AutoCloner

Multiple sequence alignment - TraesCS7B01G234700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G234700	chr7B	100.000	1652	0	0	881	2532	438950442	438952093	0.000000e+00	3051
1	TraesCS7B01G234700	chr7B	100.000	526	0	0	1	526	438949562	438950087	0.000000e+00	972
2	TraesCS7B01G234700	chr7D	89.688	1697	105	23	881	2532	422152664	422150993	0.000000e+00	2100
3	TraesCS7B01G234700	chr7D	96.190	105	2	2	408	511	422152769	422152666	1.200000e-38	171
4	TraesCS7B01G234700	chr7D	95.050	101	5	0	24	124	422154111	422154011	2.610000e-35	159
5	TraesCS7B01G234700	chr5D	87.015	1263	90	26	881	2119	423964550	423965762	0.000000e+00	1356
6	TraesCS7B01G234700	chr5D	85.759	316	22	10	881	1186	562709248	562708946	1.890000e-81	313
7	TraesCS7B01G234700	chr5B	86.281	1261	98	21	881	2122	511835358	511836562	0.000000e+00	1301
8	TraesCS7B01G234700	chr5B	84.211	304	20	17	246	526	511835058	511835356	1.150000e-68	270
9	TraesCS7B01G234700	chr5A	87.907	984	74	20	881	1844	537368899	537369857	0.000000e+00	1116
10	TraesCS7B01G234700	chr4B	89.720	856	66	10	1285	2122	4232185	4233036	0.000000e+00	1074
11	TraesCS7B01G234700	chr7A	87.050	973	70	21	1592	2532	511012792	511013740	0.000000e+00	1048
12	TraesCS7B01G234700	chr7A	91.079	695	39	10	882	1566	511012115	511012796	0.000000e+00	918
13	TraesCS7B01G234700	chr7A	87.234	94	12	0	31	124	511010115	511010208	9.580000e-20	108
14	TraesCS7B01G234700	chr4A	89.148	857	70	10	1285	2122	663652650	663651798	0.000000e+00	1046
15	TraesCS7B01G234700	chr6A	83.882	577	50	29	883	1435	49550746	49551303	6.250000e-141	510
16	TraesCS7B01G234700	chr6A	81.262	539	53	30	921	1435	49201970	49202484	2.360000e-105	392
17	TraesCS7B01G234700	chr6A	79.592	588	50	35	883	1435	49483666	49484218	8.610000e-95	357
18	TraesCS7B01G234700	chr6D	82.662	571	55	26	882	1435	37933934	37934477	1.370000e-127	466
19	TraesCS7B01G234700	chr6B	81.913	575	65	24	883	1442	88781212	88781762	1.380000e-122	449

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G234700	chr7B	438949562	438952093	2531	False	2011.500000	3051	100.000000	1	2532	2	chr7B.!!$F1	2531
1	TraesCS7B01G234700	chr7D	422150993	422154111	3118	True	810.000000	2100	93.642667	24	2532	3	chr7D.!!$R1	2508
2	TraesCS7B01G234700	chr5D	423964550	423965762	1212	False	1356.000000	1356	87.015000	881	2119	1	chr5D.!!$F1	1238
