Multiple sequence alignment - TraesCS7B01G235300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G235300 chr7B 100.000 2531 0 0 1 2531 439604975 439602445 0.000000e+00 4674.0
1 TraesCS7B01G235300 chr7B 87.089 426 39 6 1131 1544 439589904 439589483 3.810000e-128 468.0
2 TraesCS7B01G235300 chr7B 80.734 109 4 9 2321 2429 680667808 680667899 4.520000e-08 69.4
3 TraesCS7B01G235300 chr7D 91.394 1743 96 25 115 1833 422619133 422617421 0.000000e+00 2338.0
4 TraesCS7B01G235300 chr7D 88.581 902 64 12 766 1641 422571983 422571095 0.000000e+00 1059.0
5 TraesCS7B01G235300 chr7D 83.735 498 45 13 1859 2321 422598082 422597586 2.990000e-119 438.0
6 TraesCS7B01G235300 chr7D 86.154 65 6 3 1822 1885 1470229 1470291 1.620000e-07 67.6
7 TraesCS7B01G235300 chr7D 94.737 38 2 0 2319 2356 148165966 148166003 2.720000e-05 60.2
8 TraesCS7B01G235300 chr7A 91.613 1550 76 22 115 1637 510551348 510552870 0.000000e+00 2093.0
9 TraesCS7B01G235300 chr7A 87.118 916 75 21 755 1641 510732295 510733196 0.000000e+00 998.0
10 TraesCS7B01G235300 chr7A 86.275 408 31 8 270 664 510731900 510732295 1.080000e-113 420.0
11 TraesCS7B01G235300 chr1D 86.779 953 69 27 643 1554 408960239 408961175 0.000000e+00 1009.0
12 TraesCS7B01G235300 chr1D 88.485 495 36 10 146 622 408940755 408941246 1.690000e-161 579.0
13 TraesCS7B01G235300 chr1D 87.129 101 4 5 2323 2423 315671383 315671474 3.440000e-19 106.0
14 TraesCS7B01G235300 chr1D 81.915 94 7 6 2320 2413 448539215 448539298 1.260000e-08 71.3
15 TraesCS7B01G235300 chr1B 83.487 757 72 26 879 1622 550501721 550502437 0.000000e+00 656.0
16 TraesCS7B01G235300 chr1B 86.562 573 39 14 349 896 550759669 550760228 4.660000e-167 597.0
17 TraesCS7B01G235300 chr1B 83.186 565 74 11 1066 1618 550766841 550767396 4.860000e-137 497.0
18 TraesCS7B01G235300 chr1B 90.449 178 15 2 144 319 550759491 550759668 1.510000e-57 233.0
19 TraesCS7B01G235300 chr1B 92.857 112 8 0 770 881 550501328 550501439 2.010000e-36 163.0
20 TraesCS7B01G235300 chr1B 92.453 106 7 1 307 412 550498870 550498974 1.570000e-32 150.0
21 TraesCS7B01G235300 chr1B 89.744 117 11 1 3 118 565974972 565974856 5.640000e-32 148.0
22 TraesCS7B01G235300 chr1B 86.916 107 4 6 2323 2429 107506472 107506568 7.400000e-21 111.0
23 TraesCS7B01G235300 chr4A 94.313 211 5 1 2321 2531 691146789 691146992 1.460000e-82 316.0
24 TraesCS7B01G235300 chr4A 85.981 107 5 4 2323 2429 728683573 728683477 3.440000e-19 106.0
25 TraesCS7B01G235300 chr5B 89.916 119 12 0 1 119 412653509 412653391 1.210000e-33 154.0
26 TraesCS7B01G235300 chr3D 89.076 119 13 0 1 119 129355814 129355696 5.640000e-32 148.0
27 TraesCS7B01G235300 chr3D 85.981 107 5 3 2323 2429 577377216 577377120 3.440000e-19 106.0
28 TraesCS7B01G235300 chr3D 80.172 116 13 7 2314 2429 47788332 47788437 7.510000e-11 78.7
29 TraesCS7B01G235300 chr2B 89.076 119 13 0 1 119 789969750 789969632 5.640000e-32 148.0
30 TraesCS7B01G235300 chr2B 86.916 107 5 4 2323 2429 632861183 632861086 7.400000e-21 111.0
31 TraesCS7B01G235300 chr2B 85.714 105 6 3 2320 2424 281936037 281936132 4.450000e-18 102.0
32 TraesCS7B01G235300 chr3B 91.509 106 9 0 1 106 725858942 725859047 2.030000e-31 147.0
33 TraesCS7B01G235300 chr3B 80.488 164 22 7 1736 1895 579893744 579893587 1.590000e-22 117.0
34 TraesCS7B01G235300 chr2A 90.909 110 9 1 1 110 740158198 740158306 2.030000e-31 147.0
35 TraesCS7B01G235300 chr2A 88.235 119 13 1 1 119 766891485 766891602 9.440000e-30 141.0
36 TraesCS7B01G235300 chr2A 79.808 104 12 5 2321 2424 18298966 18299060 1.620000e-07 67.6
37 TraesCS7B01G235300 chrUn 88.235 119 14 0 1 119 335180317 335180435 2.620000e-30 143.0
38 TraesCS7B01G235300 chrUn 85.185 108 5 6 2323 2429 22556889 22556986 1.600000e-17 100.0
39 TraesCS7B01G235300 chr2D 79.263 217 36 6 1703 1914 159321902 159322114 2.620000e-30 143.0
40 TraesCS7B01G235300 chr2D 78.070 114 11 7 2318 2429 578445642 578445743 2.720000e-05 60.2
41 TraesCS7B01G235300 chr4D 88.235 119 13 1 1 119 440809622 440809739 9.440000e-30 141.0
42 TraesCS7B01G235300 chr4D 97.143 35 1 0 2322 2356 386541809 386541843 2.720000e-05 60.2
43 TraesCS7B01G235300 chr3A 79.426 209 35 5 1709 1913 716967813 716967609 9.440000e-30 141.0
44 TraesCS7B01G235300 chr4B 77.333 225 40 10 1697 1913 515563867 515563646 3.420000e-24 122.0
45 TraesCS7B01G235300 chr5D 86.916 107 4 3 2323 2429 534099861 534099957 7.400000e-21 111.0
46 TraesCS7B01G235300 chr5D 97.436 39 0 1 2000 2037 129485569 129485531 5.840000e-07 65.8
47 TraesCS7B01G235300 chr1A 90.361 83 8 0 328 410 505103977 505104059 2.660000e-20 110.0
48 TraesCS7B01G235300 chr6D 94.737 38 2 0 2322 2359 25945638 25945601 2.720000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G235300 chr7B 439602445 439604975 2530 True 4674 4674 100.0000 1 2531 1 chr7B.!!$R2 2530
1 TraesCS7B01G235300 chr7D 422617421 422619133 1712 True 2338 2338 91.3940 115 1833 1 chr7D.!!$R3 1718
2 TraesCS7B01G235300 chr7D 422571095 422571983 888 True 1059 1059 88.5810 766 1641 1 chr7D.!!$R1 875
3 TraesCS7B01G235300 chr7A 510551348 510552870 1522 False 2093 2093 91.6130 115 1637 1 chr7A.!!$F1 1522
4 TraesCS7B01G235300 chr7A 510731900 510733196 1296 False 709 998 86.6965 270 1641 2 chr7A.!!$F2 1371
5 TraesCS7B01G235300 chr1D 408960239 408961175 936 False 1009 1009 86.7790 643 1554 1 chr1D.!!$F3 911
6 TraesCS7B01G235300 chr1B 550766841 550767396 555 False 497 497 83.1860 1066 1618 1 chr1B.!!$F2 552
7 TraesCS7B01G235300 chr1B 550759491 550760228 737 False 415 597 88.5055 144 896 2 chr1B.!!$F4 752
8 TraesCS7B01G235300 chr1B 550498870 550502437 3567 False 323 656 89.5990 307 1622 3 chr1B.!!$F3 1315

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 507 0.178891 TCCTCCTTGAGAGCCTTGGT 60.179 55.0 0.0 0.0 41.74 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1896 4344 0.030369 GCGTACTACCTCCGTCATGG 59.97 60.0 0.0 0.0 40.09 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.078516 CGGGTTCGACCTGGGTCC 62.079 72.222 13.41 0.93 41.01 4.46
20 21 4.078516 GGGTTCGACCTGGGTCCG 62.079 72.222 13.41 9.11 41.76 4.79
21 22 4.754667 GGTTCGACCTGGGTCCGC 62.755 72.222 13.41 4.70 41.76 5.54
22 23 4.754667 GTTCGACCTGGGTCCGCC 62.755 72.222 13.41 0.00 41.76 6.13
38 39 3.564027 CCGGCGCTGATTTCGGTC 61.564 66.667 20.25 0.00 37.92 4.79
39 40 3.564027 CGGCGCTGATTTCGGTCC 61.564 66.667 11.90 0.00 0.00 4.46
40 41 2.435938 GGCGCTGATTTCGGTCCA 60.436 61.111 7.64 0.00 0.00 4.02
41 42 2.038269 GGCGCTGATTTCGGTCCAA 61.038 57.895 7.64 0.00 0.00 3.53
42 43 1.425428 GCGCTGATTTCGGTCCAAG 59.575 57.895 0.00 0.00 0.00 3.61
43 44 1.425428 CGCTGATTTCGGTCCAAGC 59.575 57.895 0.00 0.00 0.00 4.01
