0.00 0.00 0.00 3.86
15 16 1.548081 CACCATGCCAGATTGTTCCA 58.452 50.000 0.00 0.00 0.00 3.53
16 17 0.819582 CCACCATGCCAGATTGTTCC 59.180 55.000 0.00 0.00 0.00 3.62
17 18 0.174162 GCCACCATGCCAGATTGTTC 59.826 55.000 0.00 0.00 0.00 3.18
18 19 2.279842 GCCACCATGCCAGATTGTT 58.720 52.632 0.00 0.00 0.00 2.83
19 20 4.023137 GCCACCATGCCAGATTGT 57.977 55.556 0.00 0.00 0.00 2.71
38 39 4.796231 ATGGACGACGCCGACAGC 62.796 66.667 0.00 0.00 39.50 4.40
39 40 2.579787 GATGGACGACGCCGACAG 60.580 66.667 0.00 0.00 39.50 3.51
40 41 4.124351 GGATGGACGACGCCGACA 62.124 66.667 0.00 0.00 39.50 4.35
41 42 4.867599 GGGATGGACGACGCCGAC 62.868 72.222 0.00 0.00 39.50 4.79
44 45 3.861797 ATGGGGATGGACGACGCC 61.862 66.667 0.00 0.00 39.15 5.68
45 46 2.588877 CATGGGGATGGACGACGC 60.589 66.667 0.00 0.00 0.00 5.19
46 47 2.588877 GCATGGGGATGGACGACG 60.589 66.667 0.00 0.00 0.00 5.12
47 48 0.815615 GAAGCATGGGGATGGACGAC 60.816 60.000 0.00 0.00 0.00 4.34
48 49 1.526887 GAAGCATGGGGATGGACGA 59.473 57.895 0.00 0.00 0.00 4.20
49 50 1.526917 GGAAGCATGGGGATGGACG 60.527 63.158 0.00 0.00 0.00 4.79
50 51 1.526917 CGGAAGCATGGGGATGGAC 60.527 63.158 0.00 0.00 0.00 4.02
51 52 2.918248 CGGAAGCATGGGGATGGA 59.082 61.111 0.00 0.00 0.00 3.41
63 64 1.404315 GGTGGTCAGACTTAGCGGAAG 60.404 57.143 0.00 0.35 41.37 3.46
64 65 0.606604 GGTGGTCAGACTTAGCGGAA 59.393 55.000 0.00 0.00 0.00 4.30
65 66 0.541063 TGGTGGTCAGACTTAGCGGA 60.541 55.000 0.00 0.00 0.00 5.54
66 67 0.320374 TTGGTGGTCAGACTTAGCGG 59.680 55.000 0.00 0.00 0.00 5.52
67 68 2.271800 GATTGGTGGTCAGACTTAGCG 58.728 52.381 0.00 0.00 0.00 4.26
68 69 3.003480 GTGATTGGTGGTCAGACTTAGC 58.997 50.000 0.00 0.89 0.00 3.09
69 70 3.007940 TGGTGATTGGTGGTCAGACTTAG 59.992 47.826 0.00 0.00 0.00 2.18
70 71 2.976185 TGGTGATTGGTGGTCAGACTTA 59.024 45.455 0.00 0.00 0.00 2.24
71 72 1.774254 TGGTGATTGGTGGTCAGACTT 59.226 47.619 0.00 0.00 0.00 3.01
72 73 1.072331 GTGGTGATTGGTGGTCAGACT 59.928 52.381 0.00 0.00 0.00 3.24
73 74 1.523758 GTGGTGATTGGTGGTCAGAC 58.476 55.000 0.00 0.00 0.00 3.51
74 75 0.400213 GGTGGTGATTGGTGGTCAGA 59.600 55.000 0.00 0.00 0.00 3.27
75 76 0.955428 CGGTGGTGATTGGTGGTCAG 60.955 60.000 0.00 0.00 0.00 3.51
76 77 1.072332 CGGTGGTGATTGGTGGTCA 59.928 57.895 0.00 0.00 0.00 4.02
77 78 2.332654 GCGGTGGTGATTGGTGGTC 61.333 63.158 0.00 0.00 0.00 4.02
78 79 2.282180 GCGGTGGTGATTGGTGGT 60.282 61.111 0.00 0.00 0.00 4.16
79 80 3.430862 CGCGGTGGTGATTGGTGG 61.431 66.667 0.00 0.00 0.00 4.61
80 81 4.101790 GCGCGGTGGTGATTGGTG 62.102 66.667 8.83 0.00 0.00 4.17
95 96 3.775654 GTGAGGAGGAGTGGGGCG 61.776 72.222 0.00 0.00 0.00 6.13
96 97 3.403558 GGTGAGGAGGAGTGGGGC 61.404 72.222 0.00 0.00 0.00 5.80
97 98 0.042731 TAAGGTGAGGAGGAGTGGGG 59.957 60.000 0.00 0.00 0.00 4.96
98 99 2.043227 GATAAGGTGAGGAGGAGTGGG 58.957 57.143 0.00 0.00 0.00 4.61
99 100 2.962421 GAGATAAGGTGAGGAGGAGTGG 59.038 54.545 0.00 0.00 0.00 4.00