3	TraesCS7B01G234700	chr5B	511835058	511836562	1504	False	785.500000	1301	85.246000	246	2122	2	chr5B.!!$F1	1876
4	TraesCS7B01G234700	chr5A	537368899	537369857	958	False	1116.000000	1116	87.907000	881	1844	1	chr5A.!!$F1	963
5	TraesCS7B01G234700	chr4B	4232185	4233036	851	False	1074.000000	1074	89.720000	1285	2122	1	chr4B.!!$F1	837
6	TraesCS7B01G234700	chr7A	511010115	511013740	3625	False	691.333333	1048	88.454333	31	2532	3	chr7A.!!$F1	2501
7	TraesCS7B01G234700	chr4A	663651798	663652650	852	True	1046.000000	1046	89.148000	1285	2122	1	chr4A.!!$R1	837
8	TraesCS7B01G234700	chr6A	49550746	49551303	557	False	510.000000	510	83.882000	883	1435	1	chr6A.!!$F3	552
9	TraesCS7B01G234700	chr6A	49201970	49202484	514	False	392.000000	392	81.262000	921	1435	1	chr6A.!!$F1	514
10	TraesCS7B01G234700	chr6A	49483666	49484218	552	False	357.000000	357	79.592000	883	1435	1	chr6A.!!$F2	552
11	TraesCS7B01G234700	chr6D	37933934	37934477	543	False	466.000000	466	82.662000	882	1435	1	chr6D.!!$F1	553
12	TraesCS7B01G234700	chr6B	88781212	88781762	550	False	449.000000	449	81.913000	883	1442	1	chr6B.!!$F1	559

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
517	2806	0.612174	CCCACTCCTCTCCAGTCGAA	60.612	60.0	0.0	0.0	0.0	3.71	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1753	4173	0.034337	TTGTACCGAGGCAGTTCCAC	59.966	55.0	0.0	0.0	37.29	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
90	91	3.313526	CCATTTAGATACTGGTGCTGTGC	59.686	47.826	0.00	0.00	0.00	4.57
133	134	6.826893	GCAAAATGCACTCTTGTCTAAAAA	57.173	33.333	0.00	0.00	44.26	1.94
169	528	2.475111	TCTAACTGACGCTTTTTGCTCG	59.525	45.455	0.00	0.00	40.11	5.03
173	532	2.290641	ACTGACGCTTTTTGCTCGAAAT	59.709	40.909	0.00	0.00	40.11	2.17
188	547	7.956420	TGCTCGAAATAAAAACTCTAACTGA	57.044	32.000	0.00	0.00	0.00	3.41
190	549	6.956520	GCTCGAAATAAAAACTCTAACTGAGC	59.043	38.462	0.00	0.00	46.41	4.26
197	556	8.803201	ATAAAAACTCTAACTGAGCTTTTTGC	57.197	30.769	10.62	0.00	44.13	3.68
231	590	5.533482	ACTCTAACTGATGCTTATAAGGCG	58.467	41.667	14.28	0.00	0.00	5.52
232	591	4.307432	TCTAACTGATGCTTATAAGGCGC	58.693	43.478	14.28	0.00	0.00	6.53
233	592	1.884235	ACTGATGCTTATAAGGCGCC	58.116	50.000	21.89	21.89	0.00	6.53
238	1047	4.002982	TGATGCTTATAAGGCGCCAATAG	58.997	43.478	31.54	18.23	0.00	1.73