44 45 1.803289 GCTGATTTCGGTCCAAGCC 59.197 57.895 0.00 0.00 0.00 4.35
66 67 3.257133 AAAAACGGGCTCCTGGGA 58.743 55.556 0.00 0.00 0.00 4.37
67 68 1.074951 AAAAACGGGCTCCTGGGAG 59.925 57.895 11.97 11.97 44.56 4.30
75 76 4.504916 CTCCTGGGAGCGCGACTG 62.505 72.222 12.10 0.04 35.31 3.51
85 86 3.656045 CGCGACTGGGCCGTTTTT 61.656 61.111 0.00 0.00 0.00 1.94
238 242 2.728690 TCATCAAGCTTGCGCAAAAT 57.271 40.000 25.01 12.64 39.10 1.82
245 249 6.297694 TCAAGCTTGCGCAAAATAAATTTT 57.702 29.167 25.01 6.76 40.37 1.82
253 257 7.215696 TGCGCAAAATAAATTTTAATCGAGG 57.784 32.000 8.16 0.68 37.86 4.63
370 375 7.156876 TGTTTTTGAACTGACTGAAATGTCT 57.843 32.000 0.00 0.00 37.79 3.41
383 388 9.797642 TGACTGAAATGTCTTGCCATATATTAT 57.202 29.630 0.00 0.00 37.79 1.28
446 466 4.085721 CGCACGTTTAGATCGTAATCCTTC 60.086 45.833 0.00 0.00 39.55 3.46
475 495 1.406751 GCCTCTTTCCTCCTTGAGAGC 60.407 57.143 0.00 0.00 41.74 4.09
481 507 0.178891 TCCTCCTTGAGAGCCTTGGT 60.179 55.000 0.00 0.00 41.74 3.67
578 650 1.324736 GGCTCGAACACGATAAGCTTG 59.675 52.381 9.86 0.00 35.51 4.01
664 1074 2.851263 TACCCTGCATTTCTGTCGTT 57.149 45.000 0.00 0.00 0.00 3.85
721 1132 4.691860 CCCTAATTGGCATTCGATCATC 57.308 45.455 0.00 0.00 0.00 2.92
724 1135 5.184479 CCCTAATTGGCATTCGATCATCATT 59.816 40.000 0.00 0.00 0.00 2.57
725 1136 6.375174 CCCTAATTGGCATTCGATCATCATTA 59.625 38.462 0.00 0.00 0.00 1.90
726 1137 7.067859 CCCTAATTGGCATTCGATCATCATTAT 59.932 37.037 0.00 0.00 0.00 1.28
727 1138 9.112725 CCTAATTGGCATTCGATCATCATTATA 57.887 33.333 0.00 0.00 0.00 0.98
934 3280 3.119884 CGCCATTAATGCTCACAAGTCAA 60.120 43.478 10.11 0.00 0.00 3.18
935 3281 4.418392 GCCATTAATGCTCACAAGTCAAG 58.582 43.478 10.11 0.00 0.00 3.02
1182 3566 0.453793 CGATCCTGTTCGTGCTCTCT 59.546 55.000 0.00 0.00 34.46 3.10
1535 3965 2.433664 CCCGCCGGTGTAGTTGTC 60.434 66.667 15.14 0.00 0.00 3.18
1566 4006 4.332819 GTGCCAGGACATAAGATTGTACAC 59.667 45.833 0.00 0.00 32.50 2.90
1649 4095 7.080099 TCGAATACCGTATACTCTTTACATGC 58.920 38.462 0.56 0.00 39.75 4.06
1667 4113 4.833126 CATGCTTAATGTGTTACTACCGC 58.167 43.478 0.00 0.00 0.00 5.68
1686 4132 2.606272 CGCCGTCCTGTTTTATTAGTCC 59.394 50.000 0.00 0.00 0.00 3.85
1691 4137 6.622245 GCCGTCCTGTTTTATTAGTCCTTTTC 60.622 42.308 0.00 0.00 0.00 2.29
1692 4138 6.428771 CCGTCCTGTTTTATTAGTCCTTTTCA 59.571 38.462 0.00 0.00 0.00 2.69
1693 4139 7.040961 CCGTCCTGTTTTATTAGTCCTTTTCAA 60.041 37.037 0.00 0.00 0.00 2.69
1694 4140 8.347035 CGTCCTGTTTTATTAGTCCTTTTCAAA 58.653 33.333 0.00 0.00 0.00 2.69
1708 4154 9.599866 AGTCCTTTTCAAAAATTAGTCCTTTTG 57.400 29.630 1.73 1.73 41.70 2.44
1745 4191 7.754851 AAACTTGACCACGGATTTAACTAAT 57.245 32.000 0.00 0.00 0.00 1.73
1749 4195 8.943002 ACTTGACCACGGATTTAACTAATAAAG 58.057 33.333 0.00 0.00 36.94 1.85
1812 4260 6.147164 CGTATTTGAACATAGTCCGGCAATAT 59.853 38.462 0.00 0.00 0.00 1.28
1815 4263 8.635765 ATTTGAACATAGTCCGGCAATATTAT 57.364 30.769 0.00 0.00 0.00 1.28
1816 4264 9.733556 ATTTGAACATAGTCCGGCAATATTATA 57.266 29.630 0.00 0.00 0.00 0.98
1817 4265 8.542497 TTGAACATAGTCCGGCAATATTATAC 57.458 34.615 0.00 0.00 0.00 1.47
1907 4355 5.295152 GTTACTAATAACCCATGACGGAGG 58.705 45.833 0.00 0.00 35.56 4.30
1908 4356 3.381335 ACTAATAACCCATGACGGAGGT 58.619 45.455 0.00 0.00 36.56 3.85
1909 4357 4.549668 ACTAATAACCCATGACGGAGGTA 58.450 43.478 0.00 0.00 36.56 3.08
1910 4358 4.587684 ACTAATAACCCATGACGGAGGTAG 59.412 45.833 0.00 0.00 36.56 3.18
1911 4359 2.537633 TAACCCATGACGGAGGTAGT 57.462 50.000 0.00 0.00 36.56 2.73
1912 4360 2.537633 AACCCATGACGGAGGTAGTA 57.462 50.000 0.00 0.00 36.56 1.82
1913 4361 1.772836 ACCCATGACGGAGGTAGTAC 58.227 55.000 0.00 0.00 36.56 2.73
1914 4362 0.666913 CCCATGACGGAGGTAGTACG 59.333 60.000 0.00 0.00 36.56 3.67
1915 4363 0.030369 CCATGACGGAGGTAGTACGC 59.970 60.000 0.00 0.00 36.56 4.42
1916 4364 1.022735 CATGACGGAGGTAGTACGCT 58.977 55.000 0.00 0.00 0.00 5.07
1917 4365 2.216046 CATGACGGAGGTAGTACGCTA 58.784 52.381 0.00 0.00 0.00 4.26
1918 4366 1.656652 TGACGGAGGTAGTACGCTAC 58.343 55.000 0.00 0.00 45.13 3.58
1919 4367 1.208052 TGACGGAGGTAGTACGCTACT 59.792 52.381 5.00 2.46 45.18 2.57
1920 4368 1.864082 GACGGAGGTAGTACGCTACTC 59.136 57.143 5.00 0.00 45.18 2.59
1921 4369 1.224965 CGGAGGTAGTACGCTACTCC 58.775 60.000 14.86 14.86 45.18 3.85
1922 4370 1.473965 CGGAGGTAGTACGCTACTCCA 60.474 57.143 20.85 0.00 45.18 3.86
1923 4371 2.809665 CGGAGGTAGTACGCTACTCCAT 60.810 54.545 20.85 0.02 45.18 3.41
1924 4372 3.555795 CGGAGGTAGTACGCTACTCCATA 60.556 52.174 20.85 0.00 45.18 2.74
1925 4373 3.750652 GGAGGTAGTACGCTACTCCATAC 59.249 52.174 18.06 0.84 45.18 2.39
1926 4374 4.504689 GGAGGTAGTACGCTACTCCATACT 60.505 50.000 18.06 0.00 45.18 2.12
1927 4375 4.640364 AGGTAGTACGCTACTCCATACTC 58.360 47.826 5.00 0.00 45.18 2.59
1928 4376 4.347583 AGGTAGTACGCTACTCCATACTCT 59.652 45.833 5.00 0.00 45.18 3.24
1929 4377 4.690280 GGTAGTACGCTACTCCATACTCTC 59.310 50.000 5.00 0.00 45.18 3.20
1930 4378 4.693042 AGTACGCTACTCCATACTCTCT 57.307 45.455 0.00 0.00 32.47 3.10
1931 4379 4.382291 AGTACGCTACTCCATACTCTCTG 58.618 47.826 0.00 0.00 32.47 3.35
1932 4380 3.284793 ACGCTACTCCATACTCTCTGT 57.715 47.619 0.00 0.00 0.00 3.41
1933 4381 2.946329 ACGCTACTCCATACTCTCTGTG 59.054 50.000 0.00 0.00 0.00 3.66
1934 4382 2.946329 CGCTACTCCATACTCTCTGTGT 59.054 50.000 0.00 0.00 0.00 3.72
1935 4383 3.002862 CGCTACTCCATACTCTCTGTGTC 59.997 52.174 0.00 0.00 0.00 3.67
1936 4384 4.204012 GCTACTCCATACTCTCTGTGTCT 58.796 47.826 0.00 0.00 0.00 3.41
1937 4385 4.036262 GCTACTCCATACTCTCTGTGTCTG 59.964 50.000 0.00 0.00 0.00 3.51
1938 4386 4.308526 ACTCCATACTCTCTGTGTCTGA 57.691 45.455 0.00 0.00 0.00 3.27
1939 4387 4.667573 ACTCCATACTCTCTGTGTCTGAA 58.332 43.478 0.00 0.00 0.00 3.02
1940 4388 5.080337 ACTCCATACTCTCTGTGTCTGAAA 58.920 41.667 0.00 0.00 0.00 2.69
1941 4389 5.540337 ACTCCATACTCTCTGTGTCTGAAAA 59.460 40.000 0.00 0.00 0.00 2.29
1942 4390 6.212388 ACTCCATACTCTCTGTGTCTGAAAAT 59.788 38.462 0.00 0.00 0.00 1.82
1943 4391 7.397476 ACTCCATACTCTCTGTGTCTGAAAATA 59.603 37.037 0.00 0.00 0.00 1.40
1944 4392 8.134202 TCCATACTCTCTGTGTCTGAAAATAA 57.866 34.615 0.00 0.00 0.00 1.40
1945 4393 8.035394 TCCATACTCTCTGTGTCTGAAAATAAC 58.965 37.037 0.00 0.00 0.00 1.89
1946 4394 7.819415 CCATACTCTCTGTGTCTGAAAATAACA 59.181 37.037 0.00 0.00 0.00 2.41
1947 4395 9.376075 CATACTCTCTGTGTCTGAAAATAACAT 57.624 33.333 0.00 0.00 0.00 2.71
1948 4396 9.950496 ATACTCTCTGTGTCTGAAAATAACATT 57.050 29.630 0.00 0.00 0.00 2.71
1949 4397 8.092521 ACTCTCTGTGTCTGAAAATAACATTG 57.907 34.615 0.00 0.00 0.00 2.82
1950 4398 7.716998 ACTCTCTGTGTCTGAAAATAACATTGT 59.283 33.333 0.00 0.00 0.00 2.71
1951 4399 9.208022 CTCTCTGTGTCTGAAAATAACATTGTA 57.792 33.333 0.00 0.00 0.00 2.41