100 101 3.888930 GAGAGATAAGGTGAGGAGGAGTG 59.111 52.174 0.00 0.00 0.00 3.51
101 102 3.529734 TGAGAGATAAGGTGAGGAGGAGT 59.470 47.826 0.00 0.00 0.00 3.85
102 103 4.177537 TGAGAGATAAGGTGAGGAGGAG 57.822 50.000 0.00 0.00 0.00 3.69
103 104 4.418526 AGATGAGAGATAAGGTGAGGAGGA 59.581 45.833 0.00 0.00 0.00 3.71
104 105 4.739793 AGATGAGAGATAAGGTGAGGAGG 58.260 47.826 0.00 0.00 0.00 4.30
105 106 6.550854 AGAAAGATGAGAGATAAGGTGAGGAG 59.449 42.308 0.00 0.00 0.00 3.69
106 107 6.439487 AGAAAGATGAGAGATAAGGTGAGGA 58.561 40.000 0.00 0.00 0.00 3.71
107 108 6.514870 CGAGAAAGATGAGAGATAAGGTGAGG 60.515 46.154 0.00 0.00 0.00 3.86
108 109 6.262049 TCGAGAAAGATGAGAGATAAGGTGAG 59.738 42.308 0.00 0.00 0.00 3.51
109 110 6.122964 TCGAGAAAGATGAGAGATAAGGTGA 58.877 40.000 0.00 0.00 0.00 4.02
110 111 6.262049 TCTCGAGAAAGATGAGAGATAAGGTG 59.738 42.308 14.01 0.00 34.00 4.00
111 112 6.361433 TCTCGAGAAAGATGAGAGATAAGGT 58.639 40.000 14.01 0.00 34.00 3.50
112 113 6.875948 TCTCGAGAAAGATGAGAGATAAGG 57.124 41.667 14.01 0.00 34.00 2.69
115 116 8.910351 TGTTATCTCGAGAAAGATGAGAGATA 57.090 34.615 20.91 8.79 44.12 1.98
116 117 7.815840 TGTTATCTCGAGAAAGATGAGAGAT 57.184 36.000 20.91 10.51 46.55 2.75
117 118 7.815840 ATGTTATCTCGAGAAAGATGAGAGA 57.184 36.000 20.91 0.00 41.65 3.10
118 119 8.870160 AAATGTTATCTCGAGAAAGATGAGAG 57.130 34.615 20.91 0.00 41.65 3.20
119 120 9.658799 AAAAATGTTATCTCGAGAAAGATGAGA 57.341 29.630 20.91 0.00 42.47 3.27
142 143 9.313118 TGATATCTCGAGAATTTCATCGAAAAA 57.687 29.630 20.91 0.00 46.34 1.94
143 144 8.871686 TGATATCTCGAGAATTTCATCGAAAA 57.128 30.769 20.91 10.91 46.34 2.29
144 145 9.481340 AATGATATCTCGAGAATTTCATCGAAA 57.519 29.630 25.62 8.58 46.34 3.46
146 147 9.780413 CTAATGATATCTCGAGAATTTCATCGA 57.220 33.333 25.62 19.16 45.06 3.59
147 148 9.566530 ACTAATGATATCTCGAGAATTTCATCG 57.433 33.333 25.62 22.22 40.26 3.84
158 159 9.016623 CGTGTGTAAAAACTAATGATATCTCGA 57.983 33.333 3.98 0.00 0.00 4.04
159 160 9.016623 TCGTGTGTAAAAACTAATGATATCTCG 57.983 33.333 3.98 0.00 0.00 4.04
166 167 9.701098 AGTAATCTCGTGTGTAAAAACTAATGA 57.299 29.630 0.00 0.00 0.00 2.57
167 168 9.953825 GAGTAATCTCGTGTGTAAAAACTAATG 57.046 33.333 0.00 0.00 0.00 1.90
168 169 9.148104 GGAGTAATCTCGTGTGTAAAAACTAAT 57.852 33.333 0.00 0.00 41.26 1.73
169 170 8.362639 AGGAGTAATCTCGTGTGTAAAAACTAA 58.637 33.333 0.00 0.00 41.26 2.24
170 171 7.811236 CAGGAGTAATCTCGTGTGTAAAAACTA 59.189 37.037 8.99 0.00 45.69 2.24
171 172 6.645415 CAGGAGTAATCTCGTGTGTAAAAACT 59.355 38.462 8.99 0.00 45.69 2.66
172 173 6.818416 CAGGAGTAATCTCGTGTGTAAAAAC 58.182 40.000 8.99 0.00 45.69 2.43
182 183 2.501723 ACCAATGCAGGAGTAATCTCGT 59.498 45.455 0.00 0.00 41.26 4.18
183 184 3.126831 GACCAATGCAGGAGTAATCTCG 58.873 50.000 0.00 0.00 41.26 4.04
184 185 4.142609 TGACCAATGCAGGAGTAATCTC 57.857 45.455 0.00 0.00 39.76 2.75