247	1056	3.003230	CGCCAATAGGGGTTGGGA	58.997	61.111	7.68	0.00	46.97	4.37
250	1059	1.413118	GCCAATAGGGGTTGGGATTG	58.587	55.000	7.68	0.00	46.97	2.67
291	1100	1.133823	ACACAGCCATCCACAAACTCA	60.134	47.619	0.00	0.00	0.00	3.41
294	1103	1.067295	AGCCATCCACAAACTCAGGA	58.933	50.000	0.00	0.00	35.59	3.86
390	2648	4.740822	AGCGCGCTCCCCCATTTT	62.741	61.111	31.32	0.91	0.00	1.82
481	2754	3.473923	CCAAAAATGGCAGGAAACACT	57.526	42.857	0.00	0.00	0.00	3.55
482	2755	4.599047	CCAAAAATGGCAGGAAACACTA	57.401	40.909	0.00	0.00	0.00	2.74
483	2756	4.559153	CCAAAAATGGCAGGAAACACTAG	58.441	43.478	0.00	0.00	0.00	2.57
511	2800	1.862138	TCCCTCCCACTCCTCTCCA	60.862	63.158	0.00	0.00	0.00	3.86
512	2801	1.382420	CCCTCCCACTCCTCTCCAG	60.382	68.421	0.00	0.00	0.00	3.86
513	2802	1.390125	CCTCCCACTCCTCTCCAGT	59.610	63.158	0.00	0.00	0.00	4.00
514	2803	0.686112	CCTCCCACTCCTCTCCAGTC	60.686	65.000	0.00	0.00	0.00	3.51
515	2804	1.000771	TCCCACTCCTCTCCAGTCG	60.001	63.158	0.00	0.00	0.00	4.18
516	2805	1.000771	CCCACTCCTCTCCAGTCGA	60.001	63.158	0.00	0.00	0.00	4.20
517	2806	0.612174	CCCACTCCTCTCCAGTCGAA	60.612	60.000	0.00	0.00	0.00	3.71
518	2807	1.257743	CCACTCCTCTCCAGTCGAAA	58.742	55.000	0.00	0.00	0.00	3.46
519	2808	1.618837	CCACTCCTCTCCAGTCGAAAA	59.381	52.381	0.00	0.00	0.00	2.29
520	2809	2.234908	CCACTCCTCTCCAGTCGAAAAT	59.765	50.000	0.00	0.00	0.00	1.82
521	2810	3.307059	CCACTCCTCTCCAGTCGAAAATT	60.307	47.826	0.00	0.00	0.00	1.82
522	2811	4.319177	CACTCCTCTCCAGTCGAAAATTT	58.681	43.478	0.00	0.00	0.00	1.82
523	2812	4.390297	CACTCCTCTCCAGTCGAAAATTTC	59.610	45.833	0.00	0.00	0.00	2.17
524	2813	3.935828	CTCCTCTCCAGTCGAAAATTTCC	59.064	47.826	0.00	0.00	0.00	3.13
525	2814	3.010420	CCTCTCCAGTCGAAAATTTCCC	58.990	50.000	0.00	0.00	0.00	3.97
1194	3540	2.170187	GCCTCTCAGAGACATCACCAAT	59.830	50.000	2.09	0.00	0.00	3.16
1203	3549	3.854666	AGACATCACCAATCTCTTCGTG	58.145	45.455	0.00	0.00	0.00	4.35
1489	3899	3.058450	CGATAGGAAATGAGCTGCTGAG	58.942	50.000	7.01	0.00	0.00	3.35
1510	3920	7.470289	TGAGAGAAAAGAAAGAGAAAACTCG	57.530	36.000	0.00	0.00	0.00	4.18
1573	3983	2.886523	TGGAATCTGGAACTTTGCAGTG	59.113	45.455	9.94	0.00	45.50	3.66
1666	4081	5.512753	TGCATTACAGAACAGCTTTCAAA	57.487	34.783	10.08	3.86	0.00	2.69
1682	4097	0.675633	CAAACCACTCCCTTTGCAGG	59.324	55.000	0.00	0.00	40.45	4.85