1952 4400 9.725019 TCTCTGTGTCTGAAAATAACATTGTAT 57.275 29.630 0.00 0.00 0.00 2.29
1962 4410 9.646427 TGAAAATAACATTGTATTTTAGGTGCC 57.354 29.630 12.69 0.00 41.53 5.01
1963 4411 9.869757 GAAAATAACATTGTATTTTAGGTGCCT 57.130 29.630 12.69 0.00 41.53 4.75
1967 4415 9.695155 ATAACATTGTATTTTAGGTGCCTTACT 57.305 29.630 0.00 0.00 0.00 2.24
1968 4416 7.391148 ACATTGTATTTTAGGTGCCTTACTG 57.609 36.000 0.00 0.00 0.00 2.74
1969 4417 5.890424 TTGTATTTTAGGTGCCTTACTGC 57.110 39.130 0.00 0.00 0.00 4.40
1970 4418 4.266714 TGTATTTTAGGTGCCTTACTGCC 58.733 43.478 0.00 0.00 0.00 4.85
1971 4419 2.209690 TTTTAGGTGCCTTACTGCCC 57.790 50.000 0.00 0.00 0.00 5.36
1972 4420 0.330267 TTTAGGTGCCTTACTGCCCC 59.670 55.000 0.00 0.00 0.00 5.80
1973 4421 0.842905 TTAGGTGCCTTACTGCCCCA 60.843 55.000 0.00 0.00 30.25 4.96
1974 4422 1.271840 TAGGTGCCTTACTGCCCCAG 61.272 60.000 0.00 0.00 37.52 4.45
1976 4424 1.559065 GGTGCCTTACTGCCCCAGTA 61.559 60.000 1.18 1.18 43.46 2.74
1977 4425 0.546598 GTGCCTTACTGCCCCAGTAT 59.453 55.000 5.97 0.00 44.85 2.12
1978 4426 1.064685 GTGCCTTACTGCCCCAGTATT 60.065 52.381 5.97 0.00 44.85 1.89
1979 4427 2.171870 GTGCCTTACTGCCCCAGTATTA 59.828 50.000 5.97 0.00 44.85 0.98
1980 4428 3.053077 TGCCTTACTGCCCCAGTATTAT 58.947 45.455 5.97 0.00 44.85 1.28
1981 4429 3.461831 TGCCTTACTGCCCCAGTATTATT 59.538 43.478 5.97 0.00 44.85 1.40
1982 4430 4.661240 TGCCTTACTGCCCCAGTATTATTA 59.339 41.667 5.97 0.00 44.85 0.98
1983 4431 5.221843 TGCCTTACTGCCCCAGTATTATTAG 60.222 44.000 5.97 1.21 44.85 1.73
1984 4432 5.012768 GCCTTACTGCCCCAGTATTATTAGA 59.987 44.000 5.97 0.00 44.85 2.10
1985 4433 6.296489 GCCTTACTGCCCCAGTATTATTAGAT 60.296 42.308 5.97 0.00 44.85 1.98
1986 4434 7.690256 CCTTACTGCCCCAGTATTATTAGATT 58.310 38.462 5.97 0.00 44.85 2.40
1987 4435 8.164070 CCTTACTGCCCCAGTATTATTAGATTT 58.836 37.037 5.97 0.00 44.85 2.17
1988 4436 9.220767 CTTACTGCCCCAGTATTATTAGATTTC 57.779 37.037 5.97 0.00 44.85 2.17
1989 4437 6.543735 ACTGCCCCAGTATTATTAGATTTCC 58.456 40.000 0.00 0.00 43.46 3.13
1990 4438 6.332901 ACTGCCCCAGTATTATTAGATTTCCT 59.667 38.462 0.00 0.00 43.46 3.36
1991 4439 7.147123 ACTGCCCCAGTATTATTAGATTTCCTT 60.147 37.037 0.00 0.00 43.46 3.36
1992 4440 7.591821 TGCCCCAGTATTATTAGATTTCCTTT 58.408 34.615 0.00 0.00 0.00 3.11
1993 4441 8.065007 TGCCCCAGTATTATTAGATTTCCTTTT 58.935 33.333 0.00 0.00 0.00 2.27
1994 4442 9.582648 GCCCCAGTATTATTAGATTTCCTTTTA 57.417 33.333 0.00 0.00 0.00 1.52
2221 4669 4.846779 TTTTGGAAGTTAATGAAGCGCT 57.153 36.364 2.64 2.64 0.00 5.92
2222 4670 4.419522 TTTGGAAGTTAATGAAGCGCTC 57.580 40.909 12.06 4.99 0.00 5.03
2223 4671 3.334583 TGGAAGTTAATGAAGCGCTCT 57.665 42.857 12.06 0.00 0.00 4.09
2224 4672 3.674997 TGGAAGTTAATGAAGCGCTCTT 58.325 40.909 12.06 7.82 34.68 2.85
2225 4673 3.684788 TGGAAGTTAATGAAGCGCTCTTC 59.315 43.478 12.06 16.81 46.85 2.87
2226 4674 3.935828 GGAAGTTAATGAAGCGCTCTTCT 59.064 43.478 23.67 5.93 46.81 2.85
2227 4675 4.033472 GGAAGTTAATGAAGCGCTCTTCTC 59.967 45.833 23.67 14.34 46.81 2.87
2228 4676 3.182967 AGTTAATGAAGCGCTCTTCTCG 58.817 45.455 12.06 0.00 46.81 4.04
2237 4685 2.828933 GCTCTTCTCGCGAAAACCT 58.171 52.632 11.33 0.00 0.00 3.50
2238 4686 1.992170 GCTCTTCTCGCGAAAACCTA 58.008 50.000 11.33 0.00 0.00 3.08
2239 4687 2.541556 GCTCTTCTCGCGAAAACCTAT 58.458 47.619 11.33 0.00 0.00 2.57
2240 4688 2.282820 GCTCTTCTCGCGAAAACCTATG 59.717 50.000 11.33 0.00 0.00 2.23
2241 4689 2.268298 TCTTCTCGCGAAAACCTATGC 58.732 47.619 11.33 0.00 0.00 3.14
2242 4690 1.327764 CTTCTCGCGAAAACCTATGCC 59.672 52.381 11.33 0.00 0.00 4.40
2243 4691 0.248012 TCTCGCGAAAACCTATGCCA 59.752 50.000 11.33 0.00 0.00 4.92
2244 4692 1.083489 CTCGCGAAAACCTATGCCAA 58.917 50.000 11.33 0.00 0.00 4.52
2245 4693 1.670811 CTCGCGAAAACCTATGCCAAT 59.329 47.619 11.33 0.00 0.00 3.16
2246 4694 1.400142 TCGCGAAAACCTATGCCAATG 59.600 47.619 6.20 0.00 0.00 2.82
2247 4695 1.132262 CGCGAAAACCTATGCCAATGT 59.868 47.619 0.00 0.00 0.00 2.71
2248 4696 2.353269 CGCGAAAACCTATGCCAATGTA 59.647 45.455 0.00 0.00 0.00 2.29
2249 4697 3.691498 GCGAAAACCTATGCCAATGTAC 58.309 45.455 0.00 0.00 0.00 2.90
2250 4698 3.377172 GCGAAAACCTATGCCAATGTACT 59.623 43.478 0.00 0.00 0.00 2.73
2251 4699 4.573201 GCGAAAACCTATGCCAATGTACTA 59.427 41.667 0.00 0.00 0.00 1.82
2252 4700 5.238650 GCGAAAACCTATGCCAATGTACTAT 59.761 40.000 0.00 0.00 0.00 2.12
2253 4701 6.658831 CGAAAACCTATGCCAATGTACTATG 58.341 40.000 0.00 0.00 0.00 2.23
2254 4702 6.260050 CGAAAACCTATGCCAATGTACTATGT 59.740 38.462 0.00 0.00 0.00 2.29
2255 4703 6.942532 AAACCTATGCCAATGTACTATGTG 57.057 37.500 0.00 0.00 0.00 3.21
2256 4704 5.630415 ACCTATGCCAATGTACTATGTGT 57.370 39.130 0.00 0.00 0.00 3.72
2257 4705 6.740944 ACCTATGCCAATGTACTATGTGTA 57.259 37.500 0.00 0.00 0.00 2.90
2268 4716 5.697848 GTACTATGTGTACCGCTTTTCTG 57.302 43.478 0.00 0.00 44.21 3.02
2269 4717 4.267349 ACTATGTGTACCGCTTTTCTGT 57.733 40.909 0.00 0.00 0.00 3.41
2270 4718 4.243270 ACTATGTGTACCGCTTTTCTGTC 58.757 43.478 0.00 0.00 0.00 3.51
2271 4719 2.605837 TGTGTACCGCTTTTCTGTCA 57.394 45.000 0.00 0.00 0.00 3.58
2272 4720 2.907634 TGTGTACCGCTTTTCTGTCAA 58.092 42.857 0.00 0.00 0.00 3.18
2273 4721 3.271729 TGTGTACCGCTTTTCTGTCAAA 58.728 40.909 0.00 0.00 0.00 2.69
2274 4722 3.880490 TGTGTACCGCTTTTCTGTCAAAT 59.120 39.130 0.00 0.00 0.00 2.32
2275 4723 4.024387 TGTGTACCGCTTTTCTGTCAAATC 60.024 41.667 0.00 0.00 0.00 2.17
2276 4724 4.024387 GTGTACCGCTTTTCTGTCAAATCA 60.024 41.667 0.00 0.00 0.00 2.57
2277 4725 3.626028 ACCGCTTTTCTGTCAAATCAC 57.374 42.857 0.00 0.00 0.00 3.06
2278 4726 3.214328 ACCGCTTTTCTGTCAAATCACT 58.786 40.909 0.00 0.00 0.00 3.41
2279 4727 3.251004 ACCGCTTTTCTGTCAAATCACTC 59.749 43.478 0.00 0.00 0.00 3.51
2280 4728 3.499918 CCGCTTTTCTGTCAAATCACTCT 59.500 43.478 0.00 0.00 0.00 3.24
2281 4729 4.690748 CCGCTTTTCTGTCAAATCACTCTA 59.309 41.667 0.00 0.00 0.00 2.43
2282 4730 5.179368 CCGCTTTTCTGTCAAATCACTCTAA 59.821 40.000 0.00 0.00 0.00 2.10
2283 4731 6.128172 CCGCTTTTCTGTCAAATCACTCTAAT 60.128 38.462 0.00 0.00 0.00 1.73
2284 4732 7.064609 CCGCTTTTCTGTCAAATCACTCTAATA 59.935 37.037 0.00 0.00 0.00 0.98
2285 4733 8.113062 CGCTTTTCTGTCAAATCACTCTAATAG 58.887 37.037 0.00 0.00 0.00 1.73
2286 4734 8.940952 GCTTTTCTGTCAAATCACTCTAATAGT 58.059 33.333 0.00 0.00 39.81 2.12
2288 4736 8.689251 TTTCTGTCAAATCACTCTAATAGTCG 57.311 34.615 0.00 0.00 35.76 4.18
2289 4737 6.266323 TCTGTCAAATCACTCTAATAGTCGC 58.734 40.000 0.00 0.00 35.76 5.19
2290 4738 5.961272 TGTCAAATCACTCTAATAGTCGCA 58.039 37.500 0.00 0.00 35.76 5.10
2291 4739 6.573434 TGTCAAATCACTCTAATAGTCGCAT 58.427 36.000 0.00 0.00 35.76 4.73
2292 4740 7.041721 TGTCAAATCACTCTAATAGTCGCATT 58.958 34.615 0.00 0.00 35.76 3.56