185 186 4.265073 GTTGACCAATGCAGGAGTAATCT 58.735 43.478 0.00 0.00 0.00 2.40
186 187 3.063997 CGTTGACCAATGCAGGAGTAATC 59.936 47.826 0.00 0.00 0.00 1.75
187 188 3.009723 CGTTGACCAATGCAGGAGTAAT 58.990 45.455 0.00 0.00 0.00 1.89
188 189 2.037902 TCGTTGACCAATGCAGGAGTAA 59.962 45.455 0.00 0.00 0.00 2.24
189 190 1.621317 TCGTTGACCAATGCAGGAGTA 59.379 47.619 0.00 0.00 0.00 2.59
190 191 0.396435 TCGTTGACCAATGCAGGAGT 59.604 50.000 0.00 0.00 0.00 3.85
191 192 0.798776 GTCGTTGACCAATGCAGGAG 59.201 55.000 0.00 0.00 0.00 3.69
192 193 0.107643 TGTCGTTGACCAATGCAGGA 59.892 50.000 0.00 0.00 0.00 3.86
193 194 0.238289 GTGTCGTTGACCAATGCAGG 59.762 55.000 0.00 0.00 0.00 4.85
194 195 0.238289 GGTGTCGTTGACCAATGCAG 59.762 55.000 0.00 0.00 33.25 4.41
195 196 0.464554 TGGTGTCGTTGACCAATGCA 60.465 50.000 0.00 0.00 40.65 3.96
196 197 0.238289 CTGGTGTCGTTGACCAATGC 59.762 55.000 0.00 0.00 43.02 3.56
197 198 0.874390 CCTGGTGTCGTTGACCAATG 59.126 55.000 0.00 0.00 43.02 2.82
198 199 0.472471 ACCTGGTGTCGTTGACCAAT 59.528 50.000 0.00 0.00 43.02 3.16
199 200 0.462937 CACCTGGTGTCGTTGACCAA 60.463 55.000 18.76 0.00 43.02 3.67
200 201 1.145156 CACCTGGTGTCGTTGACCA 59.855 57.895 18.76 0.00 41.37 4.02
201 202 0.463116 AACACCTGGTGTCGTTGACC 60.463 55.000 31.03 0.00 46.79 4.02
202 203 1.375551 AAACACCTGGTGTCGTTGAC 58.624 50.000 31.03 0.00 46.79 3.18
203 204 1.740585 CAAAACACCTGGTGTCGTTGA 59.259 47.619 32.43 0.00 46.79 3.18
204 205 1.470890 ACAAAACACCTGGTGTCGTTG 59.529 47.619 33.21 33.21 46.79 4.10
205 206 1.828979 ACAAAACACCTGGTGTCGTT 58.171 45.000 31.03 23.79 46.79 3.85
206 207 2.695127 TACAAAACACCTGGTGTCGT 57.305 45.000 31.03 26.90 46.79 4.34
207 208 4.358494 TTTTACAAAACACCTGGTGTCG 57.642 40.909 31.03 23.28 46.79 4.35
233 234 1.396648 TGCACGGAATATCAAGTTGCG 59.603 47.619 0.00 0.00 44.41 4.85
234 235 3.485947 TTGCACGGAATATCAAGTTGC 57.514 42.857 0.00 0.00 0.00 4.17
235 236 3.792956 GCATTGCACGGAATATCAAGTTG 59.207 43.478 3.15 0.00 0.00 3.16
236 237 3.443329 TGCATTGCACGGAATATCAAGTT 59.557 39.130 7.38 0.00 31.71 2.66
237 238 3.016031 TGCATTGCACGGAATATCAAGT 58.984 40.909 7.38 0.00 31.71 3.16
238 239 3.696281 TGCATTGCACGGAATATCAAG 57.304 42.857 7.38 0.00 31.71 3.02
256 257 2.315925 TACTAGCAAGATGCCTGTGC 57.684 50.000 0.00 0.00 46.52 4.57
257 258 3.866651 AGTTACTAGCAAGATGCCTGTG 58.133 45.455 0.00 0.00 46.52 3.66
258 259 4.256920 CAAGTTACTAGCAAGATGCCTGT 58.743 43.478 0.00 1.37 46.52 4.00
259 260 4.256920 ACAAGTTACTAGCAAGATGCCTG 58.743 43.478 0.00 0.00 46.52 4.85
260 261 4.559862 ACAAGTTACTAGCAAGATGCCT 57.440 40.909 0.00 0.00 46.52 4.75
261 262 6.049149 TCATACAAGTTACTAGCAAGATGCC 58.951 40.000 0.00 0.00 46.52 4.40
262 263 7.721286 ATCATACAAGTTACTAGCAAGATGC 57.279 36.000 0.00 0.00 45.46 3.91
390 391 3.916349 CCATAAGGGATTCATAGGGGTGA 59.084 47.826 0.00 0.00 40.01 4.02
406 407 2.241176 TGGGTTGGAACTAGCCCATAAG 59.759 50.000 8.50 0.00 45.40 1.73