1683	4098	1.115326	AAACCACTCCCTTTGCAGGC	61.115	55.000	0.00	0.00	39.20	4.85
1753	4173	0.107017	AGACGGGCATGGAAAGATGG	60.107	55.000	0.00	0.00	0.00	3.51
1756	4176	1.386525	CGGGCATGGAAAGATGGTGG	61.387	60.000	0.00	0.00	0.00	4.61
1763	4183	1.177401	GGAAAGATGGTGGAACTGCC	58.823	55.000	0.00	0.00	36.74	4.85
1821	4242	3.824133	CAGGAGGGTATGATTTGCATGA	58.176	45.455	0.00	0.00	37.87	3.07
1834	4255	3.291809	TTGCATGACATTCAGCACAAG	57.708	42.857	0.00	0.00	32.93	3.16
1896	4317	7.602644	CAGGTGTACTTGAGTCTAGCAAAAATA	59.397	37.037	1.16	0.00	0.00	1.40
1956	4382	8.687824	ATACGGTTTTATCTTTGCTGAAAATG	57.312	30.769	0.00	0.00	0.00	2.32
1981	4407	7.556275	TGTAAAGGGCATTAGGAAGATAACAAG	59.444	37.037	0.00	0.00	0.00	3.16
1991	4417	4.354087	AGGAAGATAACAAGGTTGAAGGGT	59.646	41.667	0.00	0.00	0.00	4.34
2000	4426	3.721087	AGGTTGAAGGGTTACATCTGG	57.279	47.619	0.00	0.00	0.00	3.86
2110	4542	6.431234	ACATGTTTTAACAGGATCCAGTCTTC	59.569	38.462	15.82	3.21	42.86	2.87
2122	4554	2.762887	TCCAGTCTTCACTATGCTCCTG	59.237	50.000	0.00	0.00	0.00	3.86
2123	4555	2.499289	CCAGTCTTCACTATGCTCCTGT	59.501	50.000	0.00	0.00	0.00	4.00
2125	4557	4.343526	CCAGTCTTCACTATGCTCCTGTAT	59.656	45.833	0.00	0.00	0.00	2.29
2146	4589	1.681264	AGTGCAAAACTTGTAGGTGGC	59.319	47.619	0.00	0.00	34.57	5.01
2240	4683	6.101332	GGATATTTTTCTGCACAATGCTCAA	58.899	36.000	2.02	0.00	45.31	3.02
2296	4752	6.633500	TTGTTTCTTCTCGGTTGATTTCAT	57.367	33.333	0.00	0.00	0.00	2.57
2312	4768	5.521372	TGATTTCATGTGCGATCACTTCTAG	59.479	40.000	0.00	0.00	43.49	2.43
2353	4811	3.991773	TGGTGTGACGCTTGTTCTTATAC	59.008	43.478	0.00	0.00	0.00	1.47
2365	4823	6.204882	GCTTGTTCTTATACAGCCCGATAAAT	59.795	38.462	0.00	0.00	0.00	1.40
2377	4835	3.181490	GCCCGATAAATGTTTGGAAGGTC	60.181	47.826	0.00	0.00	0.00	3.85
2393	4851	4.499183	GAAGGTCGAGATGTTCATGTCTT	58.501	43.478	8.01	0.00	0.00	3.01
2406	4864	1.577328	ATGTCTTGCCTTCAACGCGG	61.577	55.000	12.47	0.00	0.00	6.46
2407	4865	3.353836	TCTTGCCTTCAACGCGGC	61.354	61.111	12.47	2.91	46.46	6.53
2434	4894	0.178998	CCTAGGCCAGGTAGTAGCGA	60.179	60.000	5.01	0.00	39.91	4.93
2463	4929	3.057019	GAGGCGGTTTTCATTGGTTTTC	58.943	45.455	0.00	0.00	0.00	2.29
2467	4933	4.025229	GGCGGTTTTCATTGGTTTTCTTTC	60.025	41.667	0.00	0.00	0.00	2.62
2468	4934	4.808895	GCGGTTTTCATTGGTTTTCTTTCT	59.191	37.500	0.00	0.00	0.00	2.52
2469	4935	5.293324	GCGGTTTTCATTGGTTTTCTTTCTT	59.707	36.000	0.00	0.00	0.00	2.52