2293 4741 7.549134 TGTCAAATCACTCTAATAGTCGCATTT 59.451 33.333 0.00 0.00 35.76 2.32
2294 4742 8.391106 GTCAAATCACTCTAATAGTCGCATTTT 58.609 33.333 0.00 0.00 35.76 1.82
2295 4743 8.390354 TCAAATCACTCTAATAGTCGCATTTTG 58.610 33.333 0.00 0.00 35.76 2.44
2296 4744 7.849804 AATCACTCTAATAGTCGCATTTTGT 57.150 32.000 0.00 0.00 35.76 2.83
2297 4745 6.647212 TCACTCTAATAGTCGCATTTTGTG 57.353 37.500 0.00 0.00 35.76 3.33
2298 4746 5.063438 TCACTCTAATAGTCGCATTTTGTGC 59.937 40.000 0.00 0.00 43.14 4.57
2299 4747 5.163864 CACTCTAATAGTCGCATTTTGTGCA 60.164 40.000 0.70 0.00 45.41 4.57
2300 4748 7.155649 CACTCTAATAGTCGCATTTTGTGCAC 61.156 42.308 10.75 10.75 45.41 4.57
2301 4749 9.919559 CACTCTAATAGTCGCATTTTGTGCACC 62.920 44.444 15.69 0.00 45.41 5.01
2310 4758 4.718858 CATTTTGTGCACCTTGATTGTG 57.281 40.909 15.69 0.00 36.79 3.33
2311 4759 4.370049 CATTTTGTGCACCTTGATTGTGA 58.630 39.130 15.69 0.00 35.74 3.58
2312 4760 4.669206 TTTTGTGCACCTTGATTGTGAT 57.331 36.364 15.69 0.00 35.74 3.06
2313 4761 5.781210 TTTTGTGCACCTTGATTGTGATA 57.219 34.783 15.69 0.00 35.74 2.15
2314 4762 5.981088 TTTGTGCACCTTGATTGTGATAT 57.019 34.783 15.69 0.00 35.74 1.63
2315 4763 7.459795 TTTTGTGCACCTTGATTGTGATATA 57.540 32.000 15.69 0.00 35.74 0.86
2316 4764 6.682423 TTGTGCACCTTGATTGTGATATAG 57.318 37.500 15.69 0.00 35.74 1.31
2317 4765 5.125356 TGTGCACCTTGATTGTGATATAGG 58.875 41.667 15.69 0.00 35.74 2.57
2318 4766 5.104569 TGTGCACCTTGATTGTGATATAGGA 60.105 40.000 15.69 0.00 35.74 2.94
2319 4767 5.822519 GTGCACCTTGATTGTGATATAGGAA 59.177 40.000 5.22 0.00 35.74 3.36
2320 4768 6.318648 GTGCACCTTGATTGTGATATAGGAAA 59.681 38.462 5.22 0.00 35.74 3.13
2321 4769 6.889177 TGCACCTTGATTGTGATATAGGAAAA 59.111 34.615 0.00 0.00 35.74 2.29
2322 4770 7.395772 TGCACCTTGATTGTGATATAGGAAAAA 59.604 33.333 0.00 0.00 35.74 1.94
2323 4771 7.702348 GCACCTTGATTGTGATATAGGAAAAAC 59.298 37.037 0.00 0.00 35.74 2.43
2324 4772 8.960591 CACCTTGATTGTGATATAGGAAAAACT 58.039 33.333 0.00 0.00 35.74 2.66
2332 4780 9.496710 TTGTGATATAGGAAAAACTAGGTAGGA 57.503 33.333 0.00 0.00 0.00 2.94
2333 4781 9.496710 TGTGATATAGGAAAAACTAGGTAGGAA 57.503 33.333 0.00 0.00 0.00 3.36
2334 4782 9.984190 GTGATATAGGAAAAACTAGGTAGGAAG 57.016 37.037 0.00 0.00 0.00 3.46
2335 4783 9.725206 TGATATAGGAAAAACTAGGTAGGAAGT 57.275 33.333 0.00 0.00 0.00 3.01
2336 4784 9.984190 GATATAGGAAAAACTAGGTAGGAAGTG 57.016 37.037 0.00 0.00 0.00 3.16
2337 4785 4.907809 AGGAAAAACTAGGTAGGAAGTGC 58.092 43.478 0.00 0.00 0.00 4.40
2338 4786 3.683340 GGAAAAACTAGGTAGGAAGTGCG 59.317 47.826 0.00 0.00 0.00 5.34
2339 4787 3.329929 AAAACTAGGTAGGAAGTGCGG 57.670 47.619 0.00 0.00 0.00 5.69
2340 4788 0.535797 AACTAGGTAGGAAGTGCGGC 59.464 55.000 0.00 0.00 0.00 6.53
2341 4789 0.324460 ACTAGGTAGGAAGTGCGGCT 60.324 55.000 0.00 0.00 0.00 5.52
2342 4790 0.824759 CTAGGTAGGAAGTGCGGCTT 59.175 55.000 0.00 0.00 40.76 4.35
2343 4791 0.535335 TAGGTAGGAAGTGCGGCTTG 59.465 55.000 0.00 0.00 37.59 4.01
2344 4792 2.399356 GGTAGGAAGTGCGGCTTGC 61.399 63.158 0.00 4.58 44.59 4.01
2345 4793 2.046314 TAGGAAGTGCGGCTTGCC 60.046 61.111 0.00 0.75 45.25 4.52
2346 4794 3.950794 TAGGAAGTGCGGCTTGCCG 62.951 63.158 27.32 27.32 45.25 5.69
2367 4815 4.619227 CCCGCACCCGACAACAGT 62.619 66.667 0.00 0.00 36.29 3.55
2368 4816 3.041940 CCGCACCCGACAACAGTC 61.042 66.667 0.00 0.00 36.29 3.51
2369 4817 3.041940 CGCACCCGACAACAGTCC 61.042 66.667 0.00 0.00 36.29 3.85
2370 4818 3.041940 GCACCCGACAACAGTCCG 61.042 66.667 0.00 0.00 0.00 4.79
2371 4819 3.041940 CACCCGACAACAGTCCGC 61.042 66.667 0.00 0.00 0.00 5.54
2372 4820 3.231736 ACCCGACAACAGTCCGCT 61.232 61.111 0.00 0.00 0.00 5.52
2390 4838 4.017380 CGCTGTCGGGTATAGTCATATC 57.983 50.000 0.00 0.00 0.00 1.63
2391 4839 3.181499 CGCTGTCGGGTATAGTCATATCC 60.181 52.174 0.00 0.00 34.88 2.59
2392 4840 3.762288 GCTGTCGGGTATAGTCATATCCA 59.238 47.826 0.00 0.00 37.73 3.41
2393 4841 4.219944 GCTGTCGGGTATAGTCATATCCAA 59.780 45.833 0.00 0.00 37.73 3.53
2394 4842 5.710984 CTGTCGGGTATAGTCATATCCAAC 58.289 45.833 0.00 0.00 37.73 3.77
2395 4843 4.525487 TGTCGGGTATAGTCATATCCAACC 59.475 45.833 0.00 0.00 37.73 3.77
2396 4844 4.081807 GTCGGGTATAGTCATATCCAACCC 60.082 50.000 0.00 0.00 37.73 4.11
2397 4845 4.467198 GGGTATAGTCATATCCAACCCG 57.533 50.000 0.00 0.00 37.78 5.28
2398 4846 3.197116 GGGTATAGTCATATCCAACCCGG 59.803 52.174 0.00 0.00 37.78 5.73
2399 4847 3.836562 GGTATAGTCATATCCAACCCGGT 59.163 47.826 0.00 0.00 35.57 5.28
2400 4848 5.018809 GGTATAGTCATATCCAACCCGGTA 58.981 45.833 0.00 0.00 35.57 4.02
2401 4849 5.481473 GGTATAGTCATATCCAACCCGGTAA 59.519 44.000 0.00 0.00 35.57 2.85
2402 4850 6.155737 GGTATAGTCATATCCAACCCGGTAAT 59.844 42.308 0.00 0.00 35.57 1.89
2403 4851 7.342799 GGTATAGTCATATCCAACCCGGTAATA 59.657 40.741 0.00 0.00 35.57 0.98
2404 4852 5.479124 AGTCATATCCAACCCGGTAATAC 57.521 43.478 0.00 0.00 35.57 1.89
2405 4853 4.903049 AGTCATATCCAACCCGGTAATACA 59.097 41.667 0.00 0.00 35.57 2.29
2406 4854 5.367352 AGTCATATCCAACCCGGTAATACAA 59.633 40.000 0.00 0.00 35.57 2.41
2407 4855 6.043938 AGTCATATCCAACCCGGTAATACAAT 59.956 38.462 0.00 0.00 35.57 2.71
2408 4856 6.370718 GTCATATCCAACCCGGTAATACAATC 59.629 42.308 0.00 0.00 35.57 2.67
2409 4857 4.781775 ATCCAACCCGGTAATACAATCA 57.218 40.909 0.00 0.00 35.57 2.57
2410 4858 4.781775 TCCAACCCGGTAATACAATCAT 57.218 40.909 0.00 0.00 35.57 2.45
2411 4859 5.118729 TCCAACCCGGTAATACAATCATT 57.881 39.130 0.00 0.00 35.57 2.57
2412 4860 4.884744 TCCAACCCGGTAATACAATCATTG 59.115 41.667 0.00 0.00 35.57 2.82
2413 4861 4.884744 CCAACCCGGTAATACAATCATTGA 59.115 41.667 3.79 0.00 0.00 2.57
2414 4862 5.358442 CCAACCCGGTAATACAATCATTGAA 59.642 40.000 3.79 0.00 0.00 2.69
2415 4863 6.459573 CCAACCCGGTAATACAATCATTGAAG 60.460 42.308 3.79 0.00 0.00 3.02
2416 4864 4.578928 ACCCGGTAATACAATCATTGAAGC 59.421 41.667 3.79 0.00 0.00 3.86
2417 4865 4.578516 CCCGGTAATACAATCATTGAAGCA 59.421 41.667 3.79 0.00 0.00 3.91
2418 4866 5.241506 CCCGGTAATACAATCATTGAAGCAT 59.758 40.000 3.79 0.00 0.00 3.79
2419 4867 6.239008 CCCGGTAATACAATCATTGAAGCATT 60.239 38.462 3.79 1.17 0.00 3.56
2420 4868 6.638063 CCGGTAATACAATCATTGAAGCATTG 59.362 38.462 3.79 0.00 34.29 2.82
2421 4869 6.142798 CGGTAATACAATCATTGAAGCATTGC 59.857 38.462 3.79 0.00 31.74 3.56
2422 4870 6.979817 GGTAATACAATCATTGAAGCATTGCA 59.020 34.615 11.91 0.00 31.74 4.08
2423 4871 7.492020 GGTAATACAATCATTGAAGCATTGCAA 59.508 33.333 11.91 0.00 31.74 4.08
2424 4872 6.897259 ATACAATCATTGAAGCATTGCAAC 57.103 33.333 11.91 4.86 31.74 4.17
2425 4873 4.633175 ACAATCATTGAAGCATTGCAACA 58.367 34.783 11.91 7.50 31.74 3.33
2426 4874 5.242434 ACAATCATTGAAGCATTGCAACAT 58.758 33.333 11.91 0.00 31.74 2.71
2427 4875 6.399743 ACAATCATTGAAGCATTGCAACATA 58.600 32.000 11.91 2.83 31.74 2.29