430 431 8.847444 AGATATGACAATTTTCTTGCGAATTC 57.153 30.769 0.00 0.00 0.00 2.17
519 521 8.606602 CGATGACTTCATAAATCTCAACATGAA 58.393 33.333 0.00 0.00 36.57 2.57
529 531 4.143305 GCGCCTACGATGACTTCATAAATC 60.143 45.833 0.00 0.00 43.93 2.17
566 568 5.554822 TGTTTACTGCAAGAAGACGTTTT 57.445 34.783 0.00 0.00 37.43 2.43
567 569 5.510671 CATGTTTACTGCAAGAAGACGTTT 58.489 37.500 0.00 0.00 37.43 3.60
579 581 0.589729 CGGCGATGCATGTTTACTGC 60.590 55.000 2.46 0.00 40.10 4.40
582 584 2.535934 TTTCGGCGATGCATGTTTAC 57.464 45.000 11.76 0.00 0.00 2.01
646 648 2.872732 AGACGGTTAGGAAGACAGTGA 58.127 47.619 0.00 0.00 0.00 3.41
654 656 4.546829 ATTGTGCTTAGACGGTTAGGAA 57.453 40.909 0.00 0.00 0.00 3.36
663 665 5.080068 GCGTGAACTAAATTGTGCTTAGAC 58.920 41.667 0.00 0.00 31.91 2.59
665 667 5.283060 AGCGTGAACTAAATTGTGCTTAG 57.717 39.130 0.00 0.00 33.41 2.18
666 668 6.788684 TTAGCGTGAACTAAATTGTGCTTA 57.211 33.333 0.00 0.00 32.93 3.09
669 706 5.449304 ACTTTAGCGTGAACTAAATTGTGC 58.551 37.500 0.00 0.00 40.41 4.57
726 763 8.036575 CCAATCAGTGTGATTTACATTCCATTT 58.963 33.333 0.00 0.00 44.03 2.32
727 764 7.396907 TCCAATCAGTGTGATTTACATTCCATT 59.603 33.333 0.00 0.00 44.03 3.16
728 765 6.891361 TCCAATCAGTGTGATTTACATTCCAT 59.109 34.615 0.00 0.00 44.03 3.41
729 766 6.244654 TCCAATCAGTGTGATTTACATTCCA 58.755 36.000 0.00 0.00 44.03 3.53
730 767 6.757897 TCCAATCAGTGTGATTTACATTCC 57.242 37.500 0.00 0.00 44.03 3.01
731 768 9.330063 TCTATCCAATCAGTGTGATTTACATTC 57.670 33.333 0.00 0.00 44.03 2.67
732 769 9.685276 TTCTATCCAATCAGTGTGATTTACATT 57.315 29.630 0.00 0.00 44.03 2.71
733 770 9.685276 TTTCTATCCAATCAGTGTGATTTACAT 57.315 29.630 0.00 0.00 44.03 2.29
734 771 9.513906 TTTTCTATCCAATCAGTGTGATTTACA 57.486 29.630 0.00 0.00 44.03 2.41
739 776 8.812513 TGAATTTTCTATCCAATCAGTGTGAT 57.187 30.769 0.00 0.00 39.09 3.06
740 777 8.812513 ATGAATTTTCTATCCAATCAGTGTGA 57.187 30.769 0.00 0.00 0.00 3.58
741 778 8.133627 GGATGAATTTTCTATCCAATCAGTGTG 58.866 37.037 12.79 0.00 40.07 3.82
753 790 7.654287 AGGGAGGTATGGATGAATTTTCTAT 57.346 36.000 0.00 0.00 0.00 1.98
769 806 0.034186 CCTGCATTGCAAGGGAGGTA 60.034 55.000 35.03 8.96 42.40 3.08
776 813 1.588082 GTGGTCCCTGCATTGCAAG 59.412 57.895 13.18 6.53 38.41 4.01
935 1097 1.209747 GTCTACCCCCTCGCTGATTTT 59.790 52.381 0.00 0.00 0.00 1.82
936 1098 0.831307 GTCTACCCCCTCGCTGATTT 59.169 55.000 0.00 0.00 0.00 2.17
969 1141 2.227865 CGTGGAAAAACAGTATGGTGGG 59.772 50.000 0.00 0.00 27.21 4.61
1033 1209 4.419939 ATCACACTCGCGCGCTGA 62.420 61.111 30.48 24.83 0.00 4.26
1883 2066 3.328505 CAACAATTCACCATTTCCAGCC 58.671 45.455 0.00 0.00 0.00 4.85
1981 2164 9.574516 ACCTTCAGAGTAAAAGAAAATGTACAT 57.425 29.630 1.41 1.41 0.00 2.29
2018 2204 5.111293 CCTTTCACAAAACATGCAAGACTT 58.889 37.500 0.00 0.00 0.00 3.01
2076 2263 8.519526 TCAGTAAATTATCCAACAATTCACCAC 58.480 33.333 0.00 0.00 0.00 4.16