2470	4936	6.183360	GCGGTTTTCATTGGTTTTCTTTCTTT	60.183	34.615	0.00	0.00	0.00	2.52
2471	4937	7.625395	GCGGTTTTCATTGGTTTTCTTTCTTTT	60.625	33.333	0.00	0.00	0.00	2.27
2472	4938	8.233868	CGGTTTTCATTGGTTTTCTTTCTTTTT	58.766	29.630	0.00	0.00	0.00	1.94
2498	4964	3.377172	AGGTCGGTTCTTTTTGTGTTCTG	59.623	43.478	0.00	0.00	0.00	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
132	133	7.432252	CGTCAGTTAGAGTTCATTTTGCTTTTT	59.568	33.333	0.00	0.00	0.00	1.94
133	134	6.912591	CGTCAGTTAGAGTTCATTTTGCTTTT	59.087	34.615	0.00	0.00	0.00	2.27
134	135	6.430451	CGTCAGTTAGAGTTCATTTTGCTTT	58.570	36.000	0.00	0.00	0.00	3.51
135	136	5.560953	GCGTCAGTTAGAGTTCATTTTGCTT	60.561	40.000	0.00	0.00	0.00	3.91
136	137	4.083802	GCGTCAGTTAGAGTTCATTTTGCT	60.084	41.667	0.00	0.00	0.00	3.91
137	138	4.083802	AGCGTCAGTTAGAGTTCATTTTGC	60.084	41.667	0.00	0.00	0.00	3.68
138	139	5.597813	AGCGTCAGTTAGAGTTCATTTTG	57.402	39.130	0.00	0.00	0.00	2.44
139	140	6.619801	AAAGCGTCAGTTAGAGTTCATTTT	57.380	33.333	0.00	0.00	0.00	1.82
140	141	6.619801	AAAAGCGTCAGTTAGAGTTCATTT	57.380	33.333	0.00	0.00	0.00	2.32
141	142	6.430451	CAAAAAGCGTCAGTTAGAGTTCATT	58.570	36.000	0.00	0.00	0.00	2.57
142	143	5.560953	GCAAAAAGCGTCAGTTAGAGTTCAT	60.561	40.000	0.00	0.00	0.00	2.57
143	144	4.260620	GCAAAAAGCGTCAGTTAGAGTTCA	60.261	41.667	0.00	0.00	0.00	3.18
144	145	4.212150	GCAAAAAGCGTCAGTTAGAGTTC	58.788	43.478	0.00	0.00	0.00	3.01
145	146	4.210832	GCAAAAAGCGTCAGTTAGAGTT	57.789	40.909	0.00	0.00	0.00	3.01
146	147	3.879932	GCAAAAAGCGTCAGTTAGAGT	57.120	42.857	0.00	0.00	0.00	3.24
205	564	7.011482	CGCCTTATAAGCATCAGTTAGAGTTTT	59.989	37.037	6.99	0.00	0.00	2.43
208	567	5.533482	CGCCTTATAAGCATCAGTTAGAGT	58.467	41.667	6.99	0.00	0.00	3.24
209	568	4.387256	GCGCCTTATAAGCATCAGTTAGAG	59.613	45.833	6.99	0.00	0.00	2.43
210	569	4.307432	GCGCCTTATAAGCATCAGTTAGA	58.693	43.478	6.99	0.00	0.00	2.10
213	572	2.222027	GGCGCCTTATAAGCATCAGTT	58.778	47.619	22.15	0.00	0.00	3.16
214	573	1.140852	TGGCGCCTTATAAGCATCAGT	59.859	47.619	29.70	0.00	0.00	3.41
215	574	1.882912	TGGCGCCTTATAAGCATCAG	58.117	50.000	29.70	0.00	0.00	2.90
216	575	2.340210	TTGGCGCCTTATAAGCATCA	57.660	45.000	29.70	0.00	0.00	3.07
217	576	3.375299	CCTATTGGCGCCTTATAAGCATC	59.625	47.826	29.70	0.00	0.00	3.91
224	583	0.850784	AACCCCTATTGGCGCCTTAT	59.149	50.000	29.70	22.23	0.00	1.73