2428 4876 7.045416 ACAATCATTGAAGCATTGCAACATAT 58.955 30.769 11.91 4.73 31.74 1.78
2429 4877 7.551262 ACAATCATTGAAGCATTGCAACATATT 59.449 29.630 11.91 7.79 31.74 1.28
2430 4878 8.394877 CAATCATTGAAGCATTGCAACATATTT 58.605 29.630 11.91 0.00 0.00 1.40
2431 4879 7.908827 TCATTGAAGCATTGCAACATATTTT 57.091 28.000 11.91 0.00 0.00 1.82
2432 4880 7.744059 TCATTGAAGCATTGCAACATATTTTG 58.256 30.769 11.91 0.00 0.00 2.44
2433 4881 7.388224 TCATTGAAGCATTGCAACATATTTTGT 59.612 29.630 11.91 0.00 41.53 2.83
2434 4882 8.657729 CATTGAAGCATTGCAACATATTTTGTA 58.342 29.630 11.91 0.00 37.68 2.41
2435 4883 8.774890 TTGAAGCATTGCAACATATTTTGTAT 57.225 26.923 11.91 0.00 37.68 2.29
2436 4884 9.866798 TTGAAGCATTGCAACATATTTTGTATA 57.133 25.926 11.91 0.00 37.68 1.47
2437 4885 9.299963 TGAAGCATTGCAACATATTTTGTATAC 57.700 29.630 11.91 0.00 37.68 1.47
2438 4886 8.647143 AAGCATTGCAACATATTTTGTATACC 57.353 30.769 11.91 0.00 37.68 2.73
2439 4887 7.780064 AGCATTGCAACATATTTTGTATACCA 58.220 30.769 11.91 0.00 37.68 3.25
2440 4888 8.256605 AGCATTGCAACATATTTTGTATACCAA 58.743 29.630 11.91 0.00 37.68 3.67
2441 4889 8.877779 GCATTGCAACATATTTTGTATACCAAA 58.122 29.630 0.00 4.73 41.25 3.28
2457 4905 9.995957 TGTATACCAAAATCGACATGTATTTTG 57.004 29.630 26.24 26.24 45.89 2.44
2458 4906 9.997482 GTATACCAAAATCGACATGTATTTTGT 57.003 29.630 28.49 22.37 45.32 2.83
2461 4909 8.964420 ACCAAAATCGACATGTATTTTGTTAG 57.036 30.769 28.49 21.19 45.32 2.34
2462 4910 8.573035 ACCAAAATCGACATGTATTTTGTTAGT 58.427 29.630 28.49 21.60 45.32 2.24
2496 4944 8.761575 ACATTTCATCAAAAATTACAATCGCT 57.238 26.923 0.00 0.00 0.00 4.93
2497 4945 9.206870 ACATTTCATCAAAAATTACAATCGCTT 57.793 25.926 0.00 0.00 0.00 4.68
2501 4949 9.684448 TTCATCAAAAATTACAATCGCTTAACA 57.316 25.926 0.00 0.00 0.00 2.41
2502 4950 9.853555 TCATCAAAAATTACAATCGCTTAACAT 57.146 25.926 0.00 0.00 0.00 2.71
2505 4953 8.431593 TCAAAAATTACAATCGCTTAACATTGC 58.568 29.630 0.00 0.00 33.92 3.56
2506 4954 7.881643 AAAATTACAATCGCTTAACATTGCA 57.118 28.000 0.00 0.00 33.92 4.08
2507 4955 6.869421 AATTACAATCGCTTAACATTGCAC 57.131 33.333 0.00 0.00 33.92 4.57
2508 4956 3.216147 ACAATCGCTTAACATTGCACC 57.784 42.857 0.00 0.00 33.92 5.01
2509 4957 2.819608 ACAATCGCTTAACATTGCACCT 59.180 40.909 0.00 0.00 33.92 4.00
2510 4958 3.119849 ACAATCGCTTAACATTGCACCTC 60.120 43.478 0.00 0.00 33.92 3.85
2511 4959 2.177394 TCGCTTAACATTGCACCTCA 57.823 45.000 0.00 0.00 0.00 3.86
2512 4960 2.076100 TCGCTTAACATTGCACCTCAG 58.924 47.619 0.00 0.00 0.00 3.35
2513 4961 1.466360 CGCTTAACATTGCACCTCAGC 60.466 52.381 0.00 0.00 0.00 4.26
2514 4962 1.135286 GCTTAACATTGCACCTCAGCC 60.135 52.381 0.00 0.00 0.00 4.85
2515 4963 2.440409 CTTAACATTGCACCTCAGCCT 58.560 47.619 0.00 0.00 0.00 4.58
2516 4964 2.584835 TAACATTGCACCTCAGCCTT 57.415 45.000 0.00 0.00 0.00 4.35
2517 4965 2.584835 AACATTGCACCTCAGCCTTA 57.415 45.000 0.00 0.00 0.00 2.69
2518 4966 2.814805 ACATTGCACCTCAGCCTTAT 57.185 45.000 0.00 0.00 0.00 1.73
2519 4967 2.372264 ACATTGCACCTCAGCCTTATG 58.628 47.619 0.00 0.00 0.00 1.90
2520 4968 2.025981 ACATTGCACCTCAGCCTTATGA 60.026 45.455 0.00 0.00 0.00 2.15
2521 4969 2.877097 TTGCACCTCAGCCTTATGAA 57.123 45.000 0.00 0.00 0.00 2.57
2522 4970 2.877097 TGCACCTCAGCCTTATGAAA 57.123 45.000 0.00 0.00 0.00 2.69
2523 4971 3.153369 TGCACCTCAGCCTTATGAAAA 57.847 42.857 0.00 0.00 0.00 2.29
2524 4972 3.700538 TGCACCTCAGCCTTATGAAAAT 58.299 40.909 0.00 0.00 0.00 1.82
2525 4973 4.088634 TGCACCTCAGCCTTATGAAAATT 58.911 39.130 0.00 0.00 0.00 1.82
2526 4974 4.527816 TGCACCTCAGCCTTATGAAAATTT 59.472 37.500 0.00 0.00 0.00 1.82
2527 4975 5.714333 TGCACCTCAGCCTTATGAAAATTTA 59.286 36.000 0.00 0.00 0.00 1.40
2528 4976 6.127647 TGCACCTCAGCCTTATGAAAATTTAG 60.128 38.462 0.00 0.00 0.00 1.85
2529 4977 6.681368 GCACCTCAGCCTTATGAAAATTTAGG 60.681 42.308 0.00 0.00 0.00 2.69
2530 4978 6.603201 CACCTCAGCCTTATGAAAATTTAGGA 59.397 38.462 7.94 0.00 0.00 2.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.078516 GACCCAGGTCGAACCCGG 62.079 72.222 0.00 0.00 39.75 5.73
2 3 4.078516 GGACCCAGGTCGAACCCG 62.079 72.222 10.65 0.00 45.41 5.28
5 6 4.754667 GGCGGACCCAGGTCGAAC 62.755 72.222 10.65 0.00 45.41 3.95
21 22 3.564027 GACCGAAATCAGCGCCGG 61.564 66.667 17.23 17.23 46.65 6.13
22 23 3.564027 GGACCGAAATCAGCGCCG 61.564 66.667 2.29 0.00 0.00 6.46
23 24 1.982073 CTTGGACCGAAATCAGCGCC 61.982 60.000 2.29 0.00 0.00 6.53
24 25 1.425428 CTTGGACCGAAATCAGCGC 59.575 57.895 0.00 0.00 0.00 5.92
25 26 1.425428 GCTTGGACCGAAATCAGCG 59.575 57.895 0.00 0.00 0.00 5.18
26 27 1.803289 GGCTTGGACCGAAATCAGC 59.197 57.895 0.00 0.00 0.00 4.26
49 50 1.074951 CTCCCAGGAGCCCGTTTTT 59.925 57.895 0.00 0.00 35.31 1.94
50 51 2.757077 CTCCCAGGAGCCCGTTTT 59.243 61.111 0.00 0.00 35.31 2.43
58 59 4.504916 CAGTCGCGCTCCCAGGAG 62.505 72.222 9.48 9.48 44.56 3.69
68 69 3.656045 AAAAACGGCCCAGTCGCG 61.656 61.111 0.00 0.00 32.11 5.87
82 83 4.003011 CGTGCCGACGCCGAAAAA 62.003 61.111 0.00 0.00 39.10 1.94
83 84 4.946266 TCGTGCCGACGCCGAAAA 62.946 61.111 0.00 0.00 45.68 2.29
84 85 4.946266 TTCGTGCCGACGCCGAAA 62.946 61.111 11.17 0.00 45.68 3.46
85 86 4.946266 TTTCGTGCCGACGCCGAA 62.946 61.111 9.99 9.99 45.68 4.30
86 87 4.946266 TTTTCGTGCCGACGCCGA 62.946 61.111 0.00 0.00 45.68 5.54
87 88 4.003011 TTTTTCGTGCCGACGCCG 62.003 61.111 0.00 0.00 45.68 6.46
101 102 3.264450 AGATCCCTCTCCACGTGATTTTT 59.736 43.478 19.30 0.00 0.00 1.94
102 103 2.840651 AGATCCCTCTCCACGTGATTTT 59.159 45.455 19.30 0.00 0.00 1.82
103 104 2.432510 GAGATCCCTCTCCACGTGATTT 59.567 50.000 19.30 0.00 41.86 2.17
104 105 2.035632 GAGATCCCTCTCCACGTGATT 58.964 52.381 19.30 0.00 41.86 2.57
105 106 1.216678 AGAGATCCCTCTCCACGTGAT 59.783 52.381 19.30 0.00 46.38 3.06
106 107 0.626382 AGAGATCCCTCTCCACGTGA 59.374 55.000 19.30 2.03 46.38 4.35
107 108 0.743688 CAGAGATCCCTCTCCACGTG 59.256 60.000 9.08 9.08 46.38 4.49
108 109 0.333312 ACAGAGATCCCTCTCCACGT 59.667 55.000 0.00 0.00 46.38 4.49
109 110 1.407258 GAACAGAGATCCCTCTCCACG 59.593 57.143 0.00 0.00 46.38 4.94
110 111 1.407258 CGAACAGAGATCCCTCTCCAC 59.593 57.143 0.00 0.00 46.38 4.02
111 112 1.006043 ACGAACAGAGATCCCTCTCCA 59.994 52.381 0.00 0.00 46.38 3.86
112 113 1.679153 GACGAACAGAGATCCCTCTCC 59.321 57.143 0.00 0.00 46.38 3.71
113 114 1.679153 GGACGAACAGAGATCCCTCTC 59.321 57.143 0.00 0.00 46.38 3.20
115 116 1.407258 CAGGACGAACAGAGATCCCTC 59.593 57.143 0.00 0.00 39.72 4.30
116 117 1.479709 CAGGACGAACAGAGATCCCT 58.520 55.000 0.00 0.00 30.99 4.20
117 118 0.461961 CCAGGACGAACAGAGATCCC 59.538 60.000 0.00 0.00 30.99 3.85
118 119 0.461961 CCCAGGACGAACAGAGATCC 59.538 60.000 0.00 0.00 0.00 3.36
119 120 0.461961 CCCCAGGACGAACAGAGATC 59.538 60.000 0.00 0.00 0.00 2.75