2229 2416 4.184629 CAAGTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
2230 2417 3.581332 ACAAGTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2231 2418 3.933332 GACAAGTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2232 2419 4.566004 TGACAAGTATTTTGAGACGGAGG 58.434 43.478 0.00 0.00 0.00 4.30
2233 2420 5.869344 TGATGACAAGTATTTTGAGACGGAG 59.131 40.000 0.00 0.00 0.00 4.63
2234 2421 5.789521 TGATGACAAGTATTTTGAGACGGA 58.210 37.500 0.00 0.00 0.00 4.69
2235 2422 6.480524 TTGATGACAAGTATTTTGAGACGG 57.519 37.500 0.00 0.00 0.00 4.79
2236 2423 8.843733 CATTTTGATGACAAGTATTTTGAGACG 58.156 33.333 0.00 0.00 37.32 4.18
2237 2424 9.897744 TCATTTTGATGACAAGTATTTTGAGAC 57.102 29.630 0.00 0.00 37.32 3.36
2292 2479 8.600668 TGGATAAAAAGATATGCATCTAGAGCT 58.399 33.333 0.19 0.00 40.81 4.09
2293 2480 8.783833 TGGATAAAAAGATATGCATCTAGAGC 57.216 34.615 0.19 2.97 40.81 4.09
2314 2501 9.801873 CCGAAAATACTTGTTATCAAAATGGAT 57.198 29.630 0.00 0.00 32.87 3.41
2315 2502 9.015367 TCCGAAAATACTTGTTATCAAAATGGA 57.985 29.630 0.00 0.00 32.87 3.41
2316 2503 9.072294 GTCCGAAAATACTTGTTATCAAAATGG 57.928 33.333 0.00 0.00 32.87 3.16
2317 2504 8.785101 CGTCCGAAAATACTTGTTATCAAAATG 58.215 33.333 0.00 0.00 32.87 2.32
2318 2505 8.723311 TCGTCCGAAAATACTTGTTATCAAAAT 58.277 29.630 0.00 0.00 32.87 1.82
2319 2506 8.085720 TCGTCCGAAAATACTTGTTATCAAAA 57.914 30.769 0.00 0.00 32.87 2.44
2320 2507 7.655236 TCGTCCGAAAATACTTGTTATCAAA 57.345 32.000 0.00 0.00 32.87 2.69
2321 2508 7.622672 GCTTCGTCCGAAAATACTTGTTATCAA 60.623 37.037 3.52 0.00 33.34 2.57
2322 2509 6.183360 GCTTCGTCCGAAAATACTTGTTATCA 60.183 38.462 3.52 0.00 33.34 2.15
2323 2510 6.183324 GCTTCGTCCGAAAATACTTGTTATC 58.817 40.000 3.52 0.00 33.34 1.75
2324 2511 5.220340 CGCTTCGTCCGAAAATACTTGTTAT 60.220 40.000 3.52 0.00 33.34 1.89
2325 2512 4.090354 CGCTTCGTCCGAAAATACTTGTTA 59.910 41.667 3.52 0.00 33.34 2.41
2326 2513 3.120786 CGCTTCGTCCGAAAATACTTGTT 60.121 43.478 3.52 0.00 33.34 2.83
2327 2514 2.410730 CGCTTCGTCCGAAAATACTTGT 59.589 45.455 3.52 0.00 33.34 3.16
2328 2515 2.664568 TCGCTTCGTCCGAAAATACTTG 59.335 45.455 3.52 0.00 33.34 3.16
2329 2516 2.921754 CTCGCTTCGTCCGAAAATACTT 59.078 45.455 3.52 0.00 33.92 2.24
2330 2517 2.094854 ACTCGCTTCGTCCGAAAATACT 60.095 45.455 3.52 0.00 33.92 2.12
2331 2518 2.257034 ACTCGCTTCGTCCGAAAATAC 58.743 47.619 3.52 0.00 33.92 1.89
2332 2519 2.642139 ACTCGCTTCGTCCGAAAATA 57.358 45.000 3.52 0.00 33.92 1.40
2333 2520 2.257034 GTACTCGCTTCGTCCGAAAAT 58.743 47.619 3.52 0.00 33.92 1.82
2334 2521 1.001487 TGTACTCGCTTCGTCCGAAAA 60.001 47.619 3.52 0.00 33.92 2.29
2335 2522 0.592637 TGTACTCGCTTCGTCCGAAA 59.407 50.000 3.52 0.00 33.92 3.46
2336 2523 0.806868 ATGTACTCGCTTCGTCCGAA 59.193 50.000 1.81 1.81 33.92 4.30
2337 2524 0.098200 CATGTACTCGCTTCGTCCGA 59.902 55.000 0.00 0.00 0.00 4.55