225	584	0.106918	CAACCCCTATTGGCGCCTTA	60.107	55.000	29.70	17.93	0.00	2.69
226	585	1.379843	CAACCCCTATTGGCGCCTT	60.380	57.895	29.70	17.74	0.00	4.35
231	590	1.413118	CAATCCCAACCCCTATTGGC	58.587	55.000	0.00	0.00	46.77	4.52
233	592	1.413118	GGCAATCCCAACCCCTATTG	58.587	55.000	0.00	0.00	33.45	1.90
247	1056	2.282180	GGACCGTGTGTGGGCAAT	60.282	61.111	0.00	0.00	39.59	3.56
273	1082	1.546323	CCTGAGTTTGTGGATGGCTGT	60.546	52.381	0.00	0.00	0.00	4.40
481	2754	2.124403	GAGGGAGCGGACGGACTA	60.124	66.667	0.00	0.00	0.00	2.59
1106	3440	2.782222	GCTACGCCATGAGGACGGA	61.782	63.158	0.00	0.00	38.29	4.69
1168	3514	1.466979	TGTCTCTGAGAGGCACCCT	59.533	57.895	13.56	0.00	39.51	4.34
1176	3522	4.608269	AGAGATTGGTGATGTCTCTGAGA	58.392	43.478	2.58	2.58	45.10	3.27
1194	3540	1.241990	CGGACTCCACCACGAAGAGA	61.242	60.000	0.00	0.00	0.00	3.10
1454	3855	4.030314	TCCTATCGTCAGGAATACGGAT	57.970	45.455	5.45	0.00	41.88	4.18
1489	3899	9.163903	CATTTCGAGTTTTCTCTTTCTTTTCTC	57.836	33.333	0.00	0.00	44.16	2.87
1608	4019	4.646945	CCTGGAGAACTGTAGAAGCAGATA	59.353	45.833	0.00	0.00	39.62	1.98
1666	4081	2.011617	AAGCCTGCAAAGGGAGTGGT	62.012	55.000	0.00	0.00	0.00	4.16
1709	4129	3.806625	TGACGATCAATCAGCAGATCA	57.193	42.857	0.00	0.00	40.45	2.92
1753	4173	0.034337	TTGTACCGAGGCAGTTCCAC	59.966	55.000	0.00	0.00	37.29	4.02
1756	4176	1.798813	CTTGTTGTACCGAGGCAGTTC	59.201	52.381	0.00	0.00	0.00	3.01
1821	4242	4.292186	ACTGGTATCTTGTGCTGAATGT	57.708	40.909	0.00	0.00	0.00	2.71
1932	4358	7.653647	ACATTTTCAGCAAAGATAAAACCGTA	58.346	30.769	0.00	0.00	0.00	4.02
1943	4369	4.630111	TGCCCTTTACATTTTCAGCAAAG	58.370	39.130	0.00	0.00	0.00	2.77
1956	4382	7.013369	CCTTGTTATCTTCCTAATGCCCTTTAC	59.987	40.741	0.00	0.00	0.00	2.01
1981	4407	2.092323	GCCAGATGTAACCCTTCAACC	58.908	52.381	0.00	0.00	0.00	3.77
2077	4507	9.406828	GGATCCTGTTAAAACATGTTTTTAGTC	57.593	33.333	34.51	22.85	42.22	2.59
2122	4554	5.391629	GCCACCTACAAGTTTTGCACTATAC	60.392	44.000	0.00	0.00	32.94	1.47
2123	4555	4.698304	GCCACCTACAAGTTTTGCACTATA	59.302	41.667	0.00	0.00	32.94	1.31
2125	4557	2.882137	GCCACCTACAAGTTTTGCACTA	59.118	45.455	0.00	0.00	32.94	2.74
2128	4560	1.769026	TGCCACCTACAAGTTTTGCA	58.231	45.000	0.00	0.00	0.00	4.08
2129	4561	2.100749	AGTTGCCACCTACAAGTTTTGC	59.899	45.455	0.00	0.00	0.00	3.68