120 121 0.041238 TCCCCAGGACGAACAGAGAT 59.959 55.000 0.00 0.00 0.00 2.75
190 193 4.963373 TGACCCTCAGTTAATTCGAACAA 58.037 39.130 0.00 0.00 0.00 2.83
195 198 2.932614 CAGCTGACCCTCAGTTAATTCG 59.067 50.000 8.42 0.00 45.94 3.34
253 257 9.388346 TCACGTGTTTATTATGAACAAAATCAC 57.612 29.630 16.51 0.00 38.60 3.06
260 264 9.658475 CTTTCTTTCACGTGTTTATTATGAACA 57.342 29.630 16.51 0.00 34.83 3.18
370 375 6.574269 CGAGAGGGACACATAATATATGGCAA 60.574 42.308 0.00 0.00 0.00 4.52
446 466 2.105649 GGAGGAAAGAGGCTAAGGATGG 59.894 54.545 0.00 0.00 0.00 3.51
475 495 2.358737 GCGACCCAGTCACCAAGG 60.359 66.667 0.00 0.00 32.09 3.61
516 546 6.258068 CCGTGAAACTAGTCCAAGATATTTCC 59.742 42.308 0.00 0.00 31.75 3.13
578 650 7.279758 GGCATCTTCTCATATTGTATTAGGCTC 59.720 40.741 0.00 0.00 0.00 4.70
664 1074 0.758734 CACGGAGGCTCCATGGATAA 59.241 55.000 31.69 0.00 35.91 1.75
730 1141 9.244292 AGATATTGCGATCTTGGATACTACTAA 57.756 33.333 0.00 0.00 31.92 2.24
731 1142 8.809468 AGATATTGCGATCTTGGATACTACTA 57.191 34.615 0.00 0.00 31.92 1.82
732 1143 7.710676 AGATATTGCGATCTTGGATACTACT 57.289 36.000 0.00 0.00 31.92 2.57
733 1144 8.132362 CCTAGATATTGCGATCTTGGATACTAC 58.868 40.741 14.35 0.00 46.07 2.73
736 1147 7.101652 TCCTAGATATTGCGATCTTGGATAC 57.898 40.000 16.72 0.00 46.42 2.24
1518 3948 2.433664 GACAACTACACCGGCGGG 60.434 66.667 31.78 21.03 40.11 6.13
1580 4025 2.437281 CAATACTGAGGCAGTGAGGGAT 59.563 50.000 10.15 0.00 45.01 3.85
1649 4095 3.514645 ACGGCGGTAGTAACACATTAAG 58.485 45.455 13.24 0.00 0.00 1.85
1664 4110 2.606272 GACTAATAAAACAGGACGGCGG 59.394 50.000 13.24 0.00 0.00 6.13
1666 4112 3.870274 AGGACTAATAAAACAGGACGGC 58.130 45.455 0.00 0.00 0.00 5.68
1667 4113 6.428771 TGAAAAGGACTAATAAAACAGGACGG 59.571 38.462 0.00 0.00 0.00 4.79
1723 4169 8.851541 TTTATTAGTTAAATCCGTGGTCAAGT 57.148 30.769 0.00 0.00 0.00 3.16
1724 4170 8.943002 ACTTTATTAGTTAAATCCGTGGTCAAG 58.057 33.333 0.00 0.00 31.29 3.02
1757 4203 7.535940 CCGTTGATACAATTTTTAACGACATGT 59.464 33.333 0.00 0.00 42.23 3.21
1761 4207 8.663771 AATCCGTTGATACAATTTTTAACGAC 57.336 30.769 8.64 0.00 42.23 4.34
1781 4227 5.107989 CGGACTATGTTCAAATACGAATCCG 60.108 44.000 0.00 0.00 38.36 4.18
1794 4240 8.773404 AAGTATAATATTGCCGGACTATGTTC 57.227 34.615 5.05 0.00 0.00 3.18
1884 4332 5.163374 ACCTCCGTCATGGGTTATTAGTAAC 60.163 44.000 0.00 0.00 39.57 2.50
1885 4333 4.964262 ACCTCCGTCATGGGTTATTAGTAA 59.036 41.667 0.00 0.00 38.76 2.24
1886 4334 4.549668 ACCTCCGTCATGGGTTATTAGTA 58.450 43.478 0.00 0.00 38.76 1.82
1887 4335 3.381335 ACCTCCGTCATGGGTTATTAGT 58.619 45.455 0.00 0.00 38.76 2.24
1888 4336 4.587684 ACTACCTCCGTCATGGGTTATTAG 59.412 45.833 0.00 0.00 38.76 1.73
1889 4337 4.549668 ACTACCTCCGTCATGGGTTATTA 58.450 43.478 0.00 0.00 38.76 0.98
1890 4338 3.381335 ACTACCTCCGTCATGGGTTATT 58.619 45.455 0.00 0.00 38.76 1.40
1891 4339 3.042059 ACTACCTCCGTCATGGGTTAT 57.958 47.619 0.00 0.00 38.76 1.89
1892 4340 2.537633 ACTACCTCCGTCATGGGTTA 57.462 50.000 0.00 0.00 38.76 2.85
1893 4341 2.105766 GTACTACCTCCGTCATGGGTT 58.894 52.381 0.00 0.00 38.76 4.11
1894 4342 1.772836 GTACTACCTCCGTCATGGGT 58.227 55.000 0.00 0.00 38.76 4.51
1895 4343 0.666913 CGTACTACCTCCGTCATGGG 59.333 60.000 0.00 0.00 38.76 4.00
1896 4344 0.030369 GCGTACTACCTCCGTCATGG 59.970 60.000 0.00 0.00 40.09 3.66
1897 4345 1.022735 AGCGTACTACCTCCGTCATG 58.977 55.000 0.00 0.00 0.00 3.07
1898 4346 2.216898 GTAGCGTACTACCTCCGTCAT 58.783 52.381 0.00 0.00 42.60 3.06
1899 4347 1.656652 GTAGCGTACTACCTCCGTCA 58.343 55.000 0.00 0.00 42.60 4.35
1908 4356 5.070180 ACAGAGAGTATGGAGTAGCGTACTA 59.930 44.000 0.00 0.00 39.59 1.82
1909 4357 4.141665 ACAGAGAGTATGGAGTAGCGTACT 60.142 45.833 0.00 0.00 42.86 2.73
1910 4358 4.024725 CACAGAGAGTATGGAGTAGCGTAC 60.025 50.000 0.00 0.00 0.00 3.67
1911 4359 4.127907 CACAGAGAGTATGGAGTAGCGTA 58.872 47.826 0.00 0.00 0.00 4.42
1912 4360 2.946329 CACAGAGAGTATGGAGTAGCGT 59.054 50.000 0.00 0.00 0.00 5.07
1913 4361 2.946329 ACACAGAGAGTATGGAGTAGCG 59.054 50.000 0.00 0.00 0.00 4.26
1914 4362 4.036262 CAGACACAGAGAGTATGGAGTAGC 59.964 50.000 0.00 0.00 0.00 3.58
1915 4363 5.432645 TCAGACACAGAGAGTATGGAGTAG 58.567 45.833 0.00 0.00 0.00 2.57
1916 4364 5.437191 TCAGACACAGAGAGTATGGAGTA 57.563 43.478 0.00 0.00 0.00 2.59
1917 4365 4.308526 TCAGACACAGAGAGTATGGAGT 57.691 45.455 0.00 0.00 0.00 3.85
1918 4366 5.651387 TTTCAGACACAGAGAGTATGGAG 57.349 43.478 0.00 0.00 0.00 3.86
1919 4367 6.611613 ATTTTCAGACACAGAGAGTATGGA 57.388 37.500 0.00 0.00 0.00 3.41
1920 4368 7.819415 TGTTATTTTCAGACACAGAGAGTATGG 59.181 37.037 0.00 0.00 0.00 2.74
1921 4369 8.763049 TGTTATTTTCAGACACAGAGAGTATG 57.237 34.615 0.00 0.00 0.00 2.39
1922 4370 9.950496 AATGTTATTTTCAGACACAGAGAGTAT 57.050 29.630 0.00 0.00 0.00 2.12
1923 4371 9.208022 CAATGTTATTTTCAGACACAGAGAGTA 57.792 33.333 0.00 0.00 0.00 2.59
1924 4372 7.716998 ACAATGTTATTTTCAGACACAGAGAGT 59.283 33.333 0.00 0.00 0.00 3.24
1925 4373 8.092521 ACAATGTTATTTTCAGACACAGAGAG 57.907 34.615 0.00 0.00 0.00 3.20
1926 4374 9.725019 ATACAATGTTATTTTCAGACACAGAGA 57.275 29.630 0.00 0.00 0.00 3.10
1936 4384 9.646427 GGCACCTAAAATACAATGTTATTTTCA 57.354 29.630 13.00 4.82 37.19 2.69
1937 4385 9.869757 AGGCACCTAAAATACAATGTTATTTTC 57.130 29.630 13.00 4.14 37.19 2.29
1941 4389 9.695155 AGTAAGGCACCTAAAATACAATGTTAT 57.305 29.630 0.00 0.00 0.00 1.89
1942 4390 8.952278 CAGTAAGGCACCTAAAATACAATGTTA 58.048 33.333 0.00 0.00 0.00 2.41
1943 4391 7.576856 GCAGTAAGGCACCTAAAATACAATGTT 60.577 37.037 0.00 0.00 0.00 2.71
1944 4392 6.127730 GCAGTAAGGCACCTAAAATACAATGT 60.128 38.462 0.00 0.00 0.00 2.71
1945 4393 6.265577 GCAGTAAGGCACCTAAAATACAATG 58.734 40.000 0.00 0.00 0.00 2.82
1946 4394 5.359860 GGCAGTAAGGCACCTAAAATACAAT 59.640 40.000 0.00 0.00 43.51 2.71
1947 4395 4.703093 GGCAGTAAGGCACCTAAAATACAA 59.297 41.667 0.00 0.00 43.51 2.41
1948 4396 4.266714 GGCAGTAAGGCACCTAAAATACA 58.733 43.478 0.00 0.00 43.51 2.29
1949 4397 3.630769 GGGCAGTAAGGCACCTAAAATAC 59.369 47.826 0.00 0.00 46.44 1.89
1950 4398 3.893521 GGGCAGTAAGGCACCTAAAATA 58.106 45.455 0.00 0.00 46.44 1.40
1951 4399 2.735151 GGGCAGTAAGGCACCTAAAAT 58.265 47.619 0.00 0.00 46.44 1.82
1952 4400 2.209690 GGGCAGTAAGGCACCTAAAA 57.790 50.000 0.00 0.00 46.44 1.52
1953 4401 3.970205 GGGCAGTAAGGCACCTAAA 57.030 52.632 0.00 0.00 46.44 1.85
1958 4406 1.988015 TACTGGGGCAGTAAGGCAC 59.012 57.895 0.00 0.00 43.46 5.01
1959 4407 4.571236 TACTGGGGCAGTAAGGCA 57.429 55.556 0.00 0.00 43.46 4.75
1966 4414 6.784031 AGGAAATCTAATAATACTGGGGCAG 58.216 40.000 0.00 0.00 37.52 4.85
1967 4415 6.780198 AGGAAATCTAATAATACTGGGGCA 57.220 37.500 0.00 0.00 0.00 5.36
1968 4416 8.478775 AAAAGGAAATCTAATAATACTGGGGC 57.521 34.615 0.00 0.00 0.00 5.80