2338 2525 0.179171 ACATGTACTCGCTTCGTCCG 60.179 55.000 0.00 0.00 0.00 4.79
2339 2526 1.992170 AACATGTACTCGCTTCGTCC 58.008 50.000 0.00 0.00 0.00 4.79
2340 2527 4.204573 GTCATAACATGTACTCGCTTCGTC 59.795 45.833 0.00 0.00 0.00 4.20
2341 2528 4.103357 GTCATAACATGTACTCGCTTCGT 58.897 43.478 0.00 0.00 0.00 3.85
2342 2529 4.205181 CAGTCATAACATGTACTCGCTTCG 59.795 45.833 0.00 0.00 0.00 3.79
2343 2530 5.103000 ACAGTCATAACATGTACTCGCTTC 58.897 41.667 0.00 0.00 0.00 3.86
2344 2531 5.073311 ACAGTCATAACATGTACTCGCTT 57.927 39.130 0.00 0.00 0.00 4.68
2345 2532 4.720649 ACAGTCATAACATGTACTCGCT 57.279 40.909 0.00 0.00 0.00 4.93
2346 2533 5.337554 TGTACAGTCATAACATGTACTCGC 58.662 41.667 13.88 0.00 46.04 5.03
2347 2534 7.915923 AGAATGTACAGTCATAACATGTACTCG 59.084 37.037 23.89 0.00 46.04 4.18
2348 2535 9.025020 CAGAATGTACAGTCATAACATGTACTC 57.975 37.037 23.89 6.21 46.04 2.59
2349 2536 8.932945 CAGAATGTACAGTCATAACATGTACT 57.067 34.615 23.89 0.00 46.04 2.73
2410 2600 2.765969 CCCACCTCCACCAGCAAT 59.234 61.111 0.00 0.00 0.00 3.56
2443 2633 3.452755 TGAAGCAACACTCGAAGAAGA 57.547 42.857 0.00 0.00 34.09 2.87
2481 2803 8.154649 ATTACGGAAGGAATGTACAATCATTC 57.845 34.615 23.66 23.66 44.72 2.67
2520 2842 8.608185 AAGGAGGATTTTGGCAAAGATATTTA 57.392 30.769 13.04 0.00 0.00 1.40
2553 2875 1.068474 CACGACGGTTTGAGCTTAGG 58.932 55.000 0.00 0.00 0.00 2.69
2554 2876 1.719780 GACACGACGGTTTGAGCTTAG 59.280 52.381 0.00 0.00 0.00 2.18
2558 2882 2.315386 GGGACACGACGGTTTGAGC 61.315 63.158 0.00 0.00 0.00 4.26
2571 2895 1.218047 CGATGGCGAGAAAGGGACA 59.782 57.895 0.00 0.00 40.82 4.02
2583 2907 1.675641 ACTTTCCACCAGCGATGGC 60.676 57.895 21.97 0.00 37.13 4.40
2585 2909 0.321564 TCCACTTTCCACCAGCGATG 60.322 55.000 0.00 0.00 0.00 3.84
2586 2910 0.400213 TTCCACTTTCCACCAGCGAT 59.600 50.000 0.00 0.00 0.00 4.58
2593 2917 2.552743 GCTGGTAGTTTCCACTTTCCAC 59.447 50.000 0.00 0.00 34.31 4.02
2594 2918 2.441750 AGCTGGTAGTTTCCACTTTCCA 59.558 45.455 0.00 0.00 35.69 3.53
2595 2919 2.814336 CAGCTGGTAGTTTCCACTTTCC 59.186 50.000 5.57 0.00 34.06 3.13
2596 2920 3.498777 GTCAGCTGGTAGTTTCCACTTTC 59.501 47.826 15.13 0.00 34.06 2.62
2597 2921 3.477530 GTCAGCTGGTAGTTTCCACTTT 58.522 45.455 15.13 0.00 34.06 2.66
2598 2922 2.224548 GGTCAGCTGGTAGTTTCCACTT 60.225 50.000 15.13 0.00 34.06 3.16
2599 2923 1.348036 GGTCAGCTGGTAGTTTCCACT 59.652 52.381 15.13 0.00 36.99 4.00
2640 2964 1.688884 GGGAAGGAGCTGAGAGGCT 60.689 63.158 0.00 0.00 46.11 4.58
2641 2965 1.271127 AAGGGAAGGAGCTGAGAGGC 61.271 60.000 0.00 0.00 0.00 4.70
2642 2966 2.166907 TAAGGGAAGGAGCTGAGAGG 57.833 55.000 0.00 0.00 0.00 3.69
2643 2967 3.103742 AGTTAAGGGAAGGAGCTGAGAG 58.896 50.000 0.00 0.00 0.00 3.20
2644 2968 3.191888 AGTTAAGGGAAGGAGCTGAGA 57.808 47.619 0.00 0.00 0.00 3.27
2645 2969 4.682050 GCTTAGTTAAGGGAAGGAGCTGAG 60.682 50.000 0.00 0.00 33.95 3.35