2130	4562	4.578928	ACTAGTTGCCACCTACAAGTTTTG	59.421	41.667	0.00	0.00	32.96	2.44
2131	4563	4.788679	ACTAGTTGCCACCTACAAGTTTT	58.211	39.130	0.00	0.00	32.96	2.43
2146	4589	6.005198	ACGGGGATAGAGAGAATACTAGTTG	58.995	44.000	0.00	0.00	0.00	3.16
2212	4655	7.311364	GCATTGTGCAGAAAAATATCCATTT	57.689	32.000	0.00	0.00	44.26	2.32
2260	4716	6.225981	AGAAGAAACAAAGTTCAATTGCCT	57.774	33.333	0.00	0.00	0.00	4.75
2265	4721	6.094881	TCAACCGAGAAGAAACAAAGTTCAAT	59.905	34.615	0.00	0.00	0.00	2.57
2333	4791	4.434330	GCTGTATAAGAACAAGCGTCACAC	60.434	45.833	0.00	0.00	0.00	3.82
2339	4797	1.593006	CGGGCTGTATAAGAACAAGCG	59.407	52.381	0.00	0.00	0.00	4.68
2353	4811	3.181487	CCTTCCAAACATTTATCGGGCTG	60.181	47.826	0.00	0.00	0.00	4.85
2365	4823	3.181459	TGAACATCTCGACCTTCCAAACA	60.181	43.478	0.00	0.00	0.00	2.83
2377	4835	2.625737	AGGCAAGACATGAACATCTCG	58.374	47.619	0.00	0.00	0.00	4.04
2406	4864	1.451028	CTGGCCTAGGCTGAAGTGC	60.451	63.158	32.18	14.84	41.60	4.40
2407	4865	1.222936	CCTGGCCTAGGCTGAAGTG	59.777	63.158	32.18	16.34	40.38	3.16
2408	4866	3.732938	CCTGGCCTAGGCTGAAGT	58.267	61.111	32.18	0.00	40.38	3.01
2469	4935	3.878160	AAAAGAACCGACCTGCAAAAA	57.122	38.095	0.00	0.00	0.00	1.94
2470	4936	3.056465	ACAAAAAGAACCGACCTGCAAAA	60.056	39.130	0.00	0.00	0.00	2.44
2471	4937	2.494073	ACAAAAAGAACCGACCTGCAAA	59.506	40.909	0.00	0.00	0.00	3.68
2472	4938	2.096248	ACAAAAAGAACCGACCTGCAA	58.904	42.857	0.00	0.00	0.00	4.08
2473	4939	1.403679	CACAAAAAGAACCGACCTGCA	59.596	47.619	0.00	0.00	0.00	4.41
2474	4940	1.404035	ACACAAAAAGAACCGACCTGC	59.596	47.619	0.00	0.00	0.00	4.85
2475	4941	3.377172	AGAACACAAAAAGAACCGACCTG	59.623	43.478	0.00	0.00	0.00	4.00
2476	4942	3.377172	CAGAACACAAAAAGAACCGACCT	59.623	43.478	0.00	0.00	0.00	3.85
2477	4943	3.128068	ACAGAACACAAAAAGAACCGACC	59.872	43.478	0.00	0.00	0.00	4.79
2478	4944	4.095610	CACAGAACACAAAAAGAACCGAC	58.904	43.478	0.00	0.00	0.00	4.79
2479	4945	3.426963	GCACAGAACACAAAAAGAACCGA	60.427	43.478	0.00	0.00	0.00	4.69
2480	4946	2.851824	GCACAGAACACAAAAAGAACCG	59.148	45.455	0.00	0.00	0.00	4.44
2481	4947	3.843999	TGCACAGAACACAAAAAGAACC	58.156	40.909	0.00	0.00	0.00	3.62
2482	4948	5.348451	ACAATGCACAGAACACAAAAAGAAC	59.652	36.000	0.00	0.00	0.00	3.01
2483	4949	5.477510	ACAATGCACAGAACACAAAAAGAA	58.522	33.333	0.00	0.00	0.00	2.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.