2199 4647 5.009610 AGAGCGCTTCATTAACTTCCAAAAA 59.990 36.000 13.26 0.00 0.00 1.94
2200 4648 4.518970 AGAGCGCTTCATTAACTTCCAAAA 59.481 37.500 13.26 0.00 0.00 2.44
2201 4649 4.072131 AGAGCGCTTCATTAACTTCCAAA 58.928 39.130 13.26 0.00 0.00 3.28
2202 4650 3.674997 AGAGCGCTTCATTAACTTCCAA 58.325 40.909 13.26 0.00 0.00 3.53
2203 4651 3.334583 AGAGCGCTTCATTAACTTCCA 57.665 42.857 13.26 0.00 0.00 3.53
2224 4672 0.248012 TGGCATAGGTTTTCGCGAGA 59.752 50.000 9.59 0.43 39.20 4.04
2225 4673 1.083489 TTGGCATAGGTTTTCGCGAG 58.917 50.000 9.59 0.00 0.00 5.03
2226 4674 1.400142 CATTGGCATAGGTTTTCGCGA 59.600 47.619 3.71 3.71 0.00 5.87
2227 4675 1.132262 ACATTGGCATAGGTTTTCGCG 59.868 47.619 0.00 0.00 0.00 5.87
2228 4676 2.939460 ACATTGGCATAGGTTTTCGC 57.061 45.000 0.00 0.00 0.00 4.70
2229 4677 6.260050 ACATAGTACATTGGCATAGGTTTTCG 59.740 38.462 0.00 0.00 0.00 3.46
2230 4678 7.067008 ACACATAGTACATTGGCATAGGTTTTC 59.933 37.037 0.00 0.00 0.00 2.29
2231 4679 6.889722 ACACATAGTACATTGGCATAGGTTTT 59.110 34.615 0.00 0.00 0.00 2.43
2232 4680 6.423182 ACACATAGTACATTGGCATAGGTTT 58.577 36.000 0.00 0.00 0.00 3.27
2233 4681 6.001449 ACACATAGTACATTGGCATAGGTT 57.999 37.500 0.00 0.00 0.00 3.50
2234 4682 5.630415 ACACATAGTACATTGGCATAGGT 57.370 39.130 0.00 0.00 0.00 3.08
2247 4695 5.047872 TGACAGAAAAGCGGTACACATAGTA 60.048 40.000 0.00 0.00 0.00 1.82
2248 4696 4.243270 GACAGAAAAGCGGTACACATAGT 58.757 43.478 0.00 0.00 0.00 2.12
2249 4697 4.242475 TGACAGAAAAGCGGTACACATAG 58.758 43.478 0.00 0.00 0.00 2.23
2250 4698 4.260139 TGACAGAAAAGCGGTACACATA 57.740 40.909 0.00 0.00 0.00 2.29
2251 4699 3.120321 TGACAGAAAAGCGGTACACAT 57.880 42.857 0.00 0.00 0.00 3.21
2252 4700 2.605837 TGACAGAAAAGCGGTACACA 57.394 45.000 0.00 0.00 0.00 3.72
2253 4701 3.955771 TTTGACAGAAAAGCGGTACAC 57.044 42.857 0.00 0.00 0.00 2.90
2254 4702 4.024387 GTGATTTGACAGAAAAGCGGTACA 60.024 41.667 0.00 0.00 0.00 2.90
2255 4703 4.213482 AGTGATTTGACAGAAAAGCGGTAC 59.787 41.667 0.00 0.00 0.00 3.34
2256 4704 4.385825 AGTGATTTGACAGAAAAGCGGTA 58.614 39.130 0.00 0.00 0.00 4.02
2257 4705 3.214328 AGTGATTTGACAGAAAAGCGGT 58.786 40.909 0.00 0.00 0.00 5.68
2258 4706 3.499918 AGAGTGATTTGACAGAAAAGCGG 59.500 43.478 0.00 0.00 0.00 5.52
2259 4707 4.739046 AGAGTGATTTGACAGAAAAGCG 57.261 40.909 0.00 0.00 0.00 4.68
2260 4708 8.940952 ACTATTAGAGTGATTTGACAGAAAAGC 58.059 33.333 0.00 0.00 36.87 3.51
2262 4710 9.140286 CGACTATTAGAGTGATTTGACAGAAAA 57.860 33.333 0.00 0.00 39.06 2.29
2263 4711 7.275779 GCGACTATTAGAGTGATTTGACAGAAA 59.724 37.037 0.00 0.00 39.06 2.52
2264 4712 6.752351 GCGACTATTAGAGTGATTTGACAGAA 59.248 38.462 0.00 0.00 39.06 3.02
2265 4713 6.127730 TGCGACTATTAGAGTGATTTGACAGA 60.128 38.462 0.00 0.00 39.06 3.41
2266 4714 6.036470 TGCGACTATTAGAGTGATTTGACAG 58.964 40.000 0.00 0.00 39.06 3.51
2267 4715 5.961272 TGCGACTATTAGAGTGATTTGACA 58.039 37.500 0.00 0.00 39.06 3.58
2268 4716 7.470289 AATGCGACTATTAGAGTGATTTGAC 57.530 36.000 0.00 0.00 39.06 3.18
2269 4717 8.390354 CAAAATGCGACTATTAGAGTGATTTGA 58.610 33.333 0.00 0.00 39.06 2.69
2270 4718 8.177663 ACAAAATGCGACTATTAGAGTGATTTG 58.822 33.333 0.00 4.90 39.06 2.32
2271 4719 8.177663 CACAAAATGCGACTATTAGAGTGATTT 58.822 33.333 0.00 0.00 39.06 2.17
2272 4720 7.677276 GCACAAAATGCGACTATTAGAGTGATT 60.677 37.037 0.00 0.00 46.55 2.57
2273 4721 6.238211 GCACAAAATGCGACTATTAGAGTGAT 60.238 38.462 0.00 0.00 46.55 3.06
2274 4722 5.063438 GCACAAAATGCGACTATTAGAGTGA 59.937 40.000 0.00 0.00 46.55 3.41
2275 4723 5.258622 GCACAAAATGCGACTATTAGAGTG 58.741 41.667 0.00 0.00 46.55 3.51
2276 4724 5.470845 GCACAAAATGCGACTATTAGAGT 57.529 39.130 0.00 0.00 46.55 3.24
2289 4737 4.370049 TCACAATCAAGGTGCACAAAATG 58.630 39.130 20.43 11.24 36.22 2.32
2290 4738 4.669206 TCACAATCAAGGTGCACAAAAT 57.331 36.364 20.43 3.28 36.22 1.82
2291 4739 4.669206 ATCACAATCAAGGTGCACAAAA 57.331 36.364 20.43 0.66 36.22 2.44
2292 4740 5.981088 ATATCACAATCAAGGTGCACAAA 57.019 34.783 20.43 0.27 36.22 2.83
2293 4741 5.589855 CCTATATCACAATCAAGGTGCACAA 59.410 40.000 20.43 0.67 36.22 3.33
2294 4742 5.104569 TCCTATATCACAATCAAGGTGCACA 60.105 40.000 20.43 0.00 36.22 4.57
2295 4743 5.368145 TCCTATATCACAATCAAGGTGCAC 58.632 41.667 8.80 8.80 36.22 4.57
2296 4744 5.628797 TCCTATATCACAATCAAGGTGCA 57.371 39.130 0.00 0.00 36.22 4.57
2297 4745 6.942532 TTTCCTATATCACAATCAAGGTGC 57.057 37.500 0.00 0.00 36.22 5.01
2298 4746 8.960591 AGTTTTTCCTATATCACAATCAAGGTG 58.039 33.333 0.00 0.00 37.60 4.00
2306 4754 9.496710 TCCTACCTAGTTTTTCCTATATCACAA 57.503 33.333 0.00 0.00 0.00 3.33
2307 4755 9.496710 TTCCTACCTAGTTTTTCCTATATCACA 57.503 33.333 0.00 0.00 0.00 3.58
2308 4756 9.984190 CTTCCTACCTAGTTTTTCCTATATCAC 57.016 37.037 0.00 0.00 0.00 3.06
2309 4757 9.725206 ACTTCCTACCTAGTTTTTCCTATATCA 57.275 33.333 0.00 0.00 0.00 2.15
2310 4758 9.984190 CACTTCCTACCTAGTTTTTCCTATATC 57.016 37.037 0.00 0.00 0.00 1.63
2311 4759 8.430431 GCACTTCCTACCTAGTTTTTCCTATAT 58.570 37.037 0.00 0.00 0.00 0.86
2312 4760 7.417116 CGCACTTCCTACCTAGTTTTTCCTATA 60.417 40.741 0.00 0.00 0.00 1.31
2313 4761 6.629739 CGCACTTCCTACCTAGTTTTTCCTAT 60.630 42.308 0.00 0.00 0.00 2.57
2314 4762 5.337009 CGCACTTCCTACCTAGTTTTTCCTA 60.337 44.000 0.00 0.00 0.00 2.94
2315 4763 4.562963 CGCACTTCCTACCTAGTTTTTCCT 60.563 45.833 0.00 0.00 0.00 3.36
2316 4764 3.683340 CGCACTTCCTACCTAGTTTTTCC 59.317 47.826 0.00 0.00 0.00 3.13
2317 4765 3.683340 CCGCACTTCCTACCTAGTTTTTC 59.317 47.826 0.00 0.00 0.00 2.29
2318 4766 3.671716 CCGCACTTCCTACCTAGTTTTT 58.328 45.455 0.00 0.00 0.00 1.94
2319 4767 2.614734 GCCGCACTTCCTACCTAGTTTT 60.615 50.000 0.00 0.00 0.00 2.43
2320 4768 1.066358 GCCGCACTTCCTACCTAGTTT 60.066 52.381 0.00 0.00 0.00 2.66
2321 4769 0.535797 GCCGCACTTCCTACCTAGTT 59.464 55.000 0.00 0.00 0.00 2.24
2322 4770 0.324460 AGCCGCACTTCCTACCTAGT 60.324 55.000 0.00 0.00 0.00 2.57
2323 4771 0.824759 AAGCCGCACTTCCTACCTAG 59.175 55.000 0.00 0.00 30.77 3.02
2324 4772 0.535335 CAAGCCGCACTTCCTACCTA 59.465 55.000 0.00 0.00 36.04 3.08
2325 4773 1.296715 CAAGCCGCACTTCCTACCT 59.703 57.895 0.00 0.00 36.04 3.08
2326 4774 2.399356 GCAAGCCGCACTTCCTACC 61.399 63.158 0.00 0.00 41.79 3.18
2327 4775 2.399356 GGCAAGCCGCACTTCCTAC 61.399 63.158 0.00 0.00 45.17 3.18
2328 4776 2.046314 GGCAAGCCGCACTTCCTA 60.046 61.111 0.00 0.00 45.17 2.94
2350 4798 4.619227 ACTGTTGTCGGGTGCGGG 62.619 66.667 0.00 0.00 0.00 6.13
2351 4799 3.041940 GACTGTTGTCGGGTGCGG 61.042 66.667 0.00 0.00 33.15 5.69
2352 4800 3.041940 GGACTGTTGTCGGGTGCG 61.042 66.667 0.00 0.00 43.79 5.34
2353 4801 3.041940 CGGACTGTTGTCGGGTGC 61.042 66.667 0.00 0.00 43.79 5.01
2354 4802 3.041940 GCGGACTGTTGTCGGGTG 61.042 66.667 6.02 0.00 43.79 4.61