2646 2970 3.197983 GCTTAGTTAAGGGAAGGAGCTGA 59.802 47.826 0.00 0.00 33.95 4.26
2658 2982 2.000447 GCACGTCCCAGCTTAGTTAAG 59.000 52.381 0.00 0.00 36.40 1.85
2668 2992 3.716006 CTGCGTTGCACGTCCCAG 61.716 66.667 9.76 5.79 44.73 4.45
2671 2995 2.758770 TAGACCTGCGTTGCACGTCC 62.759 60.000 14.43 0.00 42.49 4.79
2672 2996 0.942410 TTAGACCTGCGTTGCACGTC 60.942 55.000 11.36 11.36 44.73 4.34
2673 2997 1.068417 TTAGACCTGCGTTGCACGT 59.932 52.632 9.76 0.00 44.73 4.49
2674 2998 1.218875 TGTTAGACCTGCGTTGCACG 61.219 55.000 4.61 4.61 45.88 5.34
2675 2999 0.941542 TTGTTAGACCTGCGTTGCAC 59.058 50.000 0.00 0.00 33.79 4.57
2676 3000 1.601903 CTTTGTTAGACCTGCGTTGCA 59.398 47.619 0.00 0.00 36.92 4.08
2677 3001 1.602377 ACTTTGTTAGACCTGCGTTGC 59.398 47.619 0.00 0.00 0.00 4.17
2678 3002 5.412526 TTTACTTTGTTAGACCTGCGTTG 57.587 39.130 0.00 0.00 0.00 4.10
2679 3003 6.439675 TTTTTACTTTGTTAGACCTGCGTT 57.560 33.333 0.00 0.00 0.00 4.84
2757 3081 9.193806 ACTTATGTCTTGCATCTGGAAATTAAT 57.806 29.630 0.00 0.00 38.94 1.40
2758 3082 8.579850 ACTTATGTCTTGCATCTGGAAATTAA 57.420 30.769 0.00 0.00 38.94 1.40
2759 3083 9.679661 TTACTTATGTCTTGCATCTGGAAATTA 57.320 29.630 0.00 0.00 38.94 1.40
2760 3084 8.579850 TTACTTATGTCTTGCATCTGGAAATT 57.420 30.769 0.00 0.00 38.94 1.82
2761 3085 8.579850 TTTACTTATGTCTTGCATCTGGAAAT 57.420 30.769 0.00 0.00 38.94 2.17
2762 3086 7.994425 TTTACTTATGTCTTGCATCTGGAAA 57.006 32.000 0.00 0.00 38.94 3.13
2763 3087 9.679661 TTATTTACTTATGTCTTGCATCTGGAA 57.320 29.630 0.00 0.00 38.94 3.53
2764 3088 9.851686 ATTATTTACTTATGTCTTGCATCTGGA 57.148 29.630 0.00 0.00 38.94 3.86
2767 3091 9.956720 GCAATTATTTACTTATGTCTTGCATCT 57.043 29.630 0.00 0.00 38.94 2.90
2768 3092 9.734620 TGCAATTATTTACTTATGTCTTGCATC 57.265 29.630 0.00 0.00 40.84 3.91
2769 3093 9.740239 CTGCAATTATTTACTTATGTCTTGCAT 57.260 29.630 6.59 0.00 43.58 3.96
2770 3094 7.701924 GCTGCAATTATTTACTTATGTCTTGCA 59.298 33.333 0.00 0.00 42.73 4.08
2771 3095 7.096885 CGCTGCAATTATTTACTTATGTCTTGC 60.097 37.037 0.00 0.00 37.54 4.01
2772 3096 8.122330 TCGCTGCAATTATTTACTTATGTCTTG 58.878 33.333 0.00 0.00 0.00 3.02
2773 3097 8.208718 TCGCTGCAATTATTTACTTATGTCTT 57.791 30.769 0.00 0.00 0.00 3.01
2774 3098 7.786178 TCGCTGCAATTATTTACTTATGTCT 57.214 32.000 0.00 0.00 0.00 3.41
2775 3099 8.835467 TTTCGCTGCAATTATTTACTTATGTC 57.165 30.769 0.00 0.00 0.00 3.06
2776 3100 9.801873 ATTTTCGCTGCAATTATTTACTTATGT 57.198 25.926 0.00 0.00 0.00 2.29
2786 3110 9.450807 GTGAGTAATTATTTTCGCTGCAATTAT 57.549 29.630 0.00 0.00 0.00 1.28
2787 3111 7.913297 GGTGAGTAATTATTTTCGCTGCAATTA 59.087 33.333 0.00 0.00 0.00 1.40
2788 3112 6.751888 GGTGAGTAATTATTTTCGCTGCAATT 59.248 34.615 0.00 0.00 0.00 2.32
2789 3113 6.265577 GGTGAGTAATTATTTTCGCTGCAAT 58.734 36.000 0.00 0.00 0.00 3.56
2790 3114 5.392595 GGGTGAGTAATTATTTTCGCTGCAA 60.393 40.000 0.00 0.00 0.00 4.08
2791 3115 4.095782 GGGTGAGTAATTATTTTCGCTGCA 59.904 41.667 0.00 0.00 0.00 4.41
2792 3116 4.335594 AGGGTGAGTAATTATTTTCGCTGC 59.664 41.667 0.00 0.00 0.00 5.25
2793 3117 6.761714 ACTAGGGTGAGTAATTATTTTCGCTG 59.238 38.462 0.00 6.14 0.00 5.18
2794 3118 6.885922 ACTAGGGTGAGTAATTATTTTCGCT 58.114 36.000 0.00 0.00 0.00 4.93
2795 3119 7.924947 AGTACTAGGGTGAGTAATTATTTTCGC 59.075 37.037 0.00 0.00 33.74 4.70
2910 3234 9.081204 CCCTTGATCATCAATTTGACCAATATA 57.919 33.333 0.00 0.00 35.59 0.86
2911 3235 7.015877 CCCCTTGATCATCAATTTGACCAATAT 59.984 37.037 0.00 0.00 35.59 1.28
2912 3236 6.324512 CCCCTTGATCATCAATTTGACCAATA 59.675 38.462 0.00 0.00 35.59 1.90
2913 3237 5.129815 CCCCTTGATCATCAATTTGACCAAT 59.870 40.000 0.00 0.00 35.59 3.16
2914 3238 4.467082 CCCCTTGATCATCAATTTGACCAA 59.533 41.667 0.00 3.80 35.59 3.67
2915 3239 4.025360 CCCCTTGATCATCAATTTGACCA 58.975 43.478 0.00 0.00 35.59 4.02
2916 3240 4.026052 ACCCCTTGATCATCAATTTGACC 58.974 43.478 0.00 0.00 35.59 4.02
2917 3241 5.220854 CGTACCCCTTGATCATCAATTTGAC 60.221 44.000 0.00 0.00 35.59 3.18
2918 3242 4.881273 CGTACCCCTTGATCATCAATTTGA 59.119 41.667 0.00 0.75 35.59 2.69
2919 3243 4.498009 GCGTACCCCTTGATCATCAATTTG 60.498 45.833 0.00 0.00 35.59 2.32
2920 3244 3.632145 GCGTACCCCTTGATCATCAATTT 59.368 43.478 0.00 0.00 35.59 1.82
2921 3245 3.214328 GCGTACCCCTTGATCATCAATT 58.786 45.455 0.00 0.00 35.59 2.32
2922 3246 2.806745 CGCGTACCCCTTGATCATCAAT 60.807 50.000 0.00 0.00 35.59 2.57
2923 3247 1.472552 CGCGTACCCCTTGATCATCAA 60.473 52.381 0.00 0.00 34.79 2.57
2924 3248 0.104120 CGCGTACCCCTTGATCATCA 59.896 55.000 0.00 0.00 0.00 3.07
2925 3249 1.222115 GCGCGTACCCCTTGATCATC 61.222 60.000 8.43 0.00 0.00 2.92
2926 3250 1.227556 GCGCGTACCCCTTGATCAT 60.228 57.895 8.43 0.00 0.00 2.45
2927 3251 2.185867 GCGCGTACCCCTTGATCA 59.814 61.111 8.43 0.00 0.00 2.92
2928 3252 2.171725 GTGCGCGTACCCCTTGATC 61.172 63.158 17.10 0.00 0.00 2.92
2929 3253 2.125269 GTGCGCGTACCCCTTGAT 60.125 61.111 17.10 0.00 0.00 2.57
2930 3254 4.728102 CGTGCGCGTACCCCTTGA 62.728 66.667 21.71 0.00 0.00 3.02
2940 3264 2.019951 AGTTTACAGGACGTGCGCG 61.020 57.895 19.78 19.78 44.93 6.86
2941 3265 1.491563 CAGTTTACAGGACGTGCGC 59.508 57.895 0.00 0.00 0.00 6.09
2942 3266 1.289109 CCCAGTTTACAGGACGTGCG 61.289 60.000 0.00 0.00 0.00 5.34
2943 3267 0.034337 TCCCAGTTTACAGGACGTGC 59.966 55.000 0.00 0.00 0.00 5.34
2944 3268 1.939838 GCTCCCAGTTTACAGGACGTG 60.940 57.143 0.00 0.00 0.00 4.49
2945 3269 0.320697 GCTCCCAGTTTACAGGACGT 59.679 55.000 0.00 0.00 0.00 4.34
2946 3270 0.736325 CGCTCCCAGTTTACAGGACG 60.736 60.000 0.00 0.00 0.00 4.79
2947 3271 0.606604 TCGCTCCCAGTTTACAGGAC 59.393 55.000 0.00 0.00 0.00 3.85
2948 3272 0.895530 CTCGCTCCCAGTTTACAGGA 59.104 55.000 0.00 0.00 0.00 3.86
2949 3273 3.442996 CTCGCTCCCAGTTTACAGG 57.557 57.895 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.