2355 4803 3.231736 AGCGGACTGTTGTCGGGT 61.232 61.111 3.30 3.30 45.16 5.28
2356 4804 2.738521 CAGCGGACTGTTGTCGGG 60.739 66.667 6.02 0.00 43.79 5.14
2369 4817 3.181499 GGATATGACTATACCCGACAGCG 60.181 52.174 0.00 0.00 37.24 5.18
2370 4818 3.762288 TGGATATGACTATACCCGACAGC 59.238 47.826 0.00 0.00 0.00 4.40
2371 4819 5.336531 GGTTGGATATGACTATACCCGACAG 60.337 48.000 0.00 0.00 31.36 3.51
2372 4820 4.525487 GGTTGGATATGACTATACCCGACA 59.475 45.833 0.00 0.00 31.36 4.35
2373 4821 4.081807 GGGTTGGATATGACTATACCCGAC 60.082 50.000 0.00 0.00 34.90 4.79
2374 4822 4.091549 GGGTTGGATATGACTATACCCGA 58.908 47.826 0.00 0.00 34.90 5.14
2375 4823 4.467198 GGGTTGGATATGACTATACCCG 57.533 50.000 0.00 0.00 34.90 5.28
2376 4824 3.197116 CCGGGTTGGATATGACTATACCC 59.803 52.174 0.00 0.00 42.00 3.69
2377 4825 3.836562 ACCGGGTTGGATATGACTATACC 59.163 47.826 6.32 0.00 42.00 2.73
2378 4826 6.594788 TTACCGGGTTGGATATGACTATAC 57.405 41.667 4.31 0.00 42.00 1.47
2379 4827 7.894897 TGTATTACCGGGTTGGATATGACTATA 59.105 37.037 4.31 0.00 42.00 1.31
2380 4828 6.727231 TGTATTACCGGGTTGGATATGACTAT 59.273 38.462 4.31 0.00 42.00 2.12
2381 4829 6.076653 TGTATTACCGGGTTGGATATGACTA 58.923 40.000 4.31 0.00 42.00 2.59
2382 4830 4.903049 TGTATTACCGGGTTGGATATGACT 59.097 41.667 4.31 0.00 42.00 3.41
2383 4831 5.217978 TGTATTACCGGGTTGGATATGAC 57.782 43.478 4.31 0.00 42.00 3.06
2384 4832 5.890752 TTGTATTACCGGGTTGGATATGA 57.109 39.130 4.31 0.00 42.00 2.15
2385 4833 6.234920 TGATTGTATTACCGGGTTGGATATG 58.765 40.000 4.31 0.00 42.00 1.78
2386 4834 6.442541 TGATTGTATTACCGGGTTGGATAT 57.557 37.500 4.31 0.00 42.00 1.63
2387 4835 5.890752 TGATTGTATTACCGGGTTGGATA 57.109 39.130 4.31 0.00 42.00 2.59
2388 4836 4.781775 TGATTGTATTACCGGGTTGGAT 57.218 40.909 4.31 0.14 42.00 3.41
2389 4837 4.781775 ATGATTGTATTACCGGGTTGGA 57.218 40.909 4.31 0.00 42.00 3.53
2390 4838 4.884744 TCAATGATTGTATTACCGGGTTGG 59.115 41.667 4.31 0.00 46.41 3.77
2391 4839 6.443934 TTCAATGATTGTATTACCGGGTTG 57.556 37.500 4.31 0.00 0.00 3.77
2392 4840 5.067283 GCTTCAATGATTGTATTACCGGGTT 59.933 40.000 4.31 0.00 0.00 4.11
2393 4841 4.578928 GCTTCAATGATTGTATTACCGGGT 59.421 41.667 6.32 4.46 0.00 5.28
2394 4842 4.578516 TGCTTCAATGATTGTATTACCGGG 59.421 41.667 6.32 0.00 0.00 5.73
2395 4843 5.749596 TGCTTCAATGATTGTATTACCGG 57.250 39.130 0.00 0.00 0.00 5.28
2396 4844 6.142798 GCAATGCTTCAATGATTGTATTACCG 59.857 38.462 4.93 0.00 31.03 4.02
2397 4845 6.979817 TGCAATGCTTCAATGATTGTATTACC 59.020 34.615 6.82 0.11 31.03 2.85
2398 4846 7.990541 TGCAATGCTTCAATGATTGTATTAC 57.009 32.000 6.82 0.00 31.03 1.89
2399 4847 8.033626 TGTTGCAATGCTTCAATGATTGTATTA 58.966 29.630 6.82 0.00 31.03 0.98
2400 4848 6.874664 TGTTGCAATGCTTCAATGATTGTATT 59.125 30.769 6.82 0.58 31.03 1.89
2401 4849 6.399743 TGTTGCAATGCTTCAATGATTGTAT 58.600 32.000 6.82 0.00 31.03 2.29
2402 4850 5.780984 TGTTGCAATGCTTCAATGATTGTA 58.219 33.333 6.82 0.00 31.03 2.41
2403 4851 4.633175 TGTTGCAATGCTTCAATGATTGT 58.367 34.783 6.82 0.00 31.03 2.71
2404 4852 5.794687 ATGTTGCAATGCTTCAATGATTG 57.205 34.783 6.82 0.00 0.00 2.67
2405 4853 8.500753 AAATATGTTGCAATGCTTCAATGATT 57.499 26.923 6.82 5.09 0.00 2.57
2406 4854 8.394877 CAAAATATGTTGCAATGCTTCAATGAT 58.605 29.630 6.82 0.00 0.00 2.45
2407 4855 7.388224 ACAAAATATGTTGCAATGCTTCAATGA 59.612 29.630 6.82 0.00 40.06 2.57
2408 4856 7.523219 ACAAAATATGTTGCAATGCTTCAATG 58.477 30.769 6.82 0.00 40.06 2.82
2409 4857 7.675962 ACAAAATATGTTGCAATGCTTCAAT 57.324 28.000 6.82 0.00 40.06 2.57
2410 4858 8.774890 ATACAAAATATGTTGCAATGCTTCAA 57.225 26.923 6.82 0.00 43.63 2.69
2411 4859 9.299963 GTATACAAAATATGTTGCAATGCTTCA 57.700 29.630 6.82 6.09 43.63 3.02
2412 4860 8.755018 GGTATACAAAATATGTTGCAATGCTTC 58.245 33.333 6.82 0.00 43.63 3.86
2413 4861 8.256605 TGGTATACAAAATATGTTGCAATGCTT 58.743 29.630 6.82 0.00 43.63 3.91
2414 4862 7.780064 TGGTATACAAAATATGTTGCAATGCT 58.220 30.769 6.82 0.00 43.63 3.79
2415 4863 8.417780 TTGGTATACAAAATATGTTGCAATGC 57.582 30.769 0.59 0.00 43.63 3.56
2431 4879 9.995957 CAAAATACATGTCGATTTTGGTATACA 57.004 29.630 25.83 0.00 44.10 2.29
2470 4918 9.853555 AGCGATTGTAATTTTTGATGAAATGTA 57.146 25.926 0.00 0.00 30.06 2.29
2471 4919 8.761575 AGCGATTGTAATTTTTGATGAAATGT 57.238 26.923 0.00 0.00 30.06 2.71
2475 4923 9.684448 TGTTAAGCGATTGTAATTTTTGATGAA 57.316 25.926 0.00 0.00 0.00 2.57
2476 4924 9.853555 ATGTTAAGCGATTGTAATTTTTGATGA 57.146 25.926 0.00 0.00 0.00 2.92
2479 4927 8.431593 GCAATGTTAAGCGATTGTAATTTTTGA 58.568 29.630 0.00 0.00 32.98 2.69
2480 4928 8.219769 TGCAATGTTAAGCGATTGTAATTTTTG 58.780 29.630 0.00 0.00 32.98 2.44
2481 4929 8.220434 GTGCAATGTTAAGCGATTGTAATTTTT 58.780 29.630 0.00 0.00 32.98 1.94
2482 4930 7.148656 GGTGCAATGTTAAGCGATTGTAATTTT 60.149 33.333 0.00 0.00 32.98 1.82
2483 4931 6.310224 GGTGCAATGTTAAGCGATTGTAATTT 59.690 34.615 0.00 0.00 32.98 1.82
2484 4932 5.804979 GGTGCAATGTTAAGCGATTGTAATT 59.195 36.000 0.00 0.00 32.98 1.40
2485 4933 5.125417 AGGTGCAATGTTAAGCGATTGTAAT 59.875 36.000 0.00 0.00 32.98 1.89
2486 4934 4.457603 AGGTGCAATGTTAAGCGATTGTAA 59.542 37.500 0.00 0.00 32.98 2.41
2487 4935 4.006989 AGGTGCAATGTTAAGCGATTGTA 58.993 39.130 0.00 0.00 32.98 2.41
2488 4936 2.819608 AGGTGCAATGTTAAGCGATTGT 59.180 40.909 0.00 0.00 32.98 2.71
2489 4937 3.119884 TGAGGTGCAATGTTAAGCGATTG 60.120 43.478 0.00 0.00 33.46 2.67
2490 4938 3.081061 TGAGGTGCAATGTTAAGCGATT 58.919 40.909 0.00 0.00 0.00 3.34
2491 4939 2.679837 CTGAGGTGCAATGTTAAGCGAT 59.320 45.455 0.00 0.00 0.00 4.58
2492 4940 2.076100 CTGAGGTGCAATGTTAAGCGA 58.924 47.619 0.00 0.00 0.00 4.93
2493 4941 1.466360 GCTGAGGTGCAATGTTAAGCG 60.466 52.381 0.00 0.00 0.00 4.68
2494 4942 1.135286 GGCTGAGGTGCAATGTTAAGC 60.135 52.381 0.00 0.00 34.04 3.09
2495 4943 2.440409 AGGCTGAGGTGCAATGTTAAG 58.560 47.619 0.00 0.00 34.04 1.85
2496 4944 2.584835 AGGCTGAGGTGCAATGTTAA 57.415 45.000 0.00 0.00 34.04 2.01
2497 4945 2.584835 AAGGCTGAGGTGCAATGTTA 57.415 45.000 0.00 0.00 34.04 2.41
2498 4946 2.584835 TAAGGCTGAGGTGCAATGTT 57.415 45.000 0.00 0.00 34.04 2.71
2499 4947 2.025981 TCATAAGGCTGAGGTGCAATGT 60.026 45.455 0.00 0.00 34.04 2.71
2500 4948 2.646930 TCATAAGGCTGAGGTGCAATG 58.353 47.619 0.00 0.00 34.04 2.82
2501 4949 3.370840 TTCATAAGGCTGAGGTGCAAT 57.629 42.857 0.00 0.00 34.04 3.56
2502 4950 2.877097 TTCATAAGGCTGAGGTGCAA 57.123 45.000 0.00 0.00 34.04 4.08
2503 4951 2.877097 TTTCATAAGGCTGAGGTGCA 57.123 45.000 0.00 0.00 34.04 4.57
2504 4952 4.725790 AATTTTCATAAGGCTGAGGTGC 57.274 40.909 0.00 0.00 0.00 5.01
2505 4953 6.603201 TCCTAAATTTTCATAAGGCTGAGGTG 59.397 38.462 0.00 0.00 0.00 4.00
2506 4954 6.731467 TCCTAAATTTTCATAAGGCTGAGGT 58.269 36.